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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314161_F | TCGTCGGCAGCGTCGAGCCACGGTCTGCTGGAG | 62.6 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314161_R | GTCTCGTGGGCTCGGTGCAGCTCACCTCGATTTCT | 59.3 | 1.00 |
| mm3_intergenic_Rab8b|Rps27l_chr9_66937525_F | Primer3: not found at this Tm | N.d. | 0.81 |
| mm3_intergenic_Rab8b|Rps27l_chr9_66937525_R | Primer3: not found at this Tm | N.d. | 0.81 |
| mm3_intergenic_Pvrl3|Gm6912_chr16_46600873_F | TCGTCGGCAGCGTCGAGCACAGTCATCTTGGCCT | 60.0 | 0.46 |
| mm3_intergenic_Pvrl3|Gm6912_chr16_46600873_R | GTCTCGTGGGCTCGGAGCCAGACAGACAATTGATTTCT | 58.3 | 0.46 |
| mm4_intergenic_Gm8349|Arhgef26_chr3_61536497_F | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intergenic_Gm8349|Arhgef26_chr3_61536497_R | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intron_Nhs_chrX_161870873_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intron_Nhs_chrX_161870873_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Wdr1|4930421P07Rik_chr5_38566305_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Wdr1|4930421P07Rik_chr5_38566305_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Spin2-ps5|Gm21699_chrX_34310515_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Spin2-ps5|Gm21699_chrX_34310515_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Spin2-ps1|Gm3701_chrX_3930348_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Spin2-ps1|Gm3701_chrX_3930348_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gmcl1l|Gm5926_chrX_32588059_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gmcl1l|Gm5926_chrX_32588059_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm3763|Gm14370_chrX_5112288_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm3763|Gm14370_chrX_5112288_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm3750|Gm4726_chrX_4827035_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm3750|Gm4726_chrX_4827035_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2933|Gm2964_chrX_33856587_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2933|Gm2964_chrX_33856587_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2927|Gm2933_chrX_33682724_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2927|Gm2933_chrX_33682724_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2863|Gm2182_chrX_33340053_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2863|Gm2182_chrX_33340053_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2825|Spin2-ps6_chrX_33000640_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2825|Spin2-ps6_chrX_33000640_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2799|Gmcl1l_chrX_32305185_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2799|Gmcl1l_chrX_32305185_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2231|Gm2913_chrX_33543836_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm2231|Gm2913_chrX_33543836_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm21870|Gm21681_chrX_34134804_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm21870|Gm21681_chrX_34134804_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm21699|Gm2288_chrX_34546347_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm21699|Gm2288_chrX_34546347_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm21447|Spin2f_chrX_31197966_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm21447|Spin2f_chrX_31197966_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm15276|Gm2777_chrX_31357119_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm15276|Gm2777_chrX_31357119_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm15250|Gm15258_chrX_4064454_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm15250|Gm15258_chrX_4064454_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm14347|Gm10921_chrX_4264454_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm14347|Gm10921_chrX_4264454_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm14345|Gm14351_chrX_3732108_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm14345|Gm14351_chrX_3732108_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm14334|Gm14352_chrX_3348376_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm14334|Gm14352_chrX_3348376_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm10922|Gm6019_chrX_4397338_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm10922|Gm6019_chrX_4397338_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm26455|Gm15754_chr5_118433722_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Gm26455|Gm15754_chr5_118433722_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Gm26181|Triml1_chr8_42809893_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm26181|Triml1_chr8_42809893_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Elmo1_chr13_20117917_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Elmo1_chr13_20117917_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Rap1gap_chr4_137711941_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Rap1gap_chr4_137711941_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm5611|Chordc1_chr9_17712166_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm5611|Chordc1_chr9_17712166_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm14365|Gm9428_chrX_5257328_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm14365|Gm9428_chrX_5257328_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm14467|Gm17014_chr2_78837944_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm14467|Gm17014_chr2_78837944_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intron_Msi2_chr11_88681887_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm3_intron_Msi2_chr11_88681887_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Asph_chr4_9519483_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Asph_chr4_9519483_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_exon_Bag4/Gm17484_chr8_25765934_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Bag4/Gm17484_chr8_25765934_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Josd2|Emc10_chr7_44489078_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Josd2|Emc10_chr7_44489078_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Stc2|Bod1_chr11_31380140_F | TCGTCGGCAGCGTCGATCAGAGCAGGAGCAGTGG | 60.1 | 0.14 |
| mm4_intergenic_Stc2|Bod1_chr11_31380140_R | GTCTCGTGGGCTCGGGGAAAGGCAGCAACCCATTG | 60.0 | 0.14 |
| mm4_intergenic_Gm25292|Gm26667_chr16_84695560_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm25292|Gm26667_chr16_84695560_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Gm13364_chr2_15677089_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Gm13364_chr2_15677089_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_4930523C07Rik_chr1_160048536_F | TCGTCGGCAGCGTCAAGGACAGTGACGAGAGGGA | 59.8 | 0.14 |
| mm4_intron_4930523C07Rik_chr1_160048536_R | GTCTCGTGGGCTCGGAGCACTGGACAATGTTGGGA | 59.5 | 0.14 |
| mm4_intron_Col18a1_chr10_77119205_F | TCGTCGGCAGCGTCATCCCGGCTACCTGGTTACT | 60.0 | 0.13 |
| mm4_intron_Col18a1_chr10_77119205_R | GTCTCGTGGGCTCGGCGGGAGTTTAGAGGCCTGTG | 60.1 | 0.13 |
| mm4_intron_Tmem132d_chr5_128219436_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Tmem132d_chr5_128219436_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Peli2|Gm6498_chr14_48190376_F | TCGTCGGCAGCGTCTTGTGTTGGTAGGCTCCACC | 59.8 | 0.12 |
| mm4_intergenic_Peli2|Gm6498_chr14_48190376_R | GTCTCGTGGGCTCGGATTTCCCTTGTTGCCTCCCC | 60.2 | 0.12 |
| mm4_intergenic_Gstm5|Gm12489_chr3_107901931_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gstm5|Gm12489_chr3_107901931_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm22828|Gm23960_chr6_20006874_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm22828|Gm23960_chr6_20006874_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Kctd14_chr7_97457350_F | TCGTCGGCAGCGTCAGGACTGTTGCCATGGCTAC | 60.0 | 0.11 |
| mm4_intron_Kctd14_chr7_97457350_R | GTCTCGTGGGCTCGGTGTGGAGCCCTCATCTCTCA | 59.9 | 0.11 |
| mm3_exon_Tonsl_chr15_76630490_F | TCGTCGGCAGCGTCGAATCTTCTCAACCCCGGGG | 60.1 | 0.10 |
| mm3_exon_Tonsl_chr15_76630490_R | GTCTCGTGGGCTCGGTGTGGCTTCAGCTCCAGTTT | 59.8 | 0.10 |
| mm4_intergenic_5330434G04Rik|Rab9b-ps1_chrX_105403834_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_5330434G04Rik|Rab9b-ps1_chrX_105403834_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm14263|Gm14266_chr2_171017400_F | TCGTCGGCAGCGTCTCACGAGCATAGAGGAGACCA | 60.0 | 0.10 |
| mm4_intergenic_Gm14263|Gm14266_chr2_171017400_R | GTCTCGTGGGCTCGGTGCAGCTGGTAGTGGTCTTG | 59.9 | 0.10 |
| mm4_intergenic_2810407A14Rik|Grik1_chr16_87858367_F | TCGTCGGCAGCGTCAAAGTATGCTGAACCGGCCA | 59.9 | 0.10 |
| mm4_intergenic_2810407A14Rik|Grik1_chr16_87858367_R | GTCTCGTGGGCTCGGTAGGAAGCAGTGCACACAGC | 60.6 | 0.10 |
| mm4_intergenic_Gm9621|Gm24200_chr9_94082373_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm9621|Gm24200_chr9_94082373_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_intergenic_Homer1|Jmy_chr13_93421032_F | TCGTCGGCAGCGTCTGTAGAGACGGGGCAAACAC | 59.9 | 0.10 |
| mm3_intergenic_Homer1|Jmy_chr13_93421032_R | GTCTCGTGGGCTCGGATGGGAGCCTGGTTTTGAGG | 59.9 | 0.10 |
| mm4_intergenic_Ntrk2|Agtpbp1_chr13_59314131_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Ntrk2|Agtpbp1_chr13_59314131_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Ahcy|2310005A03Rik_chr2_155082519_F | TCGTCGGCAGCGTCCTAGGAAGGAGGAGCCCAGT | 60.0 | 0.09 |
| mm3_intergenic_Ahcy|2310005A03Rik_chr2_155082519_R | GTCTCGTGGGCTCGGACCTCGGGCTGAAGTCAAAG | 59.9 | 0.09 |
| mm3_intron_Kalrn_chr16_34430997_F | TCGTCGGCAGCGTCAAAAGGGTGATGCCACGAGT | 59.8 | 0.09 |
| mm3_intron_Kalrn_chr16_34430997_R | GTCTCGTGGGCTCGGCCAGGGATGGGGAAAAGAGG | 59.7 | 0.09 |
| mm4_intergenic_Rbbp8|Gm6277_chr18_11813879_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Rbbp8|Gm6277_chr18_11813879_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Obscn|Iba57_chr11_59138636_F | TCGTCGGCAGCGTCCCCCATGCCCTTCTAGAACG | 60.1 | 0.08 |
| mm4_intergenic_Obscn|Iba57_chr11_59138636_R | GTCTCGTGGGCTCGGGACAGCCAGAGGGGTACTGA | 60.6 | 0.08 |
| mm4_intergenic_Gm22199|Spin1_chr13_51091441_F | TCGTCGGCAGCGTCTGGCTGGGGATCGATTTGAA | 59.3 | 0.08 |
| mm4_intergenic_Gm22199|Spin1_chr13_51091441_R | GTCTCGTGGGCTCGGGGGTGGAAAAGTTGGTTCAGG | 59.3 | 0.08 |
| mm4_intron_Srpk2_chr5_23574499_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Srpk2_chr5_23574499_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Smoc1|Mir3067_chr12_81160595_F | TCGTCGGCAGCGTCTAAAGCCCAGGCCTTCCTTG | 59.9 | 0.07 |
| mm3_intergenic_Smoc1|Mir3067_chr12_81160595_R | GTCTCGTGGGCTCGGCACAGGCTTCTCCAGGTCTG | 60.0 | 0.07 |
| mm4_intron_Il13ra1_chrX_36123469_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Il13ra1_chrX_36123469_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intron_Capn8_chr1_182587799_F | TCGTCGGCAGCGTCTGGAGACACCAAAGGACAGAG | 59.3 | 0.07 |
| mm3_intron_Capn8_chr1_182587799_R | GTCTCGTGGGCTCGGCCTGGGCTCTCCTCTAAGGT | 60.0 | 0.07 |
| mm4_intergenic_Gm12071|Gm12070_chr11_26754867_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm12071|Gm12070_chr11_26754867_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_March3_chr18_56870655_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_March3_chr18_56870655_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm13375|Gm13377_chr2_21035948_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm13375|Gm13377_chr2_21035948_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Tshz2|AY702102_chr2_169928955_F | TCGTCGGCAGCGTCGCCACGGGAGTTCATTACCA | 60.0 | 0.06 |
| mm4_intergenic_Tshz2|AY702102_chr2_169928955_R | GTCTCGTGGGCTCGGCATACGAGGCCAAGCGGTAT | 59.9 | 0.06 |
| mm4_exon_Hjurp_chr1_88275465_F | TCGTCGGCAGCGTCGGGGAGACACGTAGCATACA | 58.8 | 0.06 |
| mm4_exon_Hjurp_chr1_88275465_R | GTCTCGTGGGCTCGGCGCTCCTTCAAGCTCCAGAG | 60.4 | 0.06 |
| mm4_intron_Magix_chrX_7679839_F | TCGTCGGCAGCGTCCCGGGTGGAATCACACTCTC | 60.1 | 0.06 |
| mm4_intron_Magix_chrX_7679839_R | GTCTCGTGGGCTCGGCCACACGGAGGGTAGGTACA | 60.6 | 0.06 |
| mm3_intergenic_Gm12155|Il12b_chr11_44389938_F | TCGTCGGCAGCGTCCACATTGGTCATCTGCAAGGC | 60.1 | 0.05 |
