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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313958_F | TCGTCGGCAGCGTCAATTTGTCCGAAGCCGTGAG | 58.8 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313958_R | GTCTCGTGGGCTCGGCTCCTCCTCCTGGCCTCC | 60.4 | 1.00 |
| mm3_intergenic_D5Ertd579e|Bloc1s4_chr5_36731962_F | TCGTCGGCAGCGTCCACCCACTCTGGAAAGGACC | 59.9 | 0.60 |
| mm3_intergenic_D5Ertd579e|Bloc1s4_chr5_36731962_R | GTCTCGTGGGCTCGGCTTCTGTGTAGAGCCCTGGC | 60.1 | 0.60 |
| mm3_exon_Rbm38/Gm20490_chr2_173022634_F | TCGTCGGCAGCGTCGGGATTGTCGCTGTCCTTGA | 60.0 | 0.56 |
| mm3_exon_Rbm38/Gm20490_chr2_173022634_R | GTCTCGTGGGCTCGGGGCCATCTCTGGGTCTTTCC | 60.1 | 0.56 |
| mm3_intron_Cct5_chr15_31599602_F | Primer3: not found at this Tm | N.d. | 0.53 |
| mm3_intron_Cct5_chr15_31599602_R | Primer3: not found at this Tm | N.d. | 0.53 |
| mm3_intron_Col27a1_chr4_63279562_F | TCGTCGGCAGCGTCCTGACTGCATGGCCTCCTTT | 60.3 | 0.52 |
| mm3_intron_Col27a1_chr4_63279562_R | GTCTCGTGGGCTCGGATCCGCAAGAGCTTGGTCTC | 60.1 | 0.52 |
| mm4_intergenic_Gm12861|Gm24352_chr4_118975095_F | TCGTCGGCAGCGTCCTCCACATAGGGACCTGGGA | 60.0 | 0.48 |
| mm4_intergenic_Gm12861|Gm24352_chr4_118975095_R | GTCTCGTGGGCTCGGTGTGCCTGTTGTCCTTGTCA | 59.7 | 0.48 |
| mm4_intron_Smurf1_chr5_144912437_F | TCGTCGGCAGCGTCACAGAACCATCAGTGTCCATGA | 59.3 | 0.44 |
| mm4_intron_Smurf1_chr5_144912437_R | GTCTCGTGGGCTCGGTGCTTCTTCCAGCCTCATGG | 60.0 | 0.44 |
| mm3_intergenic_Zdhhc15|Gm14822_chrX_104746452_F | Primer3: not found at this Tm | N.d. | 0.43 |
| mm3_intergenic_Zdhhc15|Gm14822_chrX_104746452_R | Primer3: not found at this Tm | N.d. | 0.43 |
| mm4_intergenic_Gm25799|Slit3_chr11_34904882_F | TCGTCGGCAGCGTCAATACAGAACAGGCACTCAAGT | 57.6 | 0.43 |
| mm4_intergenic_Gm25799|Slit3_chr11_34904882_R | GTCTCGTGGGCTCGGGTGTGTGCTATGCATCCCC | 58.5 | 0.43 |
| mm3_intergenic_1700040L02Rik|Tmem26_chr10_68697732_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm3_intergenic_1700040L02Rik|Tmem26_chr10_68697732_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm3_intron_Kdm3a_chr6_71611147_F | TCGTCGGCAGCGTCTGGTGGCTCAAACAGTTTCTG | 58.9 | 0.40 |
| mm3_intron_Kdm3a_chr6_71611147_R | GTCTCGTGGGCTCGGGGCCTTGGCGTACTCAGTTT | 60.6 | 0.40 |
| mm4_intron_Porcn_chrX_8201131_F | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intron_Porcn_chrX_8201131_R | Primer3: not found at this Tm | N.d. | 0.38 |
| mm3_exon_Igfn1_chr1_135968832_F | TCGTCGGCAGCGTCGCATTGCCAGACACTTGAGC | 60.1 | 0.36 |
| mm3_exon_Igfn1_chr1_135968832_R | GTCTCGTGGGCTCGGTTTCTTGGTGCCAGGACCTC | 59.8 | 0.36 |
| mm4_intergenic_Gm22507|Trhde_chr10_114384690_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Gm22507|Trhde_chr10_114384690_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intron_Tmprss15_chr16_78968397_F | TCGTCGGCAGCGTCTGGGAGCATTGTAGACTATAAGAGA | 58.6 | 0.34 |
| mm4_intron_Tmprss15_chr16_78968397_R | GTCTCGTGGGCTCGGAGCACAGCCCTATTTTGAACA | 58.1 | 0.34 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202170_F | TCGTCGGCAGCGTCCAGAGAAGGTGGTGCTCCAG | 60.0 | 0.33 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202170_R | GTCTCGTGGGCTCGGCACCTTCTCTGGAGCACCAC | 60.3 | 0.33 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202153_F | TCGTCGGCAGCGTCGTGGTGCTCCAGAGAAGGTG | 60.3 | 0.33 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202153_R | GTCTCGTGGGCTCGGCTGGAGCACCACCTTCTCTG | 60.0 | 0.33 |
| mm4_intron_Zfpm2_chr15_40955306_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intron_Zfpm2_chr15_40955306_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm2_intergenic_Fam170a|Hdhd1a_chr18_50350852_F | TCGTCGGCAGCGTCGCTCACAGCATAGAACTCCA | 57.3 | 0.33 |
| mm2_intergenic_Fam170a|Hdhd1a_chr18_50350852_R | GTCTCGTGGGCTCGGAACACACTGTGCCAAGGGAT | 59.8 | 0.33 |
| mm4_intron_Dennd2a_chr6_39470649_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intron_Dennd2a_chr6_39470649_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Glrx3|Gm25798_chr7_137985996_F | TCGTCGGCAGCGTCTGACTCAAACTGGCATTGATAACA | 58.9 | 0.32 |
| mm4_intergenic_Glrx3|Gm25798_chr7_137985996_R | GTCTCGTGGGCTCGGGGGGTCGGTCAGTTCTTCAG | 60.0 | 0.32 |
| mm4_intergenic_Gm24710|Gm24889_chr10_37934140_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Gm24710|Gm24889_chr10_37934140_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Tspan3|C230081A13Rik_chr9_56162070_F | TCGTCGGCAGCGTCCGGGACCTCTTTACCTGTCC | 59.4 | 0.31 |
| mm4_intergenic_Tspan3|C230081A13Rik_chr9_56162070_R | GTCTCGTGGGCTCGGGATGCTGAGGTGCTTGGGTA | 59.7 | 0.31 |
| mm4_intron_Wwox_chr8_114765170_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intron_Wwox_chr8_114765170_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Chst15|Oat_chr7_132429412_F | TCGTCGGCAGCGTCTTCAGTCTTTGGCCCTCAGC | 60.2 | 0.29 |
| mm4_intergenic_Chst15|Oat_chr7_132429412_R | GTCTCGTGGGCTCGGCTACACGAGAGCCAAGCCTC | 60.1 | 0.29 |
| mm4_intergenic_Abcc9|Cmas_chr6_142723917_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Abcc9|Cmas_chr6_142723917_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_Gprin2_chr14_34199105_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_Gprin2_chr14_34199105_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intergenic_Gm13991|Gm13990_chr2_116771455_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intergenic_Gm13991|Gm13990_chr2_116771455_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intron_Chchd6_chr6_89439875_F | TCGTCGGCAGCGTCTTGTCACCATCCTTCCTGCC | 59.9 | 0.26 |
| mm3_intron_Chchd6_chr6_89439875_R | GTCTCGTGGGCTCGGTCCTGTCACACCCCACCTTA | 60.1 | 0.26 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202321_F | TCGTCGGCAGCGTCGAGGTGGTGCTCCAGAGAAG | 59.7 | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202321_R | GTCTCGTGGGCTCGGCTGGAGCACCACCTTCTCTG | 60.0 | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202254_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202254_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202136_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202136_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202102_F | TCGTCGGCAGCGTCCAGAGAAGGTGGTGCTCCAG | 60.0 | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202102_R | GTCTCGTGGGCTCGGGAGCACCATCTTCCCTGGAG | 59.8 | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202068_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202068_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Slc39a8|Bank1_chr3_136027542_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Slc39a8|Bank1_chr3_136027542_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Mill1|Psg18_chr7_18268876_F | TCGTCGGCAGCGTCAGGGGCTTGGAAACATAAGCT | 59.6 | 0.24 |
| mm4_intergenic_Mill1|Psg18_chr7_18268876_R | GTCTCGTGGGCTCGGACTTGCCCCGAGAATGAACT | 59.3 | 0.24 |
| mm4_intergenic_Gm9923|Gm24984_chr10_72464410_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm9923|Gm24984_chr10_72464410_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Plac8|Coq2_chr5_100652232_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Plac8|Coq2_chr5_100652232_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Ppargc1a|mmu-mir-6417_chr5_52056468_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Ppargc1a|mmu-mir-6417_chr5_52056468_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm12643|Gm12644_chr4_91092178_F | TCGTCGGCAGCGTCGCAGAGCTTTCCCTCCCTG | 60.0 | 0.23 |
| mm4_intergenic_Gm12643|Gm12644_chr4_91092178_R | GTCTCGTGGGCTCGGGCAGGTTTGAGAGGGGTGTT | 60.1 | 0.23 |
| mm4_intron_Angpt4_chr2_151934711_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Angpt4_chr2_151934711_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm2_exon_D130017N08Rik_chr5_143764465_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm2_exon_D130017N08Rik_chr5_143764465_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Galntl6|Gm15881_chr8_58670833_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Galntl6|Gm15881_chr8_58670833_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Lcmt1_chr7_123401351_F | TCGTCGGCAGCGTCCAGCCTTCCCTGGAGTCTTG | 60.0 | 0.21 |
| mm4_intron_Lcmt1_chr7_123401351_R | GTCTCGTGGGCTCGGGCTGTCAGTCACTCAGGGAC | 60.0 | 0.21 |
| mm4_intergenic_Rpl36-ps3|Mycn_chr12_12916996_F | TCGTCGGCAGCGTCGATGCTGTGGTGTGTGATGC | 59.8 | 0.20 |
| mm4_intergenic_Rpl36-ps3|Mycn_chr12_12916996_R | GTCTCGTGGGCTCGGGGTCCCACGTTGACAGTCTT | 59.8 | 0.20 |
| mm4_intergenic_Gm5294|Pdgfa_chr5_138864351_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm5294|Pdgfa_chr5_138864351_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Cers6_chr2_69098834_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Cers6_chr2_69098834_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Edar_chr10_58619866_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Edar_chr10_58619866_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Mrps11_chr7_78790390_F | TCGTCGGCAGCGTCAAACACCAAGCGATGTCACA | 58.3 | 0.19 |
| mm4_intron_Mrps11_chr7_78790390_R | GTCTCGTGGGCTCGGTGCCATAATCCAAGGGCAGG | 60.1 | 0.19 |
| mm4_intergenic_Cldn18|Gm16004_chr9_99703958_F | TCGTCGGCAGCGTCAGGAGCTTTGTGGACATGGG | 59.9 | 0.19 |
| mm4_intergenic_Cldn18|Gm16004_chr9_99703958_R | GTCTCGTGGGCTCGGGGACAAGCATTCCAATGTCTGT | 59.1 | 0.19 |
| mm4_intergenic_Gm23476|Gm26159_chr16_8250109_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm23476|Gm26159_chr16_8250109_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Lin7a_chr10_107377422_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Lin7a_chr10_107377422_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm2_intron_Ptchd2_chr4_148286076_F | TCGTCGGCAGCGTCGGGTGGATGGAAACTGCAGA | 59.9 | 0.18 |
| mm2_intron_Ptchd2_chr4_148286076_R | GTCTCGTGGGCTCGGTTGCTGGAGTCTGTGCTCTG | 59.9 | 0.18 |
| mm4_exon_Kmt2b_chr7_30573312_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Kmt2b_chr7_30573312_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Fut8|Gm24070_chr12_77603543_F | TCGTCGGCAGCGTCGCTGAGATCCAGGTCCAAGG | 59.8 | 0.17 |
| mm4_intergenic_Fut8|Gm24070_chr12_77603543_R | GTCTCGTGGGCTCGGCTCCCGTTCATCACATGCCT | 60.1 | 0.17 |
| mm3_intergenic_Gm25011|Gm23680_chr10_12154646_F | TCGTCGGCAGCGTCCTGGTTGCTTTTGCCCACTC | 59.9 | 0.17 |
| mm3_intergenic_Gm25011|Gm23680_chr10_12154646_R | GTCTCGTGGGCTCGGACATCTCAGCTGCCATCAGT | 59.0 | 0.17 |
| mm4_intron_Mpped1_chr15_83837052_F | TCGTCGGCAGCGTCCATCTGGGACCATCAGACGG | 59.8 | 0.17 |
| mm4_intron_Mpped1_chr15_83837052_R | GTCTCGTGGGCTCGGCCAGCAGGGTGAGTTCAGAG | 60.0 | 0.17 |
| mm4_intergenic_Rpp25|Cox5a_chr9_57506098_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Rpp25|Cox5a_chr9_57506098_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Sec14l5_chr16_5153835_F | TCGTCGGCAGCGTCAAGCAGCTGGGGCCTTATTT | 59.9 | 0.17 |
| mm4_intron_Sec14l5_chr16_5153835_R | GTCTCGTGGGCTCGGCCCCAAATCAGAGCTCGTCA | 59.7 | 0.17 |
| mm4_intron_Dbt_chr3_116539849_F | TCGTCGGCAGCGTCGTTTCACTCATCCCAGGCCA | 59.9 | 0.16 |
| mm4_intron_Dbt_chr3_116539849_R | GTCTCGTGGGCTCGGTCAAAGAGGGTGCGTTTGGA | 59.8 | 0.16 |
| mm4_intergenic_Gm15298|Gm6368_chrX_141910671_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm15298|Gm6368_chrX_141910671_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm22331|Gm24937_chr1_113608297_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm22331|Gm24937_chr1_113608297_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Aldh1a2_chr9_71280969_F | TCGTCGGCAGCGTCAGTGAGTGGGAGTAGGCCAT | 59.9 | 0.15 |
| mm4_intron_Aldh1a2_chr9_71280969_R | GTCTCGTGGGCTCGGGGAAACAGGGATGTGCCACT | 60.2 | 0.15 |
| mm3_intergenic_Gm23776|Anapc15-ps_chr10_95655041_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Gm23776|Anapc15-ps_chr10_95655041_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Slc39a11|Gm26052_chr11_113330467_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Slc39a11|Gm26052_chr11_113330467_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Szt2_chr4_118383749_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Szt2_chr4_118383749_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Ush2a_chr1_188574541_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Ush2a_chr1_188574541_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_4933424L21Rik|4933426K07Rik_chr11_57651675_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_4933424L21Rik|4933426K07Rik_chr11_57651675_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Col8a1_chr16_57661186_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Col8a1_chr16_57661186_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Abcc12_chr8_86513936_F | TCGTCGGCAGCGTCTCTTTTGGAGCAATGGGCCT | 59.8 | 0.14 |
| mm4_intron_Abcc12_chr8_86513936_R | GTCTCGTGGGCTCGGCATTTGGGTGCATTCTGCCC | 60.1 | 0.14 |
| mm4_intron_Gm6994_chr14_77480786_F | TCGTCGGCAGCGTCAATTGTATCCCGGCACTCCC | 59.8 | 0.14 |
| mm4_intron_Gm6994_chr14_77480786_R | GTCTCGTGGGCTCGGGTTGACCACAGAGACCCAGG | 59.9 | 0.14 |
| mm4_intron_Poc1a_chr9_106304764_F | TCGTCGGCAGCGTCGCCTTGTTCATTCGAGCCAC | 59.8 | 0.14 |
| mm4_intron_Poc1a_chr9_106304764_R | GTCTCGTGGGCTCGGTAAGCCTAACACTGCCCTGC | 60.0 | 0.14 |
| mm4_intron_Ramp1_chr1_91193182_F | TCGTCGGCAGCGTCCAGCACACACCGGGTTCTAA | 60.2 | 0.13 |
| mm4_intron_Ramp1_chr1_91193182_R | GTCTCGTGGGCTCGGCTGGCTAGGCAATGGAGAGG | 59.8 | 0.13 |
| mm4_intron_Snx29_chr16_11367961_F | TCGTCGGCAGCGTCTGTGCTGTGCCCAGAAATCT | 59.8 | 0.12 |
| mm4_intron_Snx29_chr16_11367961_R | GTCTCGTGGGCTCGGCCATGGCTGTTGACCACCAA | 60.8 | 0.12 |
| mm4_intergenic_Rbfox1|Gm23476_chr16_7496459_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Rbfox1|Gm23476_chr16_7496459_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Ptpn5|Mrgpra6_chr7_47163132_F | TCGTCGGCAGCGTCGGGACTCCAGAATTCCACCC | 59.7 | 0.12 |
| mm4_intergenic_Ptpn5|Mrgpra6_chr7_47163132_R | GTCTCGTGGGCTCGGCTTCACCAGATCCCCAGCTG | 60.1 | 0.12 |
| mm4_intron_Gpr123_chr7_139872914_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Gpr123_chr7_139872914_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm1_intergenic_Efnb1|Gm14812_chrX_99202304_F | TCGTCGGCAGCGTCGAGGTGGTGCTCCAGAGAAG | 59.7 | 0.12 |
| mm1_intergenic_Efnb1|Gm14812_chrX_99202304_R | GTCTCGTGGGCTCGGCTGGAGCACCACCTTCTCTG | 60.0 | 0.12 |
| mm4_intergenic_Tmem178b|Agk_chr6_40284004_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Tmem178b|Agk_chr6_40284004_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Nbeal2_chr9_110637251_F | TCGTCGGCAGCGTCCTTCTGGCCAAACCCTCTCC | 60.3 | 0.11 |
| mm4_intron_Nbeal2_chr9_110637251_R | GTCTCGTGGGCTCGGGCCTCTACCCCATTGTCCTG | 59.8 | 0.11 |
| mm4_intron_Bmpr1b_chr3_141926775_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Bmpr1b_chr3_141926775_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Spata17|Gm15508_chr1_187056417_F | TCGTCGGCAGCGTCCCAAGCTCACTCCTACATGGT | 59.4 | 0.11 |
| mm4_intergenic_Spata17|Gm15508_chr1_187056417_R | GTCTCGTGGGCTCGGCAGGGTCACTGTGAACACCA | 59.8 | 0.11 |
| mm4_intron_Bcl7b_chr5_135169633_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Bcl7b_chr5_135169633_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gjb6|Cryl1_chr14_57133875_F | TCGTCGGCAGCGTCGAACAGGCTTGTGGACCCAG | 60.8 | 0.11 |
| mm4_intergenic_Gjb6|Cryl1_chr14_57133875_R | GTCTCGTGGGCTCGGTAAAGAACCTCCAGGCTGCT | 58.6 | 0.11 |
| mm4_intergenic_Arhgap26|Gm15335_chr18_38716711_F | TCGTCGGCAGCGTCTCCTGTCCCAGAGAAAAGGC | 59.3 | 0.11 |
| mm4_intergenic_Arhgap26|Gm15335_chr18_38716711_R | GTCTCGTGGGCTCGGTGCCGAACAAAGGAAGGACA | 59.8 | 0.11 |
| mm4_intergenic_Gm25509|n-R5-8s1_chr18_72911590_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm25509|n-R5-8s1_chr18_72911590_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Fggy_chr4_95680150_F | TCGTCGGCAGCGTCGCACAGCAGAACACGTCAAC | 60.3 | 0.10 |
| mm4_intron_Fggy_chr4_95680150_R | GTCTCGTGGGCTCGGCTAGATACCCACCGCCATGG | 59.6 | 0.10 |
| mm4_intron_Erg_chr16_95503537_F | TCGTCGGCAGCGTCGGACCACCATGACCACACAT | 59.9 | 0.10 |
| mm4_intron_Erg_chr16_95503537_R | GTCTCGTGGGCTCGGACCTGAACAGTGTCCACCAC | 59.8 | 0.10 |
| mm4_intergenic_Gm9991|Col6a3_chr1_90754597_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm9991|Col6a3_chr1_90754597_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Ncor2_chr5_125170979_F | TCGTCGGCAGCGTCCTGAAAGCATCGGGGCAGAA | 60.6 | 0.10 |
| mm4_intron_Ncor2_chr5_125170979_R | GTCTCGTGGGCTCGGGCACCTGTCTGCCTCTGG | 60.0 | 0.10 |
| mm4_intergenic_Mfn2|Plod1_chr4_147906412_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Mfn2|Plod1_chr4_147906412_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm7790|Gm14977_chrX_131217833_F | TCGTCGGCAGCGTCTGGGTGCACAGGACTGTTTT | 60.0 | 0.09 |
| mm4_intergenic_Gm7790|Gm14977_chrX_131217833_R | GTCTCGTGGGCTCGGTGTGAGCATTGTGGTGGGAA | 59.8 | 0.09 |
| mm4_intergenic_Gm11461|Gm11462_chr2_165927920_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm11461|Gm11462_chr2_165927920_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Spag1_chr15_36187337_F | TCGTCGGCAGCGTCTGCAAGCACTTAGAGACCCC | 59.6 | 0.09 |
| mm3_intron_Spag1_chr15_36187337_R | GTCTCGTGGGCTCGGCTCCAACAGACCCCGTCTTC | 60.0 | 0.09 |
| mm4_intergenic_Gm16065|Tbx5_chr5_119791261_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm16065|Tbx5_chr5_119791261_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Tyw3|Cryz/Tyw3_chr3_154594827_F | TCGTCGGCAGCGTCGCGTGCTTTTGGTTTGCTTC | 59.4 | 0.09 |
| mm4_intergenic_Tyw3|Cryz/Tyw3_chr3_154594827_R | GTCTCGTGGGCTCGGTTCTTCCAGCAAACACATGC | 57.2 | 0.09 |
| mm4_intergenic_Rbfox3|Enpp7_chr11_118927845_F | TCGTCGGCAGCGTCCAAGAAGACCCAGCATCCGT | 60.0 | 0.09 |
| mm4_intergenic_Rbfox3|Enpp7_chr11_118927845_R | GTCTCGTGGGCTCGGCTGGAGAACCTGGTGTGCTT | 59.8 | 0.09 |
| mm4_intron_Tenm2_chr11_36061228_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Tenm2_chr11_36061228_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Meis2_chr2_115961693_F | TCGTCGGCAGCGTCAGGCATCTAACTACCTCTGAACA | 58.6 | 0.08 |
| mm4_intron_Meis2_chr2_115961693_R | GTCTCGTGGGCTCGGTGTGATCTGCCGGCATGTAA | 59.7 | 0.08 |
| mm4_intron_Prrg2_chr7_45055162_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Prrg2_chr7_45055162_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm4868|Gm23151_chr5_126127545_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm4868|Gm23151_chr5_126127545_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_4930452L02Rik|Tekt3_chr11_63040696_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_4930452L02Rik|Tekt3_chr11_63040696_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Tex29|A230072I06Rik_chr8_12230677_F | TCGTCGGCAGCGTCATCCAGTCACTCCAGGCAGA | 60.2 | 0.08 |
| mm3_intergenic_Tex29|A230072I06Rik_chr8_12230677_R | GTCTCGTGGGCTCGGGCTGGTCCATCCCTCAAACA | 59.9 | 0.08 |
| mm4_intergenic_Gm15985|Gm6116_chr5_74792267_F | TCGTCGGCAGCGTCGAAGCAACTCCCTGGAGCAT | 60.0 | 0.08 |
| mm4_intergenic_Gm15985|Gm6116_chr5_74792267_R | GTCTCGTGGGCTCGGCAGCGCAGTAGCTTTCTCCT | 60.1 | 0.08 |
| mm4_intergenic_Plk2|Actbl2_chr13_110482595_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Plk2|Actbl2_chr13_110482595_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Ctnnbl1_chr2_157788646_F | TCGTCGGCAGCGTCGGGAGGAGAGGGTGGCTATT | 60.4 | 0.07 |
| mm4_intron_Ctnnbl1_chr2_157788646_R | GTCTCGTGGGCTCGGTCTGTCCTCCGGTCTTATGGA | 59.7 | 0.07 |
| mm3_intergenic_Nav1|Nav1/Gm4793_chr1_135538874_F | TCGTCGGCAGCGTCTGGAAGGGCCATGCTGTATG | 60.1 | 0.07 |
| mm3_intergenic_Nav1|Nav1/Gm4793_chr1_135538874_R | GTCTCGTGGGCTCGGGAGAAGCTAGGGGACAGGGA | 60.0 | 0.07 |
| mm4_intergenic_Gm24635|Arrdc3_chr13_80251305_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm24635|Arrdc3_chr13_80251305_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Irf2_chr8_46828042_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Irf2_chr8_46828042_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Vrk1|Gm24986_chr12_106136789_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Vrk1|Gm24986_chr12_106136789_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Actrt2|Gm13113_chr4_154675560_F | TCGTCGGCAGCGTCAGATTGCTGCCTAACCACCC | 60.0 | 0.07 |
| mm4_intergenic_Actrt2|Gm13113_chr4_154675560_R | GTCTCGTGGGCTCGGATTGCTCGATTCTGCGCCTA | 59.8 | 0.07 |
| mm4_intergenic_Aggf1|Crhbp_chr13_95426693_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Aggf1|Crhbp_chr13_95426693_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Scarf1|Slc43a2_chr11_75529704_F | TCGTCGGCAGCGTCTAGAGAGTGGCCAGGGAAGG | 60.3 | 0.07 |
| mm4_intergenic_Scarf1|Slc43a2_chr11_75529704_R | GTCTCGTGGGCTCGGCCCATTTCCCACTGGATGCT | 60.0 | 0.07 |
| mm4_exon_Hsh2d_chr8_72193432_F | TCGTCGGCAGCGTCACACTCACCTCTCCCTCCTC | 59.9 | 0.07 |
| mm4_exon_Hsh2d_chr8_72193432_R | GTCTCGTGGGCTCGGGTGTGCACAAACCAGTCCAG | 59.6 | 0.07 |
| mm4_intergenic_Gm13550|Ccdc148_chr2_59152641_F | TCGTCGGCAGCGTCCCATAGGGGTGGAGTCAGGA | 60.0 | 0.07 |
| mm4_intergenic_Gm13550|Ccdc148_chr2_59152641_R | GTCTCGTGGGCTCGGGAGCAGCCCTCTAGCATGAG | 59.9 | 0.07 |
| mm4_exon_Mrpl37_chr4_107064858_F | TCGTCGGCAGCGTCGAGAGAGAGGAGAGGGGAGG | 59.5 | 0.07 |
| mm4_exon_Mrpl37_chr4_107064858_R | GTCTCGTGGGCTCGGACCACCTGGAAGTTTCGGTT | 59.4 | 0.07 |
| mm4_intron_Ldlrad4_chr18_68136446_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Ldlrad4_chr18_68136446_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Pkd1l3_chr8_109635518_F | TCGTCGGCAGCGTCGGAAGCAAATCAGCCTGGGA | 60.3 | 0.06 |
| mm4_intron_Pkd1l3_chr8_109635518_R | GTCTCGTGGGCTCGGGTGAGGATGGCAAGGGGTC | 60.0 | 0.06 |
| mm4_intergenic_Hpgd|Gm24375_chr8_56417677_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Hpgd|Gm24375_chr8_56417677_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Mir673_chr12_109572027_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Mir673_chr12_109572027_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202371_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202371_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202287_F | TCGTCGGCAGCGTCCAGAGAAGGTGGTGCTCCAG | 60.0 | 0.06 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202287_R | GTCTCGTGGGCTCGGCACCTTCTCTGGAGCACCAC | 60.3 | 0.06 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202220_F | TCGTCGGCAGCGTCCTCCAGGGAAGATGGTGCTC | 59.8 | 0.06 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202220_R | GTCTCGTGGGCTCGGCTGGAGCACCACCTTCTCTG | 60.0 | 0.06 |
| mm4_intergenic_3100002H09Rik|RP23-230F2.8_chr4_124654763_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_3100002H09Rik|RP23-230F2.8_chr4_124654763_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_intergenic_Gm9726/mmu-mir-8099-2|Gm26055_chr12_94271847_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_intergenic_Gm9726/mmu-mir-8099-2|Gm26055_chr12_94271847_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Aox1_chr1_58063990_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Aox1_chr1_58063990_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Fer_chr17_63952148_F | TCGTCGGCAGCGTCGATGCAGTGCAGGCAAGTTC | 60.1 | 0.06 |
| mm4_intron_Fer_chr17_63952148_R | GTCTCGTGGGCTCGGGAAGGGCAAAGCAGCACATG | 60.3 | 0.06 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202237_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202237_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Catsperb_chr12_101418644_F | TCGTCGGCAGCGTCGTGGAAGCACCCAGGAAACT | 60.1 | 0.06 |
| mm4_intron_Catsperb_chr12_101418644_R | GTCTCGTGGGCTCGGCCCTACAGAACAAAATTTCCTCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm10113|Stmnd1_chr13_46235161_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm10113|Stmnd1_chr13_46235161_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Htr5a|Gm26608_chr5_28007863_F | TCGTCGGCAGCGTCCTCCAGTGTTGCCCTTGTCT | 59.8 | 0.06 |
| mm4_intergenic_Htr5a|Gm26608_chr5_28007863_R | GTCTCGTGGGCTCGGTCTAGTAGCCCAGGATGGTCC | 60.1 | 0.06 |
| mm4_exon_Snord88c_chr7_44249887_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Snord88c_chr7_44249887_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Polr1d|Gsx1_chr5_147156120_F | TCGTCGGCAGCGTCAGGTCTGGGTGATTCTGGGA | 59.8 | 0.05 |
| mm4_intergenic_Polr1d|Gsx1_chr5_147156120_R | GTCTCGTGGGCTCGGAGGAAATCTGTGCCAGGCAA | 59.8 | 0.05 |
| mm4_intergenic_Gm16378|Cdh15_chr8_122845389_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm16378|Cdh15_chr8_122845389_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_2310067B10Rik_chr11_115792862_F | TCGTCGGCAGCGTCGTGTGTAGCCTCACTGGGTC | 60.0 | 0.05 |
| mm4_exon_2310067B10Rik_chr11_115792862_R | GTCTCGTGGGCTCGGCTGTCTGAACCCGACAGAGG | 59.7 | 0.05 |
| mm4_intergenic_Gm23961|Gm25942_chr6_22776237_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm23961|Gm25942_chr6_22776237_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Itgb5_chr16_33852761_F | TCGTCGGCAGCGTCTCAGGTTGCAGAGTGCTTGA | 59.5 | 0.05 |
| mm3_intron_Itgb5_chr16_33852761_R | GTCTCGTGGGCTCGGTAGGATGACAGCTACGCACC | 59.2 | 0.05 |
| mm3_intergenic_Gm19932|Kcnip4_chr5_49440434_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm19932|Kcnip4_chr5_49440434_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm24326|Gm25923_chr12_27748450_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm24326|Gm25923_chr12_27748450_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gfod1|Sirt5_chr13_43365876_F | TCGTCGGCAGCGTCTGATCGTGGCAGCAGAGAAA | 59.6 | 0.05 |
| mm4_intergenic_Gfod1|Sirt5_chr13_43365876_R | GTCTCGTGGGCTCGGCCCAGAGTTGAAAAGTGCGC | 60.0 | 0.05 |
| mm3_intergenic_Nptx2|Gm6272_chr5_144594254_F | TCGTCGGCAGCGTCACCAGTGAGCCATCAACCAA | 59.5 | 0.05 |
| mm3_intergenic_Nptx2|Gm6272_chr5_144594254_R | GTCTCGTGGGCTCGGGAAATGCCATGCCCAGGTTC | 59.8 | 0.05 |
| mm4_exon_Cdh1_chr8_106649189_F | TCGTCGGCAGCGTCCGGGACTCCAGTCATAGGGA | 60.1 | 0.05 |
| mm4_exon_Cdh1_chr8_106649189_R | GTCTCGTGGGCTCGGAAGTACGTACGCGGTGGTG | 60.0 | 0.05 |
| mm4_intergenic_Gm13994|Slc24a5_chr2_124747276_F | TCGTCGGCAGCGTCACATTCTACCCAGCACTGCC | 60.0 | 0.05 |
| mm4_intergenic_Gm13994|Slc24a5_chr2_124747276_R | GTCTCGTGGGCTCGGCCAAGGTTACTGAGCTGAGCT | 59.7 | 0.05 |
| mm4_intergenic_n-R5s175|Gm2301_chr5_119429588_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_n-R5s175|Gm2301_chr5_119429588_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Slc28a3|Ntrk2_chr13_58805382_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Slc28a3|Ntrk2_chr13_58805382_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm14005|Gm14010_chr2_128410927_F | TCGTCGGCAGCGTCACCCTCTCTAGCCTCATCCG | 60.1 | 0.05 |
| mm4_intergenic_Gm14005|Gm14010_chr2_128410927_R | GTCTCGTGGGCTCGGAGCGACAACAGAGACAGGTC | 59.6 | 0.05 |
| mm4_intron_Klhl24_chr16_20104869_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Klhl24_chr16_20104869_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm12372|Rpl23a-ps6_chr4_37165149_F | TCGTCGGCAGCGTCGGTGGAGGCAAGGTCAACTT | 60.1 | 0.05 |
| mm4_intergenic_Gm12372|Rpl23a-ps6_chr4_37165149_R | GTCTCGTGGGCTCGGTCACTCAATGCAACATGGCTC | 59.1 | 0.05 |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202354_F | TCGTCGGCAGCGTCCAGAGAAGGTGGTGCTCCAG | 60.0 | 0.04 |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202354_R | GTCTCGTGGGCTCGGCCCTTTCTCTGGAGCACCAC | 60.3 | 0.04 |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202203_F | TCGTCGGCAGCGTCCTCCAGGGAAGATGGTGCTC | 59.8 | 0.04 |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202203_R | GTCTCGTGGGCTCGGCTGGAGCACCACCTTCTCTG | 60.0 | 0.04 |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202119_F | TCGTCGGCAGCGTCCAGAGAAGGTGGTGCTCCAG | 60.0 | 0.04 |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202119_R | GTCTCGTGGGCTCGGGAGCACCATCTTCCCTGGAG | 59.8 | 0.04 |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202085_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202085_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gpc6|Dct_chr14_117987951_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gpc6|Dct_chr14_117987951_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Ptprc|Atp6v1g3_chr1_138236323_F | TCGTCGGCAGCGTCGGAGAGCACCAATAGCCAACT | 60.0 | 0.04 |
| mm4_intergenic_Ptprc|Atp6v1g3_chr1_138236323_R | GTCTCGTGGGCTCGGTGTTGTCAAATTGCACCGGTC | 59.9 | 0.04 |
| mm2_intergenic_Gm24720|Tshz1_chr18_83953529_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm2_intergenic_Gm24720|Tshz1_chr18_83953529_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_9530026F06Rik|Gm11588_chr1_61397924_F | TCGTCGGCAGCGTCGTTCCTCCCAGCTGCTTCTT | 59.9 | 0.04 |
| mm4_intergenic_9530026F06Rik|Gm11588_chr1_61397924_R | GTCTCGTGGGCTCGGAGTTTGATCTGAGCGGCTGT | 59.6 | 0.04 |
| mm4_exon_Fndc7_chr3_108869164_F | TCGTCGGCAGCGTCCTCTTTCCCGCCTGAGTCTC | 59.8 | 0.04 |
| mm4_exon_Fndc7_chr3_108869164_R | GTCTCGTGGGCTCGGAAGAAGGGGCTGTTCCAGTG | 59.8 | 0.04 |
| mm4_intron_Plcb3_chr19_6968386_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Plcb3_chr19_6968386_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Micall2_chr5_139721551_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Micall2_chr5_139721551_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_4930569F06Rik|Suds3_chr5_116901673_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_4930569F06Rik|Suds3_chr5_116901673_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Gm16011_chr16_45428547_F | TCGTCGGCAGCGTCCCATTGGTGTTCGGTTGCTG | 60.0 | 0.04 |
| mm4_exon_Gm16011_chr16_45428547_R | GTCTCGTGGGCTCGGAGACTTAGCCCCAGCAGAGA | 59.9 | 0.04 |
| mm4_exon_Ankrd35_chr3_96683659_F | TCGTCGGCAGCGTCAGCTGAAGAATTAGCCCCGG | 59.8 | 0.04 |
| mm4_exon_Ankrd35_chr3_96683659_R | GTCTCGTGGGCTCGGTGGTGTTTGGTTGCTGTCCT | 60.0 | 0.04 |
| mm4_intergenic_AC166813.1|2610316D01Rik_chr3_45238013_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_AC166813.1|2610316D01Rik_chr3_45238013_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm14062|Btbd3_chr2_138033554_F | TCGTCGGCAGCGTCTACATGTTCCCCTGTCTGCC | 59.3 | 0.03 |
| mm4_intergenic_Gm14062|Btbd3_chr2_138033554_R | GTCTCGTGGGCTCGGACAGCATCTTCCAGACGCAA | 59.9 | 0.03 |
| mm4_intergenic_1700031F10Rik|Eefsec_chr6_88229639_F | TCGTCGGCAGCGTCCAGAACCCCATCCCTGTGTC | 60.0 | 0.03 |
| mm4_intergenic_1700031F10Rik|Eefsec_chr6_88229639_R | GTCTCGTGGGCTCGGGGCCAAATCAGACGGAGACA | 60.0 | 0.03 |
| mm3_exon_Arhgap22/Gm15512_chr14_33369804_F | TCGTCGGCAGCGTCAAACATACGGGTCCCAGCAG | 60.0 | 0.03 |
| mm3_exon_Arhgap22/Gm15512_chr14_33369804_R | GTCTCGTGGGCTCGGATGAGAGGCGGATGCTCATG | 59.9 | 0.03 |
| mm4_intergenic_Gm10797|Zfp365_chr10_67807834_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm10797|Zfp365_chr10_67807834_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ccser1_chr6_62247688_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ccser1_chr6_62247688_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm7803|Gm14611_chrX_50363108_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm7803|Gm14611_chrX_50363108_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Micall1_chr15_79122286_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Micall1_chr15_79122286_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24297|Gm22911_chr10_38419900_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24297|Gm22911_chr10_38419900_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Marveld3|Tat_chr8_109990263_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Marveld3|Tat_chr8_109990263_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cyp2c68_chr19_39714197_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cyp2c68_chr19_39714197_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cyp2c67_chr19_39628345_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cyp2c67_chr19_39628345_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cnbd1|Gm12393_chr4_19254864_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cnbd1|Gm12393_chr4_19254864_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Gabrg3_chr7_57385296_F | TCGTCGGCAGCGTCGTATGTGCACCTTGGCTGGA | 60.3 | 0.03 |
| mm4_intron_Gabrg3_chr7_57385296_R | GTCTCGTGGGCTCGGAGCTGCCTGTTTCCCTCATC | 60.0 | 0.03 |
| mm3_intron_Hivep3_chr4_119987039_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Hivep3_chr4_119987039_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Rpsa-ps9|Gbgt1_chr2_28494995_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Rpsa-ps9|Gbgt1_chr2_28494995_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Cntnap2_chr6_46980747_F | TCGTCGGCAGCGTCCTGGAGAAGGTGGAATGCTGT | 59.9 | 0.02 |
| mm4_intron_Cntnap2_chr6_46980747_R | GTCTCGTGGGCTCGGAGTAGATTTTGCTGAATACAAAGCA | 57.5 | 0.02 |
| mm4_intergenic_B230110C06Rik|Oxsm_chr14_15694097_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_B230110C06Rik|Oxsm_chr14_15694097_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Tsen2|2510049J12Rik_chr6_115578409_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Tsen2|2510049J12Rik_chr6_115578409_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Plxnd1_chr6_115988070_F | TCGTCGGCAGCGTCCTTTGGGCTATGCAACAGGC | 59.8 | 0.02 |
| mm4_intron_Plxnd1_chr6_115988070_R | GTCTCGTGGGCTCGