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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314076_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314076_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intergenic_Gm22965|Ift81_chr5_122512138_F | Primer3: not found at this Tm | N.d. | 0.58 |
| mm4_intergenic_Gm22965|Ift81_chr5_122512138_R | Primer3: not found at this Tm | N.d. | 0.58 |
| mm4_intergenic_Phex|Gm1947_chrX_157421761_F | Primer3: not found at this Tm | N.d. | 0.51 |
| mm4_intergenic_Phex|Gm1947_chrX_157421761_R | Primer3: not found at this Tm | N.d. | 0.51 |
| mm3_intergenic_Tbc1d22a|Gm23416_chr15_86577417_F | Primer3: not found at this Tm | N.d. | 0.51 |
| mm3_intergenic_Tbc1d22a|Gm23416_chr15_86577417_R | Primer3: not found at this Tm | N.d. | 0.51 |
| mm3_exon_Tmem8_chr17_26113430_F | Primer3: not found at this Tm | N.d. | 0.50 |
| mm3_exon_Tmem8_chr17_26113430_R | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intron_Vstm2l_chr2_157921742_F | TCGTCGGCAGCGTCGAGTGTGTAGGCAGTCCCTG | 59.7 | 0.48 |
| mm4_intron_Vstm2l_chr2_157921742_R | GTCTCGTGGGCTCGGCCTGTGGGTTCTTTCAGGCA | 60.1 | 0.48 |
| mm4_intergenic_Agap1|Gm25180_chr1_89462071_F | TCGTCGGCAGCGTCTGCAGGTCAGTGTTAGCCAC | 60.2 | 0.40 |
| mm4_intergenic_Agap1|Gm25180_chr1_89462071_R | GTCTCGTGGGCTCGGTGTGAGCAAGGCCTGAGATC | 59.7 | 0.40 |
| mm4_intron_Aagab_chr9_63610343_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intron_Aagab_chr9_63610343_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm3_intergenic_Nphp4|Gm13172_chr4_152617015_F | Primer3: not found at this Tm | N.d. | 0.34 |
| mm3_intergenic_Nphp4|Gm13172_chr4_152617015_R | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intron_Itgb2l_chr16_96434098_F | TCGTCGGCAGCGTCTAAGTGCAAGTTCAGGGCCC | 60.2 | 0.32 |
| mm4_intron_Itgb2l_chr16_96434098_R | GTCTCGTGGGCTCGGTCGGTCCCAGGCTCTCTTTA | 59.9 | 0.32 |
| mm4_intergenic_Gm23926|Gm25115_chr14_86395723_F | TCGTCGGCAGCGTCCAGCTGGCGATCAGTCTTCT | 59.8 | 0.32 |
| mm4_intergenic_Gm23926|Gm25115_chr14_86395723_R | GTCTCGTGGGCTCGGAGAGGCATTTCAGACCCTGC | 60.0 | 0.32 |
| mm4_intergenic_Gm16232|Pigk_chr3_152893378_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Gm16232|Pigk_chr3_152893378_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_exon_Srrm3_chr5_135857187_F | TCGTCGGCAGCGTCCAGAACGGAGGCAGCAGG | 60.4 | 0.29 |
| mm4_exon_Srrm3_chr5_135857187_R | GTCTCGTGGGCTCGGACAAACCCTCCACAAAGCCA | 60.0 | 0.29 |
| mm4_intron_Gpr133_chr5_129174821_F | TCGTCGGCAGCGTCTCAGAAGGAGATGGAGTGGGT | 59.9 | 0.28 |
| mm4_intron_Gpr133_chr5_129174821_R | GTCTCGTGGGCTCGGAGCAGAACCATCAGCTGAGT | 59.0 | 0.28 |
| mm4_intron_Efcab6_chr15_84006913_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Efcab6_chr15_84006913_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Tinagl1|Gm853_chr4_130192424_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Tinagl1|Gm853_chr4_130192424_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_Vps13d_chr4_145193535_F | TCGTCGGCAGCGTCACACAATGTGAAGCTGACTACCT | 59.9 | 0.25 |
| mm4_intron_Vps13d_chr4_145193535_R | GTCTCGTGGGCTCGGGGAGAGTTGGCTTTTAGGGCT | 59.9 | 0.25 |
| mm4_intron_Skap1_chr11_96657296_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Skap1_chr11_96657296_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Cecr5_chr6_120521901_F | TCGTCGGCAGCGTCCTCGGACCTCAGCATTGTGT | 60.0 | 0.23 |
| mm4_intron_Cecr5_chr6_120521901_R | GTCTCGTGGGCTCGGAGCCAGTCCTTCTCGATTGC | 60.1 | 0.23 |
| mm4_intron_Zfp384_chr6_125014505_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Zfp384_chr6_125014505_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Nav2_chr7_49192026_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Nav2_chr7_49192026_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_intron_Ccz1_chr5_143998511_F | TCGTCGGCAGCGTCGAGAGCTCCCTTTCGGATCG | 59.9 | 0.21 |
| mm3_intron_Ccz1_chr5_143998511_R | GTCTCGTGGGCTCGGGCCTGGGAATCTTCAGCACT | 60.0 | 0.21 |
| mm4_intergenic_AI182371|Cep110_chr2_35107522_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_AI182371|Cep110_chr2_35107522_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Ptcd1_chr5_145153088_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Ptcd1_chr5_145153088_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Itpr1_chr6_108536882_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Itpr1_chr6_108536882_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm3_intergenic_Mfsd11|Mgat5b_chr11_116918706_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm3_intergenic_Mfsd11|Mgat5b_chr11_116918706_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm12158|Ebf1_chr11_44823988_F | TCGTCGGCAGCGTCTCGTGGCAGAATTTCATAAGTGA | 58.4 | 0.18 |
| mm4_intergenic_Gm12158|Ebf1_chr11_44823988_R | GTCTCGTGGGCTCGGCAAAGTCTCACACACTCTAGGC | 58.6 | 0.18 |
| mm4_intergenic_Kif12|Col27a1_chr4_63186784_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Kif12|Col27a1_chr4_63186784_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Tyk2_chr9_21118216_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Tyk2_chr9_21118216_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Trappc10|Agpat3_chr10_78252121_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Trappc10|Agpat3_chr10_78252121_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Cdh13_chr8_119288482_F | TCGTCGGCAGCGTCGCATGATCAGAGAGCAGCCT | 59.8 | 0.15 |
| mm4_intron_Cdh13_chr8_119288482_R | GTCTCGTGGGCTCGGGCCGTGTACCGAGCATAGAA | 59.8 | 0.15 |
| mm3_intron_Osbpl2_chr2_180143412_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intron_Osbpl2_chr2_180143412_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm24365|Bag3_chr7_128514351_F | TCGTCGGCAGCGTCGCCCAGCCCTAACTAGGAGA | 60.3 | 0.14 |
| mm4_intergenic_Gm24365|Bag3_chr7_128514351_R | GTCTCGTGGGCTCGGTGTGTTATACAGCCGTGGGG | 59.7 | 0.14 |
| mm4_intron_Megf11_chr9_64485140_F | TCGTCGGCAGCGTCCAGCTGACTGGACTTGGAGG | 60.0 | 0.14 |
| mm4_intron_Megf11_chr9_64485140_R | GTCTCGTGGGCTCGGCGGGGACAGAATCTGCTGAC | 60.4 | 0.14 |
| mm4_intergenic_Bicc1|Tfam_chr10_71224828_F | TCGTCGGCAGCGTCCCCACAGGAGGTAGTCAGGA | 59.9 | 0.14 |
| mm4_intergenic_Bicc1|Tfam_chr10_71224828_R | GTCTCGTGGGCTCGGGCTAGGATAAGGAGCCTGCG | 60.0 | 0.14 |
| mm3_intron_Rnf180_chr13_105247771_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intron_Rnf180_chr13_105247771_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Nckap5_chr1_126593451_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Nckap5_chr1_126593451_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Tbx4_chr11_85912703_F | TCGTCGGCAGCGTCCAACACTGACCTGGGACCAG | 60.2 | 0.13 |
| mm4_intron_Tbx4_chr11_85912703_R | GTCTCGTGGGCTCGGAGGATCTTGAGGACCCACGA | 59.9 | 0.13 |
| mm4_exon_Dleu7/Rnaseh2b_chr14_62292782_F | TCGTCGGCAGCGTCGATGCTCCCGCGTCCCAG | 62.8 | 0.13 |
| mm4_exon_Dleu7/Rnaseh2b_chr14_62292782_R | GTCTCGTGGGCTCGGTACTACAGCAGGAGTGGGGC | 60.9 | 0.13 |
| mm4_intergenic_Cbx6/Nptxr/Npcd|Apobec3_chr15_79848179_F | TCGTCGGCAGCGTCTCCGCCGATCATTCCATACC | 59.6 | 0.13 |
| mm4_intergenic_Cbx6/Nptxr/Npcd|Apobec3_chr15_79848179_R | GTCTCGTGGGCTCGGCACTGGGATGCTGGCTAGAG | 59.8 | 0.13 |
| mm4_exon_Tcof1_chr18_60832425_F | TCGTCGGCAGCGTCGGCTGAGACCTCTGAGGACT | 60.3 | 0.12 |
| mm4_exon_Tcof1_chr18_60832425_R | GTCTCGTGGGCTCGGGCAGCTCTCAGGGTCCAAAT | 60.0 | 0.12 |
| mm4_intron_Smek2_chr11_29189434_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Smek2_chr11_29189434_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Kctd1_chr18_15104561_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Kctd1_chr18_15104561_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intergenic_6330418K02Rik|Gal3st4/Gpc2/6330418K02Rik_chr5_138264413_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_6330418K02Rik|Gal3st4/Gpc2/6330418K02Rik_chr5_138264413_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Ppp2r3a|Gm24638_chr9_101276210_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Ppp2r3a|Gm24638_chr9_101276210_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Sbf1_chr15_89313542_F | TCGTCGGCAGCGTCCTCACCACCATCCAAGTCCA | 59.3 | 0.11 |
| mm4_intron_Sbf1_chr15_89313542_R | GTCTCGTGGGCTCGGGAGGAAACCAAGCTGGCTGA | 60.2 | 0.11 |
| mm4_intergenic_Zfp428|Irgq_chr7_24529675_F | TCGTCGGCAGCGTCGGTCATTCCTGGCAGGTAGT | 59.0 | 0.10 |
| mm4_intergenic_Zfp428|Irgq_chr7_24529675_R | GTCTCGTGGGCTCGGACTGCCAGAAAGAGGGGTTG | 59.8 | 0.10 |
| mm4_intergenic_Gm26674/Sash1|Gm9930_chr10_8916734_F | TCGTCGGCAGCGTCCGGAGGTGATCGCTTTGTTT | 58.8 | 0.10 |
| mm4_intergenic_Gm26674/Sash1|Gm9930_chr10_8916734_R | GTCTCGTGGGCTCGGAGCGTACAGACAGCATAGCA | 59.1 | 0.10 |
| mm4_intron_Grik4_chr9_42720790_F | TCGTCGGCAGCGTCGTTTGGCCTGTTCTGCACTG | 59.9 | 0.09 |
| mm4_intron_Grik4_chr9_42720790_R | GTCTCGTGGGCTCGGGGCGGGATCTTTACGCTCTA | 59.3 | 0.09 |
| mm4_intron_Sh3bp4_chr1_89125777_F | TCGTCGGCAGCGTCAGGAAGAGGGTGGTTTGTGC | 60.1 | 0.09 |
| mm4_intron_Sh3bp4_chr1_89125777_R | GTCTCGTGGGCTCGGTGCAGATACTGACAAGTAGTATCGA | 59.1 | 0.09 |
| mm4_intron_Tll2_chr19_41189268_F | TCGTCGGCAGCGTCTGAGGTCACAGGAACCGAGA | 60.1 | 0.09 |
| mm4_intron_Tll2_chr19_41189268_R | GTCTCGTGGGCTCGGCATGCGGTGCCAAAGTGAAG | 60.3 | 0.09 |
| mm4_intergenic_Hbq1a|Sh3pxd2b_chr11_32307316_F | TCGTCGGCAGCGTCTCACAGTAACAAGGCAGGCC | 60.2 | 0.09 |
| mm4_intergenic_Hbq1a|Sh3pxd2b_chr11_32307316_R | GTCTCGTGGGCTCGGCTTCACCCACCTGCTTCCTC | 60.3 | 0.09 |
| mm3_intergenic_Map3k7cl|Gm22808_chr16_87604086_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Map3k7cl|Gm22808_chr16_87604086_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Fmo3_chr1_162957595_F | TCGTCGGCAGCGTCGTTGCCCACAGCTATGTCCT | 60.0 | 0.09 |
| mm4_intron_Fmo3_chr1_162957595_R | GTCTCGTGGGCTCGGGCAGCCAGCATCCTCTCATA | 59.6 | 0.09 |
| mm3_intergenic_Ttyh3|Iqce_chr5_140659731_F | TCGTCGGCAGCGTCAGGAAGTAGCCGAGTGGAGT | 59.9 | 0.09 |
| mm3_intergenic_Ttyh3|Iqce_chr5_140659731_R | GTCTCGTGGGCTCGGCCTCCCTTGGCACATGTGAT | 60.0 | 0.09 |
| mm4_intron_Foxo3_chr10_42205329_F | TCGTCGGCAGCGTCTCCATTCCTTCCAGCCAAGC | 60.3 | 0.09 |
| mm4_intron_Foxo3_chr10_42205329_R | GTCTCGTGGGCTCGGGTGGAGTGGGAAGTGTGAGG | 59.9 | 0.09 |
| mm3_intergenic_Wnt7b|AU022754/Wnt7b_chr15_85581015_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Wnt7b|AU022754/Wnt7b_chr15_85581015_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Adamts14_chr10_61261833_F | TCGTCGGCAGCGTCACTCCCCTATGCCACTCCAT | 60.0 | 0.08 |
| mm4_intron_Adamts14_chr10_61261833_R | GTCTCGTGGGCTCGGCACTTCCTGTCTCCTCGTCC | 59.4 | 0.08 |
| mm4_intergenic_Pgm2|Gm12702_chr4_99992035_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Pgm2|Gm12702_chr4_99992035_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Triobp_chr15_78988644_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Triobp_chr15_78988644_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Skiv2l/mmu-mir-6970_chr17_34845137_F | TCGTCGGCAGCGTCGCCTCCACTGCAGCATAGTA | 59.5 | 0.08 |
| mm4_exon_Skiv2l/mmu-mir-6970_chr17_34845137_R | GTCTCGTGGGCTCGGCTCTTCCTGCTGCTGGACTC | 60.1 | 0.08 |
| mm4_intron_Msi2_chr11_88532488_F | TCGTCGGCAGCGTCCATAGACCTCGCACGTCTCC | 59.9 | 0.08 |
| mm4_intron_Msi2_chr11_88532488_R | GTCTCGTGGGCTCGGAACAGCTCTGGCCTTGTCTC | 59.9 | 0.08 |
| mm4_exon_Nr5a1_chr2_38692773_F | TCGTCGGCAGCGTCAGGGCACTTCTTGTCTTGGG | 59.8 | 0.08 |
| mm4_exon_Nr5a1_chr2_38692773_R | GTCTCGTGGGCTCGGTTATGCTAGGCCCACCCAAC | 59.7 | 0.08 |
| mm4_intron_C130046K22Rik_chr11_103711861_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_C130046K22Rik_chr11_103711861_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm12315|Gp1ba_chr11_70632218_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm12315|Gp1ba_chr11_70632218_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm15729|Nrros_chr16_32117131_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm15729|Nrros_chr16_32117131_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm22704|Gm14234_chr2_168399482_F | TCGTCGGCAGCGTCTGAATGTCGAGAGCCATGGG | 59.8 | 0.07 |
| mm4_intergenic_Gm22704|Gm14234_chr2_168399482_R | GTCTCGTGGGCTCGGCCACAACTCTGCTCCCTGTT | 59.8 | 0.07 |
| mm4_intron_Ngf_chr3_102488717_F | TCGTCGGCAGCGTCTGCGAGGCTCACATTGTTCT | 59.9 | 0.07 |
| mm4_intron_Ngf_chr3_102488717_R | GTCTCGTGGGCTCGGTGTGCTCAGGGACAAAGTGG | 60.1 | 0.07 |
| mm4_intron_Fmn2_chr1_174568909_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Fmn2_chr1_174568909_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Tead3_chr17_28336241_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Tead3_chr17_28336241_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_n-R5s42|Fam19a5_chr15_87598823_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_n-R5s42|Fam19a5_chr15_87598823_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Gm23702|Kirrel3_chr9_34977897_F | TCGTCGGCAGCGTCCACATGAGCAAGGGCAGTG | 59.1 | 0.06 |
| mm3_intergenic_Gm23702|Kirrel3_chr9_34977897_R | GTCTCGTGGGCTCGGGTTTGAGGGGAGATGGCTGT | 59.6 | 0.06 |
| mm4_intergenic_RP23-387F1.3|E030018B13Rik_chr7_63902032_F | TCGTCGGCAGCGTCATCCAGAGGAAACCAGTGCC | 59.6 | 0.06 |
| mm4_intergenic_RP23-387F1.3|E030018B13Rik_chr7_63902032_R | GTCTCGTGGGCTCGGGCCAACTGCTACAACCCAGT | 60.5 | 0.06 |
| mm4_intergenic_Osmr|Lifr_chr15_6919705_F | TCGTCGGCAGCGTCTTAGAGAGACACGTGGCTGC | 59.7 | 0.06 |
| mm4_intergenic_Osmr|Lifr_chr15_6919705_R | GTCTCGTGGGCTCGGTGGGACCGTGAGAAACAGAG | 59.3 | 0.06 |
| mm4_exon_Sdk2_chr11_114066590_F | TCGTCGGCAGCGTCCACCTCCGGCTAGCAAACTT | 60.3 | 0.06 |
| mm4_exon_Sdk2_chr11_114066590_R | GTCTCGTGGGCTCGGGAACCGGGCATCCATCCC | 60.2 | 0.06 |
| mm4_intron_Lrrc7_chr3_158328323_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Lrrc7_chr3_158328323_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Kntc1_chr5_123753019_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Kntc1_chr5_123753019_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Epha3|Csnka2ip_chr16_64164363_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Epha3|Csnka2ip_chr16_64164363_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Cox5a_chr9_57521386_F | TCGTCGGCAGCGTCCTGCCCTCCGTCGCTGTA | 61.4 | 0.06 |
| mm4_exon_Cox5a_chr9_57521386_R | GTCTCGTGGGCTCGGCCAGGTCACAGCAAGGACAC | 60.8 | 0.06 |
| mm4_intergenic_Gm10800|Gm13809_chr2_98925531_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm10800|Gm13809_chr2_98925531_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_exon_4732444A12Rik/Notum_chr11_120660396_F | TCGTCGGCAGCGTCCCTCCCATGGCAATGTCACT | 60.0 | 0.06 |
| mm3_exon_4732444A12Rik/Notum_chr11_120660396_R | GTCTCGTGGGCTCGGCGAGGAGCAGCAGTGTCTT | 59.7 | 0.06 |
| mm4_intron_Acvr1_chr2_58521823_F | TCGTCGGCAGCGTCGCTCCAGACTTGCACCAGAG | 60.6 | 0.06 |
| mm4_intron_Acvr1_chr2_58521823_R | GTCTCGTGGGCTCGGGTGGCTACTCTGCAGGGAAG | 60.1 | 0.06 |
| mm4_intron_Nup107_chr10_117790734_F | TCGTCGGCAGCGTCCTGAGTCCTGCTTACTCCCC | 59.1 | 0.05 |
| mm4_intron_Nup107_chr10_117790734_R | GTCTCGTGGGCTCGGAGATAACTCCGCGGAGAACA | 58.5 | 0.05 |
| mm4_exon_Cul4a_chr8_13106130_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Cul4a_chr8_13106130_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Ppp2r1b_chr9_50880660_F | TCGTCGGCAGCGTCAGTAAGTGTAGGAACCAGTGGC | 59.6 | 0.05 |
| mm4_exon_Ppp2r1b_chr9_50880660_R | GTCTCGTGGGCTCGGTACTGCACGGTATCGCAACA | 59.7 | 0.05 |
| mm4_intergenic_Gm16104|Nfic_chr10_81419690_F | TCGTCGGCAGCGTCGCCTCCCATAGTAACCCAGC | 59.8 | 0.05 |
| mm4_intergenic_Gm16104|Nfic_chr10_81419690_R | GTCTCGTGGGCTCGGGGGTGAGACCATGGTCAAGG | 60.0 | 0.05 |
| mm4_intron_Arhgap24_chr5_102759323_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Arhgap24_chr5_102759323_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm15778|Ipo8_chr6_148740946_F | TCGTCGGCAGCGTCGCGTGGCATTATGGGTCTTC | 59.3 | 0.05 |
| mm4_intergenic_Gm15778|Ipo8_chr6_148740946_R | GTCTCGTGGGCTCGGTGTGTCCTGGAAGCTCCTTT | 58.8 | 0.05 |
| mm4_exon_Rxrb_chr17_34037571_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Rxrb_chr17_34037571_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Uhrf2_chr19_30030500_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Uhrf2_chr19_30030500_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Glp1r_chr17_30901857_F | TCGTCGGCAGCGTCGCAGGTGGCAGCTATGACC | 60.8 | 0.05 |
| mm4_exon_Glp1r_chr17_30901857_R | GTCTCGTGGGCTCGGAGGAGGCTTGGGGTGCTG | 61.6 | 0.05 |
| mm4_intron_Sned1_chr1_93243537_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Sned1_chr1_93243537_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Sept1|Zfp553_chr7_127232995_F | TCGTCGGCAGCGTCTAGAACTTGGCAGGCTCCAG | 59.3 | 0.04 |
| mm4_intergenic_Sept1|Zfp553_chr7_127232995_R | GTCTCGTGGGCTCGGATGGAGTGGCAGACAAAGGG | 59.9 | 0.04 |
| mm4_intron_Wfdc3_chr2_164738304_F | TCGTCGGCAGCGTCCCCCTGCAAGCTACCAATGA | 60.0 | 0.04 |
| mm4_intron_Wfdc3_chr2_164738304_R | GTCTCGTGGGCTCGGTGGCTTAGCTTTCTTGGACAGA | 59.6 | 0.04 |
| mm4_exon_Zer1_chr2_30105994_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Zer1_chr2_30105994_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Hfe2_chr3_96527307_F | TCGTCGGCAGCGTCGGACCTGATGATCCAGCACA | 59.4 | 0.04 |
| mm4_exon_Hfe2_chr3_96527307_R | GTCTCGTGGGCTCGGAAACCGGGCCTCATAGTCAC | 59.7 | 0.04 |
| mm4_intron_3110040N11Rik_chr7_81782788_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_3110040N11Rik_chr7_81782788_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Nemf_chr12_69356915_F | TCGTCGGCAGCGTCAAGACCTCTCGGAATCAGCG | 59.5 | 0.04 |
| mm4_intron_Nemf_chr12_69356915_R | GTCTCGTGGGCTCGGGGTGCCTCGGGGATTCTC | 59.4 | 0.04 |
| mm4_intron_Ptpn13_chr5_103580201_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ptpn13_chr5_103580201_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intron_Unc5a_chr13_54983694_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intron_Unc5a_chr13_54983694_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Gm11186_chr11_53119661_F | TCGTCGGCAGCGTCTCTCATCCCCACCCTCCATT | 59.9 | 0.04 |
| mm4_intron_Gm11186_chr11_53119661_R | GTCTCGTGGGCTCGGTCAGGCTAGCCTCAACCTCT | 59.9 | 0.04 |
| mm4_intron_Nrf1_chr6_30073566_F | TCGTCGGCAGCGTCAAAGCCATGGAGAGTGCACA | 59.8 | 0.03 |
| mm4_intron_Nrf1_chr6_30073566_R | GTCTCGTGGGCTCGGTGAGCAAAAGAGAAGGGTTGT | 57.7 | 0.03 |
| mm4_intergenic_4930569F06Rik|Suds3_chr5_117064730_F | TCGTCGGCAGCGTCCAGCAGAGACTAACAATTCCCC | 58.7 | 0.03 |
| mm4_intergenic_4930569F06Rik|Suds3_chr5_117064730_R | GTCTCGTGGGCTCGGTGGCACGCCTTTCTCTTTGA | 60.1 | 0.03 |
| mm4_intergenic_Fxyd4|Gm4875_chr6_117990811_F | TCGTCGGCAGCGTCCGCTTGTTTCCTTGGGTGTG | 59.9 | 0.03 |
| mm4_intergenic_Fxyd4|Gm4875_chr6_117990811_R | GTCTCGTGGGCTCGGGATGTTCCCCACTGTTGCCT | 60.2 | 0.03 |
| mm4_intergenic_Gm22106|Ptp4a3_chr15_73746696_F | TCGTCGGCAGCGTCCCCCTCCCTTTAAGGATGCC | 59.8 | 0.03 |
| mm4_intergenic_Gm22106|Ptp4a3_chr15_73746696_R | GTCTCGTGGGCTCGGGGTGCAACCCCTCACAAAAC | 59.8 | 0.03 |
| mm4_exon_Osbpl3_chr6_50328773_F | TCGTCGGCAGCGTCAGCAGAACTTCCTGGGCATC | 60.0 | 0.03 |
| mm4_exon_Osbpl3_chr6_50328773_R | GTCTCGTGGGCTCGGCTGCCCTGCCACTAGGAAAA | 59.9 | 0.03 |
| mm4_exon_A230009B12Rik_chr17_10473344_F | TCGTCGGCAGCGTCACACCAATGACCTCAGCGAG | 60.0 | 0.03 |
| mm4_exon_A230009B12Rik_chr17_10473344_R | GTCTCGTGGGCTCGGCGAAGTCTCCTCTGGCATCC | 59.8 | 0.03 |
| mm4_intron_Ddr2_chr1_170065685_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ddr2_chr1_170065685_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm12943|Dlgap3_chr4_127168449_F | TCGTCGGCAGCGTCCTTCGGACAGTCCCCTTTCC | 60.0 | 0.03 |
| mm4_intergenic_Gm12943|Dlgap3_chr4_127168449_R | GTCTCGTGGGCTCGGCCGCTATACCTGCCGTCTTA | 59.0 | 0.03 |
| mm4_intergenic_C2cd2l|Dpagt1_chr9_44322938_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_C2cd2l|Dpagt1_chr9_44322938_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Trappc9_chr15_72984514_F | TCGTCGGCAGCGTCCTATAGCAGCAACGGTGGCT | 60.1 | 0.02 |
| mm4_intron_Trappc9_chr15_72984514_R | GTCTCGTGGGCTCGGGAAGTCAGGAGTTGGGGTGG | 59.9 | 0.02 |
| mm4_exon_CT573030.1_chr17_34770615_F | TCGTCGGCAGCGTCTCTTTCTTGGCCTCCACTGC | 60.2 | 0.02 |
| mm4_exon_CT573030.1_chr17_34770615_R | GTCTCGTGGGCTCGGCTTCCTGCTGCTGGACTCTC | 60.1 | 0.02 |
| mm4_intergenic_Rybp|Gm23234_chr6_100422160_F | TCGTCGGCAGCGTCCAGGAGGCAGAGACTTCCAG | 59.4 | 0.02 |
| mm4_intergenic_Rybp|Gm23234_chr6_100422160_R | GTCTCGTGGGCTCGGCAGAGGTAGGGCCCTTGTCT | 60.6 | 0.02 |
| mm4_intron_1300002K09Rik_chr4_45867494_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_1300002K09Rik_chr4_45867494_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gabbr2_chr4_46675502_F | TCGTCGGCAGCGTCCTTCTGAGGTCGGGGCAAAG | 60.6 | 0.02 |
| mm4_intron_Gabbr2_chr4_46675502_R | GTCTCGTGGGCTCGGTGAGCCTTAATCGACGTTCCA | 59.4 | 0.02 |
| mm4_intergenic_Plin2|Dennd4c_chr4_86724382_F | TCGTCGGCAGCGTCGCATGCTTGCCTAGTTGC | 57.2 | 0.02 |
| mm4_intergenic_Plin2|Dennd4c_chr4_86724382_R | GTCTCGTGGGCTCGGGTCTCACACTGTAGCCCAGG | 59.7 | 0.02 |
| mm4_exon_Lpcat4_chr2_112242306_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Lpcat4_chr2_112242306_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Anpep_chr7_79827239_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Anpep_chr7_79827239_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Sh3pxd2b_chr11_32357998_F | TCGTCGGCAGCGTCTGCGGAAGTGCATCTGTGAT | 60.0 | 0.02 |
| mm4_intron_Sh3pxd2b_chr11_32357998_R | GTCTCGTGGGCTCGGCCCTCACTGATAGCACTGGC | 60.1 | 0.02 |
| mm4_intergenic_Gm26228|Gdf10_chr14_33657511_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm26228|Gdf10_chr14_33657511_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Ric8_chr7_140861359_F | TCGTCGGCAGCGTCTACACAGGCTACGGGAATGC | 59.8 | 0.02 |
| mm4_exon_Ric8_chr7_140861359_R | GTCTCGTGGGCTCGGACATACCTGGCCTTGGCTTC | 60.0 | 0.02 |
| mm4_exon_Mmgt2_chr11_62648885_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Mmgt2_chr11_62648885_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Skint3_chr4_112267231_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Skint3_chr4_112267231_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm11493|Akap1_chr11_88821292_F | TCGTCGGCAGCGTCGCACGAGAACAGAGAGGAGG | 59.8 | 0.02 |
| mm4_intergenic_Gm11493|Akap1_chr11_88821292_R | GTCTCGTGGGCTCGGTTGGTGTCCCCATGAGAACG | 59.9 | 0.02 |
| mm4_intergenic_Gm23067|Gm26072_chr5_70193689_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23067|Gm26072_chr5_70193689_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Ltbp1_chr17_75006096_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Ltbp1_chr17_75006096_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm9905/Mettl9|SNORA7_chr7_121035490_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm9905/Mettl9|SNORA7_chr7_121035490_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_Ankrd63_chr2_118702825_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_Ankrd63_chr2_118702825_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tecpr1|2900089D17Rik_chr5_144230133_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tecpr1|2900089D17Rik_chr5_144230133_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Gm26907_chr9_81852412_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Gm26907_chr9_81852412_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Fbxw4_chr19_45659697_F | TCGTCGGCAGCGTCTTCAGTATTCCGGGTGCCAC | 60.0 | 0.01 |
| mm4_intron_Fbxw4_chr19_45659697_R | GTCTCGTGGGCTCGGCTCGGCACCGACCTGTAA | 59.0 | 0.01 |
| mm4_intron_Ak7_chr12_105737528_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ak7_chr12_105737528_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Npas3_chr12_54004006_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Npas3_chr12_54004006_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trpc5_chrX_144391907_F | TCGTCGGCAGCGTCAGGACCATGATAGTTTGTGATTGA | 57.9 | 0.01 |
| mm4_intron_Trpc5_chrX_144391907_R | GTCTCGTGGGCTCGGAACGCAGGACCTGTAGAAGC | 60.0 | 0.01 |
| mm4_exon_Dmrta2_chr4_109981952_F | TCGTCGGCAGCGTCGGTTCGGAGGCTGACAAAGA | 59.9 | 0.01 |
| mm4_exon_Dmrta2_chr4_109981952_R | GTCTCGTGGGCTCGGAAGATGTCCAGCGGCGTC | 60.1 | 0.01 |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45872110_F | TCGTCGGCAGCGTCAGGAGGCCTCTGTAGTCAGG | 60.0 | 0.01 |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45872110_R | GTCTCGTGGGCTCGGACCCCGTCTCCTCAACAAAC | 59.8 | 0.01 |
| mm4_intergenic_9030622O22Rik|Foxa2_chr2_148040887_F | TCGTCGGCAGCGTCACATAGCAGGTTAGGGCAGC | 59.8 | 0.01 |
| mm4_intergenic_9030622O22Rik|Foxa2_chr2_148040887_R | GTCTCGTGGGCTCGGAGCCCAGCCTGAAATGTGTT | 60.1 | 0.01 |
| mm4_intergenic_Gm16391|Gm17538_chr17_76962079_F | TCGTCGGCAGCGTCACCACTGGCATTCAAATGACTC | 59.1 | 0.01 |
| mm4_intergenic_Gm16391|Gm17538_chr17_76962079_R | GTCTCGTGGGCTCGGTGTCCCTTGTTGCAAAATGACA | 59.2 | 0.01 |
| mm4_intergenic_Gm23041|Nav3_chr10_109454514_F | TCGTCGGCAGCGTCGGATTCCATGCTAGGTCGCA | 59.8 | 0.01 |
| mm4_intergenic_Gm23041|Nav3_chr10_109454514_R | GTCTCGTGGGCTCGGAGGCATCCATTCAAAGAGCA | 57.4 | 0.01 |
| mm4_exon_Sspo_chr6_48466331_F | TCGTCGGCAGCGTCATCCACATGACCACTCCTGC | 59.7 | 0.01 |
| mm4_exon_Sspo_chr6_48466331_R | GTCTCGTGGGCTCGGCGTGGGAGGCAGAACATAGG | 60.1 | 0.01 |
| mm4_exon_Tesk1_chr4_43443415_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Tesk1_chr4_43443415_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Mir1931|Cdk17_chr10_93190541_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Mir1931|Cdk17_chr10_93190541_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Rerg_chr6_137153290_F | TCGTCGGCAGCGTCCACTGTTGAGTCACGTGCAC | 59.6 | 0.01 |
| mm4_intron_Rerg_chr6_137153290_R | GTCTCGTGGGCTCGGTGTGCTGCTCCCTCAATGTT | 59.8 | 0.01 |
| mm4_intergenic_Gm8609|Gm22543_chr16_40006867_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm8609|Gm22543_chr16_40006867_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Numbl/Adck4_chr7_27258727_F | TCGTCGGCAGCGTCGGAGGGCGGGGTTATCTTTT | 59.7 | 0.00 |
| mm4_exon_Numbl/Adck4_chr7_27258727_R | GTCTCGTGGGCTCGGCGGGAGGATTCCGTTCCG | 59.8 | 0.00 |
| mm4_intron_Rere_chr4_150609618_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rere_chr4_150609618_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm14822|Magee2_chrX_104774620_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm14822|Magee2_chrX_104774620_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Tmco6_chr18_36735369_F | TCGTCGGCAGCGTCATGTGGCGGTTGGGAATAGG | 60.1 | 0.00 |
| mm4_exon_Tmco6_chr18_36735369_R | GTCTCGTGGGCTCGGTGCTGACTAACTGCTGCTCC | 60.0 | 0.00 |
| mm4_intergenic_Mcm5|Rasd2_chr8_75147930_F | TCGTCGGCAGCGTCCGTAGGGCTTGGAGACAGAC | 59.8 | 0.00 |
| mm4_intergenic_Mcm5|Rasd2_chr8_75147930_R | GTCTCGTGGGCTCGGCCCTTCTGCATGCTTCTCCA | 60.0 | 0.00 |
| mm4_intergenic_Rnd1|Ccdc65_chr15_98701761_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rnd1|Ccdc65_chr15_98701761_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8325|P2ry1_chr3_61002646_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8325|P2ry1_chr3_61002646_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26469|Gm14258_chr2_169063657_F | TCGTCGGCAGCGTCGAGGCCACAGATGTTGCTCT | 60.0 | 0.00 |
| mm4_intergenic_Gm26469|Gm14258_chr2_169063657_R | GTCTCGTGGGCTCGGTGTGTTCCTCTGAGCGTGAC | 59.9 | 0.00 |
| mm4_intron_Zfat_chr15_68258383_F | TCGTCGGCAGCGTCACTCGAACACCTATGCAGCC | 60.1 | 0.00 |
| mm4_intron_Zfat_chr15_68258383_R | GTCTCGTGGGCTCGGAAAAGGGAGGCGGTGGAGAG | 61.8 | 0.00 |
| mm4_intron_Ushbp1_chr8_71391126_F | TCGTCGGCAGCGTCACCTGACATCAAAGCCCCAG | 59.9 | 0.00 |
| mm4_intron_Ushbp1_chr8_71391126_R | GTCTCGTGGGCTCGGCAACACTCCCCAAAGCAAAGA | 58.9 | 0.00 |
| mm4_intron_Tnrc6c_chr11_117724063_F | TCGTCGGCAGCGTCTCGTAGACACCACCCAGTCA | 60.1 | 0.00 |
| mm4_intron_Tnrc6c_chr11_117724063_R | GTCTCGTGGGCTCGGGTGTCCCAGGCTTCTTTCCT | 59.5 | 0.00 |
| mm4_intron_Pdik1l_chr4_134287415_F | TCGTCGGCAGCGTCCTCTGGCCATTGCGCTCC | 61.2 | 0.00 |
| mm4_intron_Pdik1l_chr4_134287415_R | GTCTCGTGGGCTCGGATTGGTCCGCTCTGCAGC | 60.4 | 0.00 |
| mm4_intron_Pcif1_chr2_164879798_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Pcif1_chr2_164879798_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nox4_chr7_87246622_F | TCGTCGGCAGCGTCCACAACAACAGGCTCGCG | 59.7 | 0.00 |
| mm4_intron_Nox4_chr7_87246622_R | GTCTCGTGGGCTCGGGCTGTACTGAGTCTGGAGGC | 59.8 | 0.00 |
| mm4_intron_Golga1_chr2_39065333_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Golga1_chr2_39065333_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm14216_chr2_154731634_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm14216_chr2_154731634_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Emid1_chr11_5109678_F | TCGTCGGCAGCGTCAAGCTAGGAGCCTGATGGGA | 60.0 | 0.00 |
| mm4_intron_Emid1_chr11_5109678_R | GTCTCGTGGGCTCGGGCCTGATTGACACTGGTCCA | 59.9 | 0.00 |
| mm4_intron_E2f1_chr2_154568457_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_E2f1_chr2_154568457_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Crocc_chr4_141017352_F | TCGTCGGCAGCGTCGCACCTCTGCCTAGCATCAT | 59.8 | 0.00 |
| mm4_intron_Crocc_chr4_141017352_R | GTCTCGTGGGCTCGGCCTTAGGCCAGAGTCCTCCT | 60.0 | 0.00 |
| mm4_intron_Cdh22_chr2_165234344_F | TCGTCGGCAGCGTCGAGCTCAGGACACAGGGAC | 59.4 | 0.00 |
| mm4_intron_Cdh22_chr2_165234344_R | GTCTCGTGGGCTCGGGGACTTTCCCACGTCCAAAC | 59.0 | 0.00 |
| mm4_intron_Camkk2_chr5_122769337_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Camkk2_chr5_122769337_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ap3b1_chr13_94540433_F | TCGTCGGCAGCGTCCCATTCTAAATGCTCCCTGACC | 58.7 | 0.00 |
| mm4_intron_Ap3b1_chr13_94540433_R | GTCTCGTGGGCTCGGAAATGTCATTATGCCCGCCA | 58.2 | 0.00 |
| mm4_intergenic_Swap70|Sbf2_chr7_110288811_F | TCGTCGGCAGCGTCTGGGTCCAATGCTCTGTGTC | 59.9 | 0.00 |
| mm4_intergenic_Swap70|Sbf2_chr7_110288811_R | GTCTCGTGGGCTCGGCTCCAAGTCCACAGAGGCTG | 60.0 | 0.00 |
| mm4_intergenic_Serinc2|Gm10570/Fabp3_chr4_130306905_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Serinc2|Gm10570/Fabp3_chr4_130306905_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pianp|Zfp384_chr6_125004536_F | TCGTCGGCAGCGTCCGTGGAAGGTGAAGAAGCCT | 59.9 | 0.00 |
| mm4_intergenic_Pianp|Zfp384_chr6_125004536_R | GTCTCGTGGGCTCGGACGAGAGCATCTTGCCCTTC | 60.1 | 0.00 |
| mm4_intergenic_Nfia|Nfia/E130114P18Rik_chr4_97774622_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nfia|Nfia/E130114P18Rik_chr4_97774622_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mapk4|Mapk4/Gm9925_chr18_74064990_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mapk4|Mapk4/Gm9925_chr18_74064990_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Lmod3|Frmd4b_chr6_97254366_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Lmod3|Frmd4b_chr6_97254366_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25651|4933400A11Rik_chrX_169766595_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25651|4933400A11Rik_chrX_169766595_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24720|Tshz1_chr18_83371100_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24720|Tshz1_chr18_83371100_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24382|Mbnl1_chr3_60501057_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24382|Mbnl1_chr3_60501057_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23856|Mst1r_chr9_107906821_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23856|Mst1r_chr9_107906821_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12210|Gm11187_chr11_52545542_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12210|Gm11187_chr11_52545542_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10782|Slc25a48_chr13_56412746_F | TCGTCGGCAGCGTCGACGGGCTTGAGTGGTTACA | 59.9 | 0.00 |
| mm4_intergenic_Gm10782|Slc25a48_chr13_56412746_R | GTCTCGTGGGCTCGGAGCACTCAGGGAGGAGAGAG | 60.0 | 0.00 |
| mm4_exon_Tjp3_chr10_81281248_F | TCGTCGGCAGCGTCCCAGACCGTTGGCTTCAGAT | 60.0 | 0.00 |
| mm4_exon_Tjp3_chr10_81281248_R | GTCTCGTGGGCTCGGCAGGTCGATCATGGGGTGAG | 59.8 | 0.00 |
| mm4_exon_Sdk1_chr5_141241963_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Sdk1_chr5_141241963_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Nfe2_chr15_103255299_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Nfe2_chr15_103255299_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Ncam1_chr9_49509738_F | TCGTCGGCAGCGTCTGCCCTCCTCCATGTCTTTG | 59.6 | 0.00 |
| mm4_exon_Ncam1_chr9_49509738_R | GTCTCGTGGGCTCGGTGGTCATGGACATCACCTGC | 60.0 | 0.00 |
| mm4_exon_Mroh7_chr4_106727950_F | TCGTCGGCAGCGTCAGGCTGACCCTACCCTTGAT | 59.9 | 0.00 |
| mm4_exon_Mroh7_chr4_106727950_R | GTCTCGTGGGCTCGGGGGACTTCCGGATCATGGTG | 60.1 | 0.00 |
| mm4_exon_Faxc_chr4_21931726_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Faxc_chr4_21931726_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Cat_chr2_103467090_F | TCGTCGGCAGCGTCGCCTGCCTCAGAACAAGTCT | 59.9 | 0.00 |
| mm4_exon_Cat_chr2_103467090_R | GTCTCGTGGGCTCGGCAGATGGCTTTTGACCCAAGC | 60.0 | 0.00 |
| mm4_exon_2810428I15Rik_chr8_70504372_F | TCGTCGGCAGCGTCTGATGGGAAAGCTGCAGAGG | 60.0 | 0.00 |
| mm4_exon_2810428I15Rik_chr8_70504372_R | GTCTCGTGGGCTCGGCAGAGGAAGCCGGGAAAAGA | 59.6 | 0.00 |
| mm3_intergenic_4933434M16Rik|2610035D17Rik_chr11_112843190_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_4933434M16Rik|2610035D17Rik_chr11_112843190_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_intron_Vstm2l_chr2_157921742 |
GAGTGTGTAGGCAGTCCCTGGTCCTGAACCTGACAGTGCCCTGGCTCGGTGCCCTGGCTTGTGAATCTGTCATGGGGGAG GGAATGCCAGGGTACTGGGGGTGCTGTGTTCTGCCTGAAAGAACCCACAGG |
| mm4_intergenic_Agap1|Gm25180_chr1_89462071 |
TGCAGGTCAGTGTTAGCCACAGCTGGCCCTGCCTCCCTGGAGTTGAGACCCTCCTGCTCCTGTGCCAGCTGTCCTTGGCT CAGCGTCCAGCCTGGAGAGCTTAGATCTCCCAAGGGCAGATCTCAGGCCTTGCTCACA |
| mm4_intron_Itgb2l_chr16_96434098 |
TAAGTGCAAGTTCAGGGCCCCAGGGAGGATGGAGGGCTGAGAGCTGAGCCAGGGCAGAGTCAGCTTGCTGCAGCAGTGAC ATTATAAAGAGAGCCTGGGACCGA |
| mm4_intergenic_Gm23926|Gm25115_chr14_86395723 |
CAGCTGGCGATCAGTCTTCTACAGCCCTGGCTCGGCTCCCCAGCCTGGACCGCTCCCAACTGCAGGGTCTGAAATGCCTC T |
| mm4_exon_Srrm3_chr5_135857187 |
CAGAACGGAGGCAGCAGGCAGCGAAGCGGAGCGCACGGGGGTCGCCCCGGCTCGGCGCACAGCCCGCCCGATGTACGTAA GCTTGGCTTTGTGGAGGGTTTGT |
| mm4_intron_Gpr133_chr5_129174821 |
TCAGAAGGAGATGGAGTGGGTACCATTCAGTCTGAGAACCCAGGCTCAGCGCCCTGCCTTGAGTTCCTAACTCCAAGTAC TCAGCTGATGGTTCTGCT |
| mm4_intron_Vps13d_chr4_145193535 |
ACACAATGTGAAGCTGACTACCTTGTTTTATTATGTGAGCCTCAAACAGTCCTGGGCACCAAGCCAAGGCTAAAGTAATC TTTATTTTTGTTATTGCCATTAATTTCAGCCCTAAAAGCCAACTCTCC |
| mm4_intron_Cecr5_chr6_120521901 |
CTCGGACCTCAGCATTGTGTTTTCACTTCTACGTAAAAACTGAACTTCCCTCACCTCTGCAGTGCTGGGCACTGAACCAT GGCCTTGCAATCGAGAAGGACTGGCT |
| mm3_intron_Ccz1_chr5_143998511 |
GAGAGCTCCCTTTCGGATCGTTGCTCAACAGGGCGACCCAGTGCCATCTTTATCTTTACAGAAGAGTGGCGAGGCCCAGC GCTGTGAGCCGAGCCACGGGCATCCTACCTTCCATAGTGCTGAAGATTCCCAGGC |
| mm4_intergenic_Gm12158|Ebf1_chr11_44823988 |
TCGTGGCAGAATTTCATAAGTGAGATATTTCAAAATATTTTAAGGCTTGGGACCGTGGCTCGGTGCACAGCACTTGCCTA GAGTGTGTGAGACTTTG |
| mm4_intron_Cdh13_chr8_119288482 |
GCATGATCAGAGAGCAGCCTAACAACTGAGCAACTGGAATGGAAAGGTTCGAGGGTTAAGCATGGCCTGGCGCTGAGCCA CGGAGTCAGGGTTCTATGCTCGGTACACGGC |
| mm4_intergenic_Gm24365|Bag3_chr7_128514351 |
GCCCAGCCCTAACTAGGAGAACAGAGAGGAAGGGAAAACACAAGGGATGCTGTGGCCCAGGGAGACATCCTTGGCTCTGC TCTCTGCCCTGCCCTGCCTGACACCAGGGCCTCAGCTTTGCCCCACGGCTGTATAACACA |
| mm4_intron_Megf11_chr9_64485140 |
CAGCTGACTGGACTTGGAGGGGGAGATTGGATTCTGGCTGCTCTGCCTCTGGCCTGATTCTTCTGATCCCTGGCTGGGTG CTCAGCTCTGGTCCTCCTTGGAGGCCATGAAACAACCTTGTCAGCAGATTCTGTCCCCG |
| mm4_intergenic_Bicc1|Tfam_chr10_71224828 |
CCCACAGGAGGTAGTCAGGATTTGAACGCGCCCAGTCCAATTCTTAACCATTCCAAGATTTTCGGCTCTGCCAACCTTTG GCAGAACTGGGGGCTGAGCCAAGGGCTTCAAGGATGTTACGCAGGCTCCTTATCCTAGC |
| mm4_intron_Tbx4_chr11_85912703 |
CAACACTGACCTGGGACCAGTGTGTCCAAGGCTCAGCTGCCAGCCCTGTGTTTTCCACAGACAGATTTGGGTTTGACTCA TGTTACCTTGCCAAAGGTTCTTCGTGGGTCCTCAAGATCCT |
| mm4_exon_Dleu7/Rnaseh2b_chr14_62292782 |
GATGCTCCCGCGTCCCAGCCCCCTCCGGGTCCGCAGCTGGCCTGGGCGACGAGCCTGGGCGATGGGCACGTGGTCCGGGC CGCGCGGGCTCCCTGGGGCGCTAGGACCGTCGCCCCAGCCCCACTCCTGCTGTAGTA |
| mm4_intergenic_Cbx6/Nptxr/Npcd|Apobec3_chr15_79848179 |
TCCGCCGATCATTCCATACCCGGCCCTGGTTCAGGGCCCAGCACTGGACTGTGGAGGCTGCCACTGTCACCATGCTGCAC ACTGCCAGCTCTAGCCAGCATCCCAGTG |
| mm4_exon_Tcof1_chr18_60832425 |
GGCTGAGACCTCTGAGGACTCACCTTGGCTGGGCTCCCAGGCCCGTCACTGTCCAGCTCTGCACTGCTGCTCTCCGAGAC ATCTTCTTTCTTTACCATTTGGACCCTGAGAGCTGC |
| mm4_intron_Sbf1_chr15_89313542 |
CTCACCACCATCCAAGTCCATTCCATTCCTCCAGCCCTGGCCCAGCGCCCAGCCCGAGACCCCAGCCAGCCCTCAGCCAG CTTGGTTTCCTC |
| mm4_intergenic_Zfp428|Irgq_chr7_24529675 |
GGTCATTCCTGGCAGGTAGTCACTGCGGCCACCTGTAGCAGGGCGGGGCGTCGAGATATGGAGGTCCCTTTAGTGTCTGT CACTCCTGCACCCAACCCCTCTTTCTGGCAGT |
| mm4_intergenic_Gm26674/Sash1|Gm9930_chr10_8916734 |
CGGAGGTGATCGCTTTGTTTTCTTCTGTTTTCCACATCTCATCAACAGTGCTGGGCATCGAGCAAAGGCTCAACAGGAGT TTACTTCTAACAGCATAAAGGAGTTCAAAGGCATGCTATGCTGTCTGTACGCT |
| mm4_intron_Grik4_chr9_42720790 |
GTTTGGCCTGTTCTGCACTGATTCCCCAGATCCAAAGGCAGTGCCCATCCATTAAATACAATGTTTCTCAAAGAGTGTCC GGACTACCTGCAGGGCTGGTTGCTGAGACACGGTGTTAAGTAGAGCGTAAAGATCCCGCC |
| mm4_intron_Sh3bp4_chr1_89125777 |
AGGAAGAGGGTGGTTTGTGCCAGACAAGGAAGTAAGGGCAGTGTGGCCACGCCAGGCAGACTGGCAGGCCGGGGCACCGA GCCCTGGGCTACACAAGTCGATACTACTTGTCAGTATCTGCA |
| mm4_intron_Tll2_chr19_41189268 |
TGAGGTCACAGGAACCGAGAGGTTGAAAGGGGGCAGAGAAGGAAGAGTAGACATGGTGAATGGAGATCCAGGGCTGGGAG AAAAGCCAGGGTGCAGAAGTTCTGAGGAGTCCTTCACTTTGGCACCGCATG |
| mm4_intergenic_Hbq1a|Sh3pxd2b_chr11_32307316 |
TCACAGTAACAAGGCAGGCCCAGAGGCTGTGCAACCCCGGGGCTGAGGGCTGAGCCATGGGTGGCTTCCTAGAGAATGGG ACAAAAGAAATCATTTCCCAACTACCAAGAGGAAGCAGGTGGGTGAAG |
| mm4_intron_Fmo3_chr1_162957595 | GTTGCCCACAGCTATGTCCTTCATACTTTACCATGGCTCTGATCCCAGCTCTGTTATGAGAGGATGCTGGCTGC |
| mm3_intergenic_Ttyh3|Iqce_chr5_140659731 |
AGGAAGTAGCCGAGTGGAGTGGTAGAAGCAGGAGGGTGGGGGCACACGAGGAGGAGGCGGGACTTCAGGTAGGTCAGCCC TGGCTCAGCAGCCAGCCCTGTCCGAGGGAAGCATCACATGTGCCAAGGGAGG |
| mm4_intron_Foxo3_chr10_42205329 |
TCCATTCCTTCCAGCCAAGCTTGCACTTGCGGCACACACAGATCCCTGGCAGCCTCGCACCTCTGCCCACACCCACGGCT TGCCGCCCAGCCCTCTTCCTCCCCTGCTCCCCAAGGCCTCACACTTCCCACTCCAC |
| mm4_intron_Adamts14_chr10_61261833 |
ACTCCCCTATGCCACTCCATCACCACCACAGCCCACCATGATCGGGCTGGGAGCTCTGCCTGGCCCTTTGCTTGGCCCCC AGTCCTGGCAGCGACTGGAGCTTCGGGACGAGGAGACAGGAAGTG |
| mm4_exon_Skiv2l/mmu-mir-6970_chr17_34845137 |
GCCTCCACTGCAGCATAGTACCTGAGCACAGGGTGGGTGGCGTGAGACCTCGCACAGGCCCAGTCTCTGCTCCCAGCCCT GAACTTACCCCTGGGTGTGGAAGGCCCCTCGGGAGTCCAGCAGCAGGAAGAG |
| mm4_intron_Msi2_chr11_88532488 |
CATAGACCTCGCACGTCTCCCTTCTTAGCGGCTTTAAAATAAGAAAAGAGCCAGAGCTGGGAGCCAAGGCAGGGACCTAA ACGTCTGTCTTTCTGGCAGACTCCTCGAAGGAGACAAGGCCAGAGCTGTT |
| mm4_exon_Nr5a1_chr2_38692773 |
AGGGCACTTCTTGTCTTGGGGCTGTGGGTCTCTGGCCTTGGTGGGAGCACGCATTTCAGGGGCAGAGGTGGGGGCTGAGC CAGGGTAGTAGAAGACAGGAGACAGCCTTGTCCAGTTGGGTGGGCCTAGCATAA |
| mm4_intergenic_Gm22704|Gm14234_chr2_168399482 |
TGAATGTCGAGAGCCATGGGGGATCATTGGGTCCGGAAGGAGGGGCCAGATGGCCGCAGGGCTGGGCTCTGAGCATTGGG CTCCCGCTGCCCCTCAAAGACCAAACAGGGAGCAGAGTTGTGG |
| mm4_intron_Ngf_chr3_102488717 |
TGCGAGGCTCACATTGTTCTTCCTTAATATAACATGGGTTTCTGAGGCACAATAGTCAGGGCTGGGAGCCCAGCTGAGGA CACAGGACAGGAGATGGCGAAGCTGCAGTTTGCCACTTTGTCCCTGAGCACA |
| mm3_intergenic_Gm23702|Kirrel3_chr9_34977897 |
CACATGAGCAAGGGCAGTGCGTCTGTCCGTGGCTCGCCGCACAGCCCTCTTGGTCCCCCCTCACGCTCCTCCAGCTTCAT AAGCTTCCTCTGATCTGTTTGCTTGCTGAATTAGTAAAACAGCCATCTCCCCTCAAAC |
| mm4_intergenic_RP23-387F1.3|E030018B13Rik_chr7_63902032 |
ATCCAGAGGAAACCAGTGCCCCCATCTGACCCACGGATGGGGGCTGAGCCAAGGCAGATCCAACCCTCAGCGCCCTGTCC CTTCAGGCTCTGTAAGAGAAGCTACTTCAGAACTGGGTTGTAGCAGTTGGC |
| mm4_intergenic_Osmr|Lifr_chr15_6919705 |
TTAGAGAGACACGTGGCTGCCTCATTCCTGTGAACCAATCCTTTGAATTTCTCCATTTCTGTGTGTCTCCATGTCTCGCT GCCCATCCCTGCTTAGTTGGTGTTCACTATCTGACTCTGTTTCTCACGGTCCCA |
| mm4_exon_Sdk2_chr11_114066590 |
CACCTCCGGCTAGCAAACTTTGCGGGTCCCACGGCCCGGCGCGCAGCCCCGTGCGCCCATGTCTGCGCCAGCTGCGGGCA GGGATGGATGCCCGGTTC |
| mm4_exon_Cox5a_chr9_57521386 |
CTGCCCTCCGTCGCTGTACCGCAGCCGCGGCTGCCCGAGGCCTCCTGCACCCCGCCTCGGCTCCCAGCCCCGCCGCCGGT AAGGTCCGCGCCCGCCACAGCCCTCGCTCGCGTGTCCTTGCTGTGACCTGG |
| mm3_exon_4732444A12Rik/Notum_chr11_120660396 |
CCTCCCATGGCAATGTCACTCCGGCCTGTGGCCACCTGCGGAGAGCGGACGGCCGTGAGGCGTCAGCANNNNNNNNNNNN NNNNNNNNNNNNNNNNAAGACACTGCTGCTCCTCG |
| mm4_intron_Acvr1_chr2_58521823 |
GCTCCAGACTTGCACCAGAGCCCTGGGTTGAAGCCCAGCCCTGCCAACCGTCTGTCACGTGGTCTGACCCAACAGTTCAT GCAGGCAAAGCCGGCATCGTGACTTCCCTGCAGAGTAGCCAC |
| mm4_intron_Nup107_chr10_117790734 |
CTGAGTCCTGCTTACTCCCCCAAATCCCACCCAGTGCTCGGCTACCAGCCCTGTCTTTGACTGCCTAGTATCACAATAGT ATGTTCTCCGCGGAGTTATCT |
| mm4_exon_Ppp2r1b_chr9_50880660 |
AGTAAGTGTAGGAACCAGTGGCCCCAGGCTCTGCTCCCAGCACTGTTAGTGAGCATTGTGCTGTTGCGATACCGTGCAGT A |
| mm4_intergenic_Gm16104|Nfic_chr10_81419690 |
GCCTCCCATAGTAACCCAGCCCTGGCCCTACACCCCCAAGGCCTTGCCCTAGTCCATGGCACCAGATGGTGACTATGGCC TGACCCTTGACTGTGCGCCCAACCCTGACCTTGACCATGGTCTCACCC |
| mm4_intergenic_Gm15778|Ipo8_chr6_148740946 |
GCGTGGCATTATGGGTCTTCCAGTTTACATATTTGCATATGCCCGATAGTCTGCATTCTTCCTTTCTTCCTTGGCTGTGT GCCAAGCCCTGGAAGCTGAGCTATGGGAAGAAAGAGGGATAAAGGAGCTTCCAGGACACA |
| mm4_exon_Glp1r_chr17_30901857 | GCAGGTGGCAGCTATGACCCAGTCCTGAGCGCCCAGCCATGGCCAGCACCCCAAGCCTCCT |
| mm4_intergenic_Sept1|Zfp553_chr7_127232995 |
TAGAACTTGGCAGGCTCCAGCTCGACCTGCCTGCCCCGGCCCAGCCCCCACTCCGAGCTGGGCTTTGTTTNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTCTCTGTTTCCCTTTGTCTGCCACTCCAT |
| mm4_intron_Wfdc3_chr2_164738304 |
CCCCTGCAAGCTACCAATGATTTCCAGATGTGGTCCCAGGGCTGGGCACAGAGTCCTGGAAAGACTACAGTGTTCTAGAC TCTCTTATGGTTAGTCTGTCCAAGAAAGCTAAGCCA |
| mm4_exon_Hfe2_chr3_96527307 |
GGACCTGATGATCCAGCACAACTGCTCACGCCAGGGTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNTGACCCCAGATCCCTGTGACTATGAGGCCCGGTTT |
| mm4_intron_Nemf_chr12_69356915 |
AAGACCTCTCGGAATCAGCGCCAGGGAGATGCAGCATCAGGCACGGTCCCCNNNNNNNNNNNNNNNNNNNNTGTCTCCCG GGGGCACCGGCCCCGGGCTCGGCCCCCAGGCCTAGAGAATCCCCGAGGCACC |
| mm4_intron_Gm11186_chr11_53119661 |
TCTCATCCCCACCCTCCATTCCGCTTCCCAACATCATGTCACACCCACCTTCTGTCCTGTTGTAAAGCCCCAGGGCTGGG TGTAGAGACACGGGCCTCTTCAGATTGGAAGGATTAAGAGGTTGAGGCTAGCCTGA |
| mm4_intron_Nrf1_chr6_30073566 |
AAAGCCATGGAGAGTGCACACTGAATCTCCATGAACATGAATGAGGGGACTCTCAGTCTCCCTTTGCCCGGCTCCAAGCC CTGCTAACTATAAACAACCCTTCTCTTTTGCTCA |
| mm4_intergenic_4930569F06Rik|Suds3_chr5_117064730 |
CAGCAGAGACTAACAATTCCCCCGCCCCCGTTGCTCTGCCCCCAGCCCTTCAGCCAAATAAAAGTGCCTCTTAAATATCA AGGGATCCTTCTACCTAAGACATTTGTGGCTCTTCAAAGAGAAAGGCGTGCCA |
| mm4_intergenic_Fxyd4|Gm4875_chr6_117990811 |
CGCTTGTTTCCTTGGGTGTGTGTTCAAGCAGTGGCTCAGGGCTGGGAGCTCATCCATGGCTTTTCCTTTCCTGTTTACCC AGTGAAGATGCTGCAGTTCTTCCTGCCGCTCCCTCCTAGGCAACAGTGGGGAACATC |
| mm4_intergenic_Gm22106|Ptp4a3_chr15_73746696 |
CCCCTCCCTTTAAGGATGCCTTCCCTGGGCTGGGCACATAGCCAAGGGGGTTGGGGAGAGCCTGGGGTTAAGGAGCCTGT TTTGTGAGGGGTTGCACC |
| mm4_exon_Osbpl3_chr6_50328773 |
AGCAGAACTTCCTGGGCATCGAAGAACTCAGAAAGGGAGTCGGTGATAGACAGCCTGCTCTCATTGGAGAGCTGGTGCAC CAGGGCTCGGCCCTCATCCCTGGAGTTTTCCTAGTGGCAGGGCAG |
| mm4_exon_A230009B12Rik_chr17_10473344 |
ACACCAATGACCTCAGCGAGCATGGCTGCCGTGATGGTGGTCCTATGGGGAACATTTGCCAACAACTGAGTGACTCAGGC CTGGCTGCAGAGCCAAGGTCCTCCAATAGGCATGTGGGCTGGATGCCAGAGGAGACTTCG |
| mm4_intergenic_Gm12943|Dlgap3_chr4_127168449 |
CTTCGGACAGTCCCCTTTCCCCCCTCTACCCCACCCCCGCCATGGCACAGCCCCTGGCTCGGGGCCCAGAGGTGGGCGGG CACAGTGGGCACGGGTGGGGCCCCCAGCTAAGACGGCAGGTATAGCGG |
| mm4_intron_Trappc9_chr15_72984514 |
CTATAGCAGCAACGGTGGCTTTGACTTCTCCATCAACGCTGTAGGATGAGGAGAACATTTCTTTTCCCAGGTAGTTCAGA ACCCATGGCCCGGCACTCAGCCTTGCTGGCACTAACCACCCCAACTCCTGACTTC |
| mm4_exon_CT573030.1_chr17_34770615 |
TCTTTCTTGGCCTCCACTGCAGCATAGTACCTGAGCACAGGGTGGGTGGCGTGAGACCTCGCACAGGCCCAGTCTCTGCC CCCAGCCCTGAACTTACTCCTGTGTGTGGAAGGCCCCTCGAGAGTCCAGCAGCAGGAAG |
| mm4_intergenic_Rybp|Gm23234_chr6_100422160 |
CAGGAGGCAGAGACTTCCAGGCTGCGAGTGGCTGAGCAGGGCTCCTTTCAGCCACTGTTCTTTGAAATTCTGCACAAAGC CTTTTCTTTTCAGGGCTGGGTTCCAACCCAGGGCTAGACAAGGGCCCTACCTCTG |
| mm4_intron_Gabbr2_chr4_46675502 |
CTTCTGAGGTCGGGGCAAAGCTGCTGCCTACTAAGTTTCTACATGAATGAAAAAACAAACCACTACTCTTATTTGTGCTA TGCAGTGGCAGGGCTGGGAGCCGAGGATTGGTCCAATGGAACGTCGATTAAGGCTCA |
| mm4_intergenic_Plin2|Dennd4c_chr4_86724382 |
GCATGCTTGCCTAGTTGCCCCTGGCTTGGCCCCCAGAACTGAATAAATTTGGGGTAGTGTTGAGGGTAGCCTGGGCTACA GTGTGAGAC |
| mm4_intron_Sh3pxd2b_chr11_32357998 |
TGCGGAAGTGCATCTGTGATGCAGAGGGGGACAGGGCTGGGATCAGAGCCCTGGGCATTCGGTGAGGGAGGGCCAGATGG GGATGGGTGAGCCAGTGCTATCAGTGAGGG |
| mm4_exon_Ric8_chr7_140861359 |
TACACAGGCTACGGGAATGCTGCCGGCCTCCTGGCTGCCAGGGGCCTCATGGCTGGGGGCCGACCCGAGGGCCAGTACTC AGAGGACGAGGACACGGACACAGAGGAGTACAGGGAAGCCAAGGCCAGGTATGT |
| mm4_intergenic_Gm11493|Akap1_chr11_88821292 |
GCACGAGAACAGAGAGGAGGGGCCGCTGAGGGGTCCAGAGGCAAAAGGCAAGGTCCCCCTGCTCCCGGCGGGGTATCCTT GCCTGGGCTCCCAGCCCAGAGTAGACGTTCTCATGGGGACACCAA |
| mm4_intron_Fbxw4_chr19_45659697 |
TTCAGTATTCCGGGTGCCACACGGTCCCGAGCCGACCAGGCCTCGGCGCCCCGCCCTTTCCCAGGACGCTNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAGGTCGGTGCCGAG |
| mm4_intron_Trpc5_chrX_144391907 |
AGGACCATGATAGTTTGTGATTGATGATTTATTCCCATTAATTTTTATCTTAAAATGCTTTTAGATAAGAGTTCCTGTTG CAGGGCTTGGGGCCGAGCTCAGGAAGAGGTACATGCTTAGCTTCTACAGGTCCTGCGTT |
| mm4_exon_Dmrta2_chr4_109981952 |
GGTTCGGAGGCTGACAAAGAAGAAGCCGAGGCCGCACCGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGGAC GCCGCTGGACATCTT |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45872110 |
AGGAGGCCTCTGTAGTCAGGCAGAGGACAGACAGGGCTGGGGGCCAAGAGAGGGTAGTGCCAACTGAAATGGCAACACAC TCCCTGACCCTTACTAGGTGTCCTGTTTCCTTAGTTTGTTGAGGAGACGGGGT |
| mm4_intergenic_9030622O22Rik|Foxa2_chr2_148040887 |
ACATAGCAGGTTAGGGCAGCGCTTTCAGTCTCCATTGTCCCCCCCACTCGGCCCCCAGCCCTGCCTCTCCGCTCCTTCGC CACAGGAGCCTTTTATGTGATAATGAAACACATTTCAGGCTGGGCT |
| mm4_intergenic_Gm16391|Gm17538_chr17_76962079 |
ACCACTGGCATTCAAATGACTCTCACTTGGCTTCCCTTGCTAGGCAACCAGCCCTGCTATGCATCAACATTACTTGCCAT TGTCATTTTGCAACAAGGGACA |
| mm4_intergenic_Gm23041|Nav3_chr10_109454514 |
GGATTCCATGCTAGGTCGCATCTACCCAAAGCCATGTGGCAGGAAGGAATGACATGGTTACTAAAACACAGCATCTTCAG CAGGCCCTGCCTGGGAGCCCATCCCTGCTGATTTTTTGCTCTTTGAATGGATGCCT |
| mm4_exon_Sspo_chr6_48466331 |
ATCCACATGACCACTCCTGCCCCTGCCCCTGCCTCTGCCCCCAGCCCTCAGATTGGAGCCCATCTAGTCACCTATGTTCT GCCTCCCACG |
| mm4_intron_Rerg_chr6_137153290 |
CACTGTTGAGTCACGTGCACCCTCAGCAGTGCTGGGCGCCCAGCACAGGCAGCTCTCTAATGCACAGATATGCCTGCTTA GTTTTAAGTCGAATTTTTTTTTCTCTCTAAACGGAAATTGAACATTGAGGGAGCAGCACA |
| mm4_exon_Numbl/Adck4_chr7_27258727 |
GGAGGGCGGGGTTATCTTTTGCATATACAGCAGGCGGCGGGCCAATGGGCGGGGTCGGGGCGGGGCGCCGAGGGAGGGAT GCTCCCCCGCCCCCGGAACGGAATCCTCCCG |
| mm4_exon_Tmco6_chr18_36735369 |
ATGTGGCGGTTGGGAATAGGGAAGAGGCTCCTGGCTCTGAGCCGAGTGTGTGCTCCCGAGCTTCTCATCCTTAACCGAGC CGTTCCTCTGCCCCCAGCCCTGCGGAAGGCGCGGAGGGAGCAGCAGTTAGTCAGCA |
| mm4_intergenic_Mcm5|Rasd2_chr8_75147930 |
CGTAGGGCTTGGAGACAGACCTGAGCCAGGGCAGGGGCCTCAGGGCTGGGAGGCTGGCCAAGGCCTTTTGGAGAAGCATG CAGAAGGG |
| mm4_intergenic_Gm26469|Gm14258_chr2_169063657 |
GAGGCCACAGATGTTGCTCTTGCTTGTGCACTGCAGAGGGAGCTGCCCTCCCCCCTCCCCCGGCCCCCAGCCCTGTTTGC TGTACTGAGTTTGCTGGTCACGCTCAGAGGAACACA |
| mm4_intron_Zfat_chr15_68258383 |
ACTCGAACACCTATGCAGCCAGACGCCCGCGGATGGCCGCTGGCGGGCGCCCTGGCACCGCCCACAGCCCTGGAAACTGC TCCCCAGGCGCGCAGGGCGCTCCCCTCGCTTGCTCTCCACCGCCTCCCTTTT |
| mm4_intron_Ushbp1_chr8_71391126 |
ACCTGACATCAAAGCCCCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCATCTTTGCTTTGGGGAGTGTTG |
| mm4_intron_Tnrc6c_chr11_117724063 |
TCGTAGACACCACCCAGTCAAGTACAAGCAAGCTCATTCTTCTGCCCTGTGCTGTGCATACAGTCTGGGGCTGCCCATGC CATAGTGCATGCAGCCTTTGCATGGCGCCCAGCACTGGTGAGGAAAGAAGCCTGGGACAC |
| mm4_intron_Pdik1l_chr4_134287415 |
CTCTGGCCATTGCGCTCCGTCGCTGCCCTGGCGCGGCGCACAGCCGAGCGTTTCCAGCGGTGTGCGCGCTGCAGAGCGGA CCAAT |
| mm4_intron_Nox4_chr7_87246622 |
CACAACAACAGGCTCGCGCGAGACAAAGGGGCTGGCGCAGGGCGGCGCGCGGGGCCAGGGGGCGTGGGGAGGCAAGGGAG CAGCGCGGTGGGAGCCGGGTGGAGACCTCCAGCCAGGCCTCCAGACTCAGTACAGC |
| mm4_intron_Emid1_chr11_5109678 |
AAGCTAGGAGCCTGATGGGAGATCGAGAAGAGCAGACGGTGCGAGTCTGGCCTCTAAGGGCTGGGCTGGGAGCCAAGGGG GGTGAAGGCGGCTACTCCAGGACAGGAATCTGGACCAGTGTCAATCAGGC |
| mm4_intron_Crocc_chr4_141017352 |
GCACCTCTGCCTAGCATCATTCCACAGAGCAAGACCCCTGTGTCCGCTCCCAGCCCTGCCATTACTGGGCTGTCTAGGAG TCCTGGCACTATGAGAGGAGGACTCTGGCCTAAGG |
| mm4_intron_Cdh22_chr2_165234344 |
GAGCTCAGGACACAGGGACCGCGACTCCCGGGCCGGGAGGTGGCCGGGCTGGGCTCCGCGCCGGGGAAAGTTTGGACGTG GGAAAGTCC |
| mm4_intron_Ap3b1_chr13_94540433 |
CCATTCTAAATGCTCCCTGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCGGGCATAATGACATTT |
| mm4_intergenic_Swap70|Sbf2_chr7_110288811 |
TGGGTCCAATGCTCTGTGTCTGCAGGGAGTTGTCTTGCTCCAAATATAGCCTCCATGGGTGGGCGGGGAGCCAGGGATGC TTCTCAGGCAGTGACTTCACTGGGCCCAGGGCCCAGCCTCTGTGGACTTGGAG |
| mm4_intergenic_Pianp|Zfp384_chr6_125004536 |
CGTGGAAGGTGAAGAAGCCTCTTTAACCTTTCCAGCGTTCCCCACAGGGCTGGAGGCCTTGCCATGGCGATGGGGAATGA AAGAGCACTTGGAGTAGAAGGGCAAGATGCTCTCGT |
| mm4_intergenic_Gm10782|Slc25a48_chr13_56412746 |
GACGGGCTTGAGTGGTTACATGTTGTTGAAAGTCAGTGATGGCCGGCAGGGGTGGGCACGGAGCCCAGGGAAGTGGGACC TCTCTCCTCCCTGAGTGCT |
| mm4_exon_Tjp3_chr10_81281248 |
CCAGACCGTTGGCTTCAGATCCGCCACCCGAACTCCGGCGCCCATGGCTGCCTACCCTGCCGCGGCGACCTGCCCTGGAC CGGCGAGAACGCTCACCCCATGATCGACCTG |
| mm4_exon_Ncam1_chr9_49509738 |
TGCCCTCCTCCATGTCTTTGCCCTTGGCTCCGGGCCCAGCTTTGCCACACAGGTTAACAGCGATGCACATGAGCAGGCCA CACTTGTTCAGGAAGTAGCAGGTGATGTCCATGACCA |
| mm4_exon_Mroh7_chr4_106727950 |
AGGCTGACCCTACCCTTGATACTGTCCCAAAACCACCCTTCCGCTTACCTGGGCTCCCCGCCCAGCCCAGGCCGGGCTTA TAGTCTTTGTGAGGTCACCATGATCCGGAAGTCCC |
| mm4_exon_Cat_chr2_103467090 |
GCCTGCCTCAGAACAAGTCTTCTTCCTGGCTTACCTGAAGCATTTTGTCAGGGCTGGGCTCGATGCCAGGGGGCATATTG CTTGGGTCAAAAGCCATCTG |
| mm4_exon_2810428I15Rik_chr8_70504372 |
TGATGGGAAAGCTGCAGAGGGAGAATTCTTTATTGCGTGAGGCACATTGGAGGGCAGCCCAGCAGGGCACGACCTCAGCC AGCTGGCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTG |