← return to the list of all guides
Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314003_F | TCGTCGGCAGCGTCAACCGCCAGAGAAGATGGTG | 60.0 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314003_R | GTCTCGTGGGCTCGGCTGCCTGCTAGTCCATCGAC | 60.2 | 1.00 |
| mm3_intron_Inpp4a_chr1_37366459_F | TCGTCGGCAGCGTCTGTCATGGGTTCACGAGGTG | 59.9 | 0.69 |
| mm3_intron_Inpp4a_chr1_37366459_R | GTCTCGTGGGCTCGGTCAGTAGAAGGACGCTTGGC | 59.7 | 0.69 |
| mm4_intron_Styxl1_chr5_135774770_F | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intron_Styxl1_chr5_135774770_R | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intergenic_Rpsa-ps10|Mir3963_chr3_150677303_F | TCGTCGGCAGCGTCACGTCTAAATGGCAAGCGGT | 60.3 | 0.48 |
| mm4_intergenic_Rpsa-ps10|Mir3963_chr3_150677303_R | GTCTCGTGGGCTCGGGTCCTGAAAAGGCATGCGTG | 60.1 | 0.48 |
| mm4_intergenic_Rpl31-ps18|Ins1_chr19_51923168_F | TCGTCGGCAGCGTCTGGTTGGGCTTTATGCAGGA | 59.5 | 0.42 |
| mm4_intergenic_Rpl31-ps18|Ins1_chr19_51923168_R | GTCTCGTGGGCTCGGTTTTGCAGGGACTCAGAGCA | 59.5 | 0.42 |
| mm4_intergenic_Cxcr3|Tpt1-ps6_chrX_101752753_F | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intergenic_Cxcr3|Tpt1-ps6_chrX_101752753_R | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intergenic_Gm23342|Myt1l_chr12_29049731_F | TCGTCGGCAGCGTCTGCAATATGTCCTTGTTACGACT | 58.1 | 0.38 |
| mm4_intergenic_Gm23342|Myt1l_chr12_29049731_R | GTCTCGTGGGCTCGGTCATAAACCAGTCCAGGGCC | 59.3 | 0.38 |
| mm4_intron_Ntmt1_chr2_30820796_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intron_Ntmt1_chr2_30820796_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Gm22825|Zfhx3_chr8_108099352_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm22825|Zfhx3_chr8_108099352_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Lipc|Aqp9_chr9_70963548_F | TCGTCGGCAGCGTCAATGAGAGCAGCTTCCGCTC | 60.4 | 0.33 |
| mm4_intergenic_Lipc|Aqp9_chr9_70963548_R | GTCTCGTGGGCTCGGACTCCAAGACACAGTGCCTG | 59.8 | 0.33 |
| mm4_exon_Mmadhc_chr2_50296417_F | TCGTCGGCAGCGTCGCAGTATAGGCGTGTCCCTC | 59.9 | 0.27 |
| mm4_exon_Mmadhc_chr2_50296417_R | GTCTCGTGGGCTCGGAGTGCCAGCGCCCTAGTG | 62.0 | 0.27 |
| mm4_intergenic_Tmem30b|Prkch_chr12_73580600_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Tmem30b|Prkch_chr12_73580600_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Dis3l2_chr1_86703848_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Dis3l2_chr1_86703848_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Maml3|Foxo1/Gm20402_chr3_52267896_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Maml3|Foxo1/Gm20402_chr3_52267896_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Igdcc3|Gm25313_chr9_65188730_F | TCGTCGGCAGCGTCAAGTTGGTGCAGGAGAGCAG | 60.2 | 0.21 |
| mm4_intergenic_Igdcc3|Gm25313_chr9_65188730_R | GTCTCGTGGGCTCGGCAAGGTGGCAGCAAAAGTCC | 59.9 | 0.21 |
| mm4_intron_Itga2b_chr11_102455343_F | TCGTCGGCAGCGTCCAGGAAACTCTGAGGGCAGG | 60.0 | 0.19 |
| mm4_intron_Itga2b_chr11_102455343_R | GTCTCGTGGGCTCGGTTGTGCTGGCCATGTACCAT | 59.9 | 0.19 |
| mm4_intergenic_Agpat2|Fam69b_chr2_26609717_F | TCGTCGGCAGCGTCGCCCTGTCTGGTAGGCATTT | 60.0 | 0.17 |
| mm4_intergenic_Agpat2|Fam69b_chr2_26609717_R | GTCTCGTGGGCTCGGAGCTGTTGAAGGCACCAGTT | 60.1 | 0.17 |
| mm4_intergenic_D730003I15Rik|Nenf_chr1_191268706_F | TCGTCGGCAGCGTCGCCTCCTTGTGTACTCCTGC | 60.3 | 0.17 |
| mm4_intergenic_D730003I15Rik|Nenf_chr1_191268706_R | GTCTCGTGGGCTCGGGGGCATGATCCCATCAGAAGA | 59.5 | 0.17 |
| mm4_intron_Dis3l2_chr1_86772418_F | TCGTCGGCAGCGTCTCTTGAAATGTCTTGCTGTGCA | 59.0 | 0.16 |
| mm4_intron_Dis3l2_chr1_86772418_R | GTCTCGTGGGCTCGGAAGTCATGCACCCAACCAGC | 61.1 | 0.16 |
| mm4_intron_Galc_chr12_98234435_F | TCGTCGGCAGCGTCCCACACTGTGTAGGTTCCAGG | 60.2 | 0.15 |
| mm4_intron_Galc_chr12_98234435_R | GTCTCGTGGGCTCGGAGCAAACCTGGGCGAAGAG | 60.3 | 0.15 |
| mm4_intergenic_Nsmce2|Trib1_chr15_59636198_F | TCGTCGGCAGCGTCATCAAAGTGGGTTCAGGGCG | 60.6 | 0.15 |
| mm4_intergenic_Nsmce2|Trib1_chr15_59636198_R | GTCTCGTGGGCTCGGCTGTCCCATGGCTTCCTCAG | 60.1 | 0.15 |
| mm4_intergenic_Gm26474|RP24-351J24.2_chr5_120313450_F | TCGTCGGCAGCGTCTCCCCAGAGGAAGAGTGGAG | 59.9 | 0.13 |
| mm4_intergenic_Gm26474|RP24-351J24.2_chr5_120313450_R | GTCTCGTGGGCTCGGCCATTAGCCTGCTCAGTCCC | 60.1 | 0.13 |
| mm4_intergenic_Gm25509|n-R5-8s1_chr18_73294214_F | TCGTCGGCAGCGTCTGTCTCCAAATCCTGCCCAA | 59.2 | 0.13 |
| mm4_intergenic_Gm25509|n-R5-8s1_chr18_73294214_R | GTCTCGTGGGCTCGGGAAGATGGGGTTGGCTCAGG | 60.3 | 0.13 |
| mm4_intergenic_Otogl|Ppp1r12a_chr10_107951530_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Otogl|Ppp1r12a_chr10_107951530_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Muc6|Muc2_chr7_141694688_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Muc6|Muc2_chr7_141694688_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Txlna_chr4_129640255_F | TCGTCGGCAGCGTCGAAAAGCAGAGCTGGCACAC | 60.0 | 0.11 |
| mm4_exon_Txlna_chr4_129640255_R | GTCTCGTGGGCTCGGGACCCAGACAGACAGCTCCT | 60.9 | 0.11 |
| mm4_intergenic_Nfyb|1700028I16Rik_chr10_82777904_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Nfyb|1700028I16Rik_chr10_82777904_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Suz12|Crlf3_chr11_80043438_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Suz12|Crlf3_chr11_80043438_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Sec11c|Grp_chr18_65852082_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Sec11c|Grp_chr18_65852082_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Slc4a1|Bloodlinc_chr11_102373811_F | TCGTCGGCAGCGTCGCCTCACCTATCCTCCCTGA | 60.1 | 0.08 |
| mm4_intergenic_Slc4a1|Bloodlinc_chr11_102373811_R | GTCTCGTGGGCTCGGCTTCCTAAGGCAGAGGGAGC | 59.5 | 0.08 |
| mm4_intergenic_Arap3|Pcdh1_chr18_38106270_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Arap3|Pcdh1_chr18_38106270_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Tfcp2l1/Gm23497|Gli2_chr1_118801853_F | TCGTCGGCAGCGTCGCTGCCTTTTACCCTCCCAT | 60.0 | 0.05 |
| mm4_intergenic_Tfcp2l1/Gm23497|Gli2_chr1_118801853_R | GTCTCGTGGGCTCGGCTGCTGAAAAGTGCCAACCC | 59.9 | 0.05 |
| mm4_intron_Gpc6_chr14_117579856_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gpc6_chr14_117579856_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Dscam_chr16_97039342_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Dscam_chr16_97039342_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Nbl1_chr4_139083274_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Nbl1_chr4_139083274_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Dnajc13_chr9_104236432_F | TCGTCGGCAGCGTCGTAAAGCCCATGCACGGTTG | 60.1 | 0.04 |
| mm4_intron_Dnajc13_chr9_104236432_R | GTCTCGTGGGCTCGGGTGCAGTCCTGACTTTCCCA | 59.8 | 0.04 |
| mm4_intergenic_Gm25423|Gm26054_chr7_116746092_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm25423|Gm26054_chr7_116746092_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Adrm1_chr2_180171942_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Adrm1_chr2_180171942_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Gpatch4_chr3_88043511_F | TCGTCGGCAGCGTCAACGATTCTCAAGGGCTGGG | 60.0 | 0.03 |
| mm4_exon_Gpatch4_chr3_88043511_R | GTCTCGTGGGCTCGGGCTGTAAGCCTTCCCCACAT | 60.0 | 0.03 |
| mm4_intron_Vps13b_chr15_35914111_F | TCGTCGGCAGCGTCCAGCTCCTGGCAAGTCTGAA | 59.9 | 0.03 |
| mm4_intron_Vps13b_chr15_35914111_R | GTCTCGTGGGCTCGGAACATCGGTGACAGGGACAC | 59.9 | 0.03 |
| mm4_intergenic_Gm25781|Ipo5_chr14_120814497_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25781|Ipo5_chr14_120814497_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Sptbn1_chr11_30161423_F | TCGTCGGCAGCGTCGTTGGCAGCGACAATGGAAG | 60.1 | 0.03 |
| mm4_intron_Sptbn1_chr11_30161423_R | GTCTCGTGGGCTCGGAGGACTGGATAACGCTGCTG | 59.8 | 0.03 |
| mm4_intergenic_Gm24839|Tmem132c_chr5_126756040_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm24839|Tmem132c_chr5_126756040_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_exon_Thumpd3_chr6_113046262_F | TCGTCGGCAGCGTCCGTTCTTCCTCTTCCGGGTC | 60.1 | 0.02 |
| mm3_exon_Thumpd3_chr6_113046262_R | GTCTCGTGGGCTCGGAAGTCAGGCCTCGGAGGG | 60.6 | 0.02 |
| mm3_intergenic_Tug1/TUG1_2/TUG1_1|Tug1_chr11_3648646_F | TCGTCGGCAGCGTCCTCCAACTGGGTCCTAGCAG | 59.4 | 0.02 |
| mm3_intergenic_Tug1/TUG1_2/TUG1_1|Tug1_chr11_3648646_R | GTCTCGTGGGCTCGGGGTCGTCCGGGTGGTTGG | 62.6 | 0.02 |
| mm4_intron_Rpap3_chr15_97705535_F | TCGTCGGCAGCGTCTCAAGCCAAGCCTGCATACC | 60.6 | 0.02 |
| mm4_intron_Rpap3_chr15_97705535_R | GTCTCGTGGGCTCGGCAGGGTTCGGCCTGAGCT | 61.7 | 0.02 |
| mm4_intergenic_1700011I03Rik|Slc12a2_chr18_57878616_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_1700011I03Rik|Slc12a2_chr18_57878616_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Ptgs1_chr2_36230593_F | TCGTCGGCAGCGTCCATGAGTCGTGAGTCCGACC | 60.1 | 0.00 |
| mm4_exon_Ptgs1_chr2_36230593_R | GTCTCGTGGGCTCGGACCAGAGCGAGAGACTCCTT | 59.9 | 0.00 |
| mm4_exon_Gm12827/Rnf220_chr4_117496956_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gm12827/Rnf220_chr4_117496956_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Dlec1_chr9_119121909_F | TCGTCGGCAGCGTCTCATGCCCCAAAAGAGCTGG | 60.6 | 0.00 |
| mm4_exon_Dlec1_chr9_119121909_R | GTCTCGTGGGCTCGGGTTTCTGGTCCCAGGTGTGG | 60.5 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52314003 |
AACCGCCAGAGAAGATGGTGCCCCACGGTTGCCTGAGCCCGCGAGCCGGCCCTCCGACTTCCCGGGAGCGTGGCGGGGGA GGCCAGGAGGAGGAGCCGGTCGATGGACTAGCAGGCAG |
| mm3_intron_Inpp4a_chr1_37366459 |
TGTCATGGGTTCACGAGGTGAGGGTGGGTCGGTTATAGGAACCACCGACTTCCCTGGATTGTGGTACGTGGGTCAGAGGG ACGCCAAGCGTCCTTCTACTGA |
| mm4_intergenic_Rpsa-ps10|Mir3963_chr3_150677303 |
ACGTCTAAATGGCAAGCGGTTCTCAAGCTCCAGGGAAGTCTGAGGTGAGATGGGTTATTAAGAGAAGTATAAGGTGCAGA AGTTAAGGTGGTGGGCACGCATGCCTTTTCAGGAC |
| mm4_intergenic_Rpl31-ps18|Ins1_chr19_51923168 |
TGGTTGGGCTTTATGCAGGAGTAATAGCCACGTTCCTGCAAAGTCGGTGGTGATTCGGTTTTTAAATATTGAATTCTACT TAAAATGAACTATGATGCACAGTAATGCTCTGAGTCCCTGCAAAA |
| mm4_intergenic_Gm23342|Myt1l_chr12_29049731 |
TGCAATATGTCCTTGTTACGACTTTCCCATCAACTTCCCGGGAGTGTTGTATGTTATTAGGCTTTCTATCTCAGGGCAAA AGGCTTTTGTTTGCTGTTTTTTTTTTTTAAAGGCCCTGGACTGGTTTATGA |
| mm4_intergenic_Lipc|Aqp9_chr9_70963548 |
AATGAGAGCAGCTTCCGCTCAGGCTGCAGCAGAGGCTTGGCTCCTCCAGCTTCCCAGGAGGGTGGAAAGCTCAAAGCCAG TTCTGGCTAGTGTGGATTAGAGTTCCCAGCAGCCCAGGCACTGTGTCTTGGAGT |
| mm4_exon_Mmadhc_chr2_50296417 |
GCAGTATAGGCGTGTCCCTCCCCAAAGCCCGGCCTCGGGCCCCGCGTCCCCGGGAAGCCGGGGGACACTAGGGCGCTGGC ACT |
| mm4_intergenic_Igdcc3|Gm25313_chr9_65188730 |
AAGTTGGTGCAGGAGAGCAGCAACTGAGGCAGAAGGCTCTCCTCTGACTTCCCTGGAGCCAGGCCTGGCAGTCTGGTAGC CCTGCACTTAAAAAGCTGGACCGCGACATGAGGACTTTTGCTGCCACCTTG |
| mm4_intron_Itga2b_chr11_102455343 |
CAGGAAACTCTGAGGGCAGGTCTCAGTTTCCTCCGACTTCCCGACAGCAGGGGAAGGGATCTGAAGGCCTGAGGATTTCA GACGTCCTGCTTGGGGGGATGGGAGGGATGGTACATGGCCAGCACAA |
| mm4_intergenic_Agpat2|Fam69b_chr2_26609717 |
GCCCTGTCTGGTAGGCATTTAAGCATGTGGCTGTTGTCCTCCAATCCCCTCCAACTTCCCTGCAGCCTGGTCTGGGACAG ACAGCAGGCTGTTTCCCAACCTCTAGCTATAACTGGTGCCTTCAACAGCT |
| mm4_intergenic_D730003I15Rik|Nenf_chr1_191268706 |
GCCTCCTTGTGTACTCCTGCTTCCTCTGTAATTCAAGGAGTTAACTCAGCAGCCCCACTCTTCTGGGAAGTCAGCGGCGG CCGCTCCTCAGCCCATAGCCTTCTTCTGATGGGATCATGCCC |
| mm4_intron_Dis3l2_chr1_86772418 |
TCTTGAAATGTCTTGCTGTGCAAGAAAGTCTAATATTAACATGTAAGCTTTGGAGAGCCATAGACTTCCCTGGAGAGTGG TAGTCACATACTAAAATATCCCAGCTGGTTGGGTGCATGACTT |
| mm4_intron_Galc_chr12_98234435 |
CCACACTGTGTAGGTTCCAGGATAGTGAGCTCTAAGAGAAAGGGTACAAGAGGAGAAAAGTCAGAAGCCCCACACTTCCG TGAAGTAGGTGGGTGAACTCAAATACAGCTCTTCGCCCAGGTTTGCT |
| mm4_intergenic_Nsmce2|Trib1_chr15_59636198 |
ATCAAAGTGGGTTCAGGGCGCATACCTGTAGCCCTCCGTCTTCCTGGGCCCGTGGAGGGATCTCCTGCCAACCTTGTAGT CTGAGGAAGCCATGGGACAG |
| mm4_intergenic_Gm26474|RP24-351J24.2_chr5_120313450 |
TCCCCAGAGGAAGAGTGGAGGGGTATTCTAGAGTAGTTCCCTCCAAGTCAGCCCCCTGCCATGCTCATGGGCAGTCGGGG GAGCAGGCCACCGCCTGAGCGCCCAGAGGGAGGGACTGAGCAGGCTAATGG |
| mm4_intergenic_Gm25509|n-R5-8s1_chr18_73294214 |
TGTCTCCAAATCCTGCCCAATCATCAGAATCTGAACACAATTGCAACTGTAGATCATAGGTGATCTTCCCTCAGAATTCA CCCTCAATACCCCCGACTCCCCCTGAGCTTGGGTAGCATCCTGAGCCAACCCCATCTTC |
| mm4_exon_Txlna_chr4_129640255 |
GAAAAGCAGAGCTGGCACACACCCTCGGTCTTCCCAGGAGCCTGGCTTGTGGAACCTTCGGCTTCCGCCCCAGGAGCTGT CTGTCTGGGTC |
| mm4_intergenic_Slc4a1|Bloodlinc_chr11_102373811 |
GCCTCACCTATCCTCCCTGAATGCAGTGGGAATGACACTAAGTATGACAAAGCAGGAACTGCATTCCCCCCTGGCCCATC CTCCCCACCCCCACTCTCCCTGGAAATCGTGGGGGGGGGGGCTCCCTCTGCCTTAGGAAG |
| mm4_intergenic_Tfcp2l1/Gm23497|Gli2_chr1_118801853 |
GCTGCCTTTTACCCTCCCATCTTGGCTCCCTGCTTCTAGGTGGTTAGAGCCTGAGACAGCCAGGCTCTCAGGAAGTGGGA GGAAGATGGGGGTTGGCACTTTTCAGCAG |
| mm4_intron_Dnajc13_chr9_104236432 |
GTAAAGCCCATGCACGGTTGAGAAATGGGATGCATCATGAGAAAACCCAAAAGTCCTCCATCCCCGCTCCCTGGAAGTCT CTGGTTTAATGGAGAGGCCTGGCTGGGAAAGTCAGGACTGCAC |
| mm4_exon_Gpatch4_chr3_88043511 |
AACGATTCTCAAGGGCTGGGAAATAAAGCTTGCCTCCGCCTTCCGGGAAGTGTGGTTTTGAATTACTGTGATGAGAAATA GAATGTGGGGAAGGCTTACAGC |
| mm4_intron_Vps13b_chr15_35914111 |
CAGCTCCTGGCAAGTCTGAATTTAAATAGGAAAGCAGACCCAAAGCCACGCTCCTGGGACATGGGTGGGGGAGCACTTCC CTCTCGCTAACCTAATCAGTGTGTCCCTGTCACCGATGTT |
| mm4_intron_Sptbn1_chr11_30161423 |
GTTGGCAGCGACAATGGAAGACAATCCAGAGGGTTTCCAAGCTCAAGCTGTTGCAGCTGGCCAAGCTCAGGGGAAGGCGG TGGGAGGACAGGGAGCAGCAGCGTTATCCAGTCCT |
| mm3_exon_Thumpd3_chr6_113046262 |
CGTTCTTCCTCTTCCGGGTCAGAGTGCACCCAACTGCGCACAGCTCTCCGCGCACACTCCCCCGCCTACCCCGGAGCGTG GGAGCACCGTGCCCTCCGAGGCCTGACTT |
| mm3_intergenic_Tug1/TUG1_2/TUG1_1|Tug1_chr11_3648646 |
CTCCAACTGGGTCCTAGCAGGCCCCGAGGGGTGGCGCCAGGCCTCCAGGCCAGCCCCGGCCACCCCAGCTTCCCCCGCCG CCTCCCCGGGAGCGGGGCGGAGTTGCCCGCCGCCGCCAACCACCCGGACGACC |
| mm4_intron_Rpap3_chr15_97705535 |
TCAAGCCAAGCCTGCATACCCTGGCCTGACGGAGCCCGCAGGTCCGCCGCCCTCGCGGGACCGTGGCTCCGGAGGTCCCG CCACCGCAGACCGCCCGAGCCCGGACGCGGAGCCAGCTCAGGCCGAACCCTG |
| mm4_exon_Ptgs1_chr2_36230593 |
CATGAGTCGTGAGTCCGACCCCAGTGGTGCCCCCACGCGTCCCGGAATTCGGTGGCCTGCAGGCGGAGCCTTGAACGCTA GGCTCAACTCTCTCTTCCTTCTGCAGGAAGGAGTCTCTCGCTCTGGT |
| mm4_exon_Dlec1_chr9_119121909 |
TCATGCCCCAAAAGAGCTGGCCGCCACCGAGTTTCCGGGTGAGTGGCCGTGGACCCCGACCGGGGAAAGGAACGGAACCC ACCCAGGCAACTGAGCTTGGGGGAGGCCACTGAGCCACACCTGGGACCAGAAAC |