| mm3_intergenic_Gm12155|Il12b_chr11_44389938_R | GTCTCGTGGGCTCGGTGCAGGCACAAAGACAATGC | 59.9 | 0.05 |
| mm4_exon_Pced1b_chr15_97384931_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Pced1b_chr15_97384931_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Kif26a_chr12_112168762_F | TCGTCGGCAGCGTCCCTAAGCACCCTCCTCTCCT | 60.0 | 0.04 |
| mm4_exon_Kif26a_chr12_112168762_R | GTCTCGTGGGCTCGGGAAGTCGGTGGGGTAAGTGG | 60.0 | 0.04 |
| mm4_intergenic_Eva1a|Tacr1_chr6_82193194_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Eva1a|Tacr1_chr6_82193194_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ptprn2_chr12_116967810_F | TCGTCGGCAGCGTCAGAGCCAAGGTGGAAACTGC | 60.5 | 0.04 |
| mm4_intron_Ptprn2_chr12_116967810_R | GTCTCGTGGGCTCGGGCACATGAGGATGCTGGGAA | 60.3 | 0.04 |
| mm4_intergenic_Gm23669|Gm26791_chr14_118301384_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm23669|Gm26791_chr14_118301384_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Nrg3|Gm10713_chr14_39700733_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Nrg3|Gm10713_chr14_39700733_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tenm4|Rps11-ps5_chr7_96407310_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tenm4|Rps11-ps5_chr7_96407310_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Nr2f6_chr8_71381610_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Nr2f6_chr8_71381610_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm26688|Gm6245_chr13_40759826_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm26688|Gm6245_chr13_40759826_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Gtpbp1_chr15_79712323_F | TCGTCGGCAGCGTCGGGTGGACTGCTTCAGAGAC | 60.0 | 0.02 |
| mm4_intron_Gtpbp1_chr15_79712323_R | GTCTCGTGGGCTCGGAGAAGCAGCAGCAGACTCTG | 60.0 | 0.02 |
| mm4_intergenic_Mir5133|Gm25603_chr9_62152720_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Mir5133|Gm25603_chr9_62152720_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Dst_chr1_34137451_F | TCGTCGGCAGCGTCTGCTGGACCTCTTATTGGATCT | 58.6 | 0.02 |
| mm3_intron_Dst_chr1_34137451_R | GTCTCGTGGGCTCGGCAGCCAGATAGCACCACCTC | 60.1 | 0.02 |
| mm4_intron_Trpv4_chr5_114656371_F | TCGTCGGCAGCGTCCTGCGATTGTGTCCGCTCTA | 60.1 | 0.02 |
| mm4_intron_Trpv4_chr5_114656371_R | GTCTCGTGGGCTCGGGTCCAGAGTTGTGTGAGCCA | 59.8 | 0.02 |
| mm4_intron_Acan_chr7_79060703_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Acan_chr7_79060703_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tmpo|Rmst_chr10_91582151_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tmpo|Rmst_chr10_91582151_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dmkn_chr7_30778532_F | TCGTCGGCAGCGTCGCATTGCTCTTGCTTGCAGT | 60.0 | 0.01 |
| mm4_intron_Dmkn_chr7_30778532_R | GTCTCGTGGGCTCGGAGCAAGGAGGCCTTCAGTTC | 59.9 | 0.01 |
| mm4_intergenic_Jag1|Gm14055_chr2_137190177_F | TCGTCGGCAGCGTCTGGTGTGTGTGTCTGTGGAC | 60.1 | 0.01 |
| mm4_intergenic_Jag1|Gm14055_chr2_137190177_R | GTCTCGTGGGCTCGGGATTTTGATGCTGGGGCTGG | 59.5 | 0.01 |
| mm4_intergenic_Eif5al3-ps|Cox18_chr5_90135572_F | TCGTCGGCAGCGTCGGACCCCTCAGTTATCTGCC | 59.5 | 0.01 |
| mm4_intergenic_Eif5al3-ps|Cox18_chr5_90135572_R | GTCTCGTGGGCTCGGCCCGGGATATGGGTAAAGCC | 59.9 | 0.01 |
| mm2_intergenic_Sept2|Farp2_chr1_93511129_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intergenic_Sept2|Farp2_chr1_93511129_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Odf3l2|Madcam1_chr10_79655697_F | TCGTCGGCAGCGTCCTCGTATGGGTGGGGTGAAG | 59.8 | 0.01 |
| mm4_intergenic_Odf3l2|Madcam1_chr10_79655697_R | GTCTCGTGGGCTCGGGGCTGCACTTAAGGACTCCA | 59.6 | 0.01 |
| mm4_exon_Evpl_chr11_116220866_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Evpl_chr11_116220866_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Syce1l_chr8_113655130_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Syce1l_chr8_113655130_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm46|Serpina1f_chr12_103676607_F | TCGTCGGCAGCGTCTCTCCAATCATGCAGAGGGC | 59.8 | 0.01 |
| mm4_intergenic_Gm46|Serpina1f_chr12_103676607_R | GTCTCGTGGGCTCGGCTTCTGTCCTGGGCAGCTAC | 60.1 | 0.01 |
| mm4_intergenic_Kcnh8|Efhb_chr17_53290826_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Kcnh8|Efhb_chr17_53290826_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Trappc8|Rnf125_chr18_20902249_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Trappc8|Rnf125_chr18_20902249_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Lphn1_chr8_83931690_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Lphn1_chr8_83931690_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zfp541_chr7_16092273_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zfp541_chr7_16092273_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pvt1|Gm24810_chr15_62463399_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pvt1|Gm24810_chr15_62463399_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Gm24444|Mgmt_chr7_136877919_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Gm24444|Mgmt_chr7_136877919_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm2_intergenic_Larp4b|Dip2c_chr13_9193754_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm2_intergenic_Larp4b|Dip2c_chr13_9193754_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Fyn|Gm16365_chr10_39572835_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Fyn|Gm16365_chr10_39572835_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Itpr3|Itpr3/1700062I23Rik_chr17_27099159_F | TCGTCGGCAGCGTCTATGAGGAGCCTGGTGGTGA | 59.9 | 0.00 |
| mm4_intergenic_Itpr3|Itpr3/1700062I23Rik_chr17_27099159_R | GTCTCGTGGGCTCGGGAGCCTGACAGCCCTTATCC | 59.8 | 0.00 |
| mm4_intergenic_Ankrd1|Pcgf5_chr19_36261999_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ankrd1|Pcgf5_chr19_36261999_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tex15_chr8_33557105_F | TCGTCGGCAGCGTCTTAGTCCTAACTCACCGGCA | 58.0 | 0.00 |
| mm4_intron_Tex15_chr8_33557105_R | GTCTCGTGGGCTCGGCACGCATCTCTGACCTACGT | 59.5 | 0.00 |
| mm4_intron_Stab2_chr10_86858267_F | TCGTCGGCAGCGTCGAAAGAGGCCTCCCTTCACC | 60.0 | 0.00 |
| mm4_intron_Stab2_chr10_86858267_R | GTCTCGTGGGCTCGGAGGGTGCTTAGCAATCACCC | 60.0 | 0.00 |
| mm4_intron_Samd4_chr14_47066693_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Samd4_chr14_47066693_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Park2_chr17_11863549_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Park2_chr17_11863549_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fmn2_chr1_174663368_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fmn2_chr1_174663368_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Adamts18_chr8_113796531_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Adamts18_chr8_113796531_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r160|Gm4214_chr7_22891070_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r160|Gm4214_chr7_22891070_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r123|Vmn1r124_chr7_21182039_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r123|Vmn1r124_chr7_21182039_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r118|Vmn1r119_chr7_20936636_F | TCGTCGGCAGCGTCCCAACCCTGGAGGAGGAAAC | 59.9 | 0.00 |
| mm4_intergenic_Vmn1r118|Vmn1r119_chr7_20936636_R | GTCTCGTGGGCTCGGCTCAGCAGGACATCCCAGTC | 59.8 | 0.00 |
| mm4_intergenic_Vmn1r111|Gm10668_chr7_20722250_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r111|Gm10668_chr7_20722250_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r-ps77|Gm5891_chr7_21907154_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r-ps77|Gm5891_chr7_21907154_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r-ps75|Gm6882_chr7_21424344_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn1r-ps75|Gm6882_chr7_21424344_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tiparp|mmu-mir-8120_chr3_65601760_F | TCGTCGGCAGCGTCTCTTCGGACAAGTGCAGACC | 59.9 | 0.00 |
| mm4_intergenic_Tiparp|mmu-mir-8120_chr3_65601760_R | GTCTCGTGGGCTCGGACTGAATGAAGCAGGCTTTGG | 59.1 | 0.00 |
| mm4_intergenic_Snx29|Cpped1_chr16_11759559_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Snx29|Cpped1_chr16_11759559_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rpsa-ps10|Mir3963_chr3_150107598_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rpsa-ps10|Mir3963_chr3_150107598_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rell1|Gm15819_chr5_63917666_F | TCGTCGGCAGCGTCAACCCTGGCTCCCCATCTAT | 60.0 | 0.00 |
| mm4_intergenic_Rell1|Gm15819_chr5_63917666_R | GTCTCGTGGGCTCGGAGGCCAAAGTCCAGTGAAGG | 59.8 | 0.00 |
| mm4_intergenic_Mtx3|Cmya5_chr13_93035921_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mtx3|Cmya5_chr13_93035921_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Jph4|Gm23596_chr14_55154416_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Jph4|Gm23596_chr14_55154416_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8693|Gm4567_chr7_22711336_F | TCGTCGGCAGCGTCCAAACCAACCCTGGAGGAGG | 60.2 | 0.00 |
| mm4_intergenic_Gm8693|Gm4567_chr7_22711336_R | GTCTCGTGGGCTCGGCTCAGCAGGACATCCCAGTC | 59.8 | 0.00 |
| mm4_intergenic_Gm8453|Gm4558_chr7_22253770_F | TCGTCGGCAGCGTCCCAACCCTGGAGGAGGAAAC | 59.9 | 0.00 |
| mm4_intergenic_Gm8453|Gm4558_chr7_22253770_R | GTCTCGTGGGCTCGGCTCAGCAGGACATCCCAGTC | 59.8 | 0.00 |
| mm4_intergenic_Gm8215|Gm5390_chrX_62091229_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8215|Gm5390_chrX_62091229_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm4498|Gm4133_chr7_20258112_F | TCGTCGGCAGCGTCCCAACCCTGGAGGAGGAAAC | 59.9 | 0.00 |
| mm4_intergenic_Gm4498|Gm4133_chr7_20258112_R | GTCTCGTGGGCTCGGCTCAGCAGGACATCCCAGTC | 59.8 | 0.00 |
| mm4_intergenic_Gm4220|Gm6902_chr7_23270526_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm4220|Gm6902_chr7_23270526_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm4201|Vmn1r155_chr7_22579814_F | TCGTCGGCAGCGTCCAAACCAACCCTGGAGGAGG | 60.2 | 0.00 |
| mm4_intergenic_Gm4201|Vmn1r155_chr7_22579814_R | GTCTCGTGGGCTCGGCTCAGCAGGACATCCCAGTC | 59.8 | 0.00 |
| mm4_intergenic_Gm4179|Gm6176_chr7_22047930_F | TCGTCGGCAGCGTCCAAACCAACCCTGGAGGAGG | 60.2 | 0.00 |
| mm4_intergenic_Gm4179|Gm6176_chr7_22047930_R | GTCTCGTGGGCTCGGCTCAGCAGGACATCCCAGTC | 59.8 | 0.00 |
| mm4_intergenic_Gm4172|Vmn1r132_chr7_21565122_F | TCGTCGGCAGCGTCCAAACCAACCCTGGAGGAGG | 60.2 | 0.00 |
| mm4_intergenic_Gm4172|Vmn1r132_chr7_21565122_R | GTCTCGTGGGCTCGGCTCAGCAGGACATCCCAGTC | 59.8 | 0.00 |
| mm4_intergenic_Gm4141|Vmn1r107_chr7_20590707_F | TCGTCGGCAGCGTCCAAACCAACCCTGGAGGAGG | 60.2 | 0.00 |
| mm4_intergenic_Gm4141|Vmn1r107_chr7_20590707_R | GTCTCGTGGGCTCGGCTCAGCAGGACATCCCAGTC | 59.8 | 0.00 |
| mm4_intergenic_Gm26562|Cpn2_chr16_30237776_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26562|Cpn2_chr16_30237776_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm21989|Asap2_chr12_21089089_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm21989|Asap2_chr12_21089089_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm16456|Gm10662_chr7_23130343_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm16456|Gm10662_chr7_23130343_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Arrdc2|Kcnn1_chr8_70841052_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Arrdc2|Kcnn1_chr8_70841052_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Akap11|Dgkh_chr14_78549898_F | TCGTCGGCAGCGTCCAGGGGAGGGTAAACTGAAACT | 59.6 | 0.00 |
| mm4_intergenic_Akap11|Dgkh_chr14_78549898_R | GTCTCGTGGGCTCGGATATGATGGGTACTTTCGTTTACAC | 57.2 | 0.00 |
| mm4_intergenic_AL596090.1|Gm12266_chr11_60304660_F | TCGTCGGCAGCGTCGAGGATCCCTTCAGAAACGGT | 59.4 | 0.00 |
| mm4_intergenic_AL596090.1|Gm12266_chr11_60304660_R | GTCTCGTGGGCTCGGGCCCAGTATCCCAGTAACCC | 59.5 | 0.00 |
| mm4_intergenic_5830416P10Rik|4833407H14Rik_chr19_53456855_F | TCGTCGGCAGCGTCGGCCACGTGACTCTATTCCA | 59.4 | 0.00 |
| mm4_intergenic_5830416P10Rik|4833407H14Rik_chr19_53456855_R | GTCTCGTGGGCTCGGGTAGCAGCAGAAGGGCCC | 60.1 | 0.00 |
| mm3_intron_Adamtsl3_chr7_82543763_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Adamtsl3_chr7_82543763_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314161 |
GAGCCACGGTCTGCTGGAGCGGCCATGCTTGGCCCGGGACCCCCAGTCCCCTCCGCGGACAGCCTCTCTGGCCAAGGGCA ACCTAGTAGCTCAGACACCGAATCGGATTTCTATGAAGAAATCGAGGTGAGCTGCA |
| mm3_intergenic_Pvrl3|Gm6912_chr16_46600873 |
GAGCACAGTCATCTTGGCCTTCCAAAAACATCTGTATCCTAGTGCAACCTAGTAGTTCATAGGCTATTTAAATCTTGCAG TTAATAGGAATCATAGTCAAATTTTGTCCAAAAGAAATCAATTGTCTGTCTGGCT |
| mm4_intergenic_Stc2|Bod1_chr11_31380140 |
GATCAGAGCAGGAGCAGTGGTTGTGGCCATTCTTTGCTGGGCAACTAAGCTGCCCTGGGTACTGTGTCACACTGTCAGAA GCAGGGAGCAGGGTCAATGGGTTGCTGCCTTTCC |
| mm4_intron_4930523C07Rik_chr1_160048536 |
AAGGACAGTGACGAGAGGGACCTTTCCCCTCTCTAAGCAGCAAAGGAACAATCTACAGCAGACTCTCTGCAGGACAATCC CTAGGGCTACCTGCCAGCTCAGGTGTCTTTTCCCAACATTGTCCAGTGCT |
| mm4_intron_Col18a1_chr10_77119205 |
ATCCCGGCTACCTGGTTACTTCCACCCTCCTCGGGTGCCCTAGGGCATCCCCGTGGCTCAGCCAAGCACAGGCCTCTAAA CTCCCG |
| mm4_intergenic_Peli2|Gm6498_chr14_48190376 |
TTGTGTTGGTAGGCTCCACCTAAAGCCATTGTTTGCATTGCCTGCAGGTGCAGTAAATCATTGCTTTTGCACTGCAAGCT TCTCCCAGGGCTGCCTAGTTGCTCTGGGTTTATGGGGAGGCAACAAGGGAAAT |
| mm4_intron_Kctd14_chr7_97457350 |
AGGACTGTTGCCATGGCTACCCTGCTTTCCTGAGCAACTTAGTTGCCTTTGGCTCTCTAACTCCAGTACTGTACTTATGT CTTAAGAGGCAGTACCCAGACAGGTTGAGAGATGAGGGCTCCACA |
| mm3_exon_Tonsl_chr15_76630490 |
GAATCTTCTCAACCCCGGGGCCAGGGAATACACTTAACTGCTCATCTTACCTTGGAAGGCACCGCCCAGGGCAGCCTGGT GGCTCAGGAAGAAACTGGAGCTGAAGCCACA |
| mm4_intergenic_Gm14263|Gm14266_chr2_171017400 |
TCACGAGCATAGAGGAGACCAGACAAGGATTCCATAAGTGGTCCCATGAGCAACCAAGTATCTCAGCAAGACCACTACCA GCTGCA |
| mm4_intergenic_2810407A14Rik|Grik1_chr16_87858367 |
AAAGTATGCTGAACCGGCCACCTTGGTTTGGATGGTTGGTCTCTCAAATACACTCTGAGCATCTGGCTTGCCCTTGGAGG CTGTGTGCACTGCTTCCTA |
| mm3_intergenic_Homer1|Jmy_chr13_93421032 |
TGTAGAGACGGGGCAAACACCTGAGGTCCTAGGTTGTCCTGGGGCTGCCTTTCCTCTACCTGGCTTGAACTTTACCATGC CTCAAAACCAGGCTCCCAT |
| mm3_intergenic_Ahcy|2310005A03Rik_chr2_155082519 |
CTAGGAAGGAGGAGCCCAGTCCTAAGGGCAACCTTGTACCTCTGAGGTTAGCCTTAGCCAGGCTGGAGTCGCCTTTCGCT GACTCTGCCAGGCGGGGGCACCCTGCACCCAGCTTTGACTTCAGCCCGAGGT |
| mm3_intron_Kalrn_chr16_34430997 |
AAAAGGGTGATGCCACGAGTGGGCAGGGAGGCACACTGCCACCACTGGGGTGCTGGTGTGACAGGGAGCTGGGGGCTGGT ACTAAGCTCCTAGGCTGCCCTGGGCTTCTGCAGAACCTCTTTTCCCCATCCCTGG |
| mm4_intergenic_Obscn|Iba57_chr11_59138636 |
CCCCATGCCCTTCTAGAACGAATTTCCAAGGGCAACCCCCGAGCTCAGCCTCACCTTAGACCCCGGGCCTGTGACTTCCC CCACTCCCGGGAAATTCTTTCCTGGAGTCAAGTGTCAGTACCCCTCTGGCTGTC |
| mm4_intergenic_Gm22199|Spin1_chr13_51091441 |
TGGCTGGGGATCGATTTGAAAATCTAAGGATTCCATCTACAGCTTCTAAACATTCTTCAGTAGACCCAGAGCAACCGAGT AGCAAAGAGACTTTATCGTTGGTAGATAAACTCCTGAACCAACTTTTCCACCC |
| mm3_intergenic_Smoc1|Mir3067_chr12_81160595 |
TAAAGCCCAGGCCTTCCTTGTTGTCTGTCCTTTTCCTGCAGTCTGCCTCTTCTCCAGATTCTCAGCCACTAGGCTGCCCT GGGGTAGCCCCAGTACCAGACACCCATGTGCTCTCAGACCTGGAGAAGCCTGTG |
| mm3_intron_Capn8_chr1_182587799 |
TGGAGACACCAAAGGACAGAGCTGAGCTACCAGGCTGACCTGGGGAGAGGGCAAAGGTGAAGGGTGACCTTAGAGGAGAG CCCAGG |
| mm4_intergenic_Tshz2|AY702102_chr2_169928955 |
GCCACGGGAGTTCATTACCATAGCGACTGAGCTGGCAGGCTGCCCTGGGGAACCCACAAGTGCCAGCTTCCACCTTCCTT GTGTAGATCATGGAAGTCCTGACCGGATACCGCTTGGCCTCGTATG |
| mm4_exon_Hjurp_chr1_88275465 |
GGGGAGACACGTAGCATACATTTAACCTCATCTTGGGAGTCAGTGCTTTCCTAGGGCGATCTAGAAGCCCAGGACAGAGA AGCCCACGTACAGAGAACTCTGGAGCTTGAAGGAGCG |
| mm4_intron_Magix_chrX_7679839 |
CCGGGTGGAATCACACTCTCTAACAGTCCCAGGGCTAGCTAGAAGCCCAGCCCCTCCTGCCCCGCCCTACCAAGTCCTTG TACCTACCCTCCGTGTGG |
| mm3_intergenic_Gm12155|Il12b_chr11_44389938 |
CACATTGGTCATCTGCAAGGCAGATTGTCTTAAGGCAACCTGGTAGCTCACCCTCATTCAGGGCATGATCAGAGCATTGT CTTTGTGCCTGCA |
| mm4_exon_Kif26a_chr12_112168762 |
CCTAAGCACCCTCCTCTCCTCCCCAGGGCTGCCCAGAAGCTCAGCCTGGCCTCCAAGCGCAAGAAGCATCACCCGCCGCC TGCGCCCTCCACCCGAGGCACATCCACTTACCCCACCGACTTC |
| mm4_intron_Ptprn2_chr12_116967810 |
AGAGCCAAGGTGGAAACTGCCTTAGCATACTCCTTGTCTGTAATTTAGAACAGCTCTATTCAGTAACAACCAGAGAACCA GCTAGCTGAGCCTCTCTGTTGCCCTGGGGAATGTCAGTGTTTCCCAGCATCCTCATGTGC |
| mm4_intron_Gtpbp1_chr15_79712323 |
GGGTGGACTGCTTCAGAGACTCAGAGAGCACCTTCTGCATCCTGTCTGTGCTAGTAGGTTAGCCTCGGGGTCCATCAGAC AGAGTCTGCTGCTGCTTCT |
| mm3_intron_Dst_chr1_34137451 |
TGCTGGACCTCTTATTGGATCTCATTTGGCTTCAGTAATGTTATCTGAGCTAGTAGGTAGGCCTGGGTTCTAAGCAAATG AGGACCTTTAGAGGTGGTGCTATCTGGCTG |
| mm4_intron_Trpv4_chr5_114656371 |
CTGCGATTGTGTCCGCTCTACAGCTAAAAGGATCTTGCTATACCACACAAACAATGGTGGCATCTCCCCCTTCCCACCCA CCCCCCAACTTTCAGAGCTTCTAAGTTGGCCTTGGCCTGGCTCACACAACTCTGGAC |
| mm4_intron_Dmkn_chr7_30778532 |
GCATTGCTCTTGCTTGCAGTTGTGGGGCAGCAGCTGGAGTAGAGGATAGCATCCCAGCGCATCCTAGAAGCTAAGCTTTG GGACTTTTGGTTGGTGGGGAACTGAAGGCCTCCTTGCT |
| mm4_intergenic_Jag1|Gm14055_chr2_137190177 |
TGGTGTGTGTGTCTGTGGACTTTGCTGAGATACTAGGTTGGACAGGGACACCCTACTCTCTCCAAAGCCCCAGCCCCAGC ATCAAAATC |
| mm4_intergenic_Eif5al3-ps|Cox18_chr5_90135572 |
GGACCCCTCAGTTATCTGCCTTACCCACATCCCAGGGCCTCCTAGTATCTAAGCCTTTCCTATACCCTAGGGCCACCTAG CACTTAGGCCTTACCAATACTTCAGAGCCTCAATGACCCAGGCTTTACCCATATCCCGGG |
| mm4_intergenic_Odf3l2|Madcam1_chr10_79655697 |
CTCGTATGGGTGGGGTGAAGCATGGAGATGTGGAAGGGAGGGTACTGAGCCTATAGGTGGCCCTTGGTGGCTGGGGAGGG CTAGAGAAAGGCAATCTCTGAGGGTAGGATGTGGAGTCCTTAAGTGCAGCC |
| mm4_intergenic_Gm46|Serpina1f_chr12_103676607 |
TCTCCAATCATGCAGAGGGCCATATCTCCAGGGGCAAACTAGGAGCTCTGGGGCCCAGGCCCCAGGCCAGAAGAAAGTAA GTTTTACTTACAGGACATATACTGTGAGTCTGACTCACCTGTAGCTGCCCAGGACAGAAG |
| mm4_intergenic_Itpr3|Itpr3/1700062I23Rik_chr17_27099159 |
TATGAGGAGCCTGGTGGTGAGGCTTGGCCCCTCCTCAGTTCCTTCCTGGCCCCGCCTCAGCCCCCTCCAACCTAGTAGCT CAGGGGCTGGGAAGCCCTCGAGTCTGGCTTGTCTTAAAGGATAAGGGCTGTCAGGCTC |
| mm4_intron_Tex15_chr8_33557105 |
TTAGTCCTAACTCACCGGCATCCTAGTGGAAGCTAGTAGCTCTGATTATTGTCAGTAGTGTGTAATTTCTTTGATAAGCT GAAGTAGTGTAACTGTATGTCATTTGTTTTTACGTAGGTCAGAGATGCGTG |
| mm4_intron_Stab2_chr10_86858267 |
GAAAGAGGCCTCCCTTCACCCTGCGCCCCACTGTGAAGAGTCAGCCTCACCTACTAGGTTTCCCCAGGACCCTTCAGGAG ATTCATAAATGGCAGAGAGAGGGGGTGATTGCTAAGCACCCT |
| mm4_intergenic_Vmn1r118|Vmn1r119_chr7_20936636 |
CCAACCCTGGAGGAGGAAACTGATTTGGGAACAGGGTAGAGATTAGGAACATGTGTCCCAGAAAAGGACTGATTTTCTTG TGCAAACAGCCCAAGGGGAACCTGGAAGCTCTGGGGGACTGGGATGTCCTGCTGAG |
| mm4_intergenic_Tiparp|mmu-mir-8120_chr3_65601760 |
TCTTCGGACAAGTGCAGACCAACGGCCCCATCATAATGCTTATTGCTGGTGTCAGGCCGAGTCTGGCATCTCCCTAGTGA AACTAAGTAGCTCAGTGAGAATGAGACATTATCCAAAGCCTGCTTCATTCAGT |
| mm4_intergenic_Rell1|Gm15819_chr5_63917666 |
AACCCTGGCTCCCCATCTATAAAATGGGGATGTTAGTGTTTCCCACAACTGCCCAGAGCACCCTGGTAACTCAGACCTTC ACTGGACTTTGGCCT |
| mm4_intergenic_Gm8693|Gm4567_chr7_22711336 |
CAAACCAACCCTGGAGGAGGAAGCTGATTTGGGAACAGGTTAGAGATTAGGAACATGTGTCCCAGAAAGGACTGATCTTC TTGTGCAAGCAGCCCAAGGGGAACCTGGAAGCTCTGGGGGACTGGGATGTCCTGCTGAG |
| mm4_intergenic_Gm8453|Gm4558_chr7_22253770 |
CCAACCCTGGAGGAGGAAACTGATTTGGGAACAGGGTAGAGATTAGGAACATGTGTCCCAGAAAAGGACTGATTTTCTTG TGCAAACAGCCCAAGGGGAACCTGGAAGCTCTGGGGGACTGGGATGTCCTGCTGAG |
| mm4_intergenic_Gm4498|Gm4133_chr7_20258112 |
CCAACCCTGGAGGAGGAAACTGATTTGGGAACAGGGTAGAGATTAGGAACATGTGTCCCAGAAAAGGACTGATTTTCTTG TGCAAACAGCCCAAGGGGAACCTGGAAGCTCTGGGGGACTGGGATGTCCTGCTGAG |
| mm4_intergenic_Gm4201|Vmn1r155_chr7_22579814 |
CAAACCAACCCTGGAGGAGGAAGCTGATTTGGGAACAGGTTAGAGATTAGGAACATGTGTCACAGAAAGGACTGATCTTC TTGTGCAAGCAGCCCAAGGGGAACCTGGAAGCTCTGGGGGACTGGGATGTCCTGCTGAG |
| mm4_intergenic_Gm4179|Gm6176_chr7_22047930 |
CAAACCAACCCTGGAGGAGGAAGCTGATTTGGGAACAGGTTAGAGATTAGGAACATGTGTCCCAGAAAGGACTGATCTTC TTGTGCAAGCAGCCCAAGGGGAACCTGGAAGCTCTGGGGGACTGGGATGTCCTGCTGAG |
| mm4_intergenic_Gm4172|Vmn1r132_chr7_21565122 |
CAAACCAACCCTGGAGGAGGAAGCTGATTTGGGAACAGGTTAGAGATTAGGAACATGTGTCCCAGAAAGGACTGATCTTC TTGTGCAAGCAGCCCAAGGGGAACCTGGAAGCTCTGGGGGACTGGGATGTCCTGCTGAG |
| mm4_intergenic_Gm4141|Vmn1r107_chr7_20590707 |
CAAACCAACCCTGGAGGAGGAAGCTGATTTGGGAACAGGTTAGAGATTAGGAACATGTGTCACAGAAAGGACTGATCTTC TTGTGCAAGCAGCCCAAGGGGAACCTGGAAGCTCTGGGGGACTGGGATGTCCTGCTGAG |
| mm4_intergenic_Akap11|Dgkh_chr14_78549898 |
CAGGGGAGGGTAAACTGAAACTAAGTATATTTGAAAGAGCCCTAGAGGAACCTAGTAGGTAAGTTANNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAAACGAAAGTACCCATCATAT |
| mm4_intergenic_AL596090.1|Gm12266_chr11_60304660 |
GAGGATCCCTTCAGAAACGGTTTGACTATGCTGAGCAGCTAGGTTTCCTTGGGTAAGGAAGTGAGGAGGTATATATTTTG GAACAAGATAGGTCCAGAGTCAAACCTCACTTAGGGGTTACTGGGATACTGGGC |
| mm4_intergenic_5830416P10Rik|4833407H14Rik_chr19_53456855 |
GGCCACGTGACTCTATTCCAACAACCAGAGACCATGTGACTCTATTCCAACAACAATCAGAGACAGTGTGACTCTATTCC AAGTACTGAGCTACTAAGGAGCACTGGGGAACTAAGGCCTGGGCCCTTCTGCTGCTAC |