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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314035_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314035_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intron_Gm14014_chr2_106579731_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intron_Gm14014_chr2_106579731_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intron_Atp2b2_chr6_113903415_F | TCGTCGGCAGCGTCCAGCTTGCTGGGCACATTAG | 59.5 | 0.39 |
| mm4_intron_Atp2b2_chr6_113903415_R | GTCTCGTGGGCTCGGGGGTCTAAGCATGAGGGGTT | 59.0 | 0.39 |
| mm4_intron_Bbs2_chr8_94088843_F | TCGTCGGCAGCGTCTCCGAAGCATCAGAAGTGGT | 59.0 | 0.36 |
| mm4_intron_Bbs2_chr8_94088843_R | GTCTCGTGGGCTCGGAGTGCTCACTGTGTGCATCT | 59.6 | 0.36 |
| mm4_intron_Pawr_chr10_108404877_F | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intron_Pawr_chr10_108404877_R | Primer3: not found at this Tm | N.d. | 0.36 |
| mm3_intergenic_Unc5d|4933433F19Rik_chr8_29277711_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm3_intergenic_Unc5d|4933433F19Rik_chr8_29277711_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Gm26005|Epcam_chr17_87508122_F | TCGTCGGCAGCGTCACCTGCTGCGAATAGACCTG | 59.8 | 0.32 |
| mm4_intergenic_Gm26005|Epcam_chr17_87508122_R | GTCTCGTGGGCTCGGGAGGGTTTGCTAAGTGGGCT | 59.9 | 0.32 |
| mm4_intron_Vmn2r91_chr17_18110892_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intron_Vmn2r91_chr17_18110892_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intron_Phf15_chr11_51855632_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intron_Phf15_chr11_51855632_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intron_Cldn15_chr5_136970859_F | TCGTCGGCAGCGTCCCCAAGCCTTTTGCCTTCTG | 59.6 | 0.31 |
| mm4_intron_Cldn15_chr5_136970859_R | GTCTCGTGGGCTCGGCCTTTCCCCAAAGCTGAGGG | 60.6 | 0.31 |
| mm4_intron_Gm14486_chr2_30660836_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intron_Gm14486_chr2_30660836_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intergenic_Crispld1|Crisp4_chr1_18058811_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intergenic_Crispld1|Crisp4_chr1_18058811_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_exon_Megf8_chr7_25346120_F | TCGTCGGCAGCGTCCTCTGCCCACCTCTCTACCT | 60.0 | 0.29 |
| mm4_exon_Megf8_chr7_25346120_R | GTCTCGTGGGCTCGGAGGACCTCCTGATCCACACC | 60.6 | 0.29 |
| mm4_intergenic_5430402E10Rik|Gm14750_chrX_77950626_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_5430402E10Rik|Gm14750_chrX_77950626_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Gxylt2|Gm15576_chr6_100711362_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Gxylt2|Gm15576_chr6_100711362_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Kcnh6_chr11_106012365_F | TCGTCGGCAGCGTCGGGGTAATCTAGGGGCCAGA | 60.1 | 0.27 |
| mm4_intron_Kcnh6_chr11_106012365_R | GTCTCGTGGGCTCGGTCGAGGAATGGCAAAGTTCCA | 59.9 | 0.27 |
| mm4_intergenic_4930569F06Rik|Suds3_chr5_116921074_F | TCGTCGGCAGCGTCCATTACCCAGCACATTCCCC | 58.5 | 0.26 |
| mm4_intergenic_4930569F06Rik|Suds3_chr5_116921074_R | GTCTCGTGGGCTCGGACTTCGAAGGACAGAGTGGA | 58.0 | 0.26 |
| mm4_exon_Myo18b_chr5_112785579_F | TCGTCGGCAGCGTCCTGTGGCCAGAGCTTACACA | 59.9 | 0.26 |
| mm4_exon_Myo18b_chr5_112785579_R | GTCTCGTGGGCTCGGCCAGCGGTTTGAGTTGGAGA | 60.2 | 0.26 |
| mm4_intergenic_Gm17033|4933406K04Rik_chr12_106684685_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm17033|4933406K04Rik_chr12_106684685_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Meig1_chr2_3409328_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_Meig1_chr2_3409328_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Rassf6|Cxcl5_chr5_90659358_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Rassf6|Cxcl5_chr5_90659358_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Sfrp1|Zmat4_chr8_23463720_F | TCGTCGGCAGCGTCGAGCAGCTCCCCTTCACAAG | 60.6 | 0.25 |
| mm4_intergenic_Sfrp1|Zmat4_chr8_23463720_R | GTCTCGTGGGCTCGGTCCTCTTCTCCAGGTCAGGG | 59.9 | 0.25 |
| mm4_intergenic_Rhpn1|Mafa_chr15_75732671_F | TCGTCGGCAGCGTCGGTTGTGGGCTGGATGAGAA | 59.9 | 0.22 |
| mm4_intergenic_Rhpn1|Mafa_chr15_75732671_R | GTCTCGTGGGCTCGGTCATCAGGTCCACTTGTGCC | 59.9 | 0.22 |
| mm4_intergenic_Gm15647|Bicc1_chr10_71106955_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm15647|Bicc1_chr10_71106955_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_exon_Rhbdf2_chr11_116604412_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm3_exon_Rhbdf2_chr11_116604412_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Chrna10|Nup98_chr7_102121773_F | TCGTCGGCAGCGTCCAGTGACATTAAAGACAAACCTGA | 57.3 | 0.19 |
| mm4_intergenic_Chrna10|Nup98_chr7_102121773_R | GTCTCGTGGGCTCGGTCCTTTGATGCGTCCTTCCA | 59.3 | 0.19 |
| mm4_intron_Spata13_chr14_60634387_F | TCGTCGGCAGCGTCCTTGGAGTGAGTGAGTGGCA | 59.6 | 0.19 |
| mm4_intron_Spata13_chr14_60634387_R | GTCTCGTGGGCTCGGTCATTCCCCGCCTCTCACTA | 60.0 | 0.19 |
| mm4_exon_Fxr2_chr11_69633212_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Fxr2_chr11_69633212_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Pfas|Ctc1_chr11_69012461_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Pfas|Ctc1_chr11_69012461_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Mdn1_chr4_32760824_F | TCGTCGGCAGCGTCATCCAGCCATGCAGAAGAGC | 60.4 | 0.17 |
| mm4_exon_Mdn1_chr4_32760824_R | GTCTCGTGGGCTCGGGGGCTGAAGACCTTGGTCAA | 59.8 | 0.17 |
| mm4_exon_Ezh1_chr11_101192684_F | TCGTCGGCAGCGTCGCTTGGCAGCTGAGGAAAAC | 60.0 | 0.17 |
| mm4_exon_Ezh1_chr11_101192684_R | GTCTCGTGGGCTCGGGGAAACAGAGGCGGTGAAGA | 59.9 | 0.17 |
| mm4_intron_Pla2g6_chr15_79304980_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Pla2g6_chr15_79304980_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm12490|Cd2_chr3_101272525_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm12490|Cd2_chr3_101272525_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_exon_Dok5_chr2_170731824_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_exon_Dok5_chr2_170731824_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Hmcn1_chr1_150979786_F | TCGTCGGCAGCGTCAGAAGAGCAAGAGAAGCGGC | 60.3 | 0.16 |
| mm4_intron_Hmcn1_chr1_150979786_R | GTCTCGTGGGCTCGGAAGGGCAGATTTCCAGCTCC | 60.0 | 0.16 |
| mm4_intergenic_Gm807|Zfp366_chr13_99159150_F | TCGTCGGCAGCGTCACAGCCTTCAGAGACACTGC | 59.9 | 0.16 |
| mm4_intergenic_Gm807|Zfp366_chr13_99159150_R | GTCTCGTGGGCTCGGGCCTTTGGGAGTGAGCAATG | 59.4 | 0.16 |
| mm4_intron_Mybpc1_chr10_88591780_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Mybpc1_chr10_88591780_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Zdhhc16|Mms19/Zdhhc16_chr19_41940762_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Zdhhc16|Mms19/Zdhhc16_chr19_41940762_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Zc3h13|Siah3_chr14_75433050_F | TCGTCGGCAGCGTCTTAGGACAGTCACTGGCAGC | 59.6 | 0.13 |
| mm4_intergenic_Zc3h13|Siah3_chr14_75433050_R | GTCTCGTGGGCTCGGCACCACGGGCATTTTCCTTC | 59.7 | 0.13 |
| mm4_intergenic_Ifnl3|Sycn_chr7_28527231_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Ifnl3|Sycn_chr7_28527231_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Csrnp1|Xirp1_chr9_119984668_F | TCGTCGGCAGCGTCTCTCTCCCGTTCTGACTGCA | 60.5 | 0.12 |
| mm4_intergenic_Csrnp1|Xirp1_chr9_119984668_R | GTCTCGTGGGCTCGGGGAGGGTCGAGCTTCCAC | 59.4 | 0.12 |
| mm4_exon_Olfr380_chr11_73454164_F | TCGTCGGCAGCGTCGGACAGGAACAGGGCAAAGA | 59.8 | 0.12 |
| mm4_exon_Olfr380_chr11_73454164_R | GTCTCGTGGGCTCGGTGGAGAGGAAGAATGATAAAGAACA | 57.7 | 0.12 |
| mm4_exon_Ubr5_chr15_38078517_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Ubr5_chr15_38078517_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Kctd17_chr15_78437247_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Kctd17_chr15_78437247_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Vsig1_chrX_140918271_F | TCGTCGGCAGCGTCTGCCCATGCTGAGGAAGAAC | 60.3 | 0.12 |
| mm4_intron_Vsig1_chrX_140918271_R | GTCTCGTGGGCTCGGGGGCTGTGATGGGGATATGG | 59.9 | 0.12 |
| mm4_intergenic_Gm12991|Ncmap_chr4_135379158_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm12991|Ncmap_chr4_135379158_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Txn1|Txndc8_chr4_57967340_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Txn1|Txndc8_chr4_57967340_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm11367|Mboat1_chr13_30136442_F | TCGTCGGCAGCGTCGTCTCCCGGTCTCCTGCC | 61.4 | 0.11 |
| mm4_intergenic_Gm11367|Mboat1_chr13_30136442_R | GTCTCGTGGGCTCGGACGTTCTGCTTCCCGCTC | 60.0 | 0.11 |
| mm3_intron_Thsd7b_chr1_130091351_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_intron_Thsd7b_chr1_130091351_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_intron_Tnni3k_chr3_154811496_F | TCGTCGGCAGCGTCTGATGCGGCCTTAGTGTGTT | 59.9 | 0.10 |
| mm3_intron_Tnni3k_chr3_154811496_R | GTCTCGTGGGCTCGGTGACAGGCGTGAGATCACAG | 59.7 | 0.10 |
| mm4_intergenic_Glt1d1|Tmem132d_chr5_127756868_F | TCGTCGGCAGCGTCAACAAATGTGGTGCCATGGC | 59.9 | 0.10 |
| mm4_intergenic_Glt1d1|Tmem132d_chr5_127756868_R | GTCTCGTGGGCTCGGTCTGGACCCATCTGCACATG | 59.7 | 0.10 |
| mm4_exon_Fam126a_chr5_23964406_F | TCGTCGGCAGCGTCGTAGCATCCCCACTGCTCTC | 59.8 | 0.10 |
| mm4_exon_Fam126a_chr5_23964406_R | GTCTCGTGGGCTCGGTGTGAGAGGACTGGGCTGTA | 59.8 | 0.10 |
| mm4_intergenic_1700017N19Rik|Gm26278_chr10_101524005_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_1700017N19Rik|Gm26278_chr10_101524005_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Tjp2|Fxn_chr19_24249566_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Tjp2|Fxn_chr19_24249566_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Foxd1_chr13_98354822_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Foxd1_chr13_98354822_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Insig1|En2_chr5_28138257_F | TCGTCGGCAGCGTCTGCATGACTTTTCCCCACCT | 59.5 | 0.09 |
| mm3_intergenic_Insig1|En2_chr5_28138257_R | GTCTCGTGGGCTCGGGGCCATGGTTGTATCCACCA | 60.0 | 0.09 |
| mm4_intergenic_Gm1862|Gm14591_chrX_53948056_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm1862|Gm14591_chrX_53948056_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_RP24-86O15.2|Gm10698_chr9_33426252_F | TCGTCGGCAGCGTCGCATCGTACTGGGTTGTGGA | 60.0 | 0.09 |
| mm4_intergenic_RP24-86O15.2|Gm10698_chr9_33426252_R | GTCTCGTGGGCTCGGTCCAATTGCTGAAGTGGGGA | 59.2 | 0.09 |
| mm4_intergenic_Gm23225|Gm24127_chr14_91619118_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm23225|Gm24127_chr14_91619118_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Anks1b_chr10_90832864_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Anks1b_chr10_90832864_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Mypn_chr10_63122526_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Mypn_chr10_63122526_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_2610307P16Rik|mmu-mir-6368_chr13_28698100_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_2610307P16Rik|mmu-mir-6368_chr13_28698100_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm25261|Gm831_chr4_131428225_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm25261|Gm831_chr4_131428225_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_6530411M01Rik|Gm8492_chr17_9173834_F | TCGTCGGCAGCGTCCCTCAGACTGTTCCGAAGCA | 59.6 | 0.08 |
| mm4_intergenic_6530411M01Rik|Gm8492_chr17_9173834_R | GTCTCGTGGGCTCGGAGCCGTTTCTCAGACCAGTT | 59.2 | 0.08 |
| mm4_intergenic_Mapk10|Ptpn13_chr5_103352208_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Mapk10|Ptpn13_chr5_103352208_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_exon_Incenp_chr19_9885741_F | TCGTCGGCAGCGTCTACCCATCTCTGGCCTGTGA | 59.9 | 0.07 |
| mm3_exon_Incenp_chr19_9885741_R | GTCTCGTGGGCTCGGGTTCTCACAGTGCTCCTGCT | 59.9 | 0.07 |
| mm4_intron_Prepl_chr17_85089247_F | TCGTCGGCAGCGTCACTGATTCAGTGAACCGCCC | 60.3 | 0.07 |
| mm4_intron_Prepl_chr17_85089247_R | GTCTCGTGGGCTCGGTGGTGAAATCCAATTGCTCCT | 57.8 | 0.07 |
| mm4_intergenic_Rap1a|Adora3_chr3_105806971_F | TCGTCGGCAGCGTCAATCCTACCCAGGCCATTTAC | 57.4 | 0.07 |
| mm4_intergenic_Rap1a|Adora3_chr3_105806971_R | GTCTCGTGGGCTCGGGTCGGTAGATACGGCGTCTG | 60.0 | 0.07 |
| mm4_intergenic_Npm1|Gm12115_chr11_33163227_F | TCGTCGGCAGCGTCGCCTTTCATCCTCACGCCTA | 59.8 | 0.07 |
| mm4_intergenic_Npm1|Gm12115_chr11_33163227_R | GTCTCGTGGGCTCGGCTTGGGCGACAGTAGTGGAG | 60.1 | 0.07 |
| mm4_intergenic_Gm25460|Gm5263_chr1_145842508_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm25460|Gm5263_chr1_145842508_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Zfp532_chr18_65656662_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Zfp532_chr18_65656662_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_4833427F10Rik_chr17_35776866_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_4833427F10Rik_chr17_35776866_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_n-R5s79|Gm4925/Arl1_chr10_88711494_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_n-R5s79|Gm4925/Arl1_chr10_88711494_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Ttc39c|Mir1948_chr18_12704592_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Ttc39c|Mir1948_chr18_12704592_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Espnl_chr1_91327564_F | TCGTCGGCAGCGTCTTCACAGACATCGGCCTGAC | 60.0 | 0.06 |
| mm4_exon_Espnl_chr1_91327564_R | GTCTCGTGGGCTCGGCCCTCCCCAAGAGTCTCTCA | 59.9 | 0.06 |
| mm4_intergenic_Gm6027|Gm4746_chrX_90326945_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm6027|Gm4746_chrX_90326945_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Lphn3_chr5_81062282_F | TCGTCGGCAGCGTCCAGCTTGTGTCCTGTTGCAG | 59.6 | 0.05 |
| mm4_intron_Lphn3_chr5_81062282_R | GTCTCGTGGGCTCGGGAACCCCTGAGAACTGTGGG | 59.9 | 0.05 |
| mm4_intergenic_Gm13375|Gm13377_chr2_21028402_F | TCGTCGGCAGCGTCTCCTGCTGGAGGAGCTGAAA | 60.8 | 0.05 |
| mm4_intergenic_Gm13375|Gm13377_chr2_21028402_R | GTCTCGTGGGCTCGGCTGGGGTCATGTGACATCCC | 60.1 | 0.05 |
| mm4_intergenic_Vps13c|Gm22382_chr9_68126396_F | TCGTCGGCAGCGTCAGCCAAGAGTGAATCATGCTGA | 60.0 | 0.05 |
| mm4_intergenic_Vps13c|Gm22382_chr9_68126396_R | GTCTCGTGGGCTCGGGCCCTTCTTGCTTCCCAGAA | 60.2 | 0.05 |
| mm4_exon_Rpusd3_chr6_113415625_F | TCGTCGGCAGCGTCTGCAGGGTCCGAGAGAAGTA | 59.9 | 0.05 |
| mm4_exon_Rpusd3_chr6_113415625_R | GTCTCGTGGGCTCGGCCGCCTAAGTCCTTCCCAAG | 60.1 | 0.05 |
| mm4_intergenic_Clec14a|Gm17529_chr12_58801268_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Clec14a|Gm17529_chr12_58801268_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_exon_Tmc5_chr7_118656784_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_exon_Tmc5_chr7_118656784_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm13266|Gm10849_chr2_14557243_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm13266|Gm10849_chr2_14557243_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intron_A830082K12Rik_chr13_78250814_F | TCGTCGGCAGCGTCTGACCCATGATGGTGTCTCT | 58.0 | 0.04 |
| mm3_intron_A830082K12Rik_chr13_78250814_R | GTCTCGTGGGCTCGGAAAGGTGTCCAATGGCCTCA | 59.5 | 0.04 |
| mm4_exon_Spata22/Olfr20_chr11_73353777_F | TCGTCGGCAGCGTCCCAGCATGGCAGAAGGGAA | 60.0 | 0.04 |
| mm4_exon_Spata22/Olfr20_chr11_73353777_R | GTCTCGTGGGCTCGGGGACGGTGGTGAGGTACATG | 60.1 | 0.04 |
| mm4_exon_Fam20a_chr11_109722142_F | TCGTCGGCAGCGTCGCGTCTCTTCCAAGGATGCT | 60.1 | 0.04 |
| mm4_exon_Fam20a_chr11_109722142_R | GTCTCGTGGGCTCGGTGTCAACTCTGCGTTCCCTC | 59.9 | 0.04 |
| mm4_intron_Zfp618_chr4_63068699_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Zfp618_chr4_63068699_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Gmpr_chr13_45530846_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Gmpr_chr13_45530846_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ifltd1_chr6_145613409_F | TCGTCGGCAGCGTCGTCCAAGGAGAGACCGGTTG | 60.0 | 0.03 |
| mm4_intron_Ifltd1_chr6_145613409_R | GTCTCGTGGGCTCGGAGAATGCCACCCACCTCATC | 59.7 | 0.03 |
| mm3_intron_Adam28_chr14_68632383_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intron_Adam28_chr14_68632383_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm9581|Arl6_chr16_59601134_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm9581|Arl6_chr16_59601134_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_9130401M01Rik/Zhx1_chr15_58076377_F | TCGTCGGCAGCGTCGAGAGACTCCGCTCCCTGAA | 60.6 | 0.02 |
| mm4_exon_9130401M01Rik/Zhx1_chr15_58076377_R | GTCTCGTGGGCTCGGGGAGTCCTCGAGTGGGGT | 59.9 | 0.02 |
| mm4_exon_Mrm1_chr11_84819152_F | TCGTCGGCAGCGTCCTGCAGCCCAGCCTTACC | 60.4 | 0.02 |
| mm4_exon_Mrm1_chr11_84819152_R | GTCTCGTGGGCTCGGAGCGGCTGGAACGTCTATTT | 59.7 | 0.02 |
| mm4_intergenic_Fam76b|Sesn3_chr9_13945093_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Fam76b|Sesn3_chr9_13945093_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Ggt5_chr10_75609200_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Ggt5_chr10_75609200_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Olfr376_chr11_73374782_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Olfr376_chr11_73374782_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Olfr1_chr11_73395974_F | TCGTCGGCAGCGTCGGACGGTGGTGAGGTACATG | 60.1 | 0.02 |
| mm4_exon_Olfr1_chr11_73395974_R | GTCTCGTGGGCTCGGAGACACTATGACAGAAAGGAACA | 57.1 | 0.02 |
| mm4_intron_Fam20a_chr11_109687493_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Fam20a_chr11_109687493_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Slc45a1_chr4_150636752_F | TCGTCGGCAGCGTCTGCTCCTAGAAACAGCAGGC | 60.0 | 0.02 |
| mm4_intron_Slc45a1_chr4_150636752_R | GTCTCGTGGGCTCGGCAGTGAGACACTCTGCCCAG | 60.0 | 0.02 |
| mm4_exon_Ube2r2_chr4_41136125_F | TCGTCGGCAGCGTCCAGATGACCAGCTCGCAGAA | 60.1 | 0.02 |
| mm4_exon_Ube2r2_chr4_41136125_R | GTCTCGTGGGCTCGGGCCACCTCCCAGTTGTAGAG | 59.7 | 0.02 |
| mm4_intergenic_Phlpp1|Bcl2/D630008O14Rik_chr1_106400614_F | TCGTCGGCAGCGTCCATTTGAGCTGGGCTTGCTG | 60.1 | 0.02 |
| mm4_intergenic_Phlpp1|Bcl2/D630008O14Rik_chr1_106400614_R | GTCTCGTGGGCTCGGTCTGAGGGTACTGGGGACTG | 59.9 | 0.02 |
| mm3_intergenic_Zswim6|Gm22118_chr13_107793645_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Zswim6|Gm22118_chr13_107793645_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Atxn10|Gm23517_chr15_85350981_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Atxn10|Gm23517_chr15_85350981_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Pias1_chr9_62886113_F | TCGTCGGCAGCGTCCCAGATTGAAGCCCAAGGGT | 59.9 | 0.01 |
| mm4_intron_Pias1_chr9_62886113_R | GTCTCGTGGGCTCGGTGTGATGCCACCAGACACTT | 59.5 | 0.01 |
| mm4_exon_Adrbk1_chr19_4305983_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Adrbk1_chr19_4305983_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Syne2|Esr2_chr12_76111247_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Syne2|Esr2_chr12_76111247_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Olfr23_chr11_73940270_F | TCGTCGGCAGCGTCTGCCTGGAAAGAACCAAACTG | 58.9 | 0.01 |
| mm4_exon_Olfr23_chr11_73940270_R | GTCTCGTGGGCTCGGGGCATAGAACAGGTGCTGGT | 60.0 | 0.01 |
| mm4_exon_Frrs1_chr3_116899140_F | TCGTCGGCAGCGTCGGCCGTCTTTGCACCATTTT | 59.9 | 0.01 |
| mm4_exon_Frrs1_chr3_116899140_R | GTCTCGTGGGCTCGGGGGCAAAACAAAAGCAACGC | 59.9 | 0.01 |
| mm4_intergenic_Gm24274|Gm24677_chr8_67277858_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm24274|Gm24677_chr8_67277858_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Aqp3_chr4_41096442_F | TCGTCGGCAGCGTCCGGGCACTATGTCCAGTCAG | 60.1 | 0.01 |
| mm4_intron_Aqp3_chr4_41096442_R | GTCTCGTGGGCTCGGGATTAGCCCCAAGGTGGTGG | 60.3 | 0.01 |
| mm4_exon_Nt5m_chr11_59848109_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Nt5m_chr11_59848109_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23630|Mir129-2_chr2_94233035_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23630|Mir129-2_chr2_94233035_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Oxct1_chr15_4135230_F | TCGTCGGCAGCGTCTTCGGCCTTTACAGAGAGCG | 60.1 | 0.00 |
| mm4_intron_Oxct1_chr15_4135230_R | GTCTCGTGGGCTCGGCTCAAGGGAAGAGCAGCCAA | 59.9 | 0.00 |
| mm3_intergenic_Foxn4|Myo1h_chr5_114295047_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Foxn4|Myo1h_chr5_114295047_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_intron_Atp2b2_chr6_113903415 |
CAGCTTGCTGGGCACATTAGCTTCCATTTTCAGATGAGCTTCCTGGAGGAGGAGCTGGTTGTTTGTGTAACGCAATGACG TTCTTGTAATCACTATCCTCAAAGAGGAGGGTCTAACCCCTCATGCTTAGACCC |
| mm4_intron_Bbs2_chr8_94088843 |
TCCGAAGCATCAGAAGTGGTTTATAAGATTACAGATGCGACTGAGGTCCCGCCAGCCTTGGCCGTCTCCTCCTCCAGGGT CTCAGAGATGCACACAGTGAGCACT |
| mm4_intergenic_Gm26005|Epcam_chr17_87508122 |
ACCTGCTGCGAATAGACCTGGAGGACTGGTTGTTAAGGGAACACCTCCTGGAACACTCACTTGCTCCCTCCATCAGCTCC TCCTCCCGGCCTGCCTCCCAGGGCCTGGGCTGTAACACAGCCCACTTAGCAAACCCTC |
| mm4_intron_Cldn15_chr5_136970859 |
CCCAAGCCTTTTGCCTTCTGCACCATGCACCATGCACTATGGGCCCCACCCAGAGAAGGGGTACAAGGTTCCTGAGAGTG TTTGGCAACCATCAAAACCAGGAGGAGGAGCCAGACGCTTCCCTCAGCTTTGGGGAAAGG |
| mm4_exon_Megf8_chr7_25346120 |
CTCTGCCCACCTCTCTACCTTTCTCCACAGGGTTACTTGTGTTGCACTGGGAAGCCAACGGCTCCTCCTCCTGGGGATTC AATGCTTCTGTGGGCTCTGCCCGGTGTGGATCAGGAGGTCCT |
| mm4_intron_Kcnh6_chr11_106012365 |
GGGGTAATCTAGGGGCCAGACAACTCCTCTTAATCAGAGGAGTTCGTGGTGAGAGGAGCGTCTTGGAGGAAGAATCAGGC AGAGACTGGCTCTTCCTCCAGGGACAGAGCAAAGACACTGGAACTTTGCCATTCCTCGA |
| mm4_intergenic_4930569F06Rik|Suds3_chr5_116921074 |
CATTACCCAGCACATTCCCCCATTACCTGGCTCCTCCCCCTTGCCCGACTCCTCCTCCTGGCACCTCCCCTTTTACTCTT TTACTTGCTACTCCTCAATCCACTCTGTCCTTCGAAGT |
| mm4_exon_Myo18b_chr5_112785579 |
CTGTGGCCAGAGCTTACACACCCGCTTCTGGCAGGACTGACGCACATCCTCCAGCTCTTCCTCCTGGTCCTCACGGTCTT TCTGATGCATCTGCTTCATCCTCTCAATCTCCAACTCAAACCGCTGG |
| mm4_intergenic_Sfrp1|Zmat4_chr8_23463720 |
GAGCAGCTCCCCTTCACAAGGTACCTTTCTCAGGAGAGAGTCGAGGACTGGCTCCTCCTCCGGGATGTTAGTGGAGCTGC CCTGACCTGGAGAAGAGGA |
| mm4_intergenic_Rhpn1|Mafa_chr15_75732671 |
GGTTGTGGGCTGGATGAGAACAGAGGAAAGGCTGTAAGACAACCCCAACCCCTGGCTCCTCCTCCAGGCATTCCTGTGGC TACCTGTGGGAGCCCAGAGAGGCACAAGTGGACCTGATGA |
| mm4_intergenic_Chrna10|Nup98_chr7_102121773 |
CAGTGACATTAAAGACAAACCTGATTTACTTTTCTCCCTCCACCGGCTCTTCCTACAGGCTACTCAGTGTCTGAATGCAT GCCATGGAAGGACGCATCAAAGGA |
| mm4_intron_Spata13_chr14_60634387 | CTTGGAGTGAGTGAGTGGCACGAAGGCATAACCTGGAGGTGGAGCGGGTGGAGGTAGTGAGAGGCGGGGAATGA |
| mm4_exon_Mdn1_chr4_32760824 |
ATCCAGCCATGCAGAAGAGCATTCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGG CCACCACTGATGGAGGTGGAGAAAGTGGTGTCAACCCTGTTGACCAAGGTCTTCAGCCC |
| mm4_exon_Ezh1_chr11_101192684 |
GCTTGGCAGCTGAGGAAAACTCAAGCCCTGGCATTATCCCACACCCACCATCTCCTCCTCCTGGCATGGGAGCGCAGCTT CTTACATCTGAACTCTCCTGGGAGACCAGGTCTTCACCGCCTCTGTTTCC |
| mm4_intron_Hmcn1_chr1_150979786 |
AGAAGAGCAAGAGAAGCGGCCCTGGAGGAGGAGCTGGCCCTTGCGAGTCAGAAACAATCATGAAGCAATCGGCTAGAGGT GAAATGAAGAGGACGTCAGAAAGAGGAGCTGGAAATCTGCCCTT |
| mm4_intergenic_Gm807|Zfp366_chr13_99159150 |
ACAGCCTTCAGAGACACTGCTCTGCCAGTGCACTGCTGTCCTGGGGGAGGAGCCAGTTGCTGTTTGTCATCTTGTGTAAC CTTCAAGATTTGCATCTTCCTAGAGTTGAACCATTGCTCACTCCCAAAGGC |
| mm4_intergenic_Zc3h13|Siah3_chr14_75433050 |
TTAGGACAGTCACTGGCAGCTGCCAGCCAATTGCCTGGAGTGCTTAGACCATCACAAAATTGGATGGATTCCGACTCTAG CATCAATCAGCTCCTTCTCCGGGAGGAAGGAAAATGCCCGTGGTG |
| mm4_intergenic_Csrnp1|Xirp1_chr9_119984668 |
TCTCTCCCGTTCTGACTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGAAGCTCGACCCTCC |
| mm4_exon_Olfr380_chr11_73454164 |
GGACAGGAACAGGGCAAAGAACAGTTGCTGGTGCTCTGCAGGGATCGGCAGGCCCAGGAGGAGGAACTGGTTGAAGAGAG TTTGGTTGTTCTTTATCATTCTTCCTCTCCA |
| mm4_intron_Vsig1_chrX_140918271 |
TGCCCATGCTGAGGAAGAACGGGCCTCCTGGAGGAGGAGGAGGAGGATGAAAAACACTTGCCAAAACACAGTTCCTTGTC TTGTTTTCCCATCCTGTTTCAGTTTACCTACCCTTGCCATATCCCCATCACAGCCC |
| mm4_intergenic_Gm11367|Mboat1_chr13_30136442 |
GTCTCCCGGTCTCCTGCCCCGGGCCGGGCTCCCGGGGATCCGCGCCCATCTCTGCCCGGCTCCTCCTCCGGGGCGTCCCC GGCTGCTGGCCAATGGGCGGCGGGCGGTGCGGAGCGGGAAGCAGAACGT |
| mm3_intron_Tnni3k_chr3_154811496 |
TGATGCGGCCTTAGTGTGTTTCTGAGTCCTAGGGTGACAGCTCAAGGAGTGAGCAAATCAGAATGCCCTGCATTCACAAT CAAGCGGCTCCTCCTCCCAGGCACCTCTGCTGTGATCTCACGCCTGTCA |
| mm4_intergenic_Glt1d1|Tmem132d_chr5_127756868 |
AACAAATGTGGTGCCATGGCAAGCTGCAGAGACACAAACCTGCCAGGAGGGGGAGCCAGTTGCTGCCATGTGCAGATGGG TCCAGA |
| mm4_exon_Fam126a_chr5_23964406 |
GTAGCATCCCCACTGCTCTCACGTGAGGCTGTTTTCTCACATGCCTGTGGAGCAGCATGGCTTCATGGACTCGCTCCTCC CCCTGGGCTCTACAGCCCAGTCCTCTCACA |
| mm3_intergenic_Insig1|En2_chr5_28138257 |
TGCATGACTTTTCCCCACCTCTGTAGAATGCAGCTCCTGGTTCTACAACGATAGGCTCCTCCTCCTAGGGACCTCCTTAT TCATGCCTCACTGTGGTGGATACAACCATGGCC |
| mm4_intergenic_RP24-86O15.2|Gm10698_chr9_33426252 |
GCATCGTACTGGGTTGTGGACTCAGAGAAAAGGTTCTGAACAATGTAGGTTTTTACCAGAGTAAAATGTCAATTAAAGAC CTATAAATTCACTGCTGCTTCCACCCGTTCCTCCTCCAGGTCCCCACTTCAGCAATTGGA |
| mm4_intergenic_6530411M01Rik|Gm8492_chr17_9173834 |
CCTCAGACTGTTCCGAAGCACGGAGTCGGGGAAATAGATTAAAACCTGGAGGCTGTGAAGCCCCTGGAGGAAGACAGGGT CGATGCTCCACAACTGGTCTGAGAAACGGCT |
| mm3_exon_Incenp_chr19_9885741 |
TACCCATCTCTGGCCTGTGACCTTACCTCTTGCTCCTCTTCTGCCTCCTCAGGTTCGGCCACCTCGACAGGCTCCTGCTC CAGGCTGAAAGCAAAGCAGGAGCACTGTGAGAAC |
| mm4_intron_Prepl_chr17_85089247 | ACTGATTCAGTGAACCGCCCAACTGACTGGCTCCTCCTCCTAGAGGAGCAATTGGATTTCACCA |
| mm4_intergenic_Rap1a|Adora3_chr3_105806971 |
AATCCTACCCAGGCCATTTACCACCCACCTGCTCCTCCCCCTGGAGATTGTTTCATGCCTTTGAAGTAAAAGTCAGCAGC AGATTGGATTTTTAAAAACTGCTTCTTCACCGCAGACGCCGTATCTACCGAC |
| mm4_intergenic_Npm1|Gm12115_chr11_33163227 |
GCCTTTCATCCTCACGCCTAGGTACCTCGCCCCCCTCCTCCTCCAGGTGCTTGGCGGGCTCTCACTGCGCACGCGCGTTC GTCTCTGGCCCCGTCCCTCCACTACTGTCGCCCAAG |
| mm4_exon_Espnl_chr1_91327564 |
TTCACAGACATCGGCCTGACAGCACGGGATAATGAAGGAGCCACTGCCCTGCACTTTGCAGCTCGGGGGGGCCACACACC TATTCTCGACCGGCTCCTGCTCATGGGTGCCCCCATCATGAGAGACTCTTGGGGAGGG |
| mm4_intron_Lphn3_chr5_81062282 |
CAGCTTGTGTCCTGTTGCAGGAAGCAAACAACTTCTGGATAGAAAGGAAAATAAATAAGCAAACATCGTCTGGCTCCTTC TCTTGGAGGATTAATCTTCCATTACACTTCTTCCCACAGTTCTCAGGGGTTC |
| mm4_intergenic_Gm13375|Gm13377_chr2_21028402 |
TCCTGCTGGAGGAGCTGAAAGAAATGTGAAAAGGACGATATAGTTACAGAATATATTAAGCTTCTGGCTAGGATGGTATC AAATGACCAGGAGGAGTATCCTGTAGATGCTGTTTATATAGGGATGTCACATGACCCCAG |
| mm4_intergenic_Vps13c|Gm22382_chr9_68126396 |
AGCCAAGAGTGAATCATGCTGATAAGCTGTATAGGAGATGATTATCCAGGAGGATGAGCAGGTAGATTGGGATGTTTATA ATGCCATATGACAAAAGGTTAGCTCACAGCAGAAGGATCTTCTGGGAAGCAAGAAGGGC |
| mm4_exon_Rpusd3_chr6_113415625 |
TGCAGGGTCCGAGAGAAGTAAGGGGGCAGGGGTGCCAGAAGTTCACTAGGGGGGTCCCTGGATCCGGTGCCTGGGAGGAG GAGGCGGTGAAGGTGCAGGTGCAAAGGCATCTGGGCCACTTGGGAAGGACTTAGGCGG |
| mm3_intron_A830082K12Rik_chr13_78250814 |
TGACCCATGATGGTGTCTCTTTATAAGAACCCAGTCTCTGGGCCACCAGTTCTGGAGGAGGAGCCGTTTGATAGAGAGTA TGACGTTTAGGACAAACATATTTATGAGGCCATTGGACACCTTT |
| mm4_exon_Spata22/Olfr20_chr11_73353777 |
CCAGCATGGCAGAAGGGAACCAAACTGTCATCTTCCAGTTCCTCCTCCTGGGCCTGCCCATCCCCACAGAGCATCAGCAG CTGTACTATGCCCTGTTCCTGCTCATGTACCTCACCACCGTCC |
| mm4_exon_Fam20a_chr11_109722142 |
GCGTCTCTTCCAAGGATGCTGTCTCTCCGCAGCTGCTGAGACAGATCCAGCGGCTCCTCCTGCAGGCGGCAGGGACTCCT GTGCCCCGGGCTGGCAGGAGCGGAGGGAACGCAGAGTTGACA |
| mm4_intron_Ifltd1_chr6_145613409 |
GTCCAAGGAGAGACCGGTTGGAGTAGGCTGTCCCAGGAGAGGGAGCAGGTCAATGCACTGTGTTGTGAATTTTAAAGAAA ATTGTATGAATATGGATGAGGTGGGTGGCATTCT |
| mm4_exon_9130401M01Rik/Zhx1_chr15_58076377 |
GAGAGACTCCGCTCCCTGAACCCACAAGGGCCGCGAGGAGGAGCCAGCCGAGGCGGGGACGAGCCGGGCACCCCACTCGA GGACTCC |
| mm4_exon_Mrm1_chr11_84819152 |
CTGCAGCCCAGCCTTACCGGCCTGGAGCAGGAGCCGGGCCACGCGCCGACGGGCAGCCCGCAAGGCCAGGAGGCATGGGG ACAAGCCAAATAGACGTTCCAGCCGCT |
| mm4_exon_Olfr1_chr11_73395974 |
GGACGGTGGTGAGGTACATGACCAGGAACAGGGCATAGAACAGTTGCTGGTGCTCTGGTGGAATGGGTAGGCCCAGGAGG AGGAACTGGGAGATGACAGTTTTGTTCCTTTCTGTCATAGTGTCT |
| mm4_intron_Slc45a1_chr4_150636752 |
TGCTCCTAGAAACAGCAGGCTGAACACCCTGGCGACTTGGACACTCCTCCCCAGGAGGAGCAGCCGCTCACTGCAGAACG CTCTCCAGGAGAGGCTCAGCCAGGCGGGTGCATCTGTGGCCTGGGCAGAGTGTCTCACTG |
| mm4_exon_Ube2r2_chr4_41136125 |
CAGATGACCAGCTCGCAGAAAGCCCTGATGCTTGAGCTGAAATCCCTGCAGGAGGAACCGGTGGAGGGCTTCCGGATCAC CCTGGTGGATGAGTCCGACCTCTACAACTGGGAGGTGGC |
| mm4_intergenic_Phlpp1|Bcl2/D630008O14Rik_chr1_106400614 |
CATTTGAGCTGGGCTTGCTGTAGTCCATCCACCTCCTGCTCCTCCAGGCAGGCTCCATCCTACAGTCCCCAGTACCCTCA GA |
| mm4_intron_Pias1_chr9_62886113 |
CCAGATTGAAGCCCAAGGGTGTCTGTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAGTGTCTGGTGGCATCACA |
| mm4_exon_Olfr23_chr11_73940270 |
TGCCTGGAAAGAACCAAACTGTCATCTCCCGGTTCATCCTCCTGGGCCTGCCCATACCACCAGAGCACCAGCACCTGTTC TATGCC |
| mm4_exon_Frrs1_chr3_116899140 |
GGCCGTCTTTGCACCATTTTCTCACCTGCCGGCTCCTCCTGCAGGTGCATCGGATGCTCATGGTAGCTACCTCCCTGCTC ACCTGCGTTGCTTTTGTTTTGCCC |
| mm4_intron_Aqp3_chr4_41096442 |
CGGGCACTATGTCCAGTCAGACCCTGGCCTGAGCTCTTTGCCTGAGGCCCAGACTTGGCTCCGTGCCAAGGGGCCTCCGG AGGAGGAGGCTGTCAAAGCCAGTTCCACCACCTTGGGGCTAATC |
| mm4_intron_Oxct1_chr15_4135230 |
TTCGGCCTTTACAGAGAGCGGACGCTTCACCAGCACGAGGAGCCTGTCGAAGAGACAGGGCCTCAGAACCCTGCAGCTTC TTCCCAGGGAACTGGCTGGGTCCATCCATTGTCTTAGTTGGCTGCTCTTCCCTTGAG |