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Contents:

PCR primers for off-targets of CAGGAGGAGGAGCCGGTCGA TGG

In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.

In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.

If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.

Maximum amplicon length:     Primer Tm:

NamePrimer Sequence Tm CFD Score
ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314036_F Primer3: not found at this Tm N.d. 1.00
ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314036_R Primer3: not found at this Tm N.d. 1.00
mm3_intergenic_Gm14136|Gm26681/Entpd6_chr2_150738084_F Primer3: not found at this Tm N.d. 0.68
mm3_intergenic_Gm14136|Gm26681/Entpd6_chr2_150738084_R Primer3: not found at this Tm N.d. 0.68
mm3_intron_Mybpc1_chr10_88591779_F Primer3: not found at this Tm N.d. 0.60
mm3_intron_Mybpc1_chr10_88591779_R Primer3: not found at this Tm N.d. 0.60
mm3_intergenic_Pmis2|2200002J24Rik_chr7_30676923_F Primer3: not found at this Tm N.d. 0.48
mm3_intergenic_Pmis2|2200002J24Rik_chr7_30676923_R Primer3: not found at this Tm N.d. 0.48
mm4_intron_Rgs3_chr4_62565172_F Primer3: not found at this Tm N.d. 0.47
mm4_intron_Rgs3_chr4_62565172_R Primer3: not found at this Tm N.d. 0.47
mm4_intergenic_Gm9991|Col6a3_chr1_90745318_F Primer3: not found at this Tm N.d. 0.44
mm4_intergenic_Gm9991|Col6a3_chr1_90745318_R Primer3: not found at this Tm N.d. 0.44
mm4_exon_Ube2m_chr7_13037673_F Primer3: not found at this Tm N.d. 0.37
mm4_exon_Ube2m_chr7_13037673_R Primer3: not found at this Tm N.d. 0.37
mm4_intergenic_Sspn|Itpr2_chr6_146082966_F TCGTCGGCAGCGTCGAACAGACCCCAAGGCCC 59.9 0.32
mm4_intergenic_Sspn|Itpr2_chr6_146082966_R GTCTCGTGGGCTCGGCTGACCTCTTGTGGCCTCAG 60.0 0.32
mm4_intron_Notch2_chr3_98048256_F TCGTCGGCAGCGTCTGCGAGACTATGGAGCAAGA 58.5 0.31
mm4_intron_Notch2_chr3_98048256_R GTCTCGTGGGCTCGGAAGTTTCCAGGTCCGATCCC 59.3 0.31
mm4_intergenic_Enpp2|Gm26684_chr15_54920178_F Primer3: not found at this Tm N.d. 0.26
mm4_intergenic_Enpp2|Gm26684_chr15_54920178_R Primer3: not found at this Tm N.d. 0.26
mm4_intron_Pla2g6_chr15_79304981_F TCGTCGGCAGCGTCAAGCTGTCCCTTTCGACATC 57.8 0.25
mm4_intron_Pla2g6_chr15_79304981_R GTCTCGTGGGCTCGGGACATAGAGGTCCTGGCAGC 59.8 0.25
mm4_intergenic_Ddit4|Anapc16_chr10_59956899_F TCGTCGGCAGCGTCACAGCATCCCTAGGCAACG 59.7 0.24
mm4_intergenic_Ddit4|Anapc16_chr10_59956899_R GTCTCGTGGGCTCGGTCCAGTTCCAACATAAAGAAAGAAA 57.1 0.24
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16164049_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16164049_R Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16164001_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16164001_R Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16163730_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16163730_R Primer3: not found at this Tm N.d. 0.24
mm4_intron_Dcaf13_chr15_39139434_F Primer3: not found at this Tm N.d. 0.23
mm4_intron_Dcaf13_chr15_39139434_R Primer3: not found at this Tm N.d. 0.23
mm4_intron_Lrch1_chr14_74869892_F Primer3: not found at this Tm N.d. 0.23
mm4_intron_Lrch1_chr14_74869892_R Primer3: not found at this Tm N.d. 0.23
mm4_intergenic_Gm26150|6430573F11Rik_chr8_36416681_F Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm26150|6430573F11Rik_chr8_36416681_R Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm6027|Gm4746_chrX_90326944_F Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm6027|Gm4746_chrX_90326944_R Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_2310005G13Rik|Tomm70a_chr16_57117705_F Primer3: not found at this Tm N.d. 0.21
mm4_intergenic_2310005G13Rik|Tomm70a_chr16_57117705_R Primer3: not found at this Tm N.d. 0.21
mm4_intron_Ggt7_chr2_155496760_F Primer3: not found at this Tm N.d. 0.19
mm4_intron_Ggt7_chr2_155496760_R Primer3: not found at this Tm N.d. 0.19
mm4_intron_Nav2_chr7_49213105_F TCGTCGGCAGCGTCGGATGGATCCTGCTCAGCTC 59.9 0.19
mm4_intron_Nav2_chr7_49213105_R GTCTCGTGGGCTCGGACACTGCTCAGGACAGAAGC 59.9 0.19
mm4_intron_Bbs9_chr9_22837510_F Primer3: not found at this Tm N.d. 0.18
mm4_intron_Bbs9_chr9_22837510_R Primer3: not found at this Tm N.d. 0.18
mm4_intron_Hdac5_chr11_102219076_F Primer3: not found at this Tm N.d. 0.17
mm4_intron_Hdac5_chr11_102219076_R Primer3: not found at this Tm N.d. 0.17
mm4_exon_Sh3bgr_chr16_96214062_F Primer3: not found at this Tm N.d. 0.16
mm4_exon_Sh3bgr_chr16_96214062_R Primer3: not found at this Tm N.d. 0.16
mm4_intron_Fn1_chr1_71639137_F Primer3: not found at this Tm N.d. 0.16
mm4_intron_Fn1_chr1_71639137_R Primer3: not found at this Tm N.d. 0.16
mm4_exon_4732463B04Rik_chr12_84041346_F Primer3: not found at this Tm N.d. 0.15
mm4_exon_4732463B04Rik_chr12_84041346_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Gm23075|Gm22853_chr19_35463747_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Gm23075|Gm22853_chr19_35463747_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Kcnk10_chr12_98452728_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Kcnk10_chr12_98452728_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Sec24d_chr3_123305734_F TCGTCGGCAGCGTCAGGATGGATTGTTTAGATGTACCT 57.1 0.13
mm4_intron_Sec24d_chr3_123305734_R GTCTCGTGGGCTCGGGCCTGGGTCATTCAAGGTCA 59.9 0.13
mm4_intergenic_Gm13028|4933427I22Rik_chr4_139935946_F TCGTCGGCAGCGTCGCTCACCATTTGCCAGAAGC 60.1 0.13
mm4_intergenic_Gm13028|4933427I22Rik_chr4_139935946_R GTCTCGTGGGCTCGGCTTCCAGTGCCGTCTTCTGT 59.9 0.13
mm4_intron_Myo1h_chr5_114350858_F Primer3: not found at this Tm N.d. 0.12
mm4_intron_Myo1h_chr5_114350858_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Plekha2|Tacc1/mmu-mir-8108_chr8_25137855_F TCGTCGGCAGCGTCTCCCCTCCTACCACCATCTC 59.7 0.12
mm4_intergenic_Plekha2|Tacc1/mmu-mir-8108_chr8_25137855_R GTCTCGTGGGCTCGGTTTGGCTCCAGGAAGCAGAG 59.9 0.12
mm4_intergenic_RP24-86O15.2|Gm10698_chr9_33648774_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_RP24-86O15.2|Gm10698_chr9_33648774_R Primer3: not found at this Tm N.d. 0.11
mm3_intron_Adam28_chr14_68632382_F Primer3: not found at this Tm N.d. 0.11
mm3_intron_Adam28_chr14_68632382_R Primer3: not found at this Tm N.d. 0.11
mm4_exon_B4galnt4_chr7_141068540_F Primer3: not found at this Tm N.d. 0.11
mm4_exon_B4galnt4_chr7_141068540_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm23225|Gm24127_chr14_91619117_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm23225|Gm24127_chr14_91619117_R Primer3: not found at this Tm N.d. 0.10
mm3_intergenic_Gm25369|Akap12_chr10_4214717_F Primer3: not found at this Tm N.d. 0.09
mm3_intergenic_Gm25369|Akap12_chr10_4214717_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Nolc1|Elovl3_chr19_46123231_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Nolc1|Elovl3_chr19_46123231_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gpr151|Ppp2r2b_chr18_42584555_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gpr151|Ppp2r2b_chr18_42584555_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm24575|Bik_chr15_83522144_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm24575|Bik_chr15_83522144_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Inpp4a|4930439A04Rik_chr1_37314746_F TCGTCGGCAGCGTCGCCTGAACAGCCAGCAGATA 60.1 0.09
mm4_intergenic_Inpp4a|4930439A04Rik_chr1_37314746_R GTCTCGTGGGCTCGGCCTGAAGGGGTTACTGTGCA 59.6 0.09
mm4_intergenic_Ptpru|Mecr_chr4_131841401_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Ptpru|Mecr_chr4_131841401_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Asap1_chr15_64145397_F TCGTCGGCAGCGTCTGTGGGCAATCTTCAGATTCA 57.5 0.08
mm4_intron_Asap1_chr15_64145397_R GTCTCGTGGGCTCGGTAGAGCATCCCTGGGGTGAA 59.9 0.08
mm3_intergenic_Ripk2|A530072M11Rik_chr4_16163842_F Primer3: not found at this Tm N.d. 0.08
mm3_intergenic_Ripk2|A530072M11Rik_chr4_16163842_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Kng1|Eif4a2_chr16_23093746_F TCGTCGGCAGCGTCAGCTGCTGATCTGCCATACC 59.8 0.08
mm4_intergenic_Kng1|Eif4a2_chr16_23093746_R GTCTCGTGGGCTCGGCAGTCCCATCACCACTCCAC 60.0 0.08
mm3_intron_Zfp872_chr9_22195032_F Primer3: not found at this Tm N.d. 0.08
mm3_intron_Zfp872_chr9_22195032_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Ank2_chr3_126958436_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Ank2_chr3_126958436_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm26005|Epcam_chr17_87508121_F TCGTCGGCAGCGTCACCTGCTGCGAATAGACCTG 59.8 0.07
mm4_intergenic_Gm26005|Epcam_chr17_87508121_R GTCTCGTGGGCTCGGGAGGGTTTGCTAAGTGGGCT 59.9 0.07
mm4_intergenic_Zbtb18|1700016C15Rik_chr1_177584728_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Zbtb18|1700016C15Rik_chr1_177584728_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm5473|Gsdmc_chr15_63684971_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm5473|Gsdmc_chr15_63684971_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16163906_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16163906_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_AC121988.1|Gm25740_chr10_46129955_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_AC121988.1|Gm25740_chr10_46129955_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Msrb3_chr10_120837408_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Msrb3_chr10_120837408_R Primer3: not found at this Tm N.d. 0.06
mm3_intergenic_4833412C05Rik|Igf1r_chr7_67952345_F Primer3: not found at this Tm N.d. 0.06
mm3_intergenic_4833412C05Rik|Igf1r_chr7_67952345_R Primer3: not found at this Tm N.d. 0.06
mm3_exon_Hmx2_chr7_131554459_F TCGTCGGCAGCGTCCAGCCTGTCTGTGTCCTCG 60.0 0.06
mm3_exon_Hmx2_chr7_131554459_R GTCTCGTGGGCTCGGTATGGTGCTTAGGGCTTGGC 60.1 0.06
mm4_intron_Grm5_chr7_87746273_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Grm5_chr7_87746273_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16163794_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Ripk2|A530072M11Rik_chr4_16163794_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Lxn_chr3_67463542_F TCGTCGGCAGCGTCATTCAGAGGCAGAGCAGGGT 60.9 0.06
mm4_intron_Lxn_chr3_67463542_R GTCTCGTGGGCTCGGCAAGGAGGTGAGTCTGCGAG 60.1 0.06
mm4_intergenic_Gm14567|Gm16423_chrX_39089048_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm14567|Gm16423_chrX_39089048_R Primer3: not found at this Tm N.d. 0.06
mm4_exon_Nkain3_chr4_20778579_F TCGTCGGCAGCGTCGGGGTCCCTACCTCCTAGC 60.1 0.06
mm4_exon_Nkain3_chr4_20778579_R GTCTCGTGGGCTCGGCACCCACTCACCAGCTGTAG 60.0 0.06
mm4_intergenic_Npas1|Grlf1_chr7_16488344_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Npas1|Grlf1_chr7_16488344_R Primer3: not found at this Tm N.d. 0.05
mm3_intergenic_4930569F06Rik|Suds3_chr5_116921073_F Primer3: not found at this Tm N.d. 0.05
mm3_intergenic_4930569F06Rik|Suds3_chr5_116921073_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Galnt18|Gm25787_chr7_111789561_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Galnt18|Gm25787_chr7_111789561_R Primer3: not found at this Tm N.d. 0.05
mm4_exon_Man1a2_chr3_100685502_F Primer3: not found at this Tm N.d. 0.05
mm4_exon_Man1a2_chr3_100685502_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Erbb2ip|Nln_chr13_103991382_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Erbb2ip|Nln_chr13_103991382_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm22433|Mme_chr3_63159702_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm22433|Mme_chr3_63159702_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm26076|Gm25519_chr3_110604611_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm26076|Gm25519_chr3_110604611_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Ms4a6c|Gm8369_chr19_11486784_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Ms4a6c|Gm8369_chr19_11486784_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm9946|Gm7292_chr6_117668568_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm9946|Gm7292_chr6_117668568_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_1700017N19Rik|Gm26278_chr10_101524004_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_1700017N19Rik|Gm26278_chr10_101524004_R Primer3: not found at this Tm N.d. 0.05
mm3_exon_Cdc34_chr10_79682470_F TCGTCGGCAGCGTCCTGCTGCTGGAACTGAAGGG 60.9 0.05
mm3_exon_Cdc34_chr10_79682470_R GTCTCGTGGGCTCGGCCCAGTTGTACAGGTCACCC 59.9 0.05
mm3_exon_Cdc34-ps_chr11_94742032_F Primer3: not found at this Tm N.d. 0.05
mm3_exon_Cdc34-ps_chr11_94742032_R Primer3: not found at this Tm N.d. 0.05
mm4_exon_Guca2b_chr4_119658807_F TCGTCGGCAGCGTCTAAAAGGTAGGCTGGCTGGG 59.3 0.05
mm4_exon_Guca2b_chr4_119658807_R GTCTCGTGGGCTCGGAAGCGAGGCCATGTCAAGAA 59.9 0.05
mm4_intron_Trpv5_chr6_41675065_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Trpv5_chr6_41675065_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Nav2_chr7_49433878_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Nav2_chr7_49433878_R Primer3: not found at this Tm N.d. 0.04
mm4_exon_Zscan2_chr7_80863457_F Primer3: not found at this Tm N.d. 0.04
mm4_exon_Zscan2_chr7_80863457_R Primer3: not found at this Tm N.d. 0.04
mm4_exon_Ube2r2_chr4_41136126_F Primer3: not found at this Tm N.d. 0.04
mm4_exon_Ube2r2_chr4_41136126_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Errfi1|Park7_chr4_150895948_F TCGTCGGCAGCGTCCCTGCTCCTTGGCTAGCTTT 60.0 0.04
mm4_intergenic_Errfi1|Park7_chr4_150895948_R GTCTCGTGGGCTCGGAAAGCACAAAGGCCAAGCAG 59.8 0.04
mm4_intron_Ikzf1_chr11_11738380_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Ikzf1_chr11_11738380_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Creb3l2_chr6_37404313_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Creb3l2_chr6_37404313_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Rap1gap2_chr11_74409538_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Rap1gap2_chr11_74409538_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_4930471C06Rik|1700080G11Rik_chr4_127504354_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_4930471C06Rik|1700080G11Rik_chr4_127504354_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Htr3a|Htr3b_chr9_48928912_F TCGTCGGCAGCGTCCCTTGCAGAGAGTGGGTGTT 59.8 0.04
mm4_intergenic_Htr3a|Htr3b_chr9_48928912_R GTCTCGTGGGCTCGGGCAGCTGGGCCTCTGAATTA 60.1 0.04
mm4_exon_Stx1b/Stx4a_chr7_127824289_F Primer3: not found at this Tm N.d. 0.04
mm4_exon_Stx1b/Stx4a_chr7_127824289_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Hs3st1_chr5_39644668_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Hs3st1_chr5_39644668_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm23821|Tgfb2_chr1_186238879_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm23821|Tgfb2_chr1_186238879_R Primer3: not found at this Tm N.d. 0.04
mm4_exon_Olfr376_chr11_73374781_F TCGTCGGCAGCGTCGGCACCACAGAAAGGAATCA 58.0 0.04
mm4_exon_Olfr376_chr11_73374781_R GTCTCGTGGGCTCGGGTGTTGATGCTCTGTGGGGA 59.9 0.04
mm4_intergenic_Tk2|Cklf_chr8_104250843_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Tk2|Cklf_chr8_104250843_R Primer3: not found at this Tm N.d. 0.04
mm4_exon_Ngfr_chr11_95587507_F Primer3: not found at this Tm N.d. 0.04
mm4_exon_Ngfr_chr11_95587507_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Piezo1|Cdt1_chr8_122559194_F TCGTCGGCAGCGTCAAGTGTTCTCTGGAGTGGGA 57.8 0.04
mm4_intergenic_Piezo1|Cdt1_chr8_122559194_R GTCTCGTGGGCTCGGGGTCCTGCCTGTGGTAAAGA 59.3 0.04
mm4_exon_Trpv4_chr5_114658377_F Primer3: not found at this Tm N.d. 0.03
mm4_exon_Trpv4_chr5_114658377_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm14481|Gm14483_chrX_11287955_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm14481|Gm14483_chrX_11287955_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm12434|Nr4a3_chr4_48030219_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm12434|Nr4a3_chr4_48030219_R Primer3: not found at this Tm N.d. 0.03
mm4_exon_Rbm42/Gm21982_chr7_30644842_F Primer3: not found at this Tm N.d. 0.03
mm4_exon_Rbm42/Gm21982_chr7_30644842_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Olfr372|Olfr373_chr8_72099572_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Olfr372|Olfr373_chr8_72099572_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gprin2|Syt15_chr14_34216918_F TCGTCGGCAGCGTCTCGTGAAGAAGGTGCCAGAG 59.6 0.03
mm4_intergenic_Gprin2|Syt15_chr14_34216918_R GTCTCGTGGGCTCGGGTGTCTGGCCTGATGCAGAT 60.1 0.03
mm4_intergenic_Aqp9|Aldh1a2_chr9_71187554_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Aqp9|Aldh1a2_chr9_71187554_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm14991|Kir3dl2_chrX_136490315_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm14991|Kir3dl2_chrX_136490315_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Apbb2_chr5_66602491_F TCGTCGGCAGCGTCGAAGCTGAGTATGCTGGCCA 60.1 0.03
mm4_intron_Apbb2_chr5_66602491_R GTCTCGTGGGCTCGGAGAGCTGCAGTTTCTCCACC 59.9 0.03
mm4_exon_Irf2bp2_chr8_126593455_F Primer3: not found at this Tm N.d. 0.03
mm4_exon_Irf2bp2_chr8_126593455_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm10557|Map3k8_chr18_4219119_F TCGTCGGCAGCGTCTGTGACTGTTGCAAGGAGGA 59.1 0.03
mm4_intergenic_Gm10557|Map3k8_chr18_4219119_R GTCTCGTGGGCTCGGAACGAGGTTTTAGGGGCCAG 59.9 0.03
mm4_intergenic_Rab28|Nkx3-2_chr5_41725578_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Rab28|Nkx3-2_chr5_41725578_R Primer3: not found at this Tm N.d. 0.03
mm3_exon_Cdkn1c_chr7_143459898_F Primer3: not found at this Tm N.d. 0.03
mm3_exon_Cdkn1c_chr7_143459898_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm24295|Mef2c_chr13_83300111_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm24295|Mef2c_chr13_83300111_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Ephb1_chr9_101935729_F TCGTCGGCAGCGTCTTTGATGACCCCTTCCACCC 59.5 0.02
mm4_intron_Ephb1_chr9_101935729_R GTCTCGTGGGCTCGGAGGCTTGGTGAATCTGCACT 59.5 0.02
mm4_intergenic_Ifnl3|Sycn_chr7_28527230_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Ifnl3|Sycn_chr7_28527230_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Tm4sf20|Gm22396/Agfg1_chr1_82777268_F TCGTCGGCAGCGTCTTGCAGGGACATAGAGCTGC 60.1 0.02
mm4_intergenic_Tm4sf20|Gm22396/Agfg1_chr1_82777268_R GTCTCGTGGGCTCGGGGAGCTTCCACGTTGCTACT 60.0 0.02
mm4_intergenic_March4|Smarcal1_chr1_72537812_F TCGTCGGCAGCGTCACTGCAACAAGAAAGGAAATGTCC 60.2 0.02
mm4_intergenic_March4|Smarcal1_chr1_72537812_R GTCTCGTGGGCTCGGGGTCAGGGAGAGAAGGGAGA 59.6 0.02
mm4_intergenic_Col4a3|n-R5s213_chr1_82596976_F TCGTCGGCAGCGTCTCTTTTCATGTTCCCAGGGTCA 59.5 0.02
mm4_intergenic_Col4a3|n-R5s213_chr1_82596976_R GTCTCGTGGGCTCGGGGTATGAGCAGAGACTGGGC 59.8 0.02
mm4_intron_Tekt1_chr11_72350983_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Tekt1_chr11_72350983_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Trappc9_chr15_72748268_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Trappc9_chr15_72748268_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Tmem117|Gm25546_chr15_94652320_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Tmem117|Gm25546_chr15_94652320_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm26354|Gm7536_chr3_23776011_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm26354|Gm7536_chr3_23776011_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_2310016G11Rik|Izumo2_chr7_44697505_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_2310016G11Rik|Izumo2_chr7_44697505_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Mmd2|Wipi2_chr5_142615417_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Mmd2|Wipi2_chr5_142615417_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Fam180a|Mtpn_chr6_35497563_F TCGTCGGCAGCGTCGCACCACTTACTGCTAAGCC 58.9 0.02
mm4_intergenic_Fam180a|Mtpn_chr6_35497563_R GTCTCGTGGGCTCGGCACACACCTACAGCCTGGAG 60.0 0.02
mm4_exon_Shox2/Rsrc1_chr3_66981286_F Primer3: not found at this Tm N.d. 0.02
mm4_exon_Shox2/Rsrc1_chr3_66981286_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_5430402E10Rik|Gm14750_chrX_77950627_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_5430402E10Rik|Gm14750_chrX_77950627_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Rap1a|Adora3_chr3_105806970_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Rap1a|Adora3_chr3_105806970_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Diap2_chrX_130120875_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Diap2_chrX_130120875_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_mmu-mir-6343|Gm25974_chr1_76756616_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_mmu-mir-6343|Gm25974_chr1_76756616_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Rpl31-ps18|Ins1_chr19_51912710_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Rpl31-ps18|Ins1_chr19_51912710_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Frg1|Gm2193_chr8_41531816_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Frg1|Gm2193_chr8_41531816_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Gm26430|Gm23895_chr18_78549475_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Gm26430|Gm23895_chr18_78549475_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Gm22797|Robo1_chr16_72502785_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Gm22797|Robo1_chr16_72502785_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Cacna1d|Dcp1a_chr14_30460312_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Cacna1d|Dcp1a_chr14_30460312_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Best3|Lrrc10_chr10_117026107_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Best3|Lrrc10_chr10_117026107_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Best3|Lrrc10_chr10_117025843_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Best3|Lrrc10_chr10_117025843_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Best3|Lrrc10_chr10_117025705_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Best3|Lrrc10_chr10_117025705_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Best3|Lrrc10_chr10_117025645_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Best3|Lrrc10_chr10_117025645_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Aatk_chr11_120042301_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Aatk_chr11_120042301_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Cecr6|Cecr5_chr6_120495381_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Cecr6|Cecr5_chr6_120495381_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Cnnm2_chr19_46866093_F TCGTCGGCAGCGTCTTTAAAGGGCGCCTCAGGTC 60.3 0.02
mm4_intron_Cnnm2_chr19_46866093_R GTCTCGTGGGCTCGGGGGAGCACAAGGACTCTGAC 60.0 0.02
mm4_intron_Chst12_chr5_140508726_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Chst12_chr5_140508726_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Dlgap2_chr8_14418939_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Dlgap2_chr8_14418939_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm7846|Gm597_chr1_28753418_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm7846|Gm597_chr1_28753418_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm4868|Gm23151_chr5_126111097_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm4868|Gm23151_chr5_126111097_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm3839|Ptprg_chr14_11484718_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm3839|Ptprg_chr14_11484718_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm17388|Htr1d_chr4_136388290_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm17388|Htr1d_chr4_136388290_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Cts3|Gm19961_chr13_61642838_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Cts3|Gm19961_chr13_61642838_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Snx14/Gm20537|4932427H20Rik/Snx14_chr9_88427019_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Snx14/Gm20537|4932427H20Rik/Snx14_chr9_88427019_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Ndst3_chr3_123601275_F TCGTCGGCAGCGTCAGGAAGGAAGTGATCGGGGA 59.9 0.02
mm4_intron_Ndst3_chr3_123601275_R GTCTCGTGGGCTCGGAACAGCATGGACATCGTGTC 58.5 0.02
mm4_intron_Flrt2_chr12_95721544_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Flrt2_chr12_95721544_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Atp6v1e2_chr17_86946279_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Atp6v1e2_chr17_86946279_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Ajap1_chr4_153404261_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Ajap1_chr4_153404261_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Ajap1_chr4_153404236_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Ajap1_chr4_153404236_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Ralbp1|Twsg1_chr17_65916755_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Ralbp1|Twsg1_chr17_65916755_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Hid1|Cdr2l_chr11_115376545_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Hid1|Cdr2l_chr11_115376545_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm4409/Lrrtm4|Lrrtm4_chr6_80492178_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm4409/Lrrtm4|Lrrtm4_chr6_80492178_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm23327|Gm26163_chr15_30041376_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm23327|Gm26163_chr15_30041376_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm22074|Pkia_chr3_7235795_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm22074|Pkia_chr3_7235795_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm15582|Lhpp_chr7_132660061_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm15582|Lhpp_chr7_132660061_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm12764|Gm12766_chr7_34424135_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm12764|Gm12766_chr7_34424135_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm11846|n-R5s182_chr4_12395781_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm11846|n-R5s182_chr4_12395781_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gid4|Drg2_chr11_60451207_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gid4|Drg2_chr11_60451207_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Cntnap4|Gm25766_chr8_113373934_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Cntnap4|Gm25766_chr8_113373934_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Chrna10|Nup98_chr7_102121772_F TCGTCGGCAGCGTCCAGTGACATTAAAGACAAACCTGA 57.3 0.02
mm4_intergenic_Chrna10|Nup98_chr7_102121772_R GTCTCGTGGGCTCGGTCCTTTGATGCGTCCTTCCA 59.3 0.02
mm4_intergenic_Rab11fip5|Noto_chr6_85391777_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Rab11fip5|Noto_chr6_85391777_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Nav2_chr7_49503409_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Nav2_chr7_49503409_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Robo1_chr16_72694203_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Robo1_chr16_72694203_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Fam84a|Gm9847_chr12_14253482_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Fam84a|Gm9847_chr12_14253482_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm24168|Gm23790_chr10_31001309_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm24168|Gm23790_chr10_31001309_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Fscn1|Rnf216_chr5_142981950_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Fscn1|Rnf216_chr5_142981950_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Mboat4_chr8_34117146_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Mboat4_chr8_34117146_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Prdm6_chr18_53481422_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Prdm6_chr18_53481422_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm25660|Slc27a6_chr18_58439656_F TCGTCGGCAGCGTCTGTCTCTGATTGCTCTCACCC 59.4 0.01
mm4_intergenic_Gm25660|Slc27a6_chr18_58439656_R GTCTCGTGGGCTCGGATGACTGCTGCTGTTCCTGA 59.3 0.01
mm4_intergenic_Dpf3|Dcaf4_chr12_83501755_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Dpf3|Dcaf4_chr12_83501755_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm26181|Triml1_chr8_43113500_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm26181|Triml1_chr8_43113500_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25999|Fam186b_chr15_99260038_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25999|Fam186b_chr15_99260038_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25999|Fam186b_chr15_99260014_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25999|Fam186b_chr15_99260014_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25999|Fam186b_chr15_99259824_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25999|Fam186b_chr15_99259824_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Iqgap2_chr13_95827746_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Iqgap2_chr13_95827746_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Msr1|Fgf20_chr8_40155249_F TCGTCGGCAGCGTCACATAAGAGAATAGCAACACGGT 57.9 0.01
mm4_intergenic_Msr1|Fgf20_chr8_40155249_R GTCTCGTGGGCTCGGCAGTCAGGGTTCTAACATGAAACA 58.9 0.01
mm4_intergenic_Gm11993|Abca13_chr11_9189783_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm11993|Abca13_chr11_9189783_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Lelp1|Sprr2a1/Sprr2a2_chr3_92159822_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Lelp1|Sprr2a1/Sprr2a2_chr3_92159822_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm21392|Gm23727_chr6_78501024_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm21392|Gm23727_chr6_78501024_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm13652|A330043C09Rik_chr2_75140163_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm13652|A330043C09Rik_chr2_75140163_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_A930011G23Rik|Gm16228_chr5_99572792_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_A930011G23Rik|Gm16228_chr5_99572792_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gxylt2|Gm15576_chr6_100711363_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gxylt2|Gm15576_chr6_100711363_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm9992|Gm25872_chr17_7466668_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm9992|Gm25872_chr17_7466668_R Primer3: not found at this Tm N.d. 0.01
mm3_intron_Fam13b_chr18_34466227_F Primer3: not found at this Tm N.d. 0.01
mm3_intron_Fam13b_chr18_34466227_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm10715/Gm26870|4930433N12Rik_chr9_3100648_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm10715/Gm26870|4930433N12Rik_chr9_3100648_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_6530411M01Rik|Gm8492_chr17_9261593_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_6530411M01Rik|Gm8492_chr17_9261593_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Atp6v1e2_chr17_86946252_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Atp6v1e2_chr17_86946252_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Col6a2|Col6a1_chr10_76653034_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Col6a2|Col6a1_chr10_76653034_R Primer3: not found at this Tm N.d. 0.01
mm4_exon_Snx15_chr19_6128157_F Primer3: not found at this Tm N.d. 0.01
mm4_exon_Snx15_chr19_6128157_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Prdm6_chr18_53504944_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Prdm6_chr18_53504944_R Primer3: not found at this Tm N.d. 0.01
mm3_exon_Cdkn1c_chr7_143459946_F Primer3: not found at this Tm N.d. 0.01
mm3_exon_Cdkn1c_chr7_143459946_R Primer3: not found at this Tm N.d. 0.01
mm3_exon_Cdkn1c_chr7_143459922_F Primer3: not found at this Tm N.d. 0.01
mm3_exon_Cdkn1c_chr7_143459922_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm22969|Sergef_chr7_46475701_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm22969|Sergef_chr7_46475701_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Rab3gap2_chr1_185277880_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Rab3gap2_chr1_185277880_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_n-R5s92|Gadl1_chr9_115896810_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_n-R5s92|Gadl1_chr9_115896810_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Spp2|Glrp1_chr1_88494877_F TCGTCGGCAGCGTCTCTGACCTCTGTGGGAAGGA 59.5 0.01
mm4_intergenic_Spp2|Glrp1_chr1_88494877_R GTCTCGTGGGCTCGGGGGACCTCATCATGTTCCAGT 59.4 0.01
mm4_intergenic_Pik3cb|Gm6432_chr9_99165462_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Pik3cb|Gm6432_chr9_99165462_R Primer3: not found at this Tm N.d. 0.01
mm4_exon_Ptpn14_chr1_189871287_F Primer3: not found at this Tm N.d. 0.01
mm4_exon_Ptpn14_chr1_189871287_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25127|Gm9912_chr3_149164427_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25127|Gm9912_chr3_149164427_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Eif3s6-ps1|Gm11995_chr11_9886235_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Eif3s6-ps1|Gm11995_chr11_9886235_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Fgf9|Gm25614_chr14_58218164_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Fgf9|Gm25614_chr14_58218164_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Il1r1_chr1_40283604_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Il1r1_chr1_40283604_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Ssxa1|Gm1848_chrX_21135672_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Ssxa1|Gm1848_chrX_21135672_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Snx16|Gm22795_chr3_10574987_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Snx16|Gm22795_chr3_10574987_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Snx16|Gm22795_chr3_10574954_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Snx16|Gm22795_chr3_10574954_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm23189|Gm15671_chr1_68005084_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm23189|Gm15671_chr1_68005084_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Sept6_chrX_36934914_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Sept6_chrX_36934914_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Prss39|Cfc1_chr1_34520524_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Prss39|Cfc1_chr1_34520524_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_BC006965_chr11_112678293_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_BC006965_chr11_112678293_R Primer3: not found at this Tm N.d. 0.01
mm4_exon_Mllt10_chr2_18064766_F TCGTCGGCAGCGTCATTATGTGTGCCCTCCTCGG 59.5 0.01
mm4_exon_Mllt10_chr2_18064766_R GTCTCGTGGGCTCGGAGCCATGTCCTTGCTGACTC 60.0 0.01
mm4_exon_Madd_chr2_91182933_F TCGTCGGCAGCGTCTACCACTCAGCCCCGAGG 60.3 0.01
mm4_exon_Madd_chr2_91182933_R GTCTCGTGGGCTCGGCCCACGACGAAAGGTGTGAG 60.9 0.01
mm4_exon_Kctd17_chr15_78437194_F Primer3: not found at this Tm N.d. 0.01
mm4_exon_Kctd17_chr15_78437194_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Zswim6|Gm22118_chr13_107793644_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Zswim6|Gm22118_chr13_107793644_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_E130006D01Rik/Gm16019|E130006D01Rik_chr5_111753739_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_E130006D01Rik/Gm16019|E130006D01Rik_chr5_111753739_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_E130006D01Rik/Gm16019|E130006D01Rik_chr5_111753703_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_E130006D01Rik/Gm16019|E130006D01Rik_chr5_111753703_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Stxbp4_chr11_90618759_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Stxbp4_chr11_90618759_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Sall2|Gm26328_chr14_52332476_F TCGTCGGCAGCGTCCCAGACCATTTTACATTTCCTAGGG 59.4 0.00
mm4_intergenic_Sall2|Gm26328_chr14_52332476_R GTCTCGTGGGCTCGGGGGAGTTTGAGTTTGAGGCCT 60.2 0.00
mm4_intergenic_2810032G03Rik|Gm24758_chr12_5463213_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_2810032G03Rik|Gm24758_chr12_5463213_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Egln2_chr7_27165555_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Egln2_chr7_27165555_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Mir344d-2|Gm23490_chr7_61700183_F TCGTCGGCAGCGTCATGTGGTGGCATTCCCTGTG 60.6 0.00
mm4_intergenic_Mir344d-2|Gm23490_chr7_61700183_R GTCTCGTGGGCTCGGACAAAACAAGGCAGAGTGCT 58.2 0.00
mm4_intron_Afap1l2_chr19_56920607_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Afap1l2_chr19_56920607_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Epb4.1l4b|Gm12530_chr4_57165557_F TCGTCGGCAGCGTCGCAGTTCCAAGGGTCAGGTT 60.1 0.00
mm4_intergenic_Epb4.1l4b|Gm12530_chr4_57165557_R GTCTCGTGGGCTCGGAACACTTGGGCTGCTCCTAA 59.2 0.00
mm4_intergenic_Gm24274|Gm24677_chr8_67277857_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm24274|Gm24677_chr8_67277857_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Elmo2_chr2_165323474_F TCGTCGGCAGCGTCCACAAGGAAGAGGAGGAGCC 59.7 0.00
mm4_intron_Elmo2_chr2_165323474_R GTCTCGTGGGCTCGGTATTGAAGGAGTTGGGCCCG 59.7 0.00
mm4_intergenic_E430024P14Rik|Tagap_chr17_7909275_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_E430024P14Rik|Tagap_chr17_7909275_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Susd4_chr1_182800326_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Susd4_chr1_182800326_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Otud7a_chr7_63639479_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Otud7a_chr7_63639479_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm22084|Gm24502_chr5_75508116_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm22084|Gm24502_chr5_75508116_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Celf3_chr3_94479073_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Celf3_chr3_94479073_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Inpp4b_chr8_81364443_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Inpp4b_chr8_81364443_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Uncx|Micall2_chr5_139548229_F TCGTCGGCAGCGTCCAAACTCTGGGCTCCATCGT 60.0 0.00
mm4_intergenic_Uncx|Micall2_chr5_139548229_R GTCTCGTGGGCTCGGCTCCCCAAAAGAGGAGTGCA 59.5 0.00
mm4_intergenic_Uggt1|Neurl3_chr1_36260270_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Uggt1|Neurl3_chr1_36260270_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm25513|Gm15975_chr5_55547191_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm25513|Gm15975_chr5_55547191_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm24298|4921513I03Rik_chr10_120710988_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm24298|4921513I03Rik_chr10_120710988_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm15442|Gm24749_chr3_78616253_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm15442|Gm24749_chr3_78616253_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ephx1|9130409I23Rik_chr1_181034037_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ephx1|9130409I23Rik_chr1_181034037_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Akr7a5|Gm25732_chr4_139336309_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Akr7a5|Gm25732_chr4_139336309_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_AI854517|Rhcg_chr7_79540664_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_AI854517|Rhcg_chr7_79540664_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_A730085K08Rik|9530059O14Rik_chr9_122552327_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_A730085K08Rik|9530059O14Rik_chr9_122552327_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Rhbdf2_chr11_116604411_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Rhbdf2_chr11_116604411_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_9230117E06Rik_chr16_22514702_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_9230117E06Rik_chr16_22514702_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cxxc5|Gm23882_chr18_35940890_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cxxc5|Gm23882_chr18_35940890_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Synm_chr7_67733236_F TCGTCGGCAGCGTCCCAGAGAGCCATTCAGGACA 59.0 0.00
mm4_exon_Synm_chr7_67733236_R GTCTCGTGGGCTCGGCGGTGGCCTCAGATGAGAAG 60.1 0.00
mm4_exon_Stt3b_chr9_115310137_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Stt3b_chr9_115310137_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Kazn_chr4_142126573_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Kazn_chr4_142126573_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Zswim6|Smim15_chr13_107937592_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Zswim6|Smim15_chr13_107937592_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm7577|Enpp2_chr15_54803665_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm7577|Enpp2_chr15_54803665_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Extl1|Pafah2_chr4_134393588_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Extl1|Pafah2_chr4_134393588_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Dram1_chr10_88336189_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Dram1_chr10_88336189_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm8919|Gm8935_chr3_11861335_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm8919|Gm8935_chr3_11861335_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Twsg1|Ankrd12_chr17_65957319_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Twsg1|Ankrd12_chr17_65957319_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Sorbs2_chr8_45641761_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Sorbs2_chr8_45641761_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Rabgap1l_chr1_160579724_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Rabgap1l_chr1_160579724_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Grid1_chr14_35347874_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Grid1_chr14_35347874_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Gm26822_chr16_10829870_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Gm26822_chr16_10829870_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Fgf12_chr16_28345289_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Fgf12_chr16_28345289_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Arhgef17_chr7_100918253_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Arhgef17_chr7_100918253_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ufm1|Trpc4_chr3_54034075_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ufm1|Trpc4_chr3_54034075_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Nuf2|Rgs5_chr1_169589230_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Nuf2|Rgs5_chr1_169589230_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Igf1|Pmch_chr10_87959196_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Igf1|Pmch_chr10_87959196_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm9885|Mrpl46_chr7_78614942_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm9885|Mrpl46_chr7_78614942_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm9002|Kifc5c-ps_chr10_117570974_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm9002|Kifc5c-ps_chr10_117570974_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm7722|Gm14609_chrX_47081420_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm7722|Gm14609_chrX_47081420_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm7146|Klhl4_chrX_114258192_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm7146|Klhl4_chrX_114258192_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm26468|Rpsa-ps10_chr3_149782698_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm26468|Rpsa-ps10_chr3_149782698_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm26468|Rpsa-ps10_chr3_149782440_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm26468|Rpsa-ps10_chr3_149782440_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm1698|Gm24202_chr8_27760889_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm1698|Gm24202_chr8_27760889_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm15637|Myl2_chr5_122100618_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm15637|Myl2_chr5_122100618_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm14982|Gm26209_chrX_130716862_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm14982|Gm26209_chrX_130716862_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gid4|Drg2_chr11_60451277_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gid4|Drg2_chr11_60451277_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Csf2rb2|Csf2rb_chr15_78309656_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Csf2rb2|Csf2rb_chr15_78309656_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cpq|Tspyl5_chr15_33648375_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cpq|Tspyl5_chr15_33648375_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_AC116451.1|Rpl13a-ps1_chr19_50019884_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_AC116451.1|Rpl13a-ps1_chr19_50019884_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_4930594M17Rik|Gm26012_chr18_81376849_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_4930594M17Rik|Gm26012_chr18_81376849_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Magel2_chr7_62377843_F TCGTCGGCAGCGTCCTTTGGCTCATCCTCCTCCC 59.8 0.00
mm4_exon_Magel2_chr7_62377843_R GTCTCGTGGGCTCGGGAGGTGGGTGGGTCATTGG 60.0 0.00
mm4_exon_Fbxo31_chr8_121554290_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Fbxo31_chr8_121554290_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Zmat4_chr8_24053974_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Zmat4_chr8_24053974_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Zmat4_chr8_24053902_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Zmat4_chr8_24053902_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Nox3|Gm23186_chr17_3835130_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Nox3|Gm23186_chr17_3835130_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ppp1r13b|2010107E04Rik_chr12_111933491_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ppp1r13b|2010107E04Rik_chr12_111933491_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Zic5_chr14_122464869_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Zic5_chr14_122464869_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Itpa_chr2_130676314_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Itpa_chr2_130676314_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm15883|Cyp2f2_chr7_27130772_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm15883|Cyp2f2_chr7_27130772_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Scd1|Wnt8b_chr19_44428092_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Scd1|Wnt8b_chr19_44428092_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Msx3|Caly_chr7_140060267_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Msx3|Caly_chr7_140060267_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cntnap5a|Gm19965_chr1_116787276_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cntnap5a|Gm19965_chr1_116787276_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Tpst1_chr5_130089712_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Tpst1_chr5_130089712_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Stk10_chr11_32613602_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Stk10_chr11_32613602_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Smad6_chr9_63974218_F TCGTCGGCAGCGTCGCAGAAGGGCTCCTTTTCCA 60.2 0.00
mm4_intron_Smad6_chr9_63974218_R GTCTCGTGGGCTCGGCAAAATGCTGCCTGCTTGGA 59.6 0.00
mm4_intron_Slc51a_chr16_32484263_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Slc51a_chr16_32484263_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Sil1_chr18_35459312_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Sil1_chr18_35459312_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Runx1_chr16_92744643_F TCGTCGGCAGCGTCGCAAAATATGGCGTGAGTTCTC 58.3 0.00
mm4_intron_Runx1_chr16_92744643_R GTCTCGTGGGCTCGGTCTAGTTTGTAGCCGCAGC 57.5 0.00
mm4_intron_Prkce_chr17_86572711_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Prkce_chr17_86572711_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Hpcal1_chr12_17772792_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Hpcal1_chr12_17772792_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Exoc4_chr6_33843214_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Exoc4_chr6_33843214_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Abcc8_chr7_46153122_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Abcc8_chr7_46153122_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_1110018N20Rik_chr2_167189551_F TCGTCGGCAGCGTCGCGGAGTCCTCGGGATCC 61.6 0.00
mm4_intron_1110018N20Rik_chr2_167189551_R GTCTCGTGGGCTCGGGCGCAGAACCCGGAGTTATA 59.8 0.00
mm4_intergenic_Slc16a9/Gm7097/Gm9877|Fam13c_chr10_70381025_F TCGTCGGCAGCGTCGAAGCCACTGTCAGAGCCAA 60.2 0.00
mm4_intergenic_Slc16a9/Gm7097/Gm9877|Fam13c_chr10_70381025_R GTCTCGTGGGCTCGGGTCCTATCCCTGCCATCTGC 59.9 0.00
mm4_intergenic_Rgs6|Dpf3_chr12_83163077_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Rgs6|Dpf3_chr12_83163077_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Nptx2|Gm6272_chr5_144721889_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Nptx2|Gm6272_chr5_144721889_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Mdm1|Il22_chr10_118197379_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Mdm1|Il22_chr10_118197379_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Iltifb|Gm9040_chr10_118300399_F TCGTCGGCAGCGTCTGCCTACACCCTCCTTCTGA 59.8 0.00
mm4_intergenic_Iltifb|Gm9040_chr10_118300399_R GTCTCGTGGGCTCGGGTGGTAGAGGAAAGGGACTGC 60.0 0.00
mm4_intergenic_Gpr55/4933407L21Rik|Gpr55_chr1_85960085_F TCGTCGGCAGCGTCCAAGCAACAAGAGCAGAGGC 59.7 0.00
mm4_intergenic_Gpr55/4933407L21Rik|Gpr55_chr1_85960085_R GTCTCGTGGGCTCGGTGTTCCTGTTCAGTGTGTTTGT 58.5 0.00
mm4_intergenic_Gm9312|Gm16372_chr12_24322482_F TCGTCGGCAGCGTCTACTCAGAGGCTCCCATCCC 60.1 0.00
mm4_intergenic_Gm9312|Gm16372_chr12_24322482_R GTCTCGTGGGCTCGGCGAGCTCCCAGGGCAAATAT 59.8 0.00
mm4_intergenic_Gm9218|Gm379_chrX_108660737_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm9218|Gm379_chrX_108660737_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm4419|Gm5633_chr12_21659219_F TCGTCGGCAGCGTCACACCCCTTCACCAACACAG 60.1 0.00
mm4_intergenic_Gm4419|Gm5633_chr12_21659219_R GTCTCGTGGGCTCGGCGAGCTCCCAGGGCAAATAT 59.8 0.00
mm4_intergenic_Gm4409/Lrrtm4|Lrrtm4_chr6_80226187_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm4409/Lrrtm4|Lrrtm4_chr6_80226187_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm26915|Nrip1_chr16_76205052_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm26915|Nrip1_chr16_76205052_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm25460|Gm5263_chr1_145850748_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm25460|Gm5263_chr1_145850748_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm25186|Gm11379_chr13_31760850_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm25186|Gm11379_chr13_31760850_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm22894|Ky_chr9_102396142_F TCGTCGGCAGCGTCTAAGTGCAGGGACCCTCCAA 60.4 0.00
mm4_intergenic_Gm22894|Ky_chr9_102396142_R GTCTCGTGGGCTCGGTCTCGGGGTTTACTGCACAC 59.9 0.00
mm4_intergenic_Gm22251|Zfp521_chr18_13387438_F TCGTCGGCAGCGTCGGAGAAAGAGGCTGAGAGCT 58.8 0.00
mm4_intergenic_Gm22251|Zfp521_chr18_13387438_R GTCTCGTGGGCTCGGAGCAGTCAGGGGATCTCCTT 59.9 0.00
mm4_intergenic_Gm22157|Hivep1_chr13_42051847_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm22157|Hivep1_chr13_42051847_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm15492|Ogg1_chr6_113326919_F TCGTCGGCAGCGTCCTTTCCAAACCTCGAGGGCT 59.9 0.00
mm4_intergenic_Gm15492|Ogg1_chr6_113326919_R GTCTCGTGGGCTCGGGCACACCACCAAACCCCTAA 60.4 0.00
mm4_intergenic_Frk|Gm26341_chr10_35034037_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Frk|Gm26341_chr10_35034037_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cpd|Tmigd1_chr11_76881858_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cpd|Tmigd1_chr11_76881858_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cmklr1|1700069L16Rik_chr5_113652061_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cmklr1|1700069L16Rik_chr5_113652061_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cenpp|Tes3-ps_chr13_49490256_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cenpp|Tes3-ps_chr13_49490256_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Cdc7|Tgfbr3_chr5_107084464_F TCGTCGGCAGCGTCAGCCATACTTATACAAATGCTGTGA 58.6 0.00
mm4_intergenic_Cdc7|Tgfbr3_chr5_107084464_R GTCTCGTGGGCTCGGTCACAAAAGTCATTTTCATGTGACA 58.1 0.00
mm4_intergenic_Agpat9|Gm20484_chr5_100920455_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Agpat9|Gm20484_chr5_100920455_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_4732419C18Rik|Rab4a_chr8_123788754_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_4732419C18Rik|Rab4a_chr8_123788754_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_3110053B16Rik|Gm10478_chr12_20890008_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_3110053B16Rik|Gm10478_chr12_20890008_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_2410019O14Rik|Gm25407_chr2_157687793_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_2410019O14Rik|Gm25407_chr2_157687793_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Zc3hav1l_chr6_38299064_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Zc3hav1l_chr6_38299064_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Gigyf1_chr5_137520953_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Gigyf1_chr5_137520953_R Primer3: not found at this Tm N.d. 0.00
mm3_intron_Pdzrn4_chr15_92742368_F Primer3: not found at this Tm N.d. 0.00
mm3_intron_Pdzrn4_chr15_92742368_R Primer3: not found at this Tm N.d. 0.00
mm3_intron_Madd_chr2_91169230_F Primer3: not found at this Tm N.d. 0.00
mm3_intron_Madd_chr2_91169230_R Primer3: not found at this Tm N.d. 0.00
mm3_intergenic_Zdhhc16|Mms19/Zdhhc16_chr19_41940761_F Primer3: not found at this Tm N.d. 0.00
mm3_intergenic_Zdhhc16|Mms19/Zdhhc16_chr19_41940761_R Primer3: not found at this Tm N.d. 0.00
mm3_intergenic_Acot2|Acot1_chr12_84004138_F Primer3: not found at this Tm N.d. 0.00
mm3_intergenic_Acot2|Acot1_chr12_84004138_R Primer3: not found at this Tm N.d. 0.00
mm3_exon_Nudc_chr4_133545850_F Primer3: not found at this Tm N.d. 0.00
mm3_exon_Nudc_chr4_133545850_R Primer3: not found at this Tm N.d. 0.00

Off-target amplicon sequences with primers

These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.

mm4_intergenic_Sspn|Itpr2_chr6_146082966 GAACAGACCCCAAGGCCCACAGAGAGGAGGAGGAGGAGCCAGCAGATGGTGGTTGGTTTTTGTATCAAGCACACACTGTG
AATATTCTCAGTAGCTTCATTCGTGGCTGAGGCCACAAGAGGTCAG
mm4_intron_Notch2_chr3_98048256 TGCGAGACTATGGAGCAAGATGTATATGAGCTTGTAGGATGGAGGAGGGGCCGGTCTATGGGTGGAGCACATGGGTGGGA
GGGGATCGGACCTGGAAACTT
mm4_intron_Pla2g6_chr15_79304981 AAGCTGTCCCTTTCGACATCCAGGAGGATGAGCCAGCCAATGGCATTAACCCTACGTGCAGGGACAGCAGGGGAGGCTGC
CAGGACCTCTATGTC
mm4_intergenic_Ddit4|Anapc16_chr10_59956899 ACAGCATCCCTAGGCAACGGGGGCAACCAATCAACCTCAGCACCAGGAGCCGATCGAGGGAATCTTGAAAAGCAGTATTT
TTTTTCCTTGAAGTATCTCAAAATACTGACAGTATTTTCTTTCTTTATGTTGGAACTGGA
mm4_intron_Nav2_chr7_49213105 GGATGGATCCTGCTCAGCTCTCCTTCTTCCGGCTTCCCCTCCTGGCTGGAGCCTCTTCCTGCCTTCTTGGCACCAGAAGC
TCTGCTGGCTTCTGTCCTGAGCAGTGT
mm4_intron_Sec24d_chr3_123305734 AGGATGGATTGTTTAGATGTACCTTTGTTTGAGTGCCTTAGACCGGATATTCCTCCTGACCAAGCTTTGTCTGTGTGACC
TTGAATGACCCAGGC
mm4_intergenic_Gm13028|4933427I22Rik_chr4_139935946 GCTCACCATTTGCCAGAAGCACTGTTTGCCCTCGTCTGGATCCTGCTCCTGGTAGGCACTGTAGACTAGAGGACGTCACT
CTCAACACCCTAAGCAACAGAAGACGGCACTGGAAG
mm4_intergenic_Plekha2|Tacc1/mmu-mir-8108_chr8_25137855 TCCCCTCCTACCACCATCTCCTGCCTCTAAAACAGGTACCAAATGAGGAGGAGCAGGCCGAGGGAGGGAGGGCTGGGCTC
CAACTCTTTGCTCCAAATATCAGCTATAAACACAAATTCACTCTGCTTCCTGGAGCCAAA
mm4_intergenic_Inpp4a|4930439A04Rik_chr1_37314746 GCCTGAACAGCCAGCAGATAATGTGGTGAGTGGCTAACTCCGGCGTCCGGCTTGGGAATCCTTTGACCTGCTCCTTCTAC
TG
TGTGATTCTTGCACAGTAACCCCTTCAGG
mm4_intron_Asap1_chr15_64145397 TGTGGGCAATCTTCAGATTCAAATAGACCTTCCTAAACCCTCCACCGGCCCCTCTTCCTAGAAGATCTCAGTGTACTCCC
CATCTTGACACTATGGTGATCCAATGATGAGGGACAGTGCTTCACCCCAGGGATGCTCTA
mm4_intergenic_Kng1|Eif4a2_chr16_23093746 AGCTGCTGATCTGCCATACCATAAGCACCCAGAACAGAAGCAGGTACCACTAACTTATGAGAAGGAGGAGGAGCAGGACC
AAGG
GGTGAGCTGTGACAAAGTGGAGTGGTGATGGGACTG
mm4_intergenic_Gm26005|Epcam_chr17_87508121 ACCTGCTGCGAATAGACCTGGAGGACTGGTTGTTAAGGGAACACCTCCTGGAACACTCACTTGCTCCCTCCATCAGCTCC
TCCTCCCG
GCCTGCCTCCCAGGGCCTGGGCTGTAACACAGCCCACTTAGCAAACCCTC
mm3_exon_Hmx2_chr7_131554459 CAGCCTGTCTGTGTCCTCGGAGGAGGAGGAGCCGGAGGAAGGTTGGAAGGCTCCGGCTTGCTTCTGCCCAGATCCGCACG
GCCCCAAGGAGCCAAGCCCTAAGCACCATA
mm4_intron_Lxn_chr3_67463542 ATTCAGAGGCAGAGCAGGGTCCCGCGGCCGGGATGGGGTGGGGGCAGTAGGGGGAGCCGATCGCAGGGCTTCTCCTCGCA
GACTCACCTCCTTG
mm4_exon_Nkain3_chr4_20778579 GGGGTCCCTACCTCCTAGCGCGAGGGTCGGCTTCTTGAGGAGGGGGAGCCGGGCGGAGGGCGGGGGATGGAAGAGGCTAC
AGCTGGTGAGTGGGTG
mm3_exon_Cdc34_chr10_79682470 CTGCTGCTGGAACTGAAGGGGCTGCAGGAGGAGCCGGTGGAGGGCTTCCGGGTGACGCTGGTGGACGAGGGTGACCTGTA
CAACTGGG
mm4_exon_Guca2b_chr4_119658807 TAAAAGGTAGGCTGGCTGGGGGTCTCACCTTGATGTAGACACCCTGTGCACTCTGCAGGAGCAGCAGCAGGACGACGGCA
GCCCACAGTTGGCTTCTTGACATGGCCTCGCTT
mm4_intergenic_Errfi1|Park7_chr4_150895948 CCTGCTCCTTGGCTAGCTTTGGTCACCTCTCCAGCCTCCATTCACCGGCTCCTTCTCATGCCACGCCTCCCTGCTCCTCC
ATTACCCCTAGCCAGCGGCTGCTTGGCCTTTGTGCTTT
mm4_intergenic_Htr3a|Htr3b_chr9_48928912 CCTTGCAGAGAGTGGGTGTTTGCTGTCAGGAGCAGGAGCCAGAGGAAGGGGCCTGATGCACACTCGTTGGCTGTTTCCTT
GGACAGCCATCTGCCCACAGCCTATAATTCAGAGGCCCAGCTGC
mm4_exon_Olfr376_chr11_73374781 GGCACCACAGAAAGGAATCAAACTGCCATCTCCCAGTTCCTCCTCCTGGGCCTGCCCATCCCCACAGAGCATCAACAC
mm4_intergenic_Piezo1|Cdt1_chr8_122559194 AAGTGTTCTCTGGAGTGGGACCCACCACTGGCTCCTCCTGCTGGTGGCCATTTGCCTGGTCAGGTCCCTCCCAGGACCTG
GTGTCTTCCTCTTTCCTTAAAGTGTGTCTGTCTCCTCCTCTTTACCACAGGCAGGACC
mm4_intergenic_Gprin2|Syt15_chr14_34216918 TCGTGAAGAAGGTGCCAGAGGTTCATCCAGCAGGAGGAGCCTGTTGGAGGCAGGTGGGAGGGGGTTGAGTATTTTGGGTA
TACTGAAAAGAAGCCGGTGTGTTGGCAGATCCTTGAGAGTATCTGCATCAGGCCAGACAC
mm4_intron_Apbb2_chr5_66602491 GAAGCTGAGTATGCTGGCCATGCTGATGGCTACTGCAGAGCACACATTTCACAGGCCCACCGCAGCCCCGCCCACCAGCC
CCGCCCACCAGCTCCGCCTCCTGCCGGTATCTCATGGGTGGAGAAACTGCAGCTCT
mm4_intergenic_Gm10557|Map3k8_chr18_4219119 TGTGACTGTTGCAAGGAGGATGTCAAAGCTGGTTACCTAGAAGCAAGGGATAGACTAGAAGGCCCTGAGGACCAGGAGGA
AGAGACAGTGGAGGG
GGTGAGAGACCAGAGGCTGGCCCCTAAAACCTCGTT
mm4_intron_Ephb1_chr9_101935729 TTTGATGACCCCTTCCACCCCACCCCCATAGACAGGGTCCTACTCCTGCAGCCATCCTCAAGTTGACTACCTTTGGGAAG
CTTTCTTTGTGTTCTCTTTGCTGATATTAGTGCAGATTCACCAAGCCT
mm4_intergenic_Tm4sf20|Gm22396/Agfg1_chr1_82777268 TTGCAGGGACATAGAGCTGCTTTCTGCTGCTAGATCCTCAGGAGGAAGAGTCGGGAGAAGGCTGCTCACAGGAGTAAGGA
ATAAGGTTGGCTGAGTAGCAACGTGGAAGCTCC
mm4_intergenic_March4|Smarcal1_chr1_72537812 ACTGCAACAAGAAAGGAAATGTCCTCTTTCATCTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCCTTCTCTCCCTGACC
mm4_intergenic_Col4a3|n-R5s213_chr1_82596976 TCTTTTCATGTTCCCAGGGTCACCTTCCTCCAGCTCCTCCTGCTGTTGCTTTCTCCAAATATAGCAGGGTTTTGTTTGGT
GAGACAGAGGTCAAGATCAACACAGCACAGCCGCCCAGTCTCTGCTCATACC
mm4_intergenic_Fam180a|Mtpn_chr6_35497563 GCACCACTTACTGCTAAGCCTTGCTAGTTTGTGAGACTTGGTCTCAGTGTATTCTATCATTGAAGAGTTTCCAAGACGAG
GATCCGGTGGAGGG
GTGAAGGCTCCAGGCTGTAGGTGTGTG
mm4_intron_Cnnm2_chr19_46866093 TTTAAAGGGCGCCTCAGGTCCTAGGAGGCCTTCTCCTGGCTGCTCCTCCTGATGCCAGTCTTCCTCCTATCTCACTTCTG
CATAGAGGTGCTCCTGTTGGCCCAGCAGCTCCCTGTCAGAGTCCTTGTGCTCCC
mm4_intron_Ndst3_chr3_123601275 AGGAAGGAAGTGATCGGGGAGGGATGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA
TTTTTATTCTCCATGGACACGATGTCCATGCTGTT
mm4_intergenic_Chrna10|Nup98_chr7_102121772 CAGTGACATTAAAGACAAACCTGATTTACTTTTCTCCCTCCACCGGCTCTTCCTACAGGCTACTCAGTGTCTGAATGCAT
GCCATGGAAGGACGCATCAAAGGA
mm4_intergenic_Gm25660|Slc27a6_chr18_58439656 TGTCTCTGATTGCTCTCACCCTGTAATCATCAGCTTTAGCTTTCTAAGGCTGCAGCNNNNNNNNNNNNNNNNNNNNNNNN
N
NNNNNNNNNNNNNNNNTCAGGAACAGCAGCAGTCAT
mm4_intergenic_Msr1|Fgf20_chr8_40155249 ACATAAGAGAATAGCAACACGGTNNNNNNNNNNNNNNNNNNNNNNNNNCCCGTTCTCCTGCTCCTCCTCCTGAACACTAC
CTTTGTTTCATGTTAGAACCCTGACTG
mm4_intergenic_Spp2|Glrp1_chr1_88494877 TCTGACCTCTGTGGGAAGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTCTTACTACCACTGGAAC
ATGATGAGGTCCC
mm4_exon_Mllt10_chr2_18064766 ATTATGTGTGCCCTCCTCGGGCGGCGGCGTTAGCGGCCGGGTGGAGGTGGGGAGGGAGGACGCCGCNNNNNNNNNNNNNN
NNNNNNNNACGGTGGCGGG
GAGGTGGGGGGAGTCAGCAAGGACATGGCT
mm4_exon_Madd_chr2_91182933 TACCACTCAGCCCCGAGGCGGGAGGAGGAGGCGGCGGAGGGGGCTGGGGCCGTACCATTCGCCGCGCGGGGGACGGGGCT
GCACCGAGCGGAGCCCGGCGACGCTCACACCTTTCGTCGTGGG
mm4_intergenic_Sall2|Gm26328_chr14_52332476 CCAGACCATTTTACATTTCCTAGGGTCTCATTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTTTTTTAACTGTAGCTCTGGCTAGGCCTCAAACTCAAACTCCC
mm4_intergenic_Mir344d-2|Gm23490_chr7_61700183 ATGTGGTGGCATTCCCTGTGCAGGAACTAGAAGCCAAGGAATCAGAACATAGAGGCTCTGAAACAAACAAGCACTCTCCT
TGCAGCCTTCCACAGGCTCCATCTCCTGACAGATACAGAAGCACTCTGCCTTGTTTTGT
mm4_intergenic_Epb4.1l4b|Gm12530_chr4_57165557 GCAGTTCCAAGGGTCAGGTTCTTCTTCGACAAGGCTCCGCCCAGCACAGCAGTCANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN
NNNNNNNNNNNNNNNNNATTAGGAGCAGCCCAAGTGTT
mm4_intron_Elmo2_chr2_165323474 CACAAGGAAGAGGAGGAGCCTGGATAGGGTGGGGCACAGCAGGAGGAGGAGCCTGGAAAGGGTGGGGCGCAGCAGGCTAA
GAGTGGCCTGGGCTGTCCCTCAAACTGCAGGCTACGGGCCCAACTCCTTCAATA
mm4_intergenic_Uncx|Micall2_chr5_139548229 CAAACTCTGGGCTCCATCGTTTTTAAAATTTTGGGCTGTTCCCCCCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGATGCACTCCTCTTTTGGGGAG
mm4_exon_Synm_chr7_67733236 CCAGAGAGCCATTCAGGACAAGATAGTTGCATTCATCAAAACCACCCTTCGCCCTCCTCCTCCTCCTCCTCTTCATTGTC
TAGATAAAGAAGAGCCACTTTCTTCTCATCTGAGGCCACCG
mm4_exon_Magel2_chr7_62377843 CTTTGGCTCATCCTCCTCCCCCAGGAACCCCGATGACACACCCTCCCGGGACCTCGATGGCGCACNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGGACCCCAATGACCCACCCACCTC
mm4_intron_Smad6_chr9_63974218 GCAGAAGGGCTCCTTTTCCAAACGAAAGGANNNNNNNNNNNNNNNNNNNNCTAAGAGGAAAAAAAATAAGTTTTTCCCCC
CCAAAGAGGGCCTCCCTCGAGCCGCCCCTCCTCCAGCCTCCAAGCAGGCAGCATTTTG
mm4_intron_Runx1_chr16_92744643 GCAAAATATGGCGTGAGTTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGCTGCGGCTACAAACTAGA
mm4_intron_1110018N20Rik_chr2_167189551 GCGGAGTCCTCGGGATCCGCCTGCTCGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN
NNNNNNNNCGGCGATGGCTTTTTATAACTCCGGGTTCTGCGC
mm4_intergenic_Slc16a9/Gm7097/Gm9877|Fam13c_chr10_70381025 GAAGCCACTGTCAGAGCCAATAGGAATGCAATGGAGAAAAGAAGAAAAAAGGCATTCTGGGTATGGAAAGGGGAGGGAGG
AGGAGGAGTGGGTAGAAGG
AGAGGAAGAAGAGAGGCAGATGGCAGGGATAGGAC
mm4_intergenic_Iltifb|Gm9040_chr10_118300399 TGCCTACACCCTCCTTCTGAGAAGGAACATTAGTAGTCTAAAAGCCCACCTCACCTTCCCTGCCCCCCAGACCCACTCCT
CCTCCTG
CCCTTCAGCCACCCTTAAAAATGCAGTCCCTTTCCTCTACCAC
mm4_intergenic_Gpr55/4933407L21Rik|Gpr55_chr1_85960085 CAAGCAACAAGAGCAGAGGCTCAAAGCCAGTCAGCCAGGAGTAGGAGCTGCTCAAAGGTCACCTTGAACAAACACACTGA
ACAGGAACA
mm4_intergenic_Gm9312|Gm16372_chr12_24322482 TACTCAGAGGCTCCCATCCCTCCTGGCTCCAGTGATAGCCCAGGAGGAAGAGCGGTTAGAAGGAGGACTCCTCAGAGCAC
TACACAAGACTCTGAGAGATATTTGCCCTGGGAGCTCG
mm4_intergenic_Gm4419|Gm5633_chr12_21659219 ACACCCCTTCACCAACACAGAGATGTGTTACCTCACTGATTCCTGTGATAGCCCAGGAGGAAGAGCGGTTAGAAGGAGGA
CTCCTTAGAGCACTACATAAGACTCTGAAAGATATTTGCCCTGGGAGCTCG
mm4_intergenic_Gm22894|Ky_chr9_102396142 TAAGTGCAGGGACCCTCCAAGCCAGAGTCCCTAGAGCGGCTCCACCTCATGAACATCTACAGAGAGTGGCAGGGAAACTG
TGTGCAGTAAACCCCGAGA
mm4_intergenic_Gm22251|Zfp521_chr18_13387438 GGAGAAAGAGGCTGAGAGCTAGCTACATGCTAGGCTGATGTCCCTCATGAGGCTCCTCCTCCTGAAGGAGATCCCCTGAC
TGCT
mm4_intergenic_Gm15492|Ogg1_chr6_113326919 CTTTCCAAACCTCGAGGGCTGCGCAGGAGGAGGAGGCGCGCGCCGGGAGGTCCTGGGGGCGGGGCCACGTCCGGAGGAAG
AGGCGGGGCGTGCTGCACGGGAGAGCGGAGTGGGGCGTTTAGGGGTTTGGTGGTGTGC
mm4_intergenic_Cdc7|Tgfbr3_chr5_107084464 AGCCATACTTATACAAATGCTGTGAAAGTTGAAATAAAAATATCTAGGGTGTTGGGGGACCAACAGGAGGAGGAGAGGGA
GGAGGG
AGAGTGTTTACTGTCACATGAAAATGACTTTTGTGA

Input file for Crispresso

Crispresso, written by Luca Pinello, is a software package to quantify the Cas9-induced mutations on off- or on-targets.

Click here to download an amplicon input file for Crispresso. For each off-target, it includes the off-target name, its PCR amplicon and the guide sequence. Keep a copy of this file.

After sequencing, run CRISPRessoPooled. The tool will map the reads to the amplicons and analyse the mutations:
CRISPRessoPooled -r1 Reads1.fastq.gz -r2 Reads2.fastq.gz -f crisporAmplicons_mN1FkRligAThyqKv3eg3.txt --name MY_EXPERIMENT

Version 5.01 - Documentation  - Contact us - Downloads/local installation - Citation - License
CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.