← return to the list of all guides
Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314014_F | TCGTCGGCAGCGTCAACCGCCAGAGAAGATGGTG | 60.0 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314014_R | GTCTCGTGGGCTCGGCTGCCTGCTAGTCCATCGAC | 60.2 | 1.00 |
| mm4_intron_Ttc4_chr4_106663284_F | Primer3: not found at this Tm | N.d. | 0.68 |
| mm4_intron_Ttc4_chr4_106663284_R | Primer3: not found at this Tm | N.d. | 0.68 |
| mm4_intergenic_Cox4i1|Gm24239_chr8_120696610_F | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intergenic_Cox4i1|Gm24239_chr8_120696610_R | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intron_Spag17_chr3_100044455_F | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intron_Spag17_chr3_100044455_R | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intron_Cacna1b_chr2_24728433_F | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intron_Cacna1b_chr2_24728433_R | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intron_4930401O12Rik_chr13_31218867_F | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intron_4930401O12Rik_chr13_31218867_R | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intergenic_Gm9621|Gm24200_chr9_94235438_F | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intergenic_Gm9621|Gm24200_chr9_94235438_R | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intergenic_Cacna1b|Ehmt1_chr2_24784636_F | Primer3: not found at this Tm | N.d. | 0.54 |
| mm4_intergenic_Cacna1b|Ehmt1_chr2_24784636_R | Primer3: not found at this Tm | N.d. | 0.54 |
| mm3_exon_Obscn_chr11_59135720_F | TCGTCGGCAGCGTCTATGCCCTCTGCGCGCAT | 62.2 | 0.39 |
| mm3_exon_Obscn_chr11_59135720_R | GTCTCGTGGGCTCGGCTCTGGTGGTGGACTCGGA | 60.6 | 0.39 |
| mm4_intron_Adipoq_chr16_23147933_F | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intron_Adipoq_chr16_23147933_R | Primer3: not found at this Tm | N.d. | 0.38 |
| mm3_intergenic_Gm11523|Cdk5rap3_chr11_96886125_F | TCGTCGGCAGCGTCTTCGCTTCAGCCTCACAAGG | 60.6 | 0.30 |
| mm3_intergenic_Gm11523|Cdk5rap3_chr11_96886125_R | GTCTCGTGGGCTCGGCTGCCTGCAGTTACCAAGCT | 60.6 | 0.30 |
| mm4_intergenic_Mir3072/Mirg|Dio3os_chr12_109886811_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Mir3072/Mirg|Dio3os_chr12_109886811_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Tjp1_chr7_65370530_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intron_Tjp1_chr7_65370530_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intron_Shc3_chr13_51469116_F | TCGTCGGCAGCGTCGAAGTGGTTTGTGCTGGCTG | 59.9 | 0.26 |
| mm4_intron_Shc3_chr13_51469116_R | GTCTCGTGGGCTCGGTCTGAAGGCTTGGAGAGTGC | 59.6 | 0.26 |
| mm4_intergenic_Ifng|Dyrk2/4932442E05Rik_chr10_118805201_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Ifng|Dyrk2/4932442E05Rik_chr10_118805201_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_Gramd1b_chr9_40398285_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_Gramd1b_chr9_40398285_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm3_intergenic_Mpp5|Gm25225_chr12_78749159_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm3_intergenic_Mpp5|Gm25225_chr12_78749159_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm2_intergenic_Crhr2|Inmt_chr6_55142201_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm2_intergenic_Crhr2|Inmt_chr6_55142201_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Dis3l2|Alppl2_chr1_87056406_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Dis3l2|Alppl2_chr1_87056406_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Tsc22d2_chr3_58416019_F | TCGTCGGCAGCGTCCCGAACCTCATCCTGGATGG | 59.8 | 0.21 |
| mm4_exon_Tsc22d2_chr3_58416019_R | GTCTCGTGGGCTCGGGGAGTGGACACCGAAGCG | 60.4 | 0.21 |
| mm4_exon_Zbtb7a_chr10_81144245_F | TCGTCGGCAGCGTCTGGACCAGCAGAACGTGTAC | 59.9 | 0.21 |
| mm4_exon_Zbtb7a_chr10_81144245_R | GTCTCGTGGGCTCGGCTCAGGATGTCGCCCACATT | 60.1 | 0.21 |
| mm3_exon_Hmcn1_chr1_150993403_F | TCGTCGGCAGCGTCGCAGGGAGCTGCGAGTAG | 59.8 | 0.21 |
| mm3_exon_Hmcn1_chr1_150993403_R | GTCTCGTGGGCTCGGAAAGTTGGGAGGCTCAGTCG | 59.9 | 0.21 |
| mm4_intergenic_mmu-mir-6380|H2afz_chr3_137846774_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_mmu-mir-6380|H2afz_chr3_137846774_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_exon_Ltb_chr17_35196232_F | TCGTCGGCAGCGTCTGTGAATCGTGATGTCCGGG | 60.1 | 0.21 |
| mm4_exon_Ltb_chr17_35196232_R | GTCTCGTGGGCTCGGTTCCGTGAAGACACTGGCAA | 59.8 | 0.21 |
| mm4_intron_Pmfbp1_chr8_109523044_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Pmfbp1_chr8_109523044_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Crtc1_chr8_70420527_F | TCGTCGGCAGCGTCGGTCAAAGCCACAGCAAAGG | 59.9 | 0.15 |
| mm4_intron_Crtc1_chr8_70420527_R | GTCTCGTGGGCTCGGGCCTCTTTCCTGCGACTGT | 60.0 | 0.15 |
| mm3_exon_Gm12963_chr4_130047705_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_exon_Gm12963_chr4_130047705_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Alpk3_chr7_81094191_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Alpk3_chr7_81094191_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Aldh1a2_chr9_71215884_F | TCGTCGGCAGCGTCCCCATGACTTCCAGCGAGAT | 59.5 | 0.13 |
| mm4_exon_Aldh1a2_chr9_71215884_R | GTCTCGTGGGCTCGGACTTGATCTCGAGGTTGGGC | 59.7 | 0.13 |
| mm4_intron_Dlg1_chr16_31833903_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Dlg1_chr16_31833903_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Adamts6|Cwc27_chr13_104510295_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Adamts6|Cwc27_chr13_104510295_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_exon_Naa25/Erp29_chr5_121440553_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_exon_Naa25/Erp29_chr5_121440553_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Tprg_chr16_25368085_F | TCGTCGGCAGCGTCGCTCCAGCAACATCTCCTGT | 60.0 | 0.12 |
| mm4_intron_Tprg_chr16_25368085_R | GTCTCGTGGGCTCGGTAACAGCATCCACACCTCCC | 59.3 | 0.12 |
| mm4_exon_Phf15_chr11_51857442_F | TCGTCGGCAGCGTCGCTCCCGAAGCCAGGAGC | 62.8 | 0.12 |
| mm4_exon_Phf15_chr11_51857442_R | GTCTCGTGGGCTCGGCTGACCATCTTCCCAGCAGG | 60.1 | 0.12 |
| mm4_intergenic_Gm25199|Syt6_chr3_103575160_F | TCGTCGGCAGCGTCGAACCTGCCCGGACTCAG | 59.7 | 0.12 |
| mm4_intergenic_Gm25199|Syt6_chr3_103575160_R | GTCTCGTGGGCTCGGGAGGCTCCGCTCTGCTTTTA | 60.1 | 0.12 |
| mm4_exon_Cnnm1_chr19_43440895_F | TCGTCGGCAGCGTCGACGTGGAGGTCCTGGGG | 61.3 | 0.12 |
| mm4_exon_Cnnm1_chr19_43440895_R | GTCTCGTGGGCTCGGCACCCGCACCTGGACCAG | 62.7 | 0.12 |
| mm4_intergenic_Actrt2|Gm13113_chr4_154701181_F | TCGTCGGCAGCGTCCTTCCCAGAGAGACCGCAAG | 60.1 | 0.11 |
| mm4_intergenic_Actrt2|Gm13113_chr4_154701181_R | GTCTCGTGGGCTCGGATCGCTCACACACCAAGGAG | 60.0 | 0.11 |
| mm4_intergenic_Zg16|Gm22747_chr7_127055684_F | TCGTCGGCAGCGTCCCCCAGGCAACACTTCATTTC | 59.7 | 0.11 |
| mm4_intergenic_Zg16|Gm22747_chr7_127055684_R | GTCTCGTGGGCTCGGACCAATGGGAAATTTAAACGAGAT | 57.1 | 0.11 |
| mm4_exon_Gm10760/Mctp1_chr13_76384444_F | TCGTCGGCAGCGTCCTCCGAGCTGGCCTGAAG | 59.8 | 0.11 |
| mm4_exon_Gm10760/Mctp1_chr13_76384444_R | GTCTCGTGGGCTCGGTTGCCTTTCCTCCTCCCTCT | 60.1 | 0.11 |
| mm4_intergenic_Zic1|Zic4/Zic1_chr9_91361962_F | TCGTCGGCAGCGTCAATGGGACTTGGGCTTGGTT | 59.8 | 0.11 |
| mm4_intergenic_Zic1|Zic4/Zic1_chr9_91361962_R | GTCTCGTGGGCTCGGAAAAGCAGCCTCCTCCTTCC | 59.9 | 0.11 |
| mm4_exon_Rd3/Gm26670_chr1_191985444_F | TCGTCGGCAGCGTCACCATCTCGGAGGATGTGGA | 60.0 | 0.11 |
| mm4_exon_Rd3/Gm26670_chr1_191985444_R | GTCTCGTGGGCTCGGCCAGCCCGTTATTCCTCCTG | 60.1 | 0.11 |
| mm4_intergenic_Gm14513|Gm26314_chrX_11714054_F | TCGTCGGCAGCGTCGGGAGCATTTGTTGAAGCGA | 59.1 | 0.09 |
| mm4_intergenic_Gm14513|Gm26314_chrX_11714054_R | GTCTCGTGGGCTCGGGGGCCTTTCTGTGTTTCAGG | 59.0 | 0.09 |
| mm4_exon_Mtss1l_chr8_110721568_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Mtss1l_chr8_110721568_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sez6_chr11_77931462_F | TCGTCGGCAGCGTCTCCACTCCAGGCGTCTAGG | 60.3 | 0.09 |
| mm4_intron_Sez6_chr11_77931462_R | GTCTCGTGGGCTCGGTCGAGCGAAGTTTGGAGACC | 60.0 | 0.09 |
| mm4_intergenic_Cops8|Gm9991_chr1_90644089_F | TCGTCGGCAGCGTCGTCTTGCGCAGTCCAATGTG | 60.1 | 0.08 |
| mm4_intergenic_Cops8|Gm9991_chr1_90644089_R | GTCTCGTGGGCTCGGCCCCTGGATTGCATACTCCC | 59.8 | 0.08 |
| mm4_intron_Rxra_chr2_27677639_F | TCGTCGGCAGCGTCGTGGCGGTACCGAGAGTTAG | 59.9 | 0.08 |
| mm4_intron_Rxra_chr2_27677639_R | GTCTCGTGGGCTCGGGCTCCTCGGCAAGTCAGAG | 60.1 | 0.08 |
| mm4_intergenic_Smyd2|Prox1_chr1_189922419_F | TCGTCGGCAGCGTCGAACTCGGCGCTCTGCTC | 60.8 | 0.08 |
| mm4_intergenic_Smyd2|Prox1_chr1_189922419_R | GTCTCGTGGGCTCGGCTCCAGCCTTCCTCACCG | 59.4 | 0.08 |
| mm4_intron_Arhgef37_chr18_61499466_F | TCGTCGGCAGCGTCGGTTTGCCTTGCTTGCACAG | 60.8 | 0.08 |
| mm4_intron_Arhgef37_chr18_61499466_R | GTCTCGTGGGCTCGGTGGTGCCAGTCAGCTTACAG | 59.9 | 0.08 |
| mm4_intron_Trio_chr15_27856468_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Trio_chr15_27856468_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Gm7701_chr18_24258301_F | TCGTCGGCAGCGTCGGTTGTTCAGGCCCATGAGA | 59.9 | 0.07 |
| mm4_exon_Gm7701_chr18_24258301_R | GTCTCGTGGGCTCGGCGGAGGTCTCATCTGTCACG | 59.9 | 0.07 |
| mm4_intergenic_Krtap5-5|Gm2431_chr7_142230432_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Krtap5-5|Gm2431_chr7_142230432_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Slc25a36_chr9_97076360_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Slc25a36_chr9_97076360_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intron_Jarid2_chr13_44730342_F | TCGTCGGCAGCGTCCTCCAACCCCTCGCTGAC | 59.7 | 0.07 |
| mm3_intron_Jarid2_chr13_44730342_R | GTCTCGTGGGCTCGGCGCCTGTGGAATCGAGGAAT | 60.1 | 0.07 |
| mm4_intron_C1qtnf1_chr11_118428804_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_C1qtnf1_chr11_118428804_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Zc3h8_chr2_128943786_F | TCGTCGGCAGCGTCCTGACTTCCACCCCACTTCC | 59.9 | 0.07 |
| mm4_intron_Zc3h8_chr2_128943786_R | GTCTCGTGGGCTCGGGTGATCCCCACGTTCTGGTC | 60.3 | 0.07 |
| mm4_exon_Setd8_chr5_124445495_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Setd8_chr5_124445495_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Ndnl2_chr7_64872848_F | TCGTCGGCAGCGTCGACGTGCTGGGTCCTTCC | 60.0 | 0.07 |
| mm4_exon_Ndnl2_chr7_64872848_R | GTCTCGTGGGCTCGGGACATGTTGCAGAAGCCGAG | 59.5 | 0.07 |
| mm4_intron_Gm11762_chr11_119565558_F | TCGTCGGCAGCGTCATGAAGCTGCTGTCCCTCAC | 60.0 | 0.07 |
| mm4_intron_Gm11762_chr11_119565558_R | GTCTCGTGGGCTCGGGGCAGACCTCATGCTTCTGT | 60.0 | 0.07 |
| mm4_intergenic_Capn9|2310022B05Rik_chr8_124631984_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Capn9|2310022B05Rik_chr8_124631984_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_exon_Clu_chr14_65974705_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_exon_Clu_chr14_65974705_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Trim41_chr11_48816993_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Trim41_chr11_48816993_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_B230219D22Rik_chr13_55693577_F | TCGTCGGCAGCGTCAGTCTCGCCCTGGAGCTG | 61.0 | 0.06 |
| mm4_intron_B230219D22Rik_chr13_55693577_R | GTCTCGTGGGCTCGGTCTTCTCTGCGCTCCTTAGC | 59.5 | 0.06 |
| mm4_intergenic_Fam49b|Gm25628_chr15_63997974_F | TCGTCGGCAGCGTCCTCGTCACGGCGCTAGGG | 62.5 | 0.06 |
| mm4_intergenic_Fam49b|Gm25628_chr15_63997974_R | GTCTCGTGGGCTCGGCTGTCGCCTGGCTCTTCG | 60.5 | 0.06 |
| mm4_intergenic_Lzts3|Ddrgk1_chr2_130642834_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Lzts3|Ddrgk1_chr2_130642834_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Rhobtb3|Gm6311_chr13_75943948_F | TCGTCGGCAGCGTCTCGGAAGGCTGAAACCTGAG | 59.6 | 0.05 |
| mm4_intergenic_Rhobtb3|Gm6311_chr13_75943948_R | GTCTCGTGGGCTCGGACACACTTTCTGCGAAGGCT | 60.1 | 0.05 |
| mm4_intron_Nek7_chr1_138618062_F | TCGTCGGCAGCGTCGGCCCACATCCTCAGACAAA | 59.9 | 0.05 |
| mm4_intron_Nek7_chr1_138618062_R | GTCTCGTGGGCTCGGGGAGGGCGGGTACTTCCTA | 60.0 | 0.05 |
| mm4_intron_Ehd2_chr7_15955204_F | TCGTCGGCAGCGTCGGGAGGCGTGGCTTGTTATT | 60.6 | 0.04 |
| mm4_intron_Ehd2_chr7_15955204_R | GTCTCGTGGGCTCGGCGCCTGCCTCTTTCTGCTAT | 60.1 | 0.04 |
| mm4_intergenic_Klf14|Mir29a_chr6_30959067_F | TCGTCGGCAGCGTCTGGCGAGCCAGGTAATTTCA | 59.6 | 0.04 |
| mm4_intergenic_Klf14|Mir29a_chr6_30959067_R | GTCTCGTGGGCTCGGTAGGACTCTGCCTGACACCC | 60.6 | 0.04 |
| mm4_intergenic_Prmt6|Gm26076_chr3_110364511_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Prmt6|Gm26076_chr3_110364511_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gli2|mmu-mir-6346_chr1_118927093_F | TCGTCGGCAGCGTCTGCAGGTTACAGGAGCAAGG | 59.9 | 0.04 |
| mm4_intergenic_Gli2|mmu-mir-6346_chr1_118927093_R | GTCTCGTGGGCTCGGAATGCCCACCAGGAGAAAGG | 59.9 | 0.04 |
| mm4_intron_Sirpa_chr2_129594922_F | TCGTCGGCAGCGTCGCTTCCTCCTGCCTTACCAG | 60.1 | 0.04 |
| mm4_intron_Sirpa_chr2_129594922_R | GTCTCGTGGGCTCGGAATCTGGGCCCAGTGTTCTG | 59.9 | 0.04 |
| mm4_intergenic_Tcte2|Gm24867_chr17_13667284_F | TCGTCGGCAGCGTCCTGAGAACACAGAGGCTGGG | 60.0 | 0.03 |
| mm4_intergenic_Tcte2|Gm24867_chr17_13667284_R | GTCTCGTGGGCTCGGAAATCAAGGCTGGTCTGGGG | 59.9 | 0.03 |
| mm4_intergenic_Zeb2/Gm13476/ZEB2_AS1_3/ZEB2_AS1_4|Zeb2_chr2_45117167_F | TCGTCGGCAGCGTCGAACTTCGCTCCCTCTGTCG | 60.4 | 0.03 |
| mm4_intergenic_Zeb2/Gm13476/ZEB2_AS1_3/ZEB2_AS1_4|Zeb2_chr2_45117167_R | GTCTCGTGGGCTCGGGCGAGCCAGGTCAGCTGA | 62.0 | 0.03 |
| mm4_intergenic_Gm8614|Gm23335_chr18_55842307_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm8614|Gm23335_chr18_55842307_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Glcci1/A430035B10Rik_chr6_8509977_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Glcci1/A430035B10Rik_chr6_8509977_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Gm16126_chr9_95646579_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Gm16126_chr9_95646579_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Sdccag8|Gm15423_chr1_176927625_F | TCGTCGGCAGCGTCTGTGCAATGAACATCGACGC | 59.8 | 0.03 |
| mm4_intergenic_Sdccag8|Gm15423_chr1_176927625_R | GTCTCGTGGGCTCGGACGCTCTTGGTTTCCTCTGG | 59.9 | 0.03 |
| mm4_intron_Gtf2a1_chr12_91589290_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Gtf2a1_chr12_91589290_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Zfr_chr15_12118808_F | TCGTCGGCAGCGTCATGGAGAGAGAGTGAGCCGA | 59.7 | 0.03 |
| mm4_intron_Zfr_chr15_12118808_R | GTCTCGTGGGCTCGGGGTACCGACAAAGACCTGCT | 59.6 | 0.03 |
| mm4_exon_D030062O11Rik/Tbx18_chr9_87730405_F | TCGTCGGCAGCGTCCAGAGAGCCGCGGATGGA | 61.5 | 0.02 |
| mm4_exon_D030062O11Rik/Tbx18_chr9_87730405_R | GTCTCGTGGGCTCGGGAACCTGAGCTTCGGTGAGG | 60.3 | 0.02 |
| mm3_exon_Surf4_chr2_26933509_F | TCGTCGGCAGCGTCGGCCAAGCCTTAAAGGGACC | 60.9 | 0.02 |
| mm3_exon_Surf4_chr2_26933509_R | GTCTCGTGGGCTCGGCTGTTCGTGAAGGGCGGT | 59.9 | 0.02 |
| mm4_intergenic_Lingo1|Odf3l1_chr9_56825697_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Lingo1|Odf3l1_chr9_56825697_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_n-R5s179|4930505K14Rik_chr5_148765935_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_n-R5s179|4930505K14Rik_chr5_148765935_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Grhl3_chr4_135564040_F | TCGTCGGCAGCGTCTGAGCCTGGGGTTAGAGGAA | 59.8 | 0.02 |
| mm4_intron_Grhl3_chr4_135564040_R | GTCTCGTGGGCTCGGGTCCCTTAGACACCCCTTGC | 60.0 | 0.02 |
| mm4_intron_Ryr1_chr7_29090289_F | TCGTCGGCAGCGTCAAGACAACCCAACCGTGGTT | 60.0 | 0.02 |
| mm4_intron_Ryr1_chr7_29090289_R | GTCTCGTGGGCTCGGGTGGTGGGTGTTTGTGTGTG | 59.8 | 0.02 |
| mm4_intergenic_Psma7|Ss18l1_chr2_180042436_F | TCGTCGGCAGCGTCCTCAAAAGCGCACACTCACC | 60.0 | 0.02 |
| mm4_intergenic_Psma7|Ss18l1_chr2_180042436_R | GTCTCGTGGGCTCGGTGCTGAGCTTCGGTGGTTC | 60.3 | 0.02 |
| mm3_intergenic_Tnip3|Ndnf_chr6_65670122_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Tnip3|Ndnf_chr6_65670122_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Prkacb_chr3_146812869_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Prkacb_chr3_146812869_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fbxo5|Mtrf1l_chr10_5808662_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fbxo5|Mtrf1l_chr10_5808662_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Nrg2_chr18_36196031_F | TCGTCGGCAGCGTCACTTGTAAGCGGAGGCCTTC | 60.0 | 0.01 |
| mm4_intron_Nrg2_chr18_36196031_R | GTCTCGTGGGCTCGGTGAGGCTCAGTGAGTCAGGA | 59.8 | 0.01 |
| mm4_intergenic_Enox1|Gm10132_chr14_77169569_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Enox1|Gm10132_chr14_77169569_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ankfn1_chr11_89538111_F | TCGTCGGCAGCGTCGCTCTTCGTGTGACTGAGCT | 60.0 | 0.01 |
| mm4_intron_Ankfn1_chr11_89538111_R | GTCTCGTGGGCTCGGGCCGTCTGAGATAGTGCACA | 59.8 | 0.01 |
| mm4_intron_Celsr1_chr15_86029994_F | TCGTCGGCAGCGTCCCCCACAAACCTGCTGAAGA | 60.1 | 0.01 |
| mm4_intron_Celsr1_chr15_86029994_R | GTCTCGTGGGCTCGGTTGCTGCTGTGATTGGTTGC | 59.9 | 0.01 |
| mm4_exon_Gm12462/Pax5_chr4_44684618_F | TCGTCGGCAGCGTCTTCTCTTTCCCCGAAGCCTG | 59.6 | 0.01 |
| mm4_exon_Gm12462/Pax5_chr4_44684618_R | GTCTCGTGGGCTCGGGTGCCATGCTAGTGGTGTCT | 60.0 | 0.01 |
| mm4_intergenic_Gm24338|Ppp2r3a_chr9_101251414_F | TCGTCGGCAGCGTCTCCTGTTAACGAGTTCCCGG | 59.3 | 0.01 |
| mm4_intergenic_Gm24338|Ppp2r3a_chr9_101251414_R | GTCTCGTGGGCTCGGCCACGCCAGAGGACTCCC | 61.7 | 0.01 |
| mm4_exon_Tbkbp1_chr11_97138893_F | TCGTCGGCAGCGTCGTAGAGCTCGCCGCCATAG | 60.0 | 0.01 |
| mm4_exon_Tbkbp1_chr11_97138893_R | GTCTCGTGGGCTCGGCAGCTACTCGGAGCTGGC | 59.8 | 0.01 |
| mm4_intergenic_Gm23681|Peli1_chr11_21034952_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23681|Peli1_chr11_21034952_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Macrod1_chr19_7062344_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Macrod1_chr19_7062344_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_3425401B19Rik|1810011H11Rik_chr14_32704240_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_3425401B19Rik|1810011H11Rik_chr14_32704240_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_C130040N14Rik/AI413582|Nudt3_chr17_27574903_F | TCGTCGGCAGCGTCCTTGCAGAGCCAGAGAGGAC | 60.1 | 0.00 |
| mm4_intergenic_C130040N14Rik/AI413582|Nudt3_chr17_27574903_R | GTCTCGTGGGCTCGGTTCCTCTCACTCGCTCTTGC | 59.7 | 0.00 |
| mm4_intergenic_Atp1a1|Mab21l3_chr3_101797617_F | TCGTCGGCAGCGTCGGTCCAAAGAGGGTGGTAGG | 59.3 | 0.00 |
| mm4_intergenic_Atp1a1|Mab21l3_chr3_101797617_R | GTCTCGTGGGCTCGGCCAGGCTGCATGAGGATGAA | 60.1 | 0.00 |
| mm4_intron_Fendrr_chr8_121070362_F | TCGTCGGCAGCGTCTGGAAGCTCTTCTGCTCAGC | 60.0 | 0.00 |
| mm4_intron_Fendrr_chr8_121070362_R | GTCTCGTGGGCTCGGGGGTTGCTGGGAGGAATGAA | 59.9 | 0.00 |
| mm4_exon_Apbb1_chr7_105574105_F | TCGTCGGCAGCGTCGCATTAAGCCTTTGGGACCC | 59.1 | 0.00 |
| mm4_exon_Apbb1_chr7_105574105_R | GTCTCGTGGGCTCGGCACCGAGACCAGAACCGAAA | 59.9 | 0.00 |
| mm4_exon_Fbxo9_chr9_78108320_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Fbxo9_chr9_78108320_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ccne2_chr4_11192342_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ccne2_chr4_11192342_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sdc4_chr2_164435894_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sdc4_chr2_164435894_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10612/Cbfa2t3|Acsf3_chr8_122738273_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10612/Cbfa2t3|Acsf3_chr8_122738273_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Egr1_chr18_34860943_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Egr1_chr18_34860943_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_exon_Clk3_chr9_57765258_F | TCGTCGGCAGCGTCCGAACTCGCAGACTCTGGG | 60.1 | 0.00 |
| mm3_exon_Clk3_chr9_57765258_R | GTCTCGTGGGCTCGGGGAAGAGACCTCCACCGATG | 59.5 | 0.00 |
| mm4_intergenic_Gm13002|Wnt4_chr4_137277310_F | TCGTCGGCAGCGTCCTCTAGCTCGGCCCAACTG | 59.8 | 0.00 |
| mm4_intergenic_Gm13002|Wnt4_chr4_137277310_R | GTCTCGTGGGCTCGGACTGGGCTTCTCCTGGGG | 60.6 | 0.00 |
| mm4_exon_Nup153_chr13_46727537_F | TCGTCGGCAGCGTCCCCCTCCTATGCCTCCGG | 60.9 | 0.00 |
| mm4_exon_Nup153_chr13_46727537_R | GTCTCGTGGGCTCGGTCTCGCTGTGTCTGTGTGTC | 59.9 | 0.00 |
| mm4_intergenic_Krt40|Krtap3-3_chr11_99546878_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Krt40|Krtap3-3_chr11_99546878_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Plekhm3_chr1_64845276_F | TCGTCGGCAGCGTCGACCCGTTGTTCCTGTCCTT | 59.8 | 0.00 |
| mm4_intron_Plekhm3_chr1_64845276_R | GTCTCGTGGGCTCGGGCAAACTGCCACCAAGATCC | 59.7 | 0.00 |
| mm4_intron_Prr14l_chr5_32839003_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Prr14l_chr5_32839003_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nphp4_chr4_152556601_F | TCGTCGGCAGCGTCGCAGCCTGGATCCTTGTCTT | 60.0 | 0.00 |
| mm4_intron_Nphp4_chr4_152556601_R | GTCTCGTGGGCTCGGGACCTATGCCTTCCCTGCTG | 60.1 | 0.00 |
| mm4_intron_Kcnn2_chr18_45675601_F | TCGTCGGCAGCGTCCCAACTCTCAGATGGCACCA | 59.6 | 0.00 |
| mm4_intron_Kcnn2_chr18_45675601_R | GTCTCGTGGGCTCGGACAGCAGGAAGAGATGCAGA | 58.7 | 0.00 |
| mm4_intron_Grik4_chr9_42733745_F | TCGTCGGCAGCGTCCCACTGTTGGCTGAGCATAAG | 59.2 | 0.00 |
| mm4_intron_Grik4_chr9_42733745_R | GTCTCGTGGGCTCGGGCTCTGAGCCCATGGATCTC | 59.9 | 0.00 |
| mm4_intron_Grhl2_chr15_37344144_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Grhl2_chr15_37344144_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fbxo21_chr5_117977099_F | TCGTCGGCAGCGTCGAGGTGAGCGAGCATCCC | 59.8 | 0.00 |
| mm4_intron_Fbxo21_chr5_117977099_R | GTCTCGTGGGCTCGGGCAGGCAGGCCTTTGTCT | 60.2 | 0.00 |
| mm4_intron_Fam129b_chr2_32881258_F | TCGTCGGCAGCGTCCTCCCACCCTTTAGCCTGTG | 60.0 | 0.00 |
| mm4_intron_Fam129b_chr2_32881258_R | GTCTCGTGGGCTCGGTCTCTTTTGGCAGCCTGTGT | 59.8 | 0.00 |
| mm4_intron_Dst_chr1_34011800_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dst_chr1_34011800_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tjp1|Gm7546_chr7_65572837_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tjp1|Gm7546_chr7_65572837_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tfap2c|Gm22773_chr2_172774531_F | TCGTCGGCAGCGTCATCTTCCTGAGGCCTGTCCC | 60.9 | 0.00 |
| mm4_intergenic_Tfap2c|Gm22773_chr2_172774531_R | GTCTCGTGGGCTCGGTAGGACAGGAGCTCCCACTC | 60.0 | 0.00 |
| mm4_intergenic_Prima1|Fam181a_chr12_103242695_F | TCGTCGGCAGCGTCGGAAAACAGACGTGAGCGGA | 60.5 | 0.00 |
| mm4_intergenic_Prima1|Fam181a_chr12_103242695_R | GTCTCGTGGGCTCGGAGACGAGGAATCACTGCAGC | 60.1 | 0.00 |
| mm4_intergenic_Pdgfra|Gm22084_chr5_75250480_F | TCGTCGGCAGCGTCTCCTCACGACAGTCCTGGAG | 60.6 | 0.00 |
| mm4_intergenic_Pdgfra|Gm22084_chr5_75250480_R | GTCTCGTGGGCTCGGCCATTCTGTGTCACCCTGTGA | 59.9 | 0.00 |
| mm4_intergenic_Nup54|Gm26039_chr5_92429323_F | TCGTCGGCAGCGTCCTCAGTGATCAGGTGCTGCT | 59.7 | 0.00 |
| mm4_intergenic_Nup54|Gm26039_chr5_92429323_R | GTCTCGTGGGCTCGGTGCAGCCTGGTGAATTGGTT | 60.4 | 0.00 |
| mm4_intergenic_Nckipsd|Celsr3_chr9_108826277_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nckipsd|Celsr3_chr9_108826277_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5530|mmu-mir-6344_chr1_82071213_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5530|mmu-mir-6344_chr1_82071213_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25758|Adamts3_chr5_89829147_F | TCGTCGGCAGCGTCAGCAAGCCTGAGATGACCAC | 60.0 | 0.00 |
| mm4_intergenic_Gm25758|Adamts3_chr5_89829147_R | GTCTCGTGGGCTCGGCACTGGGCAGAGGTCATCTC | 59.8 | 0.00 |
| mm4_intergenic_Gm25454|n-R5s165_chr6_112208713_F | TCGTCGGCAGCGTCTCCCACTGGATAGCATGACTC | 58.9 | 0.00 |
| mm4_intergenic_Gm25454|n-R5s165_chr6_112208713_R | GTCTCGTGGGCTCGGCTTGAGCCTTGCAAGCTGC | 60.0 | 0.00 |
| mm4_intergenic_Gm23752|Gm24815_chr12_7171842_F | TCGTCGGCAGCGTCACGGAATGCTCCAGTCCTTG | 60.0 | 0.00 |
| mm4_intergenic_Gm23752|Gm24815_chr12_7171842_R | GTCTCGTGGGCTCGGTGGGAGATGGTGAGAGACAGA | 59.6 | 0.00 |
| mm4_intergenic_Gm22346|Mcfd2_chr17_87246745_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22346|Mcfd2_chr17_87246745_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22227|Zfp703_chr8_26354046_F | TCGTCGGCAGCGTCTTGGTGGATGGGGAGCAAAA | 59.8 | 0.00 |
| mm4_intergenic_Gm22227|Zfp703_chr8_26354046_R | GTCTCGTGGGCTCGGACCTTCCTGGCTCTTACCCT | 59.8 | 0.00 |
| mm4_intergenic_Fignl2|Ankrd33_chr15_101066399_F | TCGTCGGCAGCGTCGAGATGGCCTCAGCTTTGCT | 60.3 | 0.00 |
| mm4_intergenic_Fignl2|Ankrd33_chr15_101066399_R | GTCTCGTGGGCTCGGCTGCCCTGTCCTACCTTGTG | 60.0 | 0.00 |
| mm4_intergenic_Chst14|Gm14089_chr2_118940063_F | TCGTCGGCAGCGTCGGCCTGAGAGACACACAGTG | 60.3 | 0.00 |
| mm4_intergenic_Chst14|Gm14089_chr2_118940063_R | GTCTCGTGGGCTCGGGCATCTTCCCCTGTCTGCTT | 60.0 | 0.00 |
| mm4_intergenic_Chid1|Ap2a2_chr7_141544951_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Chid1|Ap2a2_chr7_141544951_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_1700041M05Rik|Grik3_chr4_125451107_F | TCGTCGGCAGCGTCTAGTTTGCCGGGAGAAGCTG | 60.0 | 0.00 |
| mm4_intergenic_1700041M05Rik|Grik3_chr4_125451107_R | GTCTCGTGGGCTCGGTGGAGACAGAAGCCCAACTC | 59.3 | 0.00 |
| mm4_exon_Samd4b_chr7_28400909_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Samd4b_chr7_28400909_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Rbm47_chr5_66019237_F | TCGTCGGCAGCGTCCTGGTAGACGTCGTGGATGG | 59.8 | 0.00 |
| mm4_exon_Rbm47_chr5_66019237_R | GTCTCGTGGGCTCGGCTACGCCGGCTACATACCTC | 59.7 | 0.00 |
| mm4_exon_Rarg_chr15_102246295_F | TCGTCGGCAGCGTCCTAGAACACCAAGGACCCGC | 60.3 | 0.00 |
| mm4_exon_Rarg_chr15_102246295_R | GTCTCGTGGGCTCGGCATGCATCTCAGCGCCCTA | 59.9 | 0.00 |
| mm4_exon_Plekhg2_chr7_28367735_F | TCGTCGGCAGCGTCAACAAGAAGAGGAGGCGCTC | 60.0 | 0.00 |
| mm4_exon_Plekhg2_chr7_28367735_R | GTCTCGTGGGCTCGGGCGCCTTTGGAGAGCTAGTA | 59.5 | 0.00 |
| mm4_exon_Pde2a_chr7_101509912_F | TCGTCGGCAGCGTCATGTGTGCAACAGGGACCAT | 59.8 | 0.00 |
| mm4_exon_Pde2a_chr7_101509912_R | GTCTCGTGGGCTCGGCTTGAAGATGCGGAGGTGGT | 60.0 | 0.00 |
| mm4_exon_Msi1_chr5_115447321_F | TCGTCGGCAGCGTCAGAAAGGAGGGGAGAGGGAC | 59.9 | 0.00 |
| mm4_exon_Msi1_chr5_115447321_R | GTCTCGTGGGCTCGGCTTTACCTCCGTCTGCCTGG | 60.1 | 0.00 |
| mm4_exon_Mrc2_chr11_105292878_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Mrc2_chr11_105292878_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gpc1_chr1_92831649_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gpc1_chr1_92831649_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_C77080_chr4_129223507_F | TCGTCGGCAGCGTCCTGCTTTCGCTCAGGTTTGG | 59.7 | 0.00 |
| mm4_exon_C77080_chr4_129223507_R | GTCTCGTGGGCTCGGCTGTCTGGCAGGAGTGTGTC | 60.3 | 0.00 |
| mm3_intron_Tmem136_chr9_43116245_F | TCGTCGGCAGCGTCCCAGCAGCAAGGTCGCAT | 60.7 | 0.00 |
| mm3_intron_Tmem136_chr9_43116245_R | GTCTCGTGGGCTCGGACCCGTCTGGATGCCTAGAT | 60.1 | 0.00 |
| mm3_intron_Exoc4_chr6_33249348_F | TCGTCGGCAGCGTCGTGGAAGGGAGAGGCATCG | 59.8 | 0.00 |
| mm3_intron_Exoc4_chr6_33249348_R | GTCTCGTGGGCTCGGCGGCCCCAGAGAGTCTTAGA | 60.3 | 0.00 |
| mm3_intron_Dlg5_chr14_24144672_F | TCGTCGGCAGCGTCTCAGAGAGCTCAATGCAGCA | 59.3 | 0.00 |
| mm3_intron_Dlg5_chr14_24144672_R | GTCTCGTGGGCTCGGAGGAAGCACAGCTAGCAGTG | 60.0 | 0.00 |
| mm3_exon_Krtap1-4_chr11_99583291_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_exon_Krtap1-4_chr11_99583291_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm2_intron_Fblim1_chr4_141599205_F | TCGTCGGCAGCGTCTCCTCAGGCTACCGGTCTTT | 60.2 | 0.00 |
| mm2_intron_Fblim1_chr4_141599205_R | GTCTCGTGGGCTCGGCTGGGGCTGAACGACCAG | 60.0 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314014 |
AACCGCCAGAGAAGATGGTGCCCCACGGTTGCCTGAGCCCGCGAGCCGGCCCTCCGACTTCCCGGGAGCGTGGCGGGGGA GGCCAGGAGGAGGAGCCGGTCGATGGACTAGCAGGCAG |
| mm3_exon_Obscn_chr11_59135720 |
TATGCCCTCTGCGCGCATGGCCTCCCGCCGCTGCTGCAGGTGCGCCAGGAGCGTGGCGGTGGAGGTGCCGGGTGGTCCGG CAACCTCGGCGTCCGAGTCCACCACCAGAG |
| mm3_intergenic_Gm11523|Cdk5rap3_chr11_96886125 |
TTCGCTTCAGCCTCACAAGGCCACGGGTGGCCTCCCCCCACACACTCCAGGCCCCTCTTGGGGGCCCTTTGGGGAAGGGG CTCTGCTCCACTCACCAGCAGCCTGGCAGGCAGGGCAGCTTGGTAACTGCAGGCAG |
| mm4_intron_Shc3_chr13_51469116 |
GAAGTGGTTTGTGCTGGCTGGCCCGTACTGTTTCATCCGGAAGAAAATATCCTCTCCCCTCCAAACAGATCCAGAAAATC CTGCCAGGAGTGTGGAGGGGGAGGGATGGGTGGGCGTGGCACTCTCCAAGCCTTCAGA |
| mm4_exon_Tsc22d2_chr3_58416019 |
CCGAACCTCATCCTGGATGGGCAGCTGGCAGCCGCTTCAGCTGCGCCCGCCAACGGAGGCGGCGGTGGCGTGTCGGCCCG GAGCGTGGCGGGGGCACTCGCCCAGACCCTGGCGGCGGCCGCCGCTTCGGTGTCCACTCC |
| mm4_exon_Zbtb7a_chr10_81144245 |
TGGACCAGCAGAACGTGTACGAGATCGACTTCGTGAGTGCCGAGGCACTGACGGCGCTCATGGACTTCGCCTACACCGCC ACGCTCACGGTCAGCACGGCCAATGTGGGCGACATCCTGAG |
| mm3_exon_Hmcn1_chr1_150993403 |
GCAGGGAGCTGCGAGTAGCCGAGCGCCCGCAGAGCGCGGGGTCCATGCCCTGGGGGACGCTGCGAGCCTGCGGTGCCGCC TCCGCCGCCGCGCTCCAGGCCAGCGACTGAGCCTCCCAACTTT |
| mm4_exon_Ltb_chr17_35196232 |
TGTGAATCGTGATGTCCGGGACCCCGACAGTCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAACGGAATGTAGGA CACGAATTTTGAAAATAAAGAATGTAAACTATGCCGGCCCTTGCCAGTGTCTTCACGGAA |
| mm4_intron_Crtc1_chr8_70420527 |
GGTCAAAGCCACAGCAAAGGCAGATAGAGAATGGAGCCCTGTGCTGCACACCACACATCTGTGACCTAATCTCGTTATGC TGTGGGTTCAGCAAAGGCCCAGAGCGTGACAGGGGAGGCAGACAGTCGCAGGAAAGAGGC |
| mm4_exon_Aldh1a2_chr9_71215884 |
CCCATGACTTCCAGCGAGATCGCCATGCCGGGCGAGGTGAAGGCCGACCCCGCCGCGCTCATGGCCTCGCTGCAGCTCCT GCCGTCGCCCACGCCCAACCTCGAGATCAAGT |
| mm4_intron_Tprg_chr16_25368085 |
GCTCCAGCAACATCTCCTGTCTAGACAATGTAATTATGAGCACAGAGCAAATAGCTGAAGTGTATGCCGCCCCCAAGGGT TGCATAACTCCAGGAGCGGGGCTGGGGAGACAGAGGGAGGTGTGGATGCTGTTA |
| mm4_exon_Phf15_chr11_51857442 |
GCTCCCGAAGCCAGGAGCTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCATCCGGGGTCGTGGCGAGGGAGGC GACCGGGCCGCGGCGCCCCCCAAGCCCCGCACCCCTGCTGGGAAGATGGTCAG |
| mm4_intergenic_Gm25199|Syt6_chr3_103575160 |
GAACCTGCCCGGACTCAGGCAAGTCCCTGAGTGTGGAGGGGGCGGCCGTGAGGCGCCAGACTTGCCAGCTGCCGCGGGAT GCCACGTGAGGGGCGGGGACCCTGCGGGGAAGTGATTAAAAGCAGAGCGGAGCCTC |
| mm4_exon_Cnnm1_chr19_43440895 | GACGTGGAGGTCCTGGGGCCCCTGCGCCCCGGGGGCGTGGCGGGCTCGGCCCTGGTCCAGGTGCGGGTG |
| mm4_intergenic_Actrt2|Gm13113_chr4_154701181 |
CTTCCCAGAGAGACCGCAAGCGAAGAAGTCGAGGACTCGAGACACCACCCCCTCCACGCTCCCGGCTGCTCCTTGGTGTG TGAGCGAT |
| mm4_intergenic_Zg16|Gm22747_chr7_127055684 |
CCCCAGGCAACACTTCATTTCATCAAACATTACAAGTGAGGCAAGATAGGAAGACAGAGAATTAAGGGGACAAGAGAAAG GAAGAGAGCCCCCCCCCCCACGCTCTTGGATCTCGTTTAAATTTCCCATTGGT |
| mm4_exon_Gm10760/Mctp1_chr13_76384444 |
CTCCGAGCTGGCCTGAAGCCGCTGGACGCTCCGGGCTTGTGCTGCTGCGCTGNNNNNNNNNNNNNNNNNNNNNNNNTCCA CGCTCCCGGAGGAGGCGCAGCCCGAGAGGGAGGAGGAAAGGCAA |
| mm4_intergenic_Zic1|Zic4/Zic1_chr9_91361962 |
AATGGGACTTGGGCTTGGTTCTCCCGGCGTAGCCCAGCACCGCCACGCTCCAGGAGGGGACTCTGCCCTACAGTACTCAC AAAAGAAAAAGAGGAGGGGGGCTGGGAAGGAGGAGGCTGCTTTT |
| mm4_exon_Rd3/Gm26670_chr1_191985444 |
ACCATCTCGGAGGATGTGGAGCGCGATGCGCCACCCCCGCCGCGCACCTGGAGCATGCCGGAGTTCAGGGCGCCCCAGGC CGACTGACCACCCAGGGCAATCACCCTCAGGAGGAATAACGGGCTGG |
| mm4_intergenic_Gm14513|Gm26314_chrX_11714054 |
GGGAGCATTTGTTGAAGCGAGGACAAATCAAGTACCTAGTAGCATTTCATCAACAGTGATGAAGAGGATCAGTAGACTAA GCAACCTGGAGCTAGGCATGGGAGGCCCCTGAAACACAGAAAGGCCC |
| mm4_intron_Sez6_chr11_77931462 |
TCCACTCCAGGCGTCTAGGGGCGCCCGGGCGCGTTGCGGGGGGGGCGGCAGGTCGCGGGTGCAGAGTCCGGACAGCCCAG CTACCAGCCCGCCGTTCTGCCTACCCCGCTGGTCTCCAAACTTCGCTCGA |
| mm4_intergenic_Cops8|Gm9991_chr1_90644089 |
GTCTTGCGCAGTCCAATGTGAGCAGCGTGGGTCTCCCGTGCCAAGCTCCTGGTTTTATAGAGTCTACAAACAATTAATGA GAGCCTTGGCTGGATTCGTGAGGGAGTATGCAATCCAGGGG |
| mm4_intron_Rxra_chr2_27677639 |
GTGGCGGTACCGAGAGTTAGCGCGCCGGGCCCGGGGAGGCGAGTGGGCACAGGGCAACTTTTCCCGGGCCCAGGCGCGCG GCGGGAGAGGGCGAGGACGCCGGGCCTCTGACTTGCCGAGGAGC |
| mm4_intergenic_Smyd2|Prox1_chr1_189922419 |
GAACTCGGCGCTCTGCTCGGGGCGGGTGCTGTGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNACGGGAGTCCGCCTGCACCCGCCAGGCTGCGCTGCCCGGTGAGGAAGGCTGGAG |
| mm4_intron_Arhgef37_chr18_61499466 |
GGTTTGCCTTGCTTGCACAGCACCCAGGAACGGGGCGAGGAAGGCCACATTGGATCTTACTTTAGACATTTCATGAACCA CTGAATTACTGTAAGCTGACTGGCACCA |
| mm4_exon_Gm7701_chr18_24258301 |
GGTTGTTCAGGCCCATGAGAGTGAGGTGACAGGCCTCAGCCTCCACGCTACTGGAGACTATCTCCTGAGAGCCTCTGATG ATCAGTACTGGGCCTTCTCTGACGTGACAGATGAGACCTCCG |
| mm3_intron_Jarid2_chr13_44730342 |
CTCCAACCCCTCGCTGACANNNNNNNNNNNNNNNNNNNNNNNNACGCTCCGAGGCCTTTCCCCCGGGAAGCCTGGCGGCT TGCCCTCGCGGGCCCGCGGGCGCGCTCTCGCGCGCCGATTCCTCGATTCCACAGGCG |
| mm4_intron_Zc3h8_chr2_128943786 |
CTGACTTCCACCCCACTTCCCCTTCCGACCTCCCCGCTCCGGTCCCGGCCCACGCGCCAGCCAGGGCTCGCCGGTTTCCA GGAGCGAGGGGGCGGAGCCCAAGCGGTGCCCTGCAAAGGACCAGAACGTGGGGATCAC |
| mm4_exon_Ndnl2_chr7_64872848 |
GACGTGCTGGGTCCTTCCTCGCCAGCGCCTCCCCAGTCCCGCTCCGGGTCAGCCTGCGTGCTGGGCCGACCGCGGCCCCT CGGCTTCTGCAACATGTC |
| mm4_intron_Gm11762_chr11_119565558 |
ATGAAGCTGCTGTCCCTCACCCGCAGCCCCCAGACCCCTTGCCCTCCCCCGGCTCGCCCCAGGTTCTGGCTGTAGATTGN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAGAAGCATGAGGTCTGCC |
| mm4_intron_B230219D22Rik_chr13_55693577 |
AGTCTCGCCCTGGAGCTGCGGTCGTCCCCGCATCCCGAGAGCGCGGCGGGGAACGCCTCGGGGTCCCGTTAGGATGCTGA CTTGGGGAAGCGCCGTGGGGCACGGCTAAGGAGCGCAGAGAAGA |
| mm4_intergenic_Fam49b|Gm25628_chr15_63997974 |
CTCGTCACGGCGCTAGGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGGGAGCCCCTCCGCACC TGCCCCTCTGGCGGAGCCGCGAAGAGCCAGGCGACAG |
| mm4_intergenic_Rhobtb3|Gm6311_chr13_75943948 |
TCGGAAGGCTGAAACCTGAGCCGGGAGCGGGGGAGGGGCGGCCTGGCCCCCGCCGGGGACCAGAAGAGAGCCCAGCCAGG AGGCAGCCCCCTGCCCACCCCGCGGTCCCGTACCCACCCCAGCCTTCGCAGAAAGTGTGT |
| mm4_intron_Nek7_chr1_138618062 | GGCCCACATCCTCAGACAAACTTGGCCTCCCTCGCCTAGCTCAGGGCAGCGGTAGGAAGTACCCGCCCTCC |
| mm4_intron_Ehd2_chr7_15955204 |
GGGAGGCGTGGCTTGTTATTCAAGGGGCGTGGCCTTCCAGGGAGGCCCAAATGGGAGGACAGAGTCTGCCAGGACCGTGG TAGGGGAGGTCCTGCCATGGCTTCCATAGCAGAAAGAGGCAGGCG |
| mm4_intergenic_Klf14|Mir29a_chr6_30959067 |
TGGCGAGCCAGGTAATTTCAATGCGCGCAAGTCCCGGATCGCAACTTCTGGGCAGCCTGCCGGCCTCGCCCCCCTCGCCC CTGGTCTCTGGCCAGCTGGGTGTCAGGCAGAGTCCTA |
| mm4_intergenic_Gli2|mmu-mir-6346_chr1_118927093 |
TGCAGGTTACAGGAGCAAGGCCTGCCGCTGGGCACATCTGTCTTTCCCAAATGCTGACACAGGGAGAAGTCTGCACAACC TGGGCTCCCCACCCAAGCTCCAGGAACCTTTCTCCTGGTGGGCATT |
| mm4_intron_Sirpa_chr2_129594922 |
GCTTCCTCCTGCCTTACCAGTCCCAGCCCTACCCTGCCATGCTCCAGGGCTTGGGAATCTACAGGCATCTCTCCGAAGTA CAGAACACTGGGCCCAGATT |
| mm4_intergenic_Tcte2|Gm24867_chr17_13667284 |
CTGAGAACACAGAGGCTGGGAGGGGCCTCCCCCACCACACACGTGGTATATACACAAGTCTCCAGGAACAGTCTCCCTCT GTGAGGTAGGTGGGTCCCCTCTCCTCCCCAGACCAGCCTTGATTT |
| mm4_intergenic_Zeb2/Gm13476/ZEB2_AS1_3/ZEB2_AS1_4|Zeb2_chr2_45117167 |
GAACTTCGCTCCCTCTGTCGGTCCCGGAGCACGTGGGGGGGGGGGGAATCGGCGGCCCGCACCCCCCTGCAACACCCGAC CCCGCCCTGGTACCGCGCGACCCCCGCCCCGCTCCCGGTCAGCTGACCTGGCTCGC |
| mm4_intergenic_Sdccag8|Gm15423_chr1_176927625 |
TGTGCAATGAACATCGACGCTGGGGGTGCTCTCCTCTCCCCTGCCACACAGGCCCACAGCCTGGAGCATGGCGGCTGAGG CAGCCAACTCATCTTCTGAAGAAGCCCAGAGGAAACCAAGAGCGT |
| mm4_intron_Zfr_chr15_12118808 |
ATGGAGAGAGAGTGAGCCGAGGGGCCTCGCGCGGAGTGCGGAGTCAGCGGCCTCTACCGCGACGCCCCCGGAGCCCAGAT CACACAGCAGGTCTTTGTCGGTACC |
| mm4_exon_D030062O11Rik/Tbx18_chr9_87730405 |
CAGAGAGCCGCGGATGGACGGTGTGCGGGGCCGACGGCTCAACGCCTGCCCCCGGGGCTCGGCGGCGGAGGCCCGGGAGG AGCGGGCGCTAGCGCTGCCTCACCGAAGCTCAGGTTC |
| mm3_exon_Surf4_chr2_26933509 |
GGCCAAGCCTTAAAGGGACCGCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNGAGGAGCCTGGCGCCGGCGCACCGCCCTTCACGAACAG |
| mm4_intron_Grhl3_chr4_135564040 |
TGAGCCTGGGGTTAGAGGAACTAAGTGAACAGCCCCTCCCCTGCCAGGCTCCAGGCTAGGCAACTCCCTAACTAAGGCGG CATGGGAAAAGCAAGGGGTGTCTAAGGGAC |
| mm4_intron_Ryr1_chr7_29090289 |
AAGACAACCCAACCGTGGTTAGGGCACACATCTGCCTGCAGACAGGGAACCCTCAAGGCCTCCTTCCCCATGCTCCAGGA ATACTGTGACTTCAGAGCCCCACACACAAACACCCACCAC |
| mm4_intergenic_Psma7|Ss18l1_chr2_180042436 |
CTCAAAAGCGCACACTCACCGTCAGCGCCCCGCCCTCCCGGGCCACGCTGCTGGCGTCTGGCGTCAGGGGGACGTGCGGC ACGGCGGGGCGGGGCAGGGCGGGCGGAACCACCGAAGCTCAGCA |
| mm4_intron_Nrg2_chr18_36196031 |
ACTTGTAAGCGGAGGCCTTCACAGCCTGGGAGTCTGCCCAGCTGCTCCTGTAGACCCTGCCAGCCTGGGCAAGGCAGGCC CCCGGGAGCTGAGCGGGCGAGGCCTCCGAGGGTCACTCCTGACTCACTGAGCCTCA |
| mm4_intron_Ankfn1_chr11_89538111 |
GCTCTTCGTGTGACTGAGCTTGCTGTAAGGAGAATGCCCACTTGTCAGAAATGGGCCTTCCCCACCCTGCTCCTGGCTGT TCCACAGGGCAGTGTGTGCACTATCTCAGACGGC |
| mm4_intron_Celsr1_chr15_86029994 |
CCCCACAAACCTGCTGAAGAAGGCAATGAGGGGGCCTCCTCCTCCACGGACCTGGGTAGGGAGCACGCCCCCACCATGCA ACCAATCACAGCAGCAA |
| mm4_exon_Gm12462/Pax5_chr4_44684618 |
TTCTCTTTCCCCGAAGCCTGGCAGCTCTGCCGCTCTCCAGGAGCATGGGGAGGGAGCCCTGATGGGGAGCTTCCAGCAGG ATCAGTGGGGGCCTCAGACACCACTAGCATGGCAC |
| mm4_intergenic_Gm24338|Ppp2r3a_chr9_101251414 |
TCCTGTTAACGAGTTCCCGGCCCGGGCGTCCCGCGAGGTGGGAGGCGCCGGCCATCCGGCCCCCTGGCCTCCTCCGCGGA GCTCCCGGGCCACCGTTCTCCACGGCCGCCAGCCCCGGGAGTCCTCTGGCGTGG |
| mm4_exon_Tbkbp1_chr11_97138893 |
GTAGAGCTCGCCGCCATAGGCGCGGGGCTTGGGAAGTGTGGCAGCCTCGGCCTGTAGCCAGGCGGGGGAGGCACCAGCGT AGGCCGCCCCCTCCGCCAGCTCCGAGTAGCTG |
| mm4_intergenic_C130040N14Rik/AI413582|Nudt3_chr17_27574903 |
CTTGCAGAGCCAGAGAGGACTGCCAAGGCCTCCCCAGCAGGGCTCCGGGAAGGGGGCCAGGCTGGGCTGGCTGCAAGAGC GAGTGAGAGGAA |
| mm4_intergenic_Atp1a1|Mab21l3_chr3_101797617 |
GGTCCAAAGAGGGTGGTAGGATATGGAAATCTGTGGCCACACCCTCCAGGCTCCAGGGATACTGGCCCTTTTCTCTGTTC AACACGAATGCTCTCCAACAAACAGCATGGTATCCAGCTTCATCCTCATGCAGCCTGG |
| mm4_intron_Fendrr_chr8_121070362 |
TGGAAGCTCTTCTGCTCAGCCCAGGCTGGAACCTGGGGCCTGGCCTGGGAGGCCAAGTCCAGCCCTCTCCCCTGGTCCCC AGTTCTACTCTGCCCCTCGATGCTGGCTCTGCTTATTCATTCCTCCCAGCAACCC |
| mm4_exon_Apbb1_chr7_105574105 |
GCATTAAGCCTTTGGGACCCAAAGGTGCCGTCTCAGCCTCCTGGCTGGCCTCCTCCGCCAAGGTCAAGGTCACATTTCGG TTCTGGTCTCGGTG |
| mm3_exon_Clk3_chr9_57765258 | CGAACTCGCAGACTCTGGGGGACTGGCCTGCCCCGCCAGGGTCCGGGCGACATCGGTGGAGGTCTCTTCC |
| mm4_intergenic_Gm13002|Wnt4_chr4_137277310 |
CTCTAGCTCGGCCCAACTGGGCGGCGTGCGGCCAAGCGTGCCTGCAGCAGCGGGGCTGAGGCTCCGAGCGCGTCCGGGCG CCGGGCCGGGGAGGCCCCCCAGGAGAAGCCCAGT |
| mm4_exon_Nup153_chr13_46727537 |
CCCCTCCTATGCCTCCGGCTTCCGAGGCCATGGCGGAGCCTGGGCGGCCTCCCACTACCGCTCCCGGGCGGGAGAGGCAG AGGCGGCGGCCTGAGGGCCTCCCCCGCCCGGCCCTAGGCGACACACAGACACAGCGAGA |
| mm4_intron_Plekhm3_chr1_64845276 |
GACCCGTTGTTCCTGTCCTTACCCAGGAAAAGGCTGAGGGACCTCCAGCCTGGCGGAGGAGGCCTTTGCTTCTCTAGCAA GAGGATCTTGGTGGCAGTTTGC |
| mm4_intron_Nphp4_chr4_152556601 |
GCAGCCTGGATCCTTGTCTTCCTGGTGGGTGTTGGGGGAGGCCGCACCTGCTGCCATCCCTGTTGTTGGCTGACCCCTTC CCCTGCAGCATGGGCTCCTCTGCACAGAGGCAGCAGGGAAGGCATAGGTC |
| mm4_intron_Kcnn2_chr18_45675601 |
CCAACTCTCAGATGGCACCAATTTCTCTACCTTTGAAAAGACCCAAGCTTTGGCTTCTTTCTAGTCTTAACTTCCCTGGA GAGAGGGAGGGGAGGCCGCTACTTTGACTCACTGCTGTATTCTGCATCTCTTCCTGCTGT |
| mm4_intron_Grik4_chr9_42733745 |
CCACTGTTGGCTGAGCATAAGCTCCTCCCCCTCCACTCTCCAGGCCAGTTTCTGGGTTCCCTCCTTGTGCGCATTGAGAT CCATGGGCTCAGAGC |
| mm4_intron_Fbxo21_chr5_117977099 |
GAGGTGAGCGAGCATCCCGTTCCCGGGACCCGCAGAGCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCCCGCGGCCGCAGACAAAGGCCTGCCTGC |
| mm4_intron_Fam129b_chr2_32881258 |
CTCCCACCCTTTAGCCTGTGCTCTGGCCTCCTGGGGGCCTCCCACCTCACCCTCCAGGCCTTCCCACACAGGCTGCCAAA AGAGA |
| mm4_intergenic_Tfap2c|Gm22773_chr2_172774531 |
ATCTTCCTGAGGCCTGTCCCGGGGCTCAGGGCCCTGCTGAGCTGGGCGAAGAGCTCTGGGCCTCCACAGCCACCATCCTG GTTTCTATAACCAGACTTCTATAGCTAGCACTCTGGAGTGGGAGCTCCTGTCCTA |
| mm4_intergenic_Prima1|Fam181a_chr12_103242695 |
GGAAAACAGACGTGAGCGGAGCCAGAGCCTCGCCCGCCTCCCTCCCGGGCTGCACTCCCGCCCGCGCTCCCCGCTGCCGC GGCCGCCAGCGCCGCTGCAGTGATTCCTCGTCT |
| mm4_intergenic_Pdgfra|Gm22084_chr5_75250480 |
TCCTCACGACAGTCCTGGAGGGTGAGCAGCACAGGTGATGTTCCTGTGGTTGAGGCCTGGAGACAGGCTGGGGAGGCCAA GTCACAGGGTGACACAGAATGG |
| mm4_intergenic_Nup54|Gm26039_chr5_92429323 |
CTCAGTGATCAGGTGCTGCTACAGACCCGAGGACACAAGCACGGGCAGCAGCACACACTGGGCCCATGGTGCCGGGAGGG GGGCTGGGGAGCCCCAGGAACCAGCTGGCCAGTGGTCTAACCAATTCACCAGGCTGCA |
| mm4_intergenic_Gm25758|Adamts3_chr5_89829147 |
AGCAAGCCTGAGATGACCACCAGTCAGGTGTCATGTATGCCTGGAGGTTGGGGGGGCAGGCCTGAGATGACCTCTGCCCA GTG |
| mm4_intergenic_Gm25454|n-R5s165_chr6_112208713 |
TCCCACTGGATAGCATGACTCTGTGGTGTAGTTATCTCTTCTAAATTGAAACATTTCTGCCTAGAGGGTGATGGGGGAGG CCCATGAGACGTGATGACCTAATGCAGCTTGCAAGGCTCAAG |
| mm4_intergenic_Gm23752|Gm24815_chr12_7171842 |
ACGGAATGCTCCAGTCCTTGACCAATGCTCTGTATTGAAACTCCAGCCTCTCCCCCCTCCCCCCCCACCCTCCAGGGTCT CTTTGCCTAACTCTGTCTCTCACCATCTCCCA |
| mm4_intergenic_Gm22227|Zfp703_chr8_26354046 | TTGGTGGATGGGGAGCAAAACTGAGGCCTCCCCCCCCCCCCCCCGGGGTGGGAGGGTAAGAGCCAGGAAGGT |
| mm4_intergenic_Fignl2|Ankrd33_chr15_101066399 |
GAGATGGCCTCAGCTTTGCTGGGGCAACCCCCTCCCCCAGCCCAGCCTGTCTGGTCTGCCCTGCCCGGAGAGAGGAGGGG CAGGCCGGAGAGCAGGACACAAGGTAGGACAGGGCAG |
| mm4_intergenic_Chst14|Gm14089_chr2_118940063 |
GGCCTGAGAGACACACAGTGCTATGGAATGTGGGCTTCTCCTGGGGAGTGGGGGGGGAGGTCTGAGAACATAGAGGAGGC AGCACAGCATCCCTGCAGTGAAGCAGACAGGGGAAGATGC |
| mm4_intergenic_1700041M05Rik|Grik3_chr4_125451107 |
TAGTTTGCCGGGAGAAGCTGCATAAATCAGGATTTCAAACAAAGGCTCTCCATCCAGGCCAGGGGCTCCCTAGTCACTCC CAGGAGAGAGGCTGGGGAAGCCCAGAAGCAGTGCATGTAGAGTTGGGCTTCTGTCTCCA |
| mm4_exon_Rbm47_chr5_66019237 | CTGGTAGACGTCGTGGATGGGCACCTGGAGAGCAGCGGGGAAGGCCTGAGGTATGTAGCCGGCGTAG |
| mm4_exon_Rarg_chr15_102246295 |
CTAGAACACCAAGGACCCGCAGCCCATTCCCCCTCCTCCCCCCGCAGCGCCCCGCTCCTGGAGGGGGGAGGGGGAGGGCT AGCGTAGGGCGCTGAGATGCATG |
| mm4_exon_Plekhg2_chr7_28367735 |
AACAAGAAGAGGAGGCGCTCACCCCCACGAAGCCTGGGGCCTCCCCCGCCTCCCCCTCGGAAAGTGCCTTCCAGTACTAG CTCTCCAAAGGCGC |
| mm4_exon_Pde2a_chr7_101509912 |
ATGTGTGCAACAGGGACCATGACAGCCCTCCCCTGACACTCTCCAGGACTATCAGCGCATGCTGGACCTGATGAGGGACA TCATCTTGGCTACAGACCTGGCACACCACCTCCGCATCTTCAAG |
| mm4_exon_Msi1_chr5_115447321 |
AGAAAGGAGGGGAGAGGGACTGTCCCCTTCCCCGGGGTGAAGCTGGCAGAACGACTGTACCTGGGCACTGGCCAGTTTCT TCAGCTACATGGCCCTCGAGGGTGGGGCGGGAGGCCAAGCCAGGCAGACGGAGGTAAAG |
| mm4_exon_C77080_chr4_129223507 |
CTGCTTTCGCTCAGGTTTGGGCGGCAACCCTAAGGGCCCATCAGGCACTGCGGAGCCGCGCTGATGGAGGGAGTAGGTCC GGCGGGGAGGCGGGGGAGGCCGTTTCATCTTACGCAGGGACACACTCCTGCCAGACAG |
| mm3_intron_Tmem136_chr9_43116245 |
CCAGCAGCAAGGTCGCATCCCGGAGGGTGGCGGGGGAGTGCCCAACTGCTCGACCACGCCCGACTTCTAACCCGGAACGT CCCATCCTGAACCGTTATCTAGGCATCCAGACGGGT |
| mm3_intron_Exoc4_chr6_33249348 |
GTGGAAGGGAGAGGCATCGGCTGGGCCCCATCCGCCGGCCCTTCTCTCCCTTTTGGCCTCCCCCGCCCCTCCCCAGGGCC TATTGCCCGCCCCCGCCGGGCAGTGTTCTAAGACTCTCTGGGGCCG |
| mm3_intron_Dlg5_chr14_24144672 | TCAGAGAGCTCAATGCAGCAGCCGGGAGGGGGGCGGGGGGGGCCAGTGACACTGCTAGCTGTGCTTCCT |
| mm2_intron_Fblim1_chr4_141599205 |
TCCTCAGGCTACCGGTCTTTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGGCCAGCTGGTCGTTCAGCCCCAG |