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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314057_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314057_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm3_intergenic_Gm24295|Mef2c_chr13_82839303_F | Primer3: not found at this Tm | N.d. | 0.58 |
| mm3_intergenic_Gm24295|Mef2c_chr13_82839303_R | Primer3: not found at this Tm | N.d. | 0.58 |
| mm3_exon_Srebf2_chr15_82203787_F | TCGTCGGCAGCGTCCGCCATCTTCCCCTCTCTTT | 59.4 | 0.40 |
| mm3_exon_Srebf2_chr15_82203787_R | GTCTCGTGGGCTCGGTCATCTGCTGGCAGTCACTG | 60.0 | 0.40 |
| mm3_intron_Tmod3_chr9_75505246_F | Primer3: not found at this Tm | N.d. | 0.38 |
| mm3_intron_Tmod3_chr9_75505246_R | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intron_Poc1a_chr9_106337867_F | TCGTCGGCAGCGTCACCAAGCCATGAAATTCTTGCA | 59.3 | 0.35 |
| mm4_intron_Poc1a_chr9_106337867_R | GTCTCGTGGGCTCGGTGTGACATCACTGCATGGCT | 59.9 | 0.35 |
| mm4_intron_Dnah5_chr15_28400777_F | TCGTCGGCAGCGTCAGGTTGTTGACTTGCCCAGG | 60.4 | 0.34 |
| mm4_intron_Dnah5_chr15_28400777_R | GTCTCGTGGGCTCGGTGCACAAGGGAGATGTGGAG | 59.6 | 0.34 |
| mm4_intergenic_Gm23539|Gm24184_chr8_31621732_F | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intergenic_Gm23539|Gm24184_chr8_31621732_R | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intergenic_Hat1|Gm23166_chr2_71449911_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Hat1|Gm23166_chr2_71449911_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intron_Iqsec3_chr6_121448667_F | TCGTCGGCAGCGTCTGACACATGCCATGGCTGAT | 60.0 | 0.32 |
| mm4_intron_Iqsec3_chr6_121448667_R | GTCTCGTGGGCTCGGGTGGAAACCTCAGCCTCCAA | 59.8 | 0.32 |
| mm3_intron_Lrrc1_chr9_77464368_F | TCGTCGGCAGCGTCACAGGTCCAAGACAAGGCAG | 59.8 | 0.31 |
| mm3_intron_Lrrc1_chr9_77464368_R | GTCTCGTGGGCTCGGGGCACAAGACCCCAGTGG | 60.2 | 0.31 |
| mm4_intergenic_Gm13982|Gm13985_chr2_117535948_F | TCGTCGGCAGCGTCGGCTGGGATGATGAGAAGCA | 59.8 | 0.30 |
| mm4_intergenic_Gm13982|Gm13985_chr2_117535948_R | GTCTCGTGGGCTCGGGTCCCTCCATCAAGATGCTGA | 59.5 | 0.30 |
| mm4_intergenic_Mc4r|Gnal_chr18_67082377_F | TCGTCGGCAGCGTCTCCAGCTGGGACACAAGTTT | 59.4 | 0.30 |
| mm4_intergenic_Mc4r|Gnal_chr18_67082377_R | GTCTCGTGGGCTCGGCTAGCAAGCTCCACTGCTGT | 60.0 | 0.30 |
| mm4_intron_Myt1l_chr12_29612535_F | TCGTCGGCAGCGTCTAGCTGAGAGTAGTGCGGGA | 59.7 | 0.30 |
| mm4_intron_Myt1l_chr12_29612535_R | GTCTCGTGGGCTCGGAGTTCTGCCTTATCTTTTCTTGCT | 58.6 | 0.30 |
| mm4_intergenic_Gm5132|Dynlt3_chrX_9632444_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Gm5132|Dynlt3_chrX_9632444_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intergenic_Gm15663|Mettl25_chr10_105747935_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intergenic_Gm15663|Mettl25_chr10_105747935_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_Bre_chr5_31918678_F | TCGTCGGCAGCGTCGCTACCGCCCCTACACAATT | 60.1 | 0.27 |
| mm4_intron_Bre_chr5_31918678_R | GTCTCGTGGGCTCGGCAGACAGACAGGCACCTCTG | 60.0 | 0.27 |
| mm4_intergenic_Med27|Rapgef1_chr2_29576785_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Med27|Rapgef1_chr2_29576785_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_RP23-394M5.2|RP23-394M5.1_chr8_87376185_F | TCGTCGGCAGCGTCGTTGTTCTGGGACTGAGGGG | 59.9 | 0.27 |
| mm4_intergenic_RP23-394M5.2|RP23-394M5.1_chr8_87376185_R | GTCTCGTGGGCTCGGTGCAGTATAGGTGCCAGCAG | 59.8 | 0.27 |
| mm3_intergenic_Gm25200|Cdh13_chr8_118234000_F | TCGTCGGCAGCGTCTTCCACCTGCAGCAGACATC | 60.3 | 0.26 |
| mm3_intergenic_Gm25200|Cdh13_chr8_118234000_R | GTCTCGTGGGCTCGGTGCAGAAAACCTTCCTGGCT | 59.8 | 0.26 |
| mm4_intron_Thada_chr17_84257773_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Thada_chr17_84257773_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Lrpap1|Adra2c_chr5_35147549_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Lrpap1|Adra2c_chr5_35147549_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_Ppm1h_chr10_122928850_F | TCGTCGGCAGCGTCAGTGGCAAAGTGGAGATGGG | 59.9 | 0.25 |
| mm4_intron_Ppm1h_chr10_122928850_R | GTCTCGTGGGCTCGGGATGACTGGGCTCTCACACC | 60.1 | 0.25 |
| mm4_intron_Dnajc13_chr9_104204302_F | TCGTCGGCAGCGTCCGACACGTTATGCATGGCTG | 59.9 | 0.25 |
| mm4_intron_Dnajc13_chr9_104204302_R | GTCTCGTGGGCTCGGACAAAGGACGAGCTGAAGCA | 59.8 | 0.25 |
| mm4_intergenic_Shank3|Gm15609/Shank3_chr15_89508270_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Shank3|Gm15609/Shank3_chr15_89508270_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_Pik3cb_chr9_99042277_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Pik3cb_chr9_99042277_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Nfia_chr4_98082778_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Nfia_chr4_98082778_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Trabd2b_chr4_114504812_F | TCGTCGGCAGCGTCGGCCTCCTTGGTTGCTGAAA | 60.8 | 0.24 |
| mm4_intron_Trabd2b_chr4_114504812_R | GTCTCGTGGGCTCGGTGCCTCTCTCCTCTGAAGCA | 60.2 | 0.24 |
| mm4_intron_Kcnj6_chr16_94812845_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Kcnj6_chr16_94812845_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Lats1|Katna1_chr10_7719823_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Lats1|Katna1_chr10_7719823_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm26416|Dap_chr15_31222589_F | TCGTCGGCAGCGTCCCCTTACCCAGAAGTCAGCC | 59.7 | 0.23 |
| mm4_intergenic_Gm26416|Dap_chr15_31222589_R | GTCTCGTGGGCTCGGGGGCCCAGATACCAGGTTTC | 60.1 | 0.23 |
| mm4_intron_Morn5_chr2_36060717_F | TCGTCGGCAGCGTCCGTTTGCAGAAGTAAGGCTGT | 59.1 | 0.23 |
| mm4_intron_Morn5_chr2_36060717_R | GTCTCGTGGGCTCGGGCACTGGAATACAACTCAAACCT | 59.1 | 0.23 |
| mm3_intergenic_Vmn2r-ps77|Vmn2r73_chr7_85840707_F | TCGTCGGCAGCGTCTGCCTTGCTCTCAGCTTTGA | 59.8 | 0.23 |
| mm3_intergenic_Vmn2r-ps77|Vmn2r73_chr7_85840707_R | GTCTCGTGGGCTCGGCCAGCCAGCAGAGGAAAACA | 60.5 | 0.23 |
| mm4_intergenic_Zfp799|Zfp870_chr17_32877596_F | TCGTCGGCAGCGTCTGCAACACCCAAAGCTCAGA | 60.1 | 0.23 |
| mm4_intergenic_Zfp799|Zfp870_chr17_32877596_R | GTCTCGTGGGCTCGGTACCGCTGATACTGCTTGCC | 60.1 | 0.23 |
| mm4_intron_1700007M16Rik_chr2_171235233_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_1700007M16Rik_chr2_171235233_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Prlr_chr15_10267418_F | TCGTCGGCAGCGTCACGTTTGGCATTTCACATCTGT | 59.3 | 0.22 |
| mm4_intron_Prlr_chr15_10267418_R | GTCTCGTGGGCTCGGACTTAGGTGCCATGGCTCTG | 59.7 | 0.22 |
| mm4_intergenic_Zfp957|Rgcc_chr14_79248667_F | TCGTCGGCAGCGTCCTTCCCATCTTGGCTCAGGG | 60.1 | 0.22 |
| mm4_intergenic_Zfp957|Rgcc_chr14_79248667_R | GTCTCGTGGGCTCGGTTCAACAGCAGGGACGTCTC | 59.9 | 0.22 |
| mm4_intron_Urb1_chr16_90798565_F | TCGTCGGCAGCGTCTCCGAGTTGGCTTGGTTCTG | 60.2 | 0.22 |
| mm4_intron_Urb1_chr16_90798565_R | GTCTCGTGGGCTCGGCAGACGGAGCACTAGGTGTC | 59.8 | 0.22 |
| mm4_intron_Tln2_chr9_67429729_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Tln2_chr9_67429729_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_exon_Gramd1b/1700110K17Rik_chr9_40333639_F | TCGTCGGCAGCGTCGTCTCCGTCCTGGTTCTGTG | 60.0 | 0.21 |
| mm4_exon_Gramd1b/1700110K17Rik_chr9_40333639_R | GTCTCGTGGGCTCGGCCATCTCATTCCCCGTCTCC | 59.6 | 0.21 |
| mm3_exon_Tbc1d20_chr2_152304970_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_exon_Tbc1d20_chr2_152304970_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm22024|Gm26721_chr8_83875456_F | TCGTCGGCAGCGTCCAAACACCACTCCTCCCCTC | 59.9 | 0.20 |
| mm4_intergenic_Gm22024|Gm26721_chr8_83875456_R | GTCTCGTGGGCTCGGCTGCCCCTTCTCCCTTCATC | 59.8 | 0.20 |
| mm3_intergenic_Gm14141|Ninl_chr2_151000876_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm3_intergenic_Gm14141|Ninl_chr2_151000876_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_exon_Mtus2_chr5_148076955_F | TCGTCGGCAGCGTCAGCTGAAGAGAGCAAGCAGC | 60.6 | 0.20 |
| mm4_exon_Mtus2_chr5_148076955_R | GTCTCGTGGGCTCGGACTGGCTGGTGTCCTTTGTG | 60.4 | 0.20 |
| mm4_exon_Gm6498_chr14_48227968_F | TCGTCGGCAGCGTCAGCTCACTGGCATCACCTTC | 60.0 | 0.20 |
| mm4_exon_Gm6498_chr14_48227968_R | GTCTCGTGGGCTCGGCTTCAGTGGGCCCTCAGATG | 60.1 | 0.20 |
| mm4_intergenic_Gm26455|Gm15754_chr5_118478392_F | TCGTCGGCAGCGTCACAGGAAACGCAGGAAACCA | 60.1 | 0.19 |
| mm4_intergenic_Gm26455|Gm15754_chr5_118478392_R | GTCTCGTGGGCTCGGATTAGGAAGGCGGAACCACC | 59.7 | 0.19 |
| mm4_intron_Arhgap24_chr5_102660535_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Arhgap24_chr5_102660535_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Casz1_chr4_148941137_F | TCGTCGGCAGCGTCGTGATCTCGTCAGCCGGAAG | 60.5 | 0.19 |
| mm4_intron_Casz1_chr4_148941137_R | GTCTCGTGGGCTCGGAGGGGCTCAGGTTTAACACG | 59.9 | 0.19 |
| mm3_intergenic_4933412E24Rik|Gm25875_chr15_60025666_F | TCGTCGGCAGCGTCGCGCAGAGCTAAGGAGGAAA | 60.1 | 0.19 |
| mm3_intergenic_4933412E24Rik|Gm25875_chr15_60025666_R | GTCTCGTGGGCTCGGAGCCCAACACATTCCCTCAG | 59.9 | 0.19 |
| mm4_intron_Arhgap12_chr18_6035685_F | TCGTCGGCAGCGTCTCGCTTGCTTCATTCTCTGT | 57.5 | 0.19 |
| mm4_intron_Arhgap12_chr18_6035685_R | GTCTCGTGGGCTCGGCTGTGGTGATGAGGAGGTGT | 59.0 | 0.19 |
| mm4_intron_Asap1_chr15_64113202_F | TCGTCGGCAGCGTCCTTGGCATGACAGACCCCAT | 60.0 | 0.18 |
| mm4_intron_Asap1_chr15_64113202_R | GTCTCGTGGGCTCGGGGCTGAAAATGCTGCCCTG | 59.7 | 0.18 |
| mm4_intron_6330403A02Rik_chr1_180455217_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_6330403A02Rik_chr1_180455217_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Stac|Arpp21_chr9_111719405_F | TCGTCGGCAGCGTCGTAGCGTGGCTGTCTGAGTT | 60.0 | 0.18 |
| mm4_intergenic_Stac|Arpp21_chr9_111719405_R | GTCTCGTGGGCTCGGCAGTCACCCAGCAGCACTG | 60.9 | 0.18 |
| mm4_intergenic_Steap3|C1ql2_chr1_120323469_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Steap3|C1ql2_chr1_120323469_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm24965|Manea_chr4_25996847_F | TCGTCGGCAGCGTCAGCAAGGGATTTGGGGTGAG | 59.9 | 0.17 |
| mm4_intergenic_Gm24965|Manea_chr4_25996847_R | GTCTCGTGGGCTCGGGGAGCCATGAAGCATGTCCT | 60.1 | 0.17 |
| mm4_intergenic_D3Ertd254e|Qrfpr_chr3_36177932_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_D3Ertd254e|Qrfpr_chr3_36177932_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Zfp568_chr7_30018432_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Zfp568_chr7_30018432_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Pten|Gm22482_chr19_32859966_F | TCGTCGGCAGCGTCTGCCCATTACACCAACAGCA | 60.1 | 0.16 |
| mm4_intergenic_Pten|Gm22482_chr19_32859966_R | GTCTCGTGGGCTCGGAATGGGCACTGCTGTTGGTA | 59.8 | 0.16 |
| mm4_intergenic_Pten|Gm22482_chr19_32859882_F | TCGTCGGCAGCGTCGCTGCCAATTTCACCACCAG | 60.0 | 0.16 |
| mm4_intergenic_Pten|Gm22482_chr19_32859882_R | GTCTCGTGGGCTCGGAATGGGCACTGCTGTTGGTA | 59.8 | 0.16 |
| mm4_intergenic_Slc38a4|Amigo2_chr15_97100956_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Slc38a4|Amigo2_chr15_97100956_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Ddr2_chr1_170106310_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Ddr2_chr1_170106310_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Tm4sf20|Gm22396/Agfg1_chr1_82792609_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Tm4sf20|Gm22396/Agfg1_chr1_82792609_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Rims1_chr1_22650050_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Rims1_chr1_22650050_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Penk/A830012C17Rik|A830012C17Rik_chr4_4149546_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Penk/A830012C17Rik|A830012C17Rik_chr4_4149546_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm13343|Otud1_chr2_19653155_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm13343|Otud1_chr2_19653155_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Cd99l2|Gm8421_chrX_71494187_F | TCGTCGGCAGCGTCGGGGTGATGGAGTGGTAGGA | 60.3 | 0.15 |
| mm4_intergenic_Cd99l2|Gm8421_chrX_71494187_R | GTCTCGTGGGCTCGGAGGCAGGTCATCTTTTATGCT | 57.3 | 0.15 |
| mm4_intergenic_Ctps|Gm8439_chr4_120582434_F | TCGTCGGCAGCGTCCAGAGGCAGAGTGTGGGAAG | 60.0 | 0.15 |
| mm4_intergenic_Ctps|Gm8439_chr4_120582434_R | GTCTCGTGGGCTCGGGGTGTGTCTGGCTGGAAGAC | 60.6 | 0.15 |
| mm4_intergenic_Dusp10|Gm23349_chr1_184344029_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Dusp10|Gm23349_chr1_184344029_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Stac|Arpp21_chr9_111719465_F | TCGTCGGCAGCGTCTGAGTTGTGCTTGACCACGT | 60.1 | 0.15 |
| mm4_intergenic_Stac|Arpp21_chr9_111719465_R | GTCTCGTGGGCTCGGGAGAGCAGACCTGACAGCAC | 60.3 | 0.15 |
| mm4_intergenic_Stac|Arpp21_chr9_111719435_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Stac|Arpp21_chr9_111719435_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_exon_Qprt_chr7_127108452_F | TCGTCGGCAGCGTCTACCTTCAGGGAAAACCCGG | 59.3 | 0.15 |
| mm3_exon_Qprt_chr7_127108452_R | GTCTCGTGGGCTCGGTCAAAGCACAGCTCTCTGGG | 59.9 | 0.15 |
| mm4_intergenic_Pdzrn4|Gm4335_chr15_92896008_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Pdzrn4|Gm4335_chr15_92896008_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm24248|Rybp_chr6_100159759_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm24248|Rybp_chr6_100159759_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Pip4k2a_chr2_18903827_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Pip4k2a_chr2_18903827_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Rbms3|Gm26614_chr9_117671348_F | TCGTCGGCAGCGTCTCTGTTGTGGGCTTCAGTCC | 59.8 | 0.14 |
| mm4_intergenic_Rbms3|Gm26614_chr9_117671348_R | GTCTCGTGGGCTCGGAGTTCTCTCATTTGTTGTTTCTCCA | 58.8 | 0.14 |
| mm4_intron_Dock2_chr11_34271201_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Dock2_chr11_34271201_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_4933401P06Rik|Ppp2r2c_chr5_36890939_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_4933401P06Rik|Ppp2r2c_chr5_36890939_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_exon_Tmem26_chr10_68779660_F | TCGTCGGCAGCGTCCGGGACCGTTGACATCTGAA | 60.0 | 0.13 |
| mm4_exon_Tmem26_chr10_68779660_R | GTCTCGTGGGCTCGGCCCCTACCAGAAACCATGGT | 59.0 | 0.13 |
| mm4_intergenic_4930428N03Rik|Gm10398_chr14_24792282_F | TCGTCGGCAGCGTCAAGACACTAGAAGAGATGCTTGT | 57.2 | 0.12 |
| mm4_intergenic_4930428N03Rik|Gm10398_chr14_24792282_R | GTCTCGTGGGCTCGGCCGGGGACAGACAGACAAAT | 59.6 | 0.12 |
| mm4_intergenic_1700003M07Rik|Bai2_chr4_129983356_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_1700003M07Rik|Bai2_chr4_129983356_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Cep120|Csnk1g3_chr18_53744718_F | TCGTCGGCAGCGTCATAGAACGTCCATCAGCCGC | 60.2 | 0.12 |
| mm4_intergenic_Cep120|Csnk1g3_chr18_53744718_R | GTCTCGTGGGCTCGGTGGTGGTTCAAGTCTCCTGC | 59.8 | 0.12 |
| mm4_intergenic_Nkx1-1|Fam53a_chr5_33545899_F | TCGTCGGCAGCGTCTGGTGACAGGAGAAGCCATG | 59.6 | 0.12 |
| mm4_intergenic_Nkx1-1|Fam53a_chr5_33545899_R | GTCTCGTGGGCTCGGGCAGACTTGCTCCCACTTGT | 60.5 | 0.12 |
| mm4_intron_Gm15800_chr5_121331149_F | TCGTCGGCAGCGTCTCTCAGTGGGAAGAGTGGGA | 59.5 | 0.12 |
| mm4_intron_Gm15800_chr5_121331149_R | GTCTCGTGGGCTCGGTGACTTACAAGGCTGCAGCA | 59.8 | 0.12 |
| mm4_intergenic_Med30|Ext1_chr15_52898587_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Med30|Ext1_chr15_52898587_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Stk24_chr14_121332632_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Stk24_chr14_121332632_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intron_Agap1_chr1_89791486_F | TCGTCGGCAGCGTCTCCAGGCAAAGCACAAGTGT | 60.3 | 0.11 |
| mm3_intron_Agap1_chr1_89791486_R | GTCTCGTGGGCTCGGGAGGCCATGAGCAGAAGACC | 60.4 | 0.11 |
| mm4_intergenic_Fez2|Gm10093_chr17_78453156_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Fez2|Gm10093_chr17_78453156_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Znfx1/1500012F01Rik/ZNFX1-AS1_1/Gm25878_chr2_167062749_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Znfx1/1500012F01Rik/ZNFX1-AS1_1/Gm25878_chr2_167062749_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Gorasp2/Tlk1_chr2_70712289_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Gorasp2/Tlk1_chr2_70712289_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Bin1_chr18_32410857_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Bin1_chr18_32410857_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Ppfibp2_chr7_107702685_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Ppfibp2_chr7_107702685_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_exon_Gon4l_chr3_88895260_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_exon_Gon4l_chr3_88895260_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gpbp1|Gm15290_chr13_111493778_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gpbp1|Gm15290_chr13_111493778_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Tmem40_chr6_115736660_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Tmem40_chr6_115736660_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Slc25a13_chr6_6184270_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Slc25a13_chr6_6184270_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Kif27|2210016F16Rik_chr13_58374037_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Kif27|2210016F16Rik_chr13_58374037_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_n-R5s209|Gm7846_chr1_28103698_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_n-R5s209|Gm7846_chr1_28103698_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm5742|Gm22223_chr8_100728985_F | TCGTCGGCAGCGTCTCAAGTAGCTACAGTCTTGCAA | 57.3 | 0.09 |
| mm4_intergenic_Gm5742|Gm22223_chr8_100728985_R | GTCTCGTGGGCTCGGGCCATTTTGCTGGGCAGAAA | 59.9 | 0.09 |
| mm4_intron_Adamts2_chr11_50631922_F | TCGTCGGCAGCGTCGGTTCCAGTGTGACAGAGGG | 59.9 | 0.09 |
| mm4_intron_Adamts2_chr11_50631922_R | GTCTCGTGGGCTCGGGCCAACCAAGAGCCAAAAGG | 59.9 | 0.09 |
| mm4_intergenic_Gm831|Gm12962_chr4_131608254_F | TCGTCGGCAGCGTCGCACCAGAGCACCTAAGAGG | 60.1 | 0.09 |
| mm4_intergenic_Gm831|Gm12962_chr4_131608254_R | GTCTCGTGGGCTCGGAGCTTCTCCTTGGCACCTTC | 59.9 | 0.09 |
| mm4_exon_Cd5_chr19_10738821_F | TCGTCGGCAGCGTCCACAGGTATTCAGCCTGGCA | 60.0 | 0.08 |
| mm4_exon_Cd5_chr19_10738821_R | GTCTCGTGGGCTCGGCTGAGCTCACTGAGGCTGAG | 59.8 | 0.08 |
| mm4_intergenic_Gm25748|Creb1_chr1_64448825_F | TCGTCGGCAGCGTCCCAGGACAGTGCACAGCTTA | 59.9 | 0.08 |
| mm4_intergenic_Gm25748|Creb1_chr1_64448825_R | GTCTCGTGGGCTCGGCCTCTCCACAGTTCCCACAC | 59.9 | 0.08 |
| mm4_exon_Aqp12_chr1_93006938_F | TCGTCGGCAGCGTCTTCCATCTGAGCCTCCTCCA | 59.9 | 0.08 |
| mm4_exon_Aqp12_chr1_93006938_R | GTCTCGTGGGCTCGGGCAGAGAGGGGAGCAAGTTT | 59.9 | 0.08 |
| mm4_intron_Tmem131_chr1_36873010_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Tmem131_chr1_36873010_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intron_Samd4_chr14_47093229_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intron_Samd4_chr14_47093229_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Snap91|Ripply2_chr9_86952442_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Snap91|Ripply2_chr9_86952442_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Ubac1|Nacc2/Gm13554_chr2_26049047_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Ubac1|Nacc2/Gm13554_chr2_26049047_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm13378|Gm13327_chr2_21260741_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm13378|Gm13327_chr2_21260741_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm22218|Zmym2_chr14_56887291_F | TCGTCGGCAGCGTCTTGGCTGGGTCTCTAATGGC | 59.7 | 0.08 |
| mm4_intergenic_Gm22218|Zmym2_chr14_56887291_R | GTCTCGTGGGCTCGGTTGCCCATATTTGCCCCAAG | 58.7 | 0.08 |
| mm4_exon_Gm17435_chr8_72504789_F | TCGTCGGCAGCGTCCAAAGCACTTTGGAGGCACC | 59.9 | 0.08 |
| mm4_exon_Gm17435_chr8_72504789_R | GTCTCGTGGGCTCGGGTCATGCTGGAGCTCATGGT | 60.1 | 0.08 |
| mm4_intergenic_Gm9387|Pitx2_chr3_129111914_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm9387|Pitx2_chr3_129111914_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm13552|Tanc1_chr2_59571564_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm13552|Tanc1_chr2_59571564_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm2_intergenic_Ift81|P2rx7_chr5_122642416_F | TCGTCGGCAGCGTCGGCCTCCCGAGTAAACAGAG | 59.8 | 0.07 |
| mm2_intergenic_Ift81|P2rx7_chr5_122642416_R | GTCTCGTGGGCTCGGCCCTGTTGGCTCCAGTTCAA | 60.1 | 0.07 |
| mm4_intergenic_n-R5s42|Fam19a5_chr15_87622687_F | TCGTCGGCAGCGTCCAGTTCACCTGCTCCTCTGG | 60.0 | 0.07 |
| mm4_intergenic_n-R5s42|Fam19a5_chr15_87622687_R | GTCTCGTGGGCTCGGAGGTGCTAAGCCCTCCTACT | 59.6 | 0.07 |
| mm3_intergenic_Spo11|Rae1_chr2_172998515_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Spo11|Rae1_chr2_172998515_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_9330185C12Rik|Cntnap5a_chr1_114921484_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_9330185C12Rik|Cntnap5a_chr1_114921484_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Arhgef28_chr13_98110495_F | TCGTCGGCAGCGTCATGTTGGCTGTCAGATCGCA | 60.0 | 0.07 |
| mm4_intron_Arhgef28_chr13_98110495_R | GTCTCGTGGGCTCGGCACAGAAGAGCTTGGGCAGA | 59.9 | 0.07 |
| mm4_intron_Acat1_chr9_53602340_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Acat1_chr9_53602340_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Fer|Pja2_chr17_64186777_F | TCGTCGGCAGCGTCCTGTAGCCGTGGCAAGAAGA | 60.0 | 0.07 |
| mm3_intergenic_Fer|Pja2_chr17_64186777_R | GTCTCGTGGGCTCGGCAGCTTCTGCCCATTACCCA | 60.0 | 0.07 |
| mm4_intergenic_Lgals2|Gm26634_chr15_78862670_F | TCGTCGGCAGCGTCCATGGGTCTCTGCTGTGGTT | 59.9 | 0.07 |
| mm4_intergenic_Lgals2|Gm26634_chr15_78862670_R | GTCTCGTGGGCTCGGGCAGATTCCACCCTGTGAGG | 60.3 | 0.07 |
| mm3_intergenic_Eci2|Gm22674_chr13_35289006_F | TCGTCGGCAGCGTCGCAAGGGGTACAGGAAATGC | 59.1 | 0.07 |
| mm3_intergenic_Eci2|Gm22674_chr13_35289006_R | GTCTCGTGGGCTCGGGGGACCAAAGCTGCAAAAGG | 59.9 | 0.07 |
| mm4_exon_Cstf1_chr2_172380443_F | TCGTCGGCAGCGTCACAGGCAGTGTTCAACCACA | 60.0 | 0.07 |
| mm4_exon_Cstf1_chr2_172380443_R | GTCTCGTGGGCTCGGCTATGCAGCGCACGATGTTG | 60.3 | 0.07 |
| mm4_intron_1110008L16Rik_chr12_55363539_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_1110008L16Rik_chr12_55363539_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Scml4_chr10_42867558_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Scml4_chr10_42867558_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm2_exon_Upk2_chr9_44452796_F | TCGTCGGCAGCGTCACGTGGGTCAGCCTTTATTGT | 59.9 | 0.07 |
| mm2_exon_Upk2_chr9_44452796_R | GTCTCGTGGGCTCGGGAGTCCACTCCTGACAGTGC | 60.0 | 0.07 |
| mm3_intergenic_Ncoa2|Tram1_chr1_13516526_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Ncoa2|Tram1_chr1_13516526_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Nsun3_chr16_62779812_F | TCGTCGGCAGCGTCAAGTTCCAGGACAAAGGCGG | 60.5 | 0.07 |
| mm4_exon_Nsun3_chr16_62779812_R | GTCTCGTGGGCTCGGAGCCACATCATCCAGCAAGA | 59.3 | 0.07 |
| mm4_intron_Prdm1_chr10_44486068_F | TCGTCGGCAGCGTCATGAAGCCTTCAGCCTTTGC | 59.1 | 0.06 |
| mm4_intron_Prdm1_chr10_44486068_R | GTCTCGTGGGCTCGGTCACGGGCTTGGTCTTGTTT | 60.1 | 0.06 |
| mm4_intergenic_St6galnac3|Gm22136_chr3_153529915_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_St6galnac3|Gm22136_chr3_153529915_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Eefsec_chr6_88277444_F | TCGTCGGCAGCGTCGCAGACAGATGGGGACTGAG | 59.8 | 0.06 |
| mm4_intron_Eefsec_chr6_88277444_R | GTCTCGTGGGCTCGGAGCTCTTCCATCCTTGGCAC | 60.0 | 0.06 |
| mm4_intergenic_Gm40|Gm4853_chrX_38389140_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm40|Gm4853_chrX_38389140_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm14885|BC049702_chrX_19463273_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm14885|BC049702_chrX_19463273_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm10000|Dicer1_chr12_104626448_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm10000|Dicer1_chr12_104626448_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Unc93b1_chr19_3948626_F | TCGTCGGCAGCGTCAGGAGTGTGGTGTCTCTCCT | 59.5 | 0.06 |
| mm4_exon_Unc93b1_chr19_3948626_R | GTCTCGTGGGCTCGGTATGAGGCTGCTGCTGCTAC | 59.8 | 0.06 |
| mm3_intergenic_Gm7589|Adpgk_chr9_59167295_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Gm7589|Adpgk_chr9_59167295_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rassf8|Bhlhe41_chr6_145846891_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Rassf8|Bhlhe41_chr6_145846891_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Bmpr1b_chr3_141931763_F | TCGTCGGCAGCGTCTTTGACCTAGACGCCCACAC | 59.9 | 0.05 |
| mm4_intron_Bmpr1b_chr3_141931763_R | GTCTCGTGGGCTCGGTGTTTTCTGACAGCAAACCGC | 60.2 | 0.05 |
| mm4_intron_Plekho2_chr9_65561250_F | TCGTCGGCAGCGTCAGTACAGTGCACTTGGCCTG | 60.2 | 0.05 |
| mm4_intron_Plekho2_chr9_65561250_R | GTCTCGTGGGCTCGGGCCTGGTCATGCAAATGAGC | 60.1 | 0.05 |
| mm4_intergenic_Gm8935|Gm2464_chr3_13090636_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm8935|Gm2464_chr3_13090636_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Slc9a3r2_chr17_24641189_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intron_Slc9a3r2_chr17_24641189_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_4930584F24Rik_chr5_26473018_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_4930584F24Rik_chr5_26473018_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_9330159F19Rik|Echdc1_chr10_29281527_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_9330159F19Rik|Echdc1_chr10_29281527_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Zfp169_chr13_48508247_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Zfp169_chr13_48508247_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Mrpl28|Axin1_chr17_26131141_F | TCGTCGGCAGCGTCTCTGAAGGGACACTGGCATG | 59.6 | 0.04 |
| mm4_intergenic_Mrpl28|Axin1_chr17_26131141_R | GTCTCGTGGGCTCGGGCAACCAGCCCCTTTAGACA | 60.2 | 0.04 |
| mm4_intergenic_Hsd3b4|Gm10681_chr3_98514677_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Hsd3b4|Gm10681_chr3_98514677_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm4450|Hsd3b4_chr3_98461238_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm4450|Hsd3b4_chr3_98461238_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Tfdp1_chr8_13368317_F | TCGTCGGCAGCGTCCCTTCATGCTGGTGTGGGAT | 60.0 | 0.04 |
| mm4_intron_Tfdp1_chr8_13368317_R | GTCTCGTGGGCTCGGCTCCCCATCCCCAGACAGTA | 60.0 | 0.04 |
| mm4_exon_Foxb2_chr19_16872793_F | TCGTCGGCAGCGTCGACAACATTGCTGAGCTGGC | 60.1 | 0.04 |
| mm4_exon_Foxb2_chr19_16872793_R | GTCTCGTGGGCTCGGGCTTCAAACATCCGTTCGCC | 60.4 | 0.04 |
| mm4_intergenic_A630010A05Rik|Snai2_chr16_14639642_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_A630010A05Rik|Snai2_chr16_14639642_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Olfr58|Olfr859_chr9_19791049_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Olfr58|Olfr859_chr9_19791049_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Syne3_chr12_104967997_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Syne3_chr12_104967997_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Sfrp1|Zmat4_chr8_23535506_F | TCGTCGGCAGCGTCACCACACATCTCAGCAGTGG | 59.9 | 0.03 |
| mm4_intergenic_Sfrp1|Zmat4_chr8_23535506_R | GTCTCGTGGGCTCGGTGTCCTCTTGAGACCCAGGA | 59.5 | 0.03 |
| mm4_intron_Gpc6_chr14_117030268_F | TCGTCGGCAGCGTCCGGTGCATTAGAGTTAAGTACAAGG | 59.7 | 0.03 |
| mm4_intron_Gpc6_chr14_117030268_R | GTCTCGTGGGCTCGGTATCTCTCCCTTGGCAGCAC | 59.1 | 0.03 |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45865590_F | TCGTCGGCAGCGTCCCCCTCCCTCAGGTTTCAAA | 59.2 | 0.03 |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45865590_R | GTCTCGTGGGCTCGGGACTCCTCCAACTGCTTGCT | 59.9 | 0.03 |
| mm4_intergenic_Col13a1|Gm5424_chr10_62006184_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Col13a1|Gm5424_chr10_62006184_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm23501|Gm22746_chrX_163106745_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm23501|Gm22746_chrX_163106745_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_8430427H17Rik|Commd7_chr2_153613873_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_8430427H17Rik|Commd7_chr2_153613873_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_RP23-199B2.4/5830417I10Rik_chr3_88820488_F | TCGTCGGCAGCGTCCAGACACTTCCAGGGTTCCC | 59.9 | 0.03 |
| mm4_exon_RP23-199B2.4/5830417I10Rik_chr3_88820488_R | GTCTCGTGGGCTCGGCTCAGACAAGGGGAAGCTGG | 60.0 | 0.03 |
| mm4_exon_5830417I10Rik_chr3_88816450_F | TCGTCGGCAGCGTCCAGACACTTCCAGGGTTCCC | 59.9 | 0.03 |
| mm4_exon_5830417I10Rik_chr3_88816450_R | GTCTCGTGGGCTCGGCTCAGACAAGGGGAAGCTGG | 60.0 | 0.03 |
| mm4_intergenic_Gm8805|Crygf_chr1_65796687_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm8805|Crygf_chr1_65796687_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm8399/Gm25241|9330111N05Rik_chr13_81067787_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm8399/Gm25241|9330111N05Rik_chr13_81067787_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25598|BC002059_chr17_16544228_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25598|BC002059_chr17_16544228_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm21818|Gm21762_chr13_120179755_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm21818|Gm21762_chr13_120179755_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Olfr723|Olfr724_chr14_49951563_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Olfr723|Olfr724_chr14_49951563_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Casp8_chr1_58824612_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Casp8_chr1_58824612_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6367|Gm7942_chr5_95101890_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6367|Gm7942_chr5_95101890_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6205|Gm3183_chr5_94771647_F | TCGTCGGCAGCGTCACCAGGGATAGGCTCATTCT | 57.4 | 0.02 |
| mm4_intergenic_Gm6205|Gm3183_chr5_94771647_R | GTCTCGTGGGCTCGGGGGTCAGGGAGAATGGCTTC | 60.1 | 0.02 |
| mm4_intergenic_Gm3259|D5Ertd577e_chr5_95419359_F | TCGTCGGCAGCGTCACCAGGGATAGGCTCATTCT | 57.4 | 0.02 |
| mm4_intergenic_Gm3259|D5Ertd577e_chr5_95419359_R | GTCTCGTGGGCTCGGGGGTCAGGGAGAATGGCTTC | 60.1 | 0.02 |
| mm4_intergenic_GM6367|AC123873.1_chr5_JH584299_random_83953_F | TCGTCGGCAGCGTCAGTCCACTGACAACTGTCCT | 58.2 | 0.02 |
| mm4_intergenic_GM6367|AC123873.1_chr5_JH584299_random_83953_R | GTCTCGTGGGCTCGGCACAGCAGAGATTGTGGGGT | 59.9 | 0.02 |
| mm4_intergenic_C87414|AC140365.1_chr5_JH584299_random_711247_F | TCGTCGGCAGCGTCACCAGGGATAGGCTCATTCT | 57.4 | 0.02 |
| mm4_intergenic_C87414|AC140365.1_chr5_JH584299_random_711247_R | GTCTCGTGGGCTCGGGGGTCAGGGAGAATGGCTTC | 60.1 | 0.02 |
| mm4_intergenic_AC126035.1|Gm16367_chr5_JH584299_random_390428_F | TCGTCGGCAGCGTCACCAGGGATAGGCTCATTCT | 57.4 | 0.02 |
| mm4_intergenic_AC126035.1|Gm16367_chr5_JH584299_random_390428_R | GTCTCGTGGGCTCGGGGGTCAGGGAGAATGGCTTC | 60.1 | 0.02 |
| mm3_intron_Spon1_chr7_113979678_F | TCGTCGGCAGCGTCTAGAGCATCCTTCCCTGGGT | 59.6 | 0.02 |
| mm3_intron_Spon1_chr7_113979678_R | GTCTCGTGGGCTCGGTAGGGGAGGACTTTGGGAGG | 59.9 | 0.02 |
| mm4_intergenic_Efnb1|Gm14812_chrX_99295626_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Efnb1|Gm14812_chrX_99295626_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm2_intergenic_Gm16210|Rev3l_chr10_39769304_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm2_intergenic_Gm16210|Rev3l_chr10_39769304_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Pcx_chr19_4619045_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Pcx_chr19_4619045_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Mylk3|4921524J17Rik_chr8_85398244_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Mylk3|4921524J17Rik_chr8_85398244_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Agrn_chr4_156166668_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Agrn_chr4_156166668_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm9964|Nf1_chr11_79301725_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm9964|Nf1_chr11_79301725_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Vmn1r79|Vmn1r80_chr7_12183040_F | TCGTCGGCAGCGTCTGTTCACTTGTATGCCACAGC | 59.1 | 0.02 |
| mm4_intergenic_Vmn1r79|Vmn1r80_chr7_12183040_R | GTCTCGTGGGCTCGGACGATGCCAGTGATGTTGGT | 59.9 | 0.02 |
| mm4_exon_Slc22a19_chr19_7674401_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Slc22a19_chr19_7674401_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Usp12_chr5_146753173_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Usp12_chr5_146753173_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Iqck_chr7_118934650_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Iqck_chr7_118934650_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_83993547_F | TCGTCGGCAGCGTCAGAAGCCAATGAGGAGCCAC | 60.0 | 0.01 |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_83993547_R | GTCTCGTGGGCTCGGCAATACCTCCCTTCCCCAGC | 59.8 | 0.01 |
| mm4_intergenic_Gadd45g|Gm26651_chr13_51913827_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gadd45g|Gm26651_chr13_51913827_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intron_Vav3_chr3_109561488_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intron_Vav3_chr3_109561488_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ggta1_chr2_35457766_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ggta1_chr2_35457766_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_mmu-mir-6393|Zdhhc25_chr15_88264110_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_mmu-mir-6393|Zdhhc25_chr15_88264110_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_Ccdc32_chr2_119017916_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_Ccdc32_chr2_119017916_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm14988|Il1rapl2_chrX_137650462_F | TCGTCGGCAGCGTCCCTGGTGAGGTTTATGCCCT | 59.3 | 0.01 |
| mm4_intergenic_Gm14988|Il1rapl2_chrX_137650462_R | GTCTCGTGGGCTCGGACGAATGGAAGAAAACCTAGGT | 57.3 | 0.01 |
| mm4_intergenic_Gm13172|Gm833_chr4_152690545_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13172|Gm833_chr4_152690545_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dnmbp_chr19_43887658_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dnmbp_chr19_43887658_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Arhgap24_chr5_102846900_F | TCGTCGGCAGCGTCAAGTTAGGGCAGCTGCTGAG | 60.0 | 0.01 |
| mm4_intron_Arhgap24_chr5_102846900_R | GTCTCGTGGGCTCGGGACAGCCGACCCAGAAGAC | 60.0 | 0.01 |
| mm4_intergenic_Gm3848|Ptprg_chr14_12036495_F | TCGTCGGCAGCGTCCCGTATGACCATCCTGCCAA | 59.8 | 0.01 |
| mm4_intergenic_Gm3848|Ptprg_chr14_12036495_R | GTCTCGTGGGCTCGGAGCCTCCTGAGCCTGCATAT | 60.7 | 0.01 |
| mm3_intergenic_Gm15616|Gabrb1_chr5_72092395_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm15616|Gabrb1_chr5_72092395_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_9430025C20Rik_chr4_3808478_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_9430025C20Rik_chr4_3808478_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Chic1|Tsx_chrX_103414078_F | TCGTCGGCAGCGTCCTGGCCCATTTCCTCACCTC | 60.3 | 0.01 |
| mm4_intergenic_Chic1|Tsx_chrX_103414078_R | GTCTCGTGGGCTCGGCCCTTCCAGTTTCCAGCACT | 59.8 | 0.01 |
| mm4_intron_Tenm4_chr7_96699383_F | TCGTCGGCAGCGTCCCCAGGTTGGCATGCTATCA | 60.1 | 0.01 |
| mm4_intron_Tenm4_chr7_96699383_R | GTCTCGTGGGCTCGGCCCTTAAAAGCCCAGAGCCA | 59.9 | 0.01 |
| mm4_intron_Pomp_chr5_147869862_F | TCGTCGGCAGCGTCACTGCTTCAGGGAACAGCTC | 59.9 | 0.01 |
| mm4_intron_Pomp_chr5_147869862_R | GTCTCGTGGGCTCGGTGTGACTGCTTCTGATGAGCT | 59.3 | 0.01 |
| mm4_intron_Grip1_chr10_119998715_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Grip1_chr10_119998715_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Npvf|G930045G22Rik_chr6_50748487_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Npvf|G930045G22Rik_chr6_50748487_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cenpe_chr3_135244496_F | TCGTCGGCAGCGTCTTCTTTGAAAACACCTTCCCAC | 57.2 | 0.01 |
| mm4_intron_Cenpe_chr3_135244496_R | GTCTCGTGGGCTCGGCTGACAAACCCTGCCTCAGT | 59.8 | 0.01 |
| mm4_exon_Spred3_chr7_29161937_F | TCGTCGGCAGCGTCGAGGCTTTGGCTGGAGCA | 59.9 | 0.01 |
| mm4_exon_Spred3_chr7_29161937_R | GTCTCGTGGGCTCGGTCCTCCAGTGTCACTCCCTG | 60.5 | 0.01 |
| mm4_intergenic_Gm12095|Eml6_chr11_30018103_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm12095|Eml6_chr11_30018103_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_4930429F24Rik|Filip1_chr9_79810728_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_4930429F24Rik|Filip1_chr9_79810728_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ptk2_chr15_73223137_F | TCGTCGGCAGCGTCGCTTCTCATCAGACTGCAGC | 58.9 | 0.00 |
| mm4_intron_Ptk2_chr15_73223137_R | GTCTCGTGGGCTCGGCCCTGTGCATGTGAATCCCT | 60.0 | 0.00 |
| mm4_intron_Incenp_chr19_9894807_F | TCGTCGGCAGCGTCGCTTCCAAGGCTCCAGACAT | 60.0 | 0.00 |
| mm4_intron_Incenp_chr19_9894807_R | GTCTCGTGGGCTCGGAAACCGTCGGAAGAAGAGGC | 60.3 | 0.00 |
| mm4_intergenic_4933428C19Rik|Gm12391_chr4_40582760_F | TCGTCGGCAGCGTCATGTCCAACACGTCGCTTCA | 60.2 | 0.00 |
| mm4_intergenic_4933428C19Rik|Gm12391_chr4_40582760_R | GTCTCGTGGGCTCGGCAACATGGTCCCTGAGCTGT | 59.9 | 0.00 |
| mm4_intergenic_Gm12287|Gm12288_chr11_63770375_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12287|Gm12288_chr11_63770375_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_St6gal1_chr16_23326658_F | TCGTCGGCAGCGTCTGGTACCTGGGAGTTGACGA | 60.1 | 0.00 |
| mm4_intron_St6gal1_chr16_23326658_R | GTCTCGTGGGCTCGGGAACCATGAGAGTGCTGGGT | 59.6 | 0.00 |
| mm3_intron_Pls3_chrX_75812867_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Pls3_chrX_75812867_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pabpc6|Qk_chr17_9960672_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pabpc6|Qk_chr17_9960672_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25562|AI593442_chr9_52356144_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25562|AI593442_chr9_52356144_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Kirrel3_chr9_35027531_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Kirrel3_chr9_35027531_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rev1_chr1_38129208_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rev1_chr1_38129208_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Grin2a_chr16_9596747_F | TCGTCGGCAGCGTCACTTTGCCTCAACTGTAGGCA | 59.8 | 0.00 |
| mm4_intron_Grin2a_chr16_9596747_R | GTCTCGTGGGCTCGGACGATGGTCATCCTGTGCAT | 59.4 | 0.00 |
| mm4_intron_Prickle2_chr6_92673298_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Prickle2_chr6_92673298_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Defa-ps13_chr8_19304389_F | TCGTCGGCAGCGTCGAAAAGCAAAGGCAGGGCTG | 60.3 | 0.00 |
| mm4_intron_Defa-ps13_chr8_19304389_R | GTCTCGTGGGCTCGGGGACTCAAATGCTCCACCCA | 59.9 | 0.00 |
| mm4_intergenic_Zfp109|Zfp108_chr7_24237538_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Zfp109|Zfp108_chr7_24237538_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sorcs3_chr19_48671410_F | TCGTCGGCAGCGTCTTAGTCCTGCCATCCTGGGG | 60.9 | 0.00 |
| mm4_intron_Sorcs3_chr19_48671410_R | GTCTCGTGGGCTCGGCTGTGTCTCAGAGCTCTGGC | 60.1 | 0.00 |
| mm4_intron_Col18a1_chr10_77152775_F | TCGTCGGCAGCGTCGCCTTCTGCAGTTTGACTCC | 59.1 | 0.00 |
| mm4_intron_Col18a1_chr10_77152775_R | GTCTCGTGGGCTCGGCTCATGTCTCACCCATGCGT | 60.1 | 0.00 |
| mm4_intron_Afg3l1_chr8_123499902_F | TCGTCGGCAGCGTCGAGGGAAGCCTGTCTGACAC | 60.0 | 0.00 |
| mm4_intron_Afg3l1_chr8_123499902_R | GTCTCGTGGGCTCGGAAACAAGGGCAGAACGTCCA | 60.1 | 0.00 |
| mm4_intron_Adamts14_chr10_61226701_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Adamts14_chr10_61226701_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tshz2|AY702102_chr2_169942032_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tshz2|AY702102_chr2_169942032_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rspo3|Gm10275_chr10_29693012_F | TCGTCGGCAGCGTCTCCACTTCTTTTCCTGCGGT | 59.5 | 0.00 |
| mm4_intergenic_Rspo3|Gm10275_chr10_29693012_R | GTCTCGTGGGCTCGGACCGAGTCTTCAGAACAGTG | 57.1 | 0.00 |
| mm4_intergenic_Ppm1h/mmu-mir-8104|Ppm1h_chr10_122680838_F | TCGTCGGCAGCGTCTCAGGAGGAACGAAACAGCC | 59.9 | 0.00 |
| mm4_intergenic_Ppm1h/mmu-mir-8104|Ppm1h_chr10_122680838_R | GTCTCGTGGGCTCGGCTTGCAAAGGGTCCAATGGC | 60.0 | 0.00 |
| mm4_intergenic_Pitx1|H2afy_chr13_55841125_F | TCGTCGGCAGCGTCCATGTTGGCATGGTGTGTGC | 60.6 | 0.00 |
| mm4_intergenic_Pitx1|H2afy_chr13_55841125_R | GTCTCGTGGGCTCGGGGCCAGGCCCCACTTATATG | 60.2 | 0.00 |
| mm4_intergenic_Pax5|Mir5120_chr4_44591067_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pax5|Mir5120_chr4_44591067_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gpc5|Gpc6_chr14_116810187_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gpc5|Gpc6_chr14_116810187_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm6317|Gm25383_chr13_78545312_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm6317|Gm25383_chr13_78545312_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5257|mmu-mir-6343_chr1_76428771_F | TCGTCGGCAGCGTCCCCGAGTTTGGTTACTCCCA | 59.3 | 0.00 |
| mm4_intergenic_Gm5257|mmu-mir-6343_chr1_76428771_R | GTCTCGTGGGCTCGGACCTGGGAGAAGGAAGAAGGT | 60.1 | 0.00 |
| mm4_intergenic_Gm26905|Galntl6_chr8_58306470_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26905|Galntl6_chr8_58306470_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22008|Zcwpw2_chr9_118004123_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22008|Zcwpw2_chr9_118004123_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Acsbg1|Dnaja4_chr9_54679276_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Acsbg1|Dnaja4_chr9_54679276_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Tcf7_chr11_52253800_F | TCGTCGGCAGCGTCGCAGAGCGACCTGAGAATGT | 60.1 | 0.00 |
| mm4_exon_Tcf7_chr11_52253800_R | GTCTCGTGGGCTCGGCCGATGACAGTGCTCTAGGC | 60.2 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm3_exon_Srebf2_chr15_82203787 |
CGCCATCTTCCCCTCTCTTTCCTGTCTTCCCCGGGCCAGCGGGCAGTGCTGCTGGCTGAAGCTGCCCGCACCCTGGAGAA GGTGGGTGACCGCCGTTCCTGCAGTGACTGCCAGCAGATGA |
| mm4_intron_Poc1a_chr9_106337867 |
ACCAAGCCATGAAATTCTTGCAAATTCTTGCTCCAACTGGTTTTTTAATAGCAGGCAGTGCTTCAGGCCAGCCCCAGCCA TGCAGTGATGTCACA |
| mm4_intron_Dnah5_chr15_28400777 |
AGGTTGTTGACTTGCCCAGGCAACTAGGAGACTAGGTGACAGTGCTGCTGGACTTTGAATACAATACAATCCTTGTGAAT GACTCCACATCTCCCTTGTGCA |
| mm4_intron_Iqsec3_chr6_121448667 |
TGACACATGCCATGGCTGATACGAGCCTAAAGTCTGGAAAGCCTTCTCCTTTCCAGGTGTTGGCTAGTTGGCAGTGCTGC TGGGGTTCAGTCTTTATTGAACATTATGCTTTGGAGCCTCTTGGAGGCTGAGGTTTCCAC |
| mm3_intron_Lrrc1_chr9_77464368 |
ACAGGTCCAAGACAAGGCAGCAGCAGCACACTGCCCGACTGGGCCTCAGCCTTCCCAGGCCCTCAGCATTGCCTGCTAGT TCCCACTGGGGTCTTGTGCC |
| mm4_intergenic_Gm13982|Gm13985_chr2_117535948 |
GGCTGGGATGATGAGAAGCACAGAGAGAAAGGAGAAAGTTCACCCTAGTCAAATTCTTCTTCAAAGACTGGTGTCATAAA TAGCAGCCAGTGCTGCTGGGGTGACCTCTCCCTTTAGCTTCAGCATCTTGATGGAGGGAC |
| mm4_intergenic_Mc4r|Gnal_chr18_67082377 |
TCCAGCTGGGACACAAGTTTCTGTTGAAAACCTGAAAAGCAGGATCAATGGAAGACAGGTTGTACAAGGCATAGATGGAC CCACAGGCAGTGCTTCTGGGGGCACCAACAGCAGTGGAGCTTGCTAG |
| mm4_intron_Myt1l_chr12_29612535 |
TAGCTGAGAGTAGTGCGGGATTAGAAGTCTGTGAAAGGCAGGCAGTGCTGCAGGTTTCTATGAATAAATAAAGTAAGTTC TGTTCATGTAAATTGAATACTAACTTACTAATGTAAAGCAAGAAAAGATAAGGCAGAACT |
| mm4_intron_Bre_chr5_31918678 |
GCTACCGCCCCTACACAATTCACAGCAATTCAAAATTAAAGAAAGCCTTGCACCCGCAGCACTGCCTGGTTATCATGTAT CCAACTCCCCTAGCTCCAGGCCCTCAGTGCTCAGAGGTGCCTGTCTGTCTG |
| mm4_intergenic_RP23-394M5.2|RP23-394M5.1_chr8_87376185 | GTTGTTCTGGGACTGAGGGGATGGAGGATGGGCAGGCAATGCTGCAGGCTGCTGGCACCTATACTGCA |
| mm3_intergenic_Gm25200|Cdh13_chr8_118234000 |
TTCCACCTGCAGCAGACATCAGCGCCACTCCCTGCAGCACTCCCAGCTAGTCAATACAAACAGATGTGAAGTAAACAGAG AACTGGCAGGGAGGGTGTCTTGGTAGCCAGGAAGGTTTTCTGCA |
| mm4_intron_Ppm1h_chr10_122928850 |
AGTGGCAAAGTGGAGATGGGGGAGGAGCCCAGCAGGCAGTGCAGCTGGTTGCACCAGCCTGGGAATGCCATCAAACAAGG TGTGAGAGCCCAGTCATC |
| mm4_intron_Dnajc13_chr9_104204302 |
CGACACGTTATGCATGGCTGTGCTTCATCAGTTTGGAGTTCCACAGCTGTGCAGAGGGGACAGTCTTCCCTGCAGCACTG CCTGCCCGCCTCACAAAGGCTGCTTCAGCTCGTCCTTTGT |
| mm4_intron_Trabd2b_chr4_114504812 |
GGCCTCCTTGGTTGCTGAAAATAAACTGAGCCAGGCCCCCAGCAGTGCTGCCTGCTGGTCTGCTTGCCTGAAGAGGAACA GGGCTGTTTCTGCTTCAGAGGAGAGAGGCA |
| mm4_intergenic_Gm26416|Dap_chr15_31222589 | CCCTTACCCAGAAGTCAGCCAGCACTAGGAGGAAATGCTGCTGGGCTGAGAAACCTGGTATCTGGGCCC |
| mm4_intron_Morn5_chr2_36060717 |
CGTTTGCAGAAGTAAGGCTGTATGAAATATACTCTGGAGCATCCTGGAGCACCGCATGCTGGTCCCATCTTTCTACAGTT ATAGTAGAATGTAGGTGATTCCTTTGAAGCTTTTAAGGTTTGAGTTGTATTCCAGTGC |
| mm3_intergenic_Vmn2r-ps77|Vmn2r73_chr7_85840707 |
TGCCTTGCTCTCAGCTTTGAACTGTATTCAAATGATTGTCCTGCAGCACTGCCTGCTAAGGCAATAATTGCTCTGAGTTC TGTTTTCCTCTGCTGGCTGG |
| mm4_intergenic_Zfp799|Zfp870_chr17_32877596 |
TGCAACACCCAAAGCTCAGATAAGGAAAGGCCCGAAGCTCTGCCTGCTGGCCCAGCTCCTTCTAGCAGGATGCCAGAAGC AGCAGGGGCCAGCGGGGACAGACCAGACTCAGCGGCAAGCAGTATCAGCGGTA |
| mm4_intron_Prlr_chr15_10267418 |
ACGTTTGGCATTTCACATCTGTCTTGTGCTTTTGTGACATGTGGATTAGCAGACAGTGCCTCGGGCTCTCATGATGAATG TAGGGTAATACAGCAGCCCAGAGCCATGGCACCTAAGT |
| mm4_intergenic_Zfp957|Rgcc_chr14_79248667 |
CTTCCCATCTTGGCTCAGGGAAAACCCAGCTGCCCCTCAGCACTGCCTGCTCTTTCCCAGGGAAGGCTCTACAGAGCCTG CAGCTCTCTAGCTGCTTGCTGCATTGAAGGAAAACAAATAGAGACGTCCCTGCTGTTGAA |
| mm4_intron_Urb1_chr16_90798565 |
TCCGAGTTGGCTTGGTTCTGCCGGGTCCAGCTGCTCTGCCTGATGGTCCTGCTGCTTTTCTCTACTCACCCCCGTCCCTG CAACACTGACCTCAGTGGGTATGGGGACACCTAGTGCTCCGTCTG |
| mm4_exon_Gramd1b/1700110K17Rik_chr9_40333639 |
GTCTCCGTCCTGGTTCTGTGGTGTTGGTGAGCGGGACCGCTTCCGGAGGATGGGAGAGCAGGCTGGCGTGCTGCGGTTGG AGTTACTGGCAGTGCTGCAGGGGCAGATGGAGACGGGGAATGAGATGG |
| mm4_intergenic_Gm22024|Gm26721_chr8_83875456 |
CAAACACCACTCCTCCCCTCCTCCGCCTGCGAGACGGCTGCGGCCCCGCCTAGGGAGAGGGGGGACCAGAAGGAAGTGCT CCTGGAGGGAAGTGTGGCGGGATGAAGGGAGAAGGGGCAG |
| mm4_exon_Mtus2_chr5_148076955 |
AGCTGAAGAGAGCAAGCAGCTGCTCAGCTGCAGCTGGCAGCGTCCCTCCCACGGACCTGCAGCCAGTGCAGCTGGATACC TTGGGGCCGCAGGACCATGTGCCTGCGCGTGGGGAGGGGCCACAAAGGACACCAGCCAGT |
| mm4_exon_Gm6498_chr14_48227968 |
AGCTCACTGGCATCACCTTCCATGTTTCTACCCCCAATATGTCTACTGTGGATCTGACACGCTGCCTGGAGAAACCTGCC AAGTATGATGACTAGAAGGCAGTGAAGCAGGCATCTGAGGGCCCACTGAAG |
| mm4_intergenic_Gm26455|Gm15754_chr5_118478392 |
ACAGGAAACGCAGGAAACCAAAAACCTTTTCAAATAACTTGCCTGCAGCACTGCAGGCTGGGCCATTGTGACGTCAGGCC AGCAATCAGCCAATGCATGGGTGGTTCCGCCTTCCTAAT |
| mm4_intron_Casz1_chr4_148941137 |
GTGATCTCGTCAGCCGGAAGAGCCGCTGACCAGCAGCCAGTGCTCCTGGGGCCCCCTGCCTGTTCGGCCCACTGCCCGCC CTTTGGGTGTAAAGGAACGAGGGTACTAGATTTTGTGCCCGTGTTAAACCTGAGCCCCT |
| mm3_intergenic_4933412E24Rik|Gm25875_chr15_60025666 |
GCGCAGAGCTAAGGAGGAAACCTTGTGGAGACTCGCAGGCAGTGTTGCTGGTGCTTGTCTTTATTCTGGGAAGATGAGTG GTGTGGAGGGTTTCAGGCAAGCAGTACTCACTTTGCTAACTGAGGGAATGTGTTGGGCT |
| mm4_intron_Arhgap12_chr18_6035685 |
TCGCTTGCTTCATTCTCTGTTTCTAGACCTCAAATACAAAACAAAACTCCTGCAGCACTGCCCTGTAGTACCTTCCCTAG GCTAGTCCTTCCTAATGCTTTTGGAGTATGTTACACCTCCTCATCACCACAG |
| mm4_intron_Asap1_chr15_64113202 |
CTTGGCATGACAGACCCCATAGAATAGGAGGCACGGATCTGGGACAAAGCAGGTTTAGAAACAGCAGACACTTGCTCCAG CAGTCAGTGCTGCTGGCTCCTGAGATGCAGGGCAGCATTTTCAGCC |
| mm4_intergenic_Stac|Arpp21_chr9_111719405 |
GTAGCGTGGCTGTCTGAGTTGTGCTTGACCACGTGTGGCAGGCAGTGCTGCTGGGTGACTGTGCGTGGCAGGCAGTGCTG CTGGGTGACTG |
| mm4_intergenic_Gm24965|Manea_chr4_25996847 |
AGCAAGGGATTTGGGGTGAGTGTCACCTTGTTGTCCCAGAGCAGGTAGCTCCCTGGAAAGGCAGGCAGAGCTGCGGGCCA GAAAATGGAGTACAGGGCATAGGACATGCTTCATGGCTCC |
| mm4_intergenic_Pten|Gm22482_chr19_32859966 |
TGCCCATTACACCAACAGCAGTGCCCATTATACCAACAGCACTGCCTGTTAAACCAACAGCAGTGCCTGTTATACCAACA GCAGTGCCCATT |
| mm4_intergenic_Pten|Gm22482_chr19_32859882 |
GCTGCCAATTTCACCACCAGTGCTACCTGTTACACCAACAGCAGTGCCCATTACACCAACAGCAGTGCCCATTATACCAA CAGCACTGCCTGTTAAACCAACAGCAGTGCCTGTTATACCAACAGCAGTGCCCATT |
| mm4_intergenic_Cd99l2|Gm8421_chrX_71494187 |
GGGGTGATGGAGTGGTAGGATGGACTATAGTGAGGACTCTAAGAAACTGAGCTATCACAGTGGAGGTACTGGCAGGCAAT GATGCAGGACCTAACTTCTATGCTTCTCTACAAGTTAAGCATAAAAGATGACCTGCCT |
| mm4_intergenic_Ctps|Gm8439_chr4_120582434 |
CAGAGGCAGAGTGTGGGAAGAGGAGTTCCTCACGTGGCAGAGGAAGGACACGTTGGAGCTGCTGCCACATACCAGCAGCA CTCTCTGCCACTCCGTCTCTGTCCTCACATCTGCCTGTCTTCCAGCCAGACACACC |
| mm4_intergenic_Stac|Arpp21_chr9_111719465 |
TGAGTTGTGCTTGACCACGTGTGGCAGGCAGTGCTGCTGGGTGACTGTGCGTGGCAGGCAGTGCTGCTGGGTGACTGTGC GTGGCAGGCAGTGCTGCTGGGTGACTGTGCGTGGCAGGCAGTGCTGTCAGGTCTGCTCTC |
| mm3_exon_Qprt_chr7_127108452 |
TACCTTCAGGGAAAACCCGGCTGCCTGCCGAGCCTTCAGCACTGCCTGCCAGGCCAATAGAGAGAGGATAAGGTTGAGTA GCCTGGCCCTGGATCCTGGGGGGCCCAGAGAGCTGTGCTTTGA |
| mm4_intergenic_Rbms3|Gm26614_chr9_117671348 |
TCTGTTGTGGGCTTCAGTCCCTTGATAGATTTTCATGCTTAAATGGCATATTGGATAGTCCCAGCAACACTGCCTGGTAC TCTAATTTTGGAGAAACAACAAATGAGAGAACT |
| mm4_exon_Tmem26_chr10_68779660 |
CGGGACCGTTGACATCTGAATACCTGATTACCTTTTTCTAAGTTGTCAAGGTGCATCATGGGATCAATTTCAAAGAGCAC TAGCATGCAGTGATGAAGGAATTTGAGGCCCTTTAGTGTTACCATGGTTTCTGGTAGGGG |
| mm4_intergenic_4930428N03Rik|Gm10398_chr14_24792282 |
AAGACACTAGAAGAGATGCTTGTAGTCCCCACAGCAGTGTCTGCTGGTCCTGCAACATCTTCCTTTTTGTACAGAACCTT TACACTTGATGTACCAGCACTGTTCATTTGTCTGTCTGTCCCCGG |
| mm4_intergenic_Cep120|Csnk1g3_chr18_53744718 |
ATAGAACGTCCATCAGCCGCCTTCACCTCCCGCCCTTTGACGCTCTTTCCAAGAGCCCCGGGGAGACGCGGCTGCATTAG CCCGCAGCGCCGCCTGCTGGTCGCAAGCGGAAAGGCAGGAGACTTGAACCACCA |
| mm4_intergenic_Nkx1-1|Fam53a_chr5_33545899 |
TGGTGACAGGAGAAGCCATGGCTAAGACGGACTTCCCGGGAGTGCTGCTGGAACCCCACCTGTGATTCAGAGAGGCTAGG ATACTCTTTGTCCATTACACAAGTGGGAGCAAGTCTGC |
| mm4_intron_Gm15800_chr5_121331149 |
TCTCAGTGGGAAGAGTGGGAAGAGTGTCCCAGGCGCAGAGAGAGGAGCAGCATGCAGTGCTGTTGGGTAGAGCACAGCCA CTGGCCCGTGCGGTGCTGCAGCCTTGTAAGTCA |
| mm3_intron_Agap1_chr1_89791486 |
TCCAGGCAAAGCACAAGTGTATGTAAAATAAAAAATAAATCCTTTAAAAGAAATGTTTTCTGTTGACATCTCTGTCCCAC AGCACTGACTGCTGGTCCCCTCGGGCGGTCTTCTGCTCATGGCCTC |
| mm4_intergenic_Gm5742|Gm22223_chr8_100728985 |
TCAAGTAGCTACAGTCTTGCAATCCCAGGAGCACTGACTGCCAATCCCCTTCCCCTCTGAAGTAGGAGAAGATAGCTTTC TGCCCAGCAAAATGGC |
| mm4_intron_Adamts2_chr11_50631922 |
GGTTCCAGTGTGACAGAGGGCTCCTAGATACAGAGTCCCTGGGCCAGTGTGACAGAGGGCTCCTAGATACAGAGTGCCTG GGCTCCCAGGCAGTGCTGAAGGGCCAACTGTGTGTCCCTTTTGGCTCTTGGTTGGC |
| mm4_intergenic_Gm831|Gm12962_chr4_131608254 |
GCACCAGAGCACCTAAGAGGGAGAAGTGTGGAGGAGCAGGGAGTGCAGCAGGATTGACAGGACCCCTGATATCCGTCCTG CAGCCTGGCAGGCACAGCTGGGGAAGGTGCCAAGGAGAAGCT |
| mm4_exon_Cd5_chr19_10738821 |
CACAGGTATTCAGCCTGGCAGTACCCAGTACCGGCAGAGACTCACCCAGCGTTCCCAGCAGGTATGTGGCAGCCAGCAGC ACTTCGTGGGAGTCCATGGATAATGGCCTTCTGCTGCCTCAGCCTCAGTGAGCTCAG |
| mm4_intergenic_Gm25748|Creb1_chr1_64448825 |
CCAGGACAGTGCACAGCTTAGACCTGAGGACCAGCACTCAGAGCTGCCGGGCTAGTCCACAGAAGGCAACCTGTGTGGGA ACTGTGGAGAGG |
| mm4_exon_Aqp12_chr1_93006938 |
TTCCATCTGAGCCTCCTCCACCTGCAGCACAGCCTTCTTGTCTACAGGGTGCCTGCCCTGGCCCTGCTGGTCACTCTCAT GGCCTACACAGGTAAACTTGCTCCCCTCTCTGC |
| mm4_intergenic_Gm22218|Zmym2_chr14_56887291 |
TTGGCTGGGTCTCTAATGGCGGACGGGGAGGCAGCGCTGCCGGTCTCGGACTGCAGGGGGGGCAAACCTCGGGCCCAGGG CAACTGCTTGGGGCAAATATGGGCAA |
| mm4_exon_Gm17435_chr8_72504789 |
CAAAGCACTTTGGAGGCACCACACAAGGACAGCTCCCTGTCACCTAGTGGAAACAAGATGCATTAACTGGGGACAGGCAG GCAGTGCTCAGGGACCAAGCACCATGAGCTCCAGCATGAC |
| mm2_intergenic_Ift81|P2rx7_chr5_122642416 |
GGCCTCCCGAGTAAACAGAGAGGGTTGGGAGACGCATCTAGCATCACTGCCTTCTAGTCCCTTGAACTGGAGCCAACAGG G |
| mm4_intergenic_n-R5s42|Fam19a5_chr15_87622687 |
CAGTTCACCTGCTCCTCTGGGTGCCAGACTCAGGTTCTTGGCATTTTACCTGTAGTTTCTGTAAAGGGCACCAGCATCAC TGACTGCCAGCCCAGTAGGAGGGCTTAGCACCT |
| mm4_intron_Arhgef28_chr13_98110495 |
ATGTTGGCTGTCAGATCGCAAGCCAGAGCTCCAGCCGCACTGACTGCCAGTTCCTCTCTTCTCTGCCCAAGCTCTTCTGT G |
| mm3_intergenic_Fer|Pja2_chr17_64186777 |
CTGTAGCCGTGGCAAGAAGACATGGCTGCAAGTCTCTATACTGGCACCAGCAGCCAGTGCTGCCAGCTGGGTAATGGGCA GAAGCTG |
| mm4_intergenic_Lgals2|Gm26634_chr15_78862670 |
CATGGGTCTCTGCTGTGGTTTGAGCAAGCCCCTAAACAGGTCCTACACAGGCAATTGACTCTACAGATGCTGGGGTTAGC AGGCAGTGAGGCTGGCTTGAAAGTGTGACCTCACAGGGTGGAATCTGC |
| mm3_intergenic_Eci2|Gm22674_chr13_35289006 |
GCAAGGGGTACAGGAAATGCAGACTGGTCTAATAAAGCCATTACTTTCCCATGGAGAAGCAGGCTGTGCTGCAGGCTCAT CCAGTGGGCACAGGTCTACAGGTCCTTTTGCAGCTTTGGTCCC |
| mm4_exon_Cstf1_chr2_172380443 |
ACAGGCAGTGTTCAACCACACTGAGGACTATATTTTGCTGCCGGACGAAAGGACCATCAGCCTGTGCTGCTGGGACTCCA GGACAGCTGAGCGCAGGAACCTGCTGTCCCTGGGCCACAACAACATCGTGCGCTGCATAG |
| mm2_exon_Upk2_chr9_44452796 |
ACGTGGGTCAGCCTTTATTGTGAGAATTAAGTACAGTTAAGAGATAAATCAGTGTTGGCAGGATTGCAGTGGGGCTAGCA GGGAGTGCTGCAAGGTGAGACAGGGAGCAGGGAGGGGGCACTGTCAGGAGTGGACTC |
| mm4_exon_Nsun3_chr16_62779812 |
AAGTTCCAGGACAAAGGCGGCGGCAGCAGCACATGCATGCGACGAGGAGAAGCTGGCAGTGATGCTGGCTCTTGCTGGAT GATGTGGCT |
| mm4_intron_Prdm1_chr10_44486068 |
ATGAAGCCTTCAGCCTTTGCTCAGCTAGTTAACATAGAACTAGCAGACATTGCTGTAGGCAGATGATCGATGAGCCAAAG ATAGCCCCCAATAAAAACAAGACCAAGCCCGTGA |
| mm4_intron_Eefsec_chr6_88277444 |
GCAGACAGATGGGGACTGAGTAGGTGTATCCTCAGTGGAGAATCTGGGGTTGGAGCAGCAGCCTGTGCTGCAGGCAGCCG TGCCAAGGATGGAAGAGCT |
| mm4_exon_Unc93b1_chr19_3948626 |
AGGAGTGTGGTGTCTCTCCTTTTCCTTGCTCCCAGGCCAAGCTGGCAGTGTTGCTGGTGACCCTGGTAGCAGCAGCAGCC TCATA |
| mm4_intron_Bmpr1b_chr3_141931763 |
TTTGACCTAGACGCCCACACAGGGCCAGTGTACCATAGGCTCCACCCTGCCTCCGCAGCACCCAAGTCTCCTGTCTCCCA GCAGCACAGCCTGAGAGACCATACCAGCGGTTTGCTGTCAGAAAACA |
| mm4_intron_Plekho2_chr9_65561250 |
AGTACAGTGCACTTGGCCTGGCCCCCTTAGCATCCTCATTATATAACTTCCTCCTGGCAGCACTGCCTCCTCCTCATACA GGACCCTAGGTCCCCCTCCATGCCAGCCACAGCCAAATGCTCATTTGCATGACCAGGC |
| mm4_intergenic_Mrpl28|Axin1_chr17_26131141 |
TCTGAAGGGACACTGGCATGGGGCCACTGGCAGCACTGCCTGCTCCCTCCGCAAATAGGAGTGGCTTGGGGGGTGGCGGT GTCTAAAGGGGCTGGTTGC |
| mm4_intron_Tfdp1_chr8_13368317 |
CCTTCATGCTGGTGTGGGATGTGTCAACGTGACTGGCAGGCAGTACTGGTGGGGGACGTAAAGCTCTTACTGTCTGGGGA TGGGGAG |
| mm4_exon_Foxb2_chr19_16872793 |
GACAACATTGCTGAGCTGGCCCGGCACGGGGTAGCCCAAGTGGTGCATGACCGACGCCAAAGGCAACCCTCCAGCCTGCA GCACGCCCTTGTAGTCCCGCCCGATGATGTTCTCTATGGCGAACGGATGTTTGAAGC |
| mm4_intergenic_Sfrp1|Zmat4_chr8_23535506 |
ACCACACATCTCAGCAGTGGGAGAGCACAGGGGCAGTTTGCCTCCAGCACTGTCTGCTAGACTTTTTGCTCTTAGCTATT TCAAAGCTGAGATCATCTCATTCCTGGGTCTCAAGAGGACA |
| mm4_intron_Gpc6_chr14_117030268 |
CGGTGCATTAGAGTTAAGTACAAGGATTTAGAAACCAGACAAATAAATGTTGGACTAGCAGTCAGTGTAGTCGGAGTGCT GCCAAGGGAGAGATA |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45865590 |
CCCCTCCCTCAGGTTTCAAATGCCTATCATCTTCTATCCCAGGCTATGTCTGACTAACAGGAAGGGCTGCTGGGGTCCAG TTTACCCATGAAATACAGGTTAGTCCAAGCTGAAGAAGCAAGCAGTTGGAGGAGTC |
| mm4_exon_RP23-199B2.4/5830417I10Rik_chr3_88820488 |
CAGACACTTCCAGGGTTCCCTTCAGTGGGGGTTCGTGGAGAAGATGGTTTTGAGTCTCCAACATCACTGCCTGCTACGCC TTGTGGGTCTGAAGCCAGGACCAGCTTCCCCTTGTCTGAG |
| mm4_exon_5830417I10Rik_chr3_88816450 |
CAGACACTTCCAGGGTTCCCTTCAGTGGGGGTTCGTGGAGAAGATGGTTTTGAGTCTCCAACATCACTGCCTGCTACGCC TTGTGGGTCTGAAGCCAGGACCAGCTTCCCCTTGTCTGAG |
| mm4_intergenic_Gm6205|Gm3183_chr5_94771647 |
ACCAGGGATAGGCTCATTCTAGAGGCTACTTATAGAAGCTGTAATCCACTGACAACTGTCCTTAGTCCAAGAAGACGATA ACTTCAAGGTTCCTGCACCACTGCCTGATGATCCCATCAGAAGCCATTCTCCCTGACCC |
| mm4_intergenic_Gm3259|D5Ertd577e_chr5_95419359 |
ACCAGGGATAGGCTCATTCTAGAGGCTACTTATAGAAGCTGTAATCCACTGACAACTGTCCTTAGTCCAAGAAGACGATA ACTTCAAGGTTCCTGCACCACTGCCTGATGATCCCATCAGAAGCCATTCTCCCTGACCC |
| mm4_intergenic_GM6367|AC123873.1_chr5_JH584299_random_83953 |
AGTCCACTGACAACTGTCCTTAGTCCAAGAAGACGATAACTTCAAGGTTCCTGCACCACTGCCTGATGATCCCATCAGAA GCCATTCTCCCTGACCCCACAATCTCTGCTGTG |
| mm4_intergenic_C87414|AC140365.1_chr5_JH584299_random_711247 |
ACCAGGGATAGGCTCATTCTAGAGGCTACTTATAGAAGCTGTAATCCACTGACAACTGTCCTTAGTCCAAGAAGACGATA ACTTCAAGGTTCCTGCACCACTGCCTGATGATCCCATCAGAAGCCATTCTCCCTGACCC |
| mm4_intergenic_AC126035.1|Gm16367_chr5_JH584299_random_390428 |
ACCAGGGATAGGCTCATTCTAGAGGCTACTTATAGAAGCTGTAATCCACTGACAACTGTCCTTAGTCCAAGAAGACGATA ACTTCAAGGTTCCTGCACCACTGCCTGATGATCCCATCAGAAGCCATTCTCCCTGACCC |
| mm3_intron_Spon1_chr7_113979678 |
TAGAGCATCCTTCCCTGGGTCGCTCATCAGCATGTATCCTCACTAGGGTAGGAGAAGCTCTCTGCAGCACTGCATTCTAG ACCAGAGTGCCTACTGGAGAGCTATTGCTATTCATCCTTTCCTCCCAAAGTCCTCCCCTA |
| mm4_intergenic_Vmn1r79|Vmn1r80_chr7_12183040 |
TGTTCACTTGTATGCCACAGCTTGGAGGACTAATTTGGATGATGAAAAGGGCCTCCCCCTGCACTGCCTGATAGTCAGAT ACAACTTGATGGTGATGTTCCTTTGAAAACCAACATCACTGGCATCGT |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_83993547 |
AGAAGCCAATGAGGAGCCACGGTGTGCCTGGGAGCACTGGGAGGCAGTGCTGGAGGGACCAGTGCTGGGGAAGGGAGGTA TTG |
| mm4_intergenic_Gm14988|Il1rapl2_chrX_137650462 |
CCTGGTGAGGTTTATGCCCTTCAAATACAAATCCATTATAAAAGAATAAATCTTTAAACAGTATTCAGCATCATTAAATA TTACCCAGCAGCCCTTCCTGCTTTTCCACCTAGGTTTTCTTCCATTCGT |
| mm4_intron_Arhgap24_chr5_102846900 | AAGTTAGGGCAGCTGCTGAGTGGAATAGCATCCAGGGCTGCTGGATGTCTTCTGGGTCGGCTGTC |
| mm4_intergenic_Gm3848|Ptprg_chr14_12036495 |
CCGTATGACCATCCTGCCAAGTAGAAACGCTTGACTCTACGTCGCGAAGCTGCTGGAGAAAATCATCCGCTCCCTGAGGG CCGCCTAGACAAGGAGGCAGGGCTGCTGGAGTAATAATATATGCAGGCTCAGGAGGCT |
| mm4_intergenic_Chic1|Tsx_chrX_103414078 |
CTGGCCCATTTCCTCACCTCTAGGTCTCACCTCCCATCTACTGGTTCCCAACCACTGTCCCCTTCCTACACCACTGCCTG CTGATCCCACCCACCCTCCTATTCTATACAAGTGCTGGAAACTGGAAGGG |
| mm4_intron_Tenm4_chr7_96699383 |
CCCAGGTTGGCATGCTATCAGAAGCACTTCCAGGAGATCCATCACTGTGTAGCTTGAGAAATCCTTCATCCTGCTCCACT GCCTGCCTGTCCTCTTGTCCTCTGGCTCTGGGCTTTTAAGGG |
| mm4_intron_Pomp_chr5_147869862 |
ACTGCTTCAGGGAACAGCTCCCTGCCAGCAGCCCTGCCTGCTGGGACACCTTTTTCTTCTCTCCTTGCTTCAGCTCATCA GAAGCAGTCACA |
| mm4_intron_Cenpe_chr3_135244496 |
TTCTTTGAAAACACCTTCCCACCCCGCCCCACTGCCTGCCATTCCTCGAGATAGGGAGCTCTGATCTGAGCACTGAGGCA GGGTTTGTCAG |
| mm4_exon_Spred3_chr7_29161937 |
GAGGCTTTGGCTGGAGCAGGGGTGGGGCCTGGACCTGGGGGTGGACGAGCAGGGGGTGCTGGGGGTGCAGCCTCTGTGAG AGGGGCAGGGAGTGACACTGGAGGA |
| mm4_intron_Ptk2_chr15_73223137 |
GCTTCTCATCAGACTGCAGCTCCAGCAGCCCTGGCTGCTAGCACTCTGGCAAAGGAGTCCAGTAGCAATTACAGTAGGGA TTCACATGCACAGGG |
| mm4_intron_Incenp_chr19_9894807 |
GCTTCCAAGGCTCCAGACATCCTCCAGCACAGCCTCCCAGTCCTTTCCTACCTTTTCCTCACGGGATCTCTGTTTTCATC CTGAATGTTAGACACCCGCCTCTTCTTCCGACGGTTT |
| mm4_intergenic_4933428C19Rik|Gm12391_chr4_40582760 |
ATGTCCAACACGTCGCTTCAGCTGCAACCCTGCAACCCTGCCAGATAGTCCTTCATTTCTACAGCTCAGGGACCATGTTG |
| mm4_intron_St6gal1_chr16_23326658 |
TGGTACCTGGGAGTTGACGATTTGGATTATGTGAGTTTGTAGGAAGAGTGCCCTGCAGCCCTGGGTGCTAGTCTGATTTC CTCAAACTCATCCATGTACCCAGCACTCTCATGGTTC |
| mm4_intron_Grin2a_chr16_9596747 |
ACTTTGCCTCAACTGTAGGCAGTAAGTCACAGGAGGAGTGGCAGGCATTGCTGGTGGAAGTGTGAATGGTTGCATATGGA CAGAAACCTTGCAGGATGGATCTACCAGCACTTACTCTATGCACAGGATGACCATCGT |
| mm4_intron_Defa-ps13_chr8_19304389 |
GAAAAGCAAAGGCAGGGCTGCTGAGAAGCAGTTAGGGACTCACAGAGAATCTTTCCTGCCCTCCTGCCTGCTAGTCCTGA AAACTCCAATCAGTCATGGGTGGAGCATTTGAGTCC |
| mm4_intron_Sorcs3_chr19_48671410 |
TTAGTCCTGCCATCCTGGGGCGGGGTGGGTGCTAGCAGGCAGACCTGCTGGGTTTAAAAGCCAGAGCTCAGGAGTGGCAT GGAGCGGCCAGAGCTCTGAGACACAG |
| mm4_intron_Col18a1_chr10_77152775 |
GCCTTCTGCAGTTTGACTCCTTGGCAAAGCAGGCAGTTCTGCAGGGAACCAGGAAGATGGCAGGACAACAGCAGACCCAC TAAAATCTGCTCTGACATACAGCGTACGCATGGGTGAGACATGAG |
| mm4_intron_Afg3l1_chr8_123499902 |
GAGGGAAGCCTGTCTGACACGGGAGCGGTTCCTGACTGGCCTGGGACTGGGGTCTGGCAGGCAGTCCAGCTGGGTGCCGA GGGGGTTTGGGAGTGGACGTTCTGCCCTTGTTT |
| mm4_intergenic_Rspo3|Gm10275_chr10_29693012 | TCCACTTCTTTTCCTGCGGTGAACTAGCACCCAGTTCTGCAGGCACTGTTCTGAAGACTCGGT |
| mm4_intergenic_Ppm1h/mmu-mir-8104|Ppm1h_chr10_122680838 |
TCAGGAGGAACGAAACAGCCTGTAACCTCCAAGAGGAAGCAGAAACCTAAAGGCCGGGAGAAGTGCCTGCTAGTTCATGC CACCCATTCCTTGACTGAAAAATAAGTTCAAAGGCCATTGGACCCTTTGCAAG |
| mm4_intergenic_Pitx1|H2afy_chr13_55841125 |
CATGTTGGCATGGTGTGTGCTCGCCTAGCAGGCAGTTCTGATGGGTGAGGTGCCCTGGGGGTCTTGGTGAGGAGCCCACA TGCCTAGCTCGGGACTCAGCATCATATAAGTGGGGCCTGGCC |
| mm4_intergenic_Gm5257|mmu-mir-6343_chr1_76428771 |
CCCGAGTTTGGTTACTCCCACTAGGTAGGATGATCTGCTGACATACCAGCAGCATGTACACATGAAGTTCTGCAGAGCCC TAGCAGGCAGACCTGCTGGGTGATTGTGATAGCTCTCACCTTCTTCCTTCTCCCAGGT |
| mm4_exon_Tcf7_chr11_52253800 |
GCAGAGCGACCTGAGAATGTTGGTGCTGGCTCCACTGGGCTAGCAAGCAGTTCTGTGGGGAAGGAGGGCAACAGAAGATA CGAGGGTGAGTCCTGGGGAGCTGGGGACCGGGGACAGCCTAGAGCACTGTCATCGG |