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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313998_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313998_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intergenic_Hcrtr1|Tinagl1_chr4_130156886_F | Primer3: not found at this Tm | N.d. | 0.55 |
| mm4_intergenic_Hcrtr1|Tinagl1_chr4_130156886_R | Primer3: not found at this Tm | N.d. | 0.55 |
| mm4_exon_Atg7_chr6_114684439_F | TCGTCGGCAGCGTCACTTCTACTACTGGTTTTGCTGC | 58.9 | 0.48 |
| mm4_exon_Atg7_chr6_114684439_R | GTCTCGTGGGCTCGGGATCCAAGCTCACAGGTCCC | 60.1 | 0.48 |
| mm4_intron_Gna14_chr19_16537829_F | TCGTCGGCAGCGTCAGAAGCTTGCCGCATTACCT | 60.0 | 0.43 |
| mm4_intron_Gna14_chr19_16537829_R | GTCTCGTGGGCTCGGGATGCGTGCTCACTGTAGGT | 60.1 | 0.43 |
| mm4_intron_Osbpl1a_chr18_12840833_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intron_Osbpl1a_chr18_12840833_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm3_exon_Phyhip_chr14_70467338_F | TCGTCGGCAGCGTCAAGATCCCAGCTGCAAGACC | 60.0 | 0.40 |
| mm3_exon_Phyhip_chr14_70467338_R | GTCTCGTGGGCTCGGTAAGCCACACATCACGTCCC | 60.0 | 0.40 |
| mm4_intron_Exoc4_chr6_33583321_F | TCGTCGGCAGCGTCATTTCCTCTGCTACCTGCCC | 59.4 | 0.40 |
| mm4_intron_Exoc4_chr6_33583321_R | GTCTCGTGGGCTCGGCTAACGAGTGCACTGCCAGA | 60.0 | 0.40 |
| mm4_intron_Tiam1_chr16_89928988_F | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intron_Tiam1_chr16_89928988_R | Primer3: not found at this Tm | N.d. | 0.38 |
| mm3_exon_1190002N15Rik_chr9_94538065_F | TCGTCGGCAGCGTCATCGGCTGTCTCCACAACTC | 59.7 | 0.38 |
| mm3_exon_1190002N15Rik_chr9_94538065_R | GTCTCGTGGGCTCGGATAACTTGGCGGGCAAGGAG | 60.3 | 0.38 |
| mm4_intergenic_Efnb3|Wrap53_chr11_69560449_F | TCGTCGGCAGCGTCCCCTTTGTCTCTGGCAGTGT | 59.8 | 0.38 |
| mm4_intergenic_Efnb3|Wrap53_chr11_69560449_R | GTCTCGTGGGCTCGGAGCCTTTCTGGATGCTAGCG | 60.1 | 0.38 |
| mm4_intergenic_Chsy1/Gm26827|Lrrk1_chr7_66196774_F | TCGTCGGCAGCGTCGCTGGGTGGCTGATAAGGTT | 60.0 | 0.36 |
| mm4_intergenic_Chsy1/Gm26827|Lrrk1_chr7_66196774_R | GTCTCGTGGGCTCGGGGCAAGCTCTAAGACGACGA | 59.8 | 0.36 |
| mm4_intergenic_Ces2a|4932416K20Rik_chr8_104794344_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Ces2a|4932416K20Rik_chr8_104794344_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intron_Lgr6_chr1_135021550_F | TCGTCGGCAGCGTCAGTCTCCAAGCTTCATGCCC | 60.0 | 0.32 |
| mm4_intron_Lgr6_chr1_135021550_R | GTCTCGTGGGCTCGGGTGGGTACAAGGTAGTTCAGGG | 60.0 | 0.32 |
| mm3_intron_Camk2g_chr14_20784765_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm3_intron_Camk2g_chr14_20784765_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Gm3571|Gm26239_chr10_93784544_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Gm3571|Gm26239_chr10_93784544_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Sox13|Gm23939_chr1_133492247_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Sox13|Gm23939_chr1_133492247_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intergenic_Zdhhc25|Brd1_chr15_88629238_F | TCGTCGGCAGCGTCAGGCATCCTGACATCCCTCT | 60.0 | 0.25 |
| mm3_intergenic_Zdhhc25|Brd1_chr15_88629238_R | GTCTCGTGGGCTCGGGTCTGCATGCCTCCTGTTCT | 60.0 | 0.25 |
| mm3_intergenic_Tbx4|Gm11443_chr11_85916921_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_Tbx4|Gm11443_chr11_85916921_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Micall1_chr15_79131609_F | TCGTCGGCAGCGTCTTGTGTAGGAGCTGCTAGCC | 59.4 | 0.23 |
| mm4_intron_Micall1_chr15_79131609_R | GTCTCGTGGGCTCGGCATTCTGTGACTTGGGGCCA | 60.2 | 0.23 |
| mm3_intergenic_Arfgef1|Cpa6_chr1_10238988_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm3_intergenic_Arfgef1|Cpa6_chr1_10238988_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Dnase2a/Mast1_chr8_84910761_F | TCGTCGGCAGCGTCCCTACAGGTCCAGTTCTGGC | 59.7 | 0.22 |
| mm4_exon_Dnase2a/Mast1_chr8_84910761_R | GTCTCGTGGGCTCGGGGTCCTCTGTGGCACTGAAA | 59.8 | 0.22 |
| mm4_intergenic_Gm22609|Lrrn2_chr1_132849260_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm22609|Lrrn2_chr1_132849260_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_A930031H19Rik|Gm25261_chr4_131182396_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_A930031H19Rik|Gm25261_chr4_131182396_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Snora24|Ndst3_chr3_123508857_F | TCGTCGGCAGCGTCTTTCTCGAACCGGGAGAACG | 60.0 | 0.21 |
| mm4_intergenic_Snora24|Ndst3_chr3_123508857_R | GTCTCGTGGGCTCGGGCGGGAGTGAGATATGCCTT | 59.6 | 0.21 |
| mm4_intron_Rusc2_chr4_43397025_F | TCGTCGGCAGCGTCTGCAACCCCTCTTTCTGTCC | 59.8 | 0.21 |
| mm4_intron_Rusc2_chr4_43397025_R | GTCTCGTGGGCTCGGGTAACCCACTCTGTGCTCCC | 60.0 | 0.21 |
| mm4_intergenic_Tmie|Tmie/Als2cl_chr9_110878599_F | TCGTCGGCAGCGTCATGAAGGAAGCTGGGATGCC | 60.1 | 0.21 |
| mm4_intergenic_Tmie|Tmie/Als2cl_chr9_110878599_R | GTCTCGTGGGCTCGGTACTCTCCTGTGTACCCCGC | 60.6 | 0.21 |
| mm4_intron_Rpia_chr6_70778052_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Rpia_chr6_70778052_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_exon_D630003M21Rik_chr2_158220471_F | TCGTCGGCAGCGTCACTTGCTCACACAGACGCTT | 60.1 | 0.20 |
| mm3_exon_D630003M21Rik_chr2_158220471_R | GTCTCGTGGGCTCGGCCACTGTCCTGGGTCAAGTG | 60.2 | 0.20 |
| mm3_exon_D10Bwg1379e_chr10_18625208_F | TCGTCGGCAGCGTCCAGCACTGTTCCCACTCAGA | 59.6 | 0.19 |
| mm3_exon_D10Bwg1379e_chr10_18625208_R | GTCTCGTGGGCTCGGCCAGGAGCTTGTTCGGGAAT | 60.0 | 0.19 |
| mm3_intergenic_Gm26124|Gm16391_chr17_76147354_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm3_intergenic_Gm26124|Gm16391_chr17_76147354_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Trib2|mmu-mir-6387_chr12_15797047_F | TCGTCGGCAGCGTCTTAACCAGGCCTGTGATGGG | 59.6 | 0.17 |
| mm4_intergenic_Trib2|mmu-mir-6387_chr12_15797047_R | GTCTCGTGGGCTCGGACAGGGACTACACTACAGGT | 57.0 | 0.17 |
| mm4_intron_Gm11690_chr11_114233130_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Gm11690_chr11_114233130_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Wnt4|Cdc42_chr4_137311069_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Wnt4|Cdc42_chr4_137311069_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_83979161_F | TCGTCGGCAGCGTCGGTAGCCAACTGTGAGCAGA | 59.6 | 0.15 |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_83979161_R | GTCTCGTGGGCTCGGATCCCATTCCCCAGGGTGAT | 60.3 | 0.15 |
| mm4_exon_Tsc22d3_chrX_140542590_F | TCGTCGGCAGCGTCTATTCGGCCTTCTCCTTGCC | 59.8 | 0.15 |
| mm4_exon_Tsc22d3_chrX_140542590_R | GTCTCGTGGGCTCGGGCTGCTGCGTGGTGAAAA | 59.2 | 0.15 |
| mm4_intergenic_Rnf4|Fam193a_chr5_34369843_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Rnf4|Fam193a_chr5_34369843_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm23536|Gm4842_chr18_69241428_F | TCGTCGGCAGCGTCTTCGCTGATGACATGCAGGT | 60.0 | 0.14 |
| mm4_intergenic_Gm23536|Gm4842_chr18_69241428_R | GTCTCGTGGGCTCGGTGGCAAACACCCAGAACAGT | 60.0 | 0.14 |
| mm4_intergenic_Dusp8|Gm25370_chr7_142095882_F | TCGTCGGCAGCGTCTGGTTTGCCTCAGGTCACTC | 59.8 | 0.14 |
| mm4_intergenic_Dusp8|Gm25370_chr7_142095882_R | GTCTCGTGGGCTCGGCGTTTCCAAGCGGCTTTTCA | 59.9 | 0.14 |
| mm3_intergenic_Upf1|Comp_chr8_70358885_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intergenic_Upf1|Comp_chr8_70358885_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Dok6|Gm22694_chr18_89624863_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Dok6|Gm22694_chr18_89624863_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Mras|1600029I14Rik_chr9_99451715_F | TCGTCGGCAGCGTCGAGCCTGGTGACCCGTTG | 60.3 | 0.12 |
| mm4_intergenic_Mras|1600029I14Rik_chr9_99451715_R | GTCTCGTGGGCTCGGCAATCTCTGGGCAAAGCAGC | 59.8 | 0.12 |
| mm4_intron_Tulp4_chr17_6186030_F | TCGTCGGCAGCGTCAGAGCCTTGCATCAGGGAAC | 60.0 | 0.12 |
| mm4_intron_Tulp4_chr17_6186030_R | GTCTCGTGGGCTCGGTTACTCTACAGGGGAGGCCC | 60.0 | 0.12 |
| mm4_exon_AU022252/Gm12898_chr4_119224819_F | TCGTCGGCAGCGTCGATCCCAGCAAAGCCCATCT | 60.1 | 0.12 |
| mm4_exon_AU022252/Gm12898_chr4_119224819_R | GTCTCGTGGGCTCGGCTGTCCTGGTGTTCATGGCT | 59.9 | 0.12 |
| mm4_intergenic_Gm14397|Cdh22_chr2_165164463_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm14397|Cdh22_chr2_165164463_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Pfdn4/Cyp24a1|Gm16796_chr2_170497572_F | TCGTCGGCAGCGTCGGCAAGGTTCCTGAGGACAG | 60.3 | 0.11 |
| mm4_intergenic_Pfdn4/Cyp24a1|Gm16796_chr2_170497572_R | GTCTCGTGGGCTCGGAAAGGAAGTCCAGCTCAGGC | 59.9 | 0.11 |
| mm4_exon_Rps6kc1_chr1_190796730_F | TCGTCGGCAGCGTCAAAGTACAGGCAGGTGGGTG | 59.8 | 0.10 |
| mm4_exon_Rps6kc1_chr1_190796730_R | GTCTCGTGGGCTCGGGGAAAGTCCAGAGGGTGCTG | 60.3 | 0.10 |
| mm3_intron_Nomo1_chr7_46083343_F | TCGTCGGCAGCGTCATATTGCCCTGCCTCTGACG | 59.8 | 0.10 |
| mm3_intron_Nomo1_chr7_46083343_R | GTCTCGTGGGCTCGGACAACTTCCATGACACCGGG | 60.2 | 0.10 |
| mm4_intergenic_Gm24979|Cdc5l_chr17_45222119_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm24979|Cdc5l_chr17_45222119_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm10398|Gm26660_chr14_25170054_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm10398|Gm26660_chr14_25170054_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Tnni3k_chr3_154936774_F | TCGTCGGCAGCGTCTGGATAGACATTTCTCTTCTCTGTT | 57.5 | 0.09 |
| mm4_intron_Tnni3k_chr3_154936774_R | GTCTCGTGGGCTCGGACATGGGTGTGCACTATGCT | 59.6 | 0.09 |
| mm4_intergenic_Tfap2c|Gm22773_chr2_172728342_F | TCGTCGGCAGCGTCTTATTGGCATCCTCGCTGGG | 60.1 | 0.09 |
| mm4_intergenic_Tfap2c|Gm22773_chr2_172728342_R | GTCTCGTGGGCTCGGTGTGTTTAACTCCGCTCCCC | 59.9 | 0.09 |
| mm4_intergenic_Fmod|Btg2_chr1_134057167_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Fmod|Btg2_chr1_134057167_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Unc5b|mmu-mir-6408_chr10_60862400_F | TCGTCGGCAGCGTCAACAACCCAGCCTAGGATGC | 60.0 | 0.08 |
| mm4_intergenic_Unc5b|mmu-mir-6408_chr10_60862400_R | GTCTCGTGGGCTCGGGGTAGCAACTTCCTCCTGGG | 59.7 | 0.08 |
| mm4_intergenic_Gm8358|n-R5s63_chr12_82545558_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm8358|n-R5s63_chr12_82545558_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Ehd1|Cdc42bpg_chr19_6306396_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ehd1|Cdc42bpg_chr19_6306396_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Brinp3|Gm15583_chr1_146702041_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Brinp3|Gm15583_chr1_146702041_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Slitrk1|Gm25901_chr14_109362907_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Slitrk1|Gm25901_chr14_109362907_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Mslnl_chr17_25745074_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Mslnl_chr17_25745074_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Tspyl3_chr2_153223013_F | TCGTCGGCAGCGTCGAGCAAGGCCTTTCGTGAGA | 60.3 | 0.06 |
| mm4_exon_Tspyl3_chr2_153223013_R | GTCTCGTGGGCTCGGCTCCTCCTCTGCCCCTCTAC | 60.4 | 0.06 |
| mm4_intergenic_Zfp622|March11_chr15_26135075_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Zfp622|March11_chr15_26135075_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Inadl_chr4_98699655_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Inadl_chr4_98699655_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Plekhh1_chr12_79074635_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Plekhh1_chr12_79074635_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_1700025C18Rik_chr2_165079175_F | TCGTCGGCAGCGTCGTATGATCACGGCCACCAGT | 59.8 | 0.05 |
| mm4_intron_1700025C18Rik_chr2_165079175_R | GTCTCGTGGGCTCGGCCAAGAACCACACTCCACCA | 59.8 | 0.05 |
| mm4_intron_Rap1gap_chr4_137667735_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Rap1gap_chr4_137667735_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Kcng2|Ctdp1_chr18_80393991_F | TCGTCGGCAGCGTCGTCTCCTTGTTCCCCAGGTG | 59.9 | 0.04 |
| mm4_intergenic_Kcng2|Ctdp1_chr18_80393991_R | GTCTCGTGGGCTCGGCCTGTCCCTGGAGAGACACT | 60.2 | 0.04 |
| mm4_intergenic_Ndufc1|Naa15_chr3_51415887_F | TCGTCGGCAGCGTCGAGCCAACTCTGAAATCCGC | 59.2 | 0.04 |
| mm4_intergenic_Ndufc1|Naa15_chr3_51415887_R | GTCTCGTGGGCTCGGCTCTTCCCCACCCTCGATG | 59.1 | 0.04 |
| mm4_intron_Fez1_chr9_36869897_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Fez1_chr9_36869897_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Uck2_chr1_167273734_F | TCGTCGGCAGCGTCAAGCCCAAGTACGAACAGCA | 59.8 | 0.04 |
| mm4_intron_Uck2_chr1_167273734_R | GTCTCGTGGGCTCGGTGCTGAGCTTGTACACCCAC | 60.2 | 0.04 |
| mm4_intergenic_Olfr1387|Olfr1386_chr11_49469390_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Olfr1387|Olfr1386_chr11_49469390_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Brap_chr5_121660898_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Brap_chr5_121660898_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Jarid2_chr13_44851729_F | TCGTCGGCAGCGTCACAACTGAGTGCTCCTGTGG | 59.8 | 0.04 |
| mm4_intron_Jarid2_chr13_44851729_R | GTCTCGTGGGCTCGGGGGTGGAAGGTCAAGAATAAGGA | 59.7 | 0.04 |
| mm4_intergenic_Adora1/Mybph|Adora1_chr1_134228417_F | TCGTCGGCAGCGTCTTAAGGTCCTGCCCCTCCAG | 60.9 | 0.03 |
| mm4_intergenic_Adora1/Mybph|Adora1_chr1_134228417_R | GTCTCGTGGGCTCGGCCTTCCTCCCCTTTCGCATT | 60.0 | 0.03 |
| mm4_intron_Gas2_chr7_51869398_F | TCGTCGGCAGCGTCCACCATGGTCACAGCAGGTA | 59.6 | 0.03 |
| mm4_intron_Gas2_chr7_51869398_R | GTCTCGTGGGCTCGGTGTTCACAGCAGACCAGACA | 59.1 | 0.03 |
| mm3_intergenic_Gm23979|Gm22845_chr12_9653321_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Gm23979|Gm22845_chr12_9653321_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Limch1_chr5_66764363_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Limch1_chr5_66764363_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Kcnk12_chr17_87797099_F | TCGTCGGCAGCGTCGCTCACCTATGGTCGACACC | 60.1 | 0.03 |
| mm4_exon_Kcnk12_chr17_87797099_R | GTCTCGTGGGCTCGGCTTCCTCCGGCACTACGAG | 59.5 | 0.03 |
| mm4_intron_Dnah5_chr15_28356459_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Dnah5_chr15_28356459_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Bcs1l_chr1_74591828_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Bcs1l_chr1_74591828_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gripap1_chrX_7804276_F | TCGTCGGCAGCGTCTCACTCCTCTTCCTGCTTTTCC | 59.9 | 0.02 |
| mm4_intron_Gripap1_chrX_7804276_R | GTCTCGTGGGCTCGGGTGGGCAAAAGGAACTGCAG | 59.9 | 0.02 |
| mm4_intergenic_Gabrg2|Gabra1_chr11_42044973_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gabrg2|Gabra1_chr11_42044973_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Agtr1a_chr13_30367445_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Agtr1a_chr13_30367445_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm8935|Gm2464_chr3_13142761_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm8935|Gm2464_chr3_13142761_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Tpd52_chr3_8954483_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Tpd52_chr3_8954483_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Bcl9l|Cxcr5_chr9_44511059_F | TCGTCGGCAGCGTCGCCATGCACCAGATCTGTCT | 60.1 | 0.02 |
| mm4_intergenic_Bcl9l|Cxcr5_chr9_44511059_R | GTCTCGTGGGCTCGGGCCAAAGGGGACAAAACACC | 59.8 | 0.02 |
| mm4_intron_Stpg2_chr3_139630771_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Stpg2_chr3_139630771_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tpk1|Gm22939_chr6_43755370_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tpk1|Gm22939_chr6_43755370_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Mc2r|mmu-mir-6356_chr18_68573427_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Mc2r|mmu-mir-6356_chr18_68573427_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23859|Eif3s6-ps2_chr18_90265032_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23859|Eif3s6-ps2_chr18_90265032_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ankrd26|Cacna1c_chr6_118568266_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ankrd26|Cacna1c_chr6_118568266_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm6395|Gm527_chr12_64896330_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm6395|Gm527_chr12_64896330_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Grhl2_chr15_37352500_F | TCGTCGGCAGCGTCCAACTCAGCCCCAGTCACAG | 60.6 | 0.01 |
| mm4_intron_Grhl2_chr15_37352500_R | GTCTCGTGGGCTCGGCCAGGTCGTGGTTCTCAAAC | 58.7 | 0.01 |
| mm4_intron_Clec10a_chr11_70165032_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Clec10a_chr11_70165032_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tox3|Chd9_chr8_90713466_F | TCGTCGGCAGCGTCATGACCCAAGGACCAGTTCC | 59.3 | 0.01 |
| mm4_intergenic_Tox3|Chd9_chr8_90713466_R | GTCTCGTGGGCTCGGGCCATATGGGTCTGTGCCAT | 60.1 | 0.01 |
| mm4_intergenic_Gm22673|Gm23059_chr12_60619985_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm22673|Gm23059_chr12_60619985_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm16157|Fam169b_chr7_68275887_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm16157|Fam169b_chr7_68275887_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Mepe_chr5_104334102_F | TCGTCGGCAGCGTCACGGCACTGTACTTCATGAGG | 60.0 | 0.00 |
| mm3_intron_Mepe_chr5_104334102_R | GTCTCGTGGGCTCGGAGCCTGTCATAGTAACTGCGT | 59.1 | 0.00 |
| mm4_intron_Dmbx1_chr4_115929341_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dmbx1_chr4_115929341_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tst|Mpst_chr15_78406029_F | TCGTCGGCAGCGTCTGGGAGAGGTTGGCACATTC | 59.9 | 0.00 |
| mm4_intergenic_Tst|Mpst_chr15_78406029_R | GTCTCGTGGGCTCGGTCCTAGGCACCAGAAAGGGA | 59.8 | 0.00 |
| mm4_intron_Fmn1_chr2_113362011_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fmn1_chr2_113362011_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tex29|A230072I06Rik_chr8_12172185_F | TCGTCGGCAGCGTCAGCTGGAGGAGGTTTTGACG | 59.9 | 0.00 |
| mm4_intergenic_Tex29|A230072I06Rik_chr8_12172185_R | GTCTCGTGGGCTCGGCTGGGGAAGAAAGAGCATCCA | 59.7 | 0.00 |
| mm4_intergenic_Gnai1|Gm17037_chr5_18361959_F | TCGTCGGCAGCGTCGCCCCTTCCCTTTGAAAAGC | 59.6 | 0.00 |
| mm4_intergenic_Gnai1|Gm17037_chr5_18361959_R | GTCTCGTGGGCTCGGGGGCTCCAGTGCTCAGTTC | 60.3 | 0.00 |
| mm4_intergenic_Gm8036|Il1rapl2_chrX_137436330_F | TCGTCGGCAGCGTCCTTTCCCCAGCTCAACACCT | 59.8 | 0.00 |
| mm4_intergenic_Gm8036|Il1rapl2_chrX_137436330_R | GTCTCGTGGGCTCGGTGCTTGAGGAGGCACTTGAG | 59.9 | 0.00 |
| mm4_intergenic_Gm25011|Gm23680_chr10_12107142_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25011|Gm23680_chr10_12107142_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23795|Gm5342_chr7_69176187_F | TCGTCGGCAGCGTCCCAGACCTTTGCACCTGTGA | 60.1 | 0.00 |
| mm4_intergenic_Gm23795|Gm5342_chr7_69176187_R | GTCTCGTGGGCTCGGGGGCAAACTCTTTCCCTGGA | 59.8 | 0.00 |
| mm4_intergenic_Btla|Cd200_chr16_45287238_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Btla|Cd200_chr16_45287238_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ankrd45|Prdx6_chr1_161232931_F | TCGTCGGCAGCGTCGCTTAGTTCTTCTGCTCCTTGC | 59.5 | 0.00 |
| mm4_intergenic_Ankrd45|Prdx6_chr1_161232931_R | GTCTCGTGGGCTCGGAGAGAAGGGCACGGCTAGTA | 60.0 | 0.00 |
| mm3_intergenic_Camta1|4930589P08Rik_chr4_151317934_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Camta1|4930589P08Rik_chr4_151317934_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_exon_Atg7_chr6_114684439 |
ACTTCTACTACTGGTTTTGCTGCCCCGCCCTCTGTCTTCCTGAGAGCATCCCTCTAATCCGGGGACCTGTGAGCTTGGAT C |
| mm4_intron_Gna14_chr19_16537829 |
AGAAGCTTGCCGCATTACCTGGAAGCCCGTTCCAGAAGCTCCCCAGCCCTCTGGCTTCCAGGGACTGTGCTCGACAGCTT TATGTAACTCACCTACAGTGAGCACGCATC |
| mm3_exon_Phyhip_chr14_70467338 |
AAGATCCCAGCTGCAAGACCTGCAACATCAGCGTGGGCCGCTAGGGACTCCTGGGGAGCCGGAGGGCAGGAGGGTGGGAC GTGATGTGTGGCTTA |
| mm4_intron_Exoc4_chr6_33583321 |
ATTTCCTCTGCTACCTGCCCACTCTGTCTAACATCACCAGCACTCTGTCTTCCTGGGAGGTTGCATATGGCTGGTACACT TCCTTTATGGAGACAGCACTTTGGTAACTTCTGTTTATCTGGCAGTGCACTCGTTAG |
| mm3_exon_1190002N15Rik_chr9_94538065 |
ATCGGCTGTCTCCACAACTCCCGGTGCCCTCCTCCGAGCTCCCCGCCCTCCGACTCCGCGGGCGCCGCCTCCTTGCCCGC CAAGTTAT |
| mm4_intergenic_Efnb3|Wrap53_chr11_69560449 |
CCCTTTGTCTCTGGCAGTGTCCGTCTCTGGCTGAGTTTCTACTTGCTTTCCTTCCTGCCCTCCGATTGCCCGAGCGTTTG GAATCTTCCTCGCTAGCATCCAGAAAGGCT |
| mm4_intergenic_Chsy1/Gm26827|Lrrk1_chr7_66196774 |
GCTGGGTGGCTGATAAGGTTATCTGGGGACTGTTTCTGGCAGTTCAAGTGCCTGTTGTACAACTTGGGGCTGGGGAAGTC GGAGGGCTGGGCAGGGCGGGGACTTCGTCGTCTTAGAGCTTGCC |
| mm4_intron_Lgr6_chr1_135021550 |
AGTCTCCAAGCTTCATGCCCCAGTCCCTCTGCCTTGTTAACTGTTTCCTTCTACGCATTATTTGATGTCTCTGCTAGCAG GGACCCTGCCCTCCTACTTCCTGGGCTACCTACCCTGAACTACCTTGTACCCAC |
| mm3_intergenic_Zdhhc25|Brd1_chr15_88629238 |
AGGCATCCTGACATCCCTCTGCAGACCAGGCGGCCTCCCACCCTCCCTCCGCCTTCCTGGGAGCTGCTACTATTGGGGGT TGGTTTTCAATCGCAAGGTCCATCCATGCTGGAGAACAGGAGGCATGCAGAC |
| mm4_intron_Micall1_chr15_79131609 |
TTGTGTAGGAGCTGCTAGCCCTGTCTCTGCCCCACGCCTGTCCTCAGACTGGTTCTTACCGTCTGTCTCTGTGACTGAAG TATTACCTCTTCATTCACCCGGGAACTTGGAAGGCTGGAATGGCCCCAAGTCACAGAATG |
| mm4_exon_Dnase2a/Mast1_chr8_84910761 |
CCTACAGGTCCAGTTCTGGCAAAATTCTCCAGGCATCCTGCCCTCCAACTGCTCTGGAGCCTATCAGGTTCTGGATGTGA CACAGACAGGATTCCCTGGCCCATCTAGACTAACTTTCAGTGCCACAGAGGACC |
| mm4_intergenic_Snora24|Ndst3_chr3_123508857 |
TTTCTCGAACCGGGAGAACGGGAAGCCTGGGCAGTGCGAGCAGACCCGCCCGGCCCTCGGCTTTTCCGGGAGGAAGGCAT ATCTCACTCCCGC |
| mm4_intron_Rusc2_chr4_43397025 |
TGCAACCCCTCTTTCTGTCCTGACCCATAGCATCCAGGGAAGTCAGAGGGAGGGATGTCCCCGAGGACTTGAAAACTGGG AGTGGAGGGAAAGGCCCTGTGGGAGCACAGAGTGGGTTAC |
| mm4_intergenic_Tmie|Tmie/Als2cl_chr9_110878599 |
ATGAAGGAAGCTGGGATGCCCCTTTCTTCCTCCCAGGCAGGCAGAGGGCAGGGGTTAGAGAAGTAGGTATCTGGGGGATG GTGCATCCTCGGGGGTAGGGGAGGTGGGAGCGGGGTACACAGGAGAGTA |
| mm3_exon_D630003M21Rik_chr2_158220471 |
ACTTGCTCACACAGACGCTTGGCAGGGATGAGAAAATCCAAGAGGAAGCTCAGTCCATCTCCCCGGAAGTCGGAGTCCAG GAGCCGGAACACTTGACCCAGGACAGTGG |
| mm3_exon_D10Bwg1379e_chr10_18625208 | CAGCACTGTTCCCACTCAGACTACCTCCCCGGAAGTCCGAGGTCCGGCCACGGCTACATTCCCGAACAAGCTCCTGG |
| mm4_intergenic_Trib2|mmu-mir-6387_chr12_15797047 |
TTAACCAGGCCTGTGATGGGGAAGGAGAGACAACAGGAATGAAACCCTCCCTCCACCTTCTCGGGAGGAACTCCACAGAA TTTATGCTATGCCAAATCTTTAAACCTGTAGTGTAGTCCCTGT |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_83979161 |
GGTAGCCAACTGTGAGCAGACAGCAAGACTGGGAAGTGTACTTTCTGCCTCTGAAACAACCTGCCCCCATCAGGAGGCTA AACTCCAGGGAGGTCAGAGGTCGGGGAATTTTTTTTTGGATCACCCTGGGGAATGGGAT |
| mm4_exon_Tsc22d3_chrX_140542590 |
TATTCGGCCTTCTCCTTGCCCCAGCCTTGCCTAGCTCGCCGGCCCTCTGCCTTCCCGGCTGCAGCTGCTGTTTTTCACCA CGCAGCAGC |
| mm4_intergenic_Gm23536|Gm4842_chr18_69241428 |
TTCGCTGATGACATGCAGGTGTGCACGGGTGTGGTACTCAGTCTTGACGCTTTCGTGTTCTCCTGGGTGGTTGGAGGGCC GGCTCCATTAGTTTGTGGCCTTGTGAGAATATATAAAACTGTTCTGGGTGTTTGCCA |
| mm4_intergenic_Dusp8|Gm25370_chr7_142095882 |
TGGTTTGCCTCAGGTCACTCATCCCGGGAAATCAGGGGGCGGGGCTCCAGACCCACCGGTGTGCTCCCCAGGGCGGCGCT GCCCCCCTACCTATGACATCCAGTTCTTGACAGCTTCCAATGAAAAGCCGCTTGGAAACG |
| mm4_intergenic_Mras|1600029I14Rik_chr9_99451715 |
GAGCCTGGTGACCCGTTGGCTCCCGGGAGGAAGGAGGACAGGAGGGAGAGCAAGAGTTAGTCTATGTCTTTGTCATTTTG CATCAGTACACTGATAGAACCTCTCTGGCCTCGCTGCTTTGCCCAGAGATTG |
| mm4_intron_Tulp4_chr17_6186030 |
AGAGCCTTGCATCAGGGAACACACTCCAGAGAAGACTGAGGGCAGGAAGGGTGGGCTGCAGTCACAGGCTTTGTATGTGG TGGTGAAAGTGGGCCTCCCCTGTAGAGTAA |
| mm4_exon_AU022252/Gm12898_chr4_119224819 |
GATCCCAGCAAAGCCCATCTTCCAGCCCTGCAGCTTCCAGGGAGGGCGGTTTCTGCACGTCCCTTGTTAGATCTCAGTTC TTGTGCTAGGCATGGATGTTTCTAGCTCGTAAGTGAAGCCATGAACACCAGGACAG |
| mm4_intergenic_Pfdn4/Cyp24a1|Gm16796_chr2_170497572 |
GGCAAGGTTCCTGAGGACAGTGCGGAAGACCGCCCGCGCTTGCCAAGAGAGTGGAGAGCGAGCCTGCCTCCCAACATCCC GGGAGACAAGTTTTCGTAGCCTGAGCTGGACTTCCTTT |
| mm4_exon_Rps6kc1_chr1_190796730 |
AAAGTACAGGCAGGTGGGTGATGGTTTTTGAACAAACAGCTGATAAGGATCCCGGGAGGGAGGAGGGCAGGGGCAGGCCA CACTGGATAAACAGAGGGCAGAGCTCCCCTCAGCACCCTCTGGACTTTCC |
| mm3_intron_Nomo1_chr7_46083343 |
ATATTGCCCTGCCTCTGACGCTGCTGCTCCTGTTGGCGGGCTACAACCATGACAAGGTAGGGAAGCCAAGGCCTCATGGG AAGTCGGGGGGCAGGAGATAGGCTATGGGAGGGTGCCCGGTGTCATGGAAGTTGT |
| mm4_intron_Tnni3k_chr3_154936774 |
TGGATAGACATTTCTCTTCTCTGTTATGATGTGAAATCTCCTGGGAAGTTGGAGAGTGGGGCATGTATAAATTTCATTTT GCACATGGAAATGTACCATATGCAATCATCTGTAAGCATAGTGCACACCCATGT |
| mm4_intergenic_Tfap2c|Gm22773_chr2_172728342 |
TTATTGGCATCCTCGCTGGGCCCTGTGTGAGAACGCGCCGGCCTGGCCCTGCAGAGGGGCCAACGTCTATTACATTCCAA TAAGTGTCGCCCGGGAGGGAGGAGGGCGGGGCGGGGAGCGGAGTTAAACACA |
| mm4_intergenic_Unc5b|mmu-mir-6408_chr10_60862400 |
AACAACCCAGCCTAGGATGCCCACTGAAAGCTCAAACCCAAGCCTCTGAACCTGAAAACTGCCCCCGTGCCAGCCATTCT GCTTCCCGGGAGAGAATGGGGCTCCCAGGAGGAAGTTGCTACC |
| mm4_exon_Tspyl3_chr2_153223013 |
GAGCAAGGCCTTTCGTGAGATGACAACCTGGGGGGAACTCGGAGGGCAGGGCAGTTTAGCCTTTTATCTATAGGAACCCA CAAGGGGTAGAGGGGCAGAGGAGGAG |
| mm4_intron_1700025C18Rik_chr2_165079175 |
GTATGATCACGGCCACCAGTTAATTAGTGATCAATGGCCTACAGGGAAGTGAGAGGGCGGGTGGCTGTGGTGGAGTGTGG TTCTTGG |
| mm4_intergenic_Kcng2|Ctdp1_chr18_80393991 |
GTCTCCTTGTTCCCCAGGTGCAAATCTGAACTGACTTTTCTGGAACAAGCCATCTTCTCCAGGGAAGTGGGAAGTCAGGA AGCAGCATCCTGGGAAGTGACCAGGATGCCTTAGTGTCTCTCCAGGGACAGG |
| mm4_intergenic_Ndufc1|Naa15_chr3_51415887 |
GAGCCAACTCTGAAATCCGCGGCTCCGCAGGCCGGCCCGGCCTCCGCGTTCCCGGCAGGCTCCGGTGCATCGAGGGTGGG GAAGAG |
| mm4_intron_Uck2_chr1_167273734 |
AAGCCCAAGTACGAACAGCACTATCCATATCTCCCAGCAGTCAATGAGACAAACAGGCTGAAATGCTCAACCAGTGTCTG AGGGCTCCAGGGCAGTTGGGGGGCGGGGGGGTGGGTGTACAAGCTCAGCA |
| mm4_intron_Jarid2_chr13_44851729 |
ACAACTGAGTGCTCCTGTGGGGTTTTTGTTTATATGTTAATTAATTGAAAGAGGTTGTTCAGGCTGTCTTTGACCCTGCC CTCAGCCTTCCCAGCAGTGTAATTAGTTATGTGTCCTTATTCTTGACCTTCCACCC |
| mm4_intergenic_Adora1/Mybph|Adora1_chr1_134228417 |
TTAAGGTCCTGCCCCTCCAGCTCGGAAGAGCAAATAGGATGATAAATACCAGATGCCTCCTGGGAAGTCGCAGAGTAGGT GAAATGCGAAAGGGGAGGAAGG |
| mm4_intron_Gas2_chr7_51869398 |
CACCATGGTCACAGCAGGTAGACAAAGGTTTCTTAAGCAAAGCTCTCCCAACCCTCCCACTTCCCGGTAAAGTTCTCTCA CTTTGGGTTTGGAGTGCTACTCATTTCAGTATTCTGTCTGGTCTGCTGTGAACA |
| mm4_exon_Kcnk12_chr17_87797099 |
GCTCACCTATGGTCGACACCACGGTGCCCACGAAGTAGAAGGCTCCAGGGAAGTCCCAGCGCGGGCGCAGCGCGTCGGCG CGGACCCCGGCGGCCAGCGCGGCCTCGTAGTGCCGGAGGAAG |
| mm4_intron_Gripap1_chrX_7804276 |
TCACTCCTCTTCCTGCTTTTCCATTTTAAACGTTGTCTTTCTTCCTCCCTTTATACTTCTCTCTCTGTCTCCCCGGAACT GGGAGGTCCGGGGTTCCTGGGCCTTAGGGCCCCCTGCAGTTCCTTTTGCCCAC |
| mm4_intergenic_Bcl9l|Cxcr5_chr9_44511059 |
GCCATGCACCAGATCTGTCTATGCCCACCAGACACAGCCACTGCCTCTCCTCTGACTTCCCAGGAGAGCCCCTCACCCGC CCCTGGTCAGACTCAAGCCATACAGGAATGGGTGTTTTGTCCCCTTTGGC |
| mm4_intron_Grhl2_chr15_37352500 |
CAACTCAGCCCCAGTCACAGCCTTTGCTTCTGGCCCCACCCCCTGTGGCCTCCCCTCAGATTTCCTGGGAGTGGATGAGC AATCACAAAAACAGCAAGTTCTTTGCTTGAACACTGATGTTTGAGAACCACGACCTGG |
| mm4_intergenic_Tox3|Chd9_chr8_90713466 |
ATGACCCAAGGACCAGTTCCAACTCTCACGGGAGGGCGGAGGGGGGGGGGGGGCTGTATCTTTTAGAAGTTACAGAAAGT CAGTCTGGGAGAAAATGGCACAGACCCATATGGC |
| mm3_intron_Mepe_chr5_104334102 |
ACGGCACTGTACTTCATGAGGGGGTTTCTGAGCATATTCTAGACCATATGCTAGAACAGTGTAGACTCCCGGGGAGTCGG GGGGGGGGGAACGCAGTTACTATGACAGGCT |
| mm4_intergenic_Tst|Mpst_chr15_78406029 |
TGGGAGAGGTTGGCACATTCCCTAGGGAAAGCCTGCTCCACCCCTCCCACTTCCCCGGCGCCCTCCCTTTCTGGTGCCTA GGA |
| mm4_intergenic_Tex29|A230072I06Rik_chr8_12172185 | AGCTGGAGGAGGTTTTGACGGCTCCCTGGAAGACGGCGGGAAGGTGGATGCTCTTTCTTCCCCAG |
| mm4_intergenic_Gnai1|Gm17037_chr5_18361959 |
GCCCCTTCCCTTTGAAAAGCTCGTCAAGGACATGAGGAAATAATCCTCACTTCTGAGAGGATGTTGGAAGAACTCTCCAG GGAAGCTGGTGGGCAGGGAACTGAGCACTGGAGCCC |
| mm4_intergenic_Gm8036|Il1rapl2_chrX_137436330 |
CTTTCCCCAGCTCAACACCTGCCTTGCCACTCCTGGGAAGTAGGTTGGCTGGTTGCAATTAAACTCAAGTGCCTCCTCAA GCA |
| mm4_intergenic_Gm23795|Gm5342_chr7_69176187 |
CCAGACCTTTGCACCTGTGAAAGGCACATTTGTTCCCAGGGATGCCCTCCCTGGCCCTTCTCCCAGGAAGTGGGCAGGCA GGGTGGGTGTCAGTTTTCTGTGTCTAGTTGCTCCAGGGAAAGAGTTTGCCC |
| mm4_intergenic_Ankrd45|Prdx6_chr1_161232931 |
GCTTAGTTCTTCTGCTCCTTGCATCCCGGGAGGCCGGTGGGCAGGCTGGTCTTAAGTAGTGATCCTCAGTATAGGTGTGA AGGCAATCCAAGGCTTACTAGCCGTGCCCTTCTCT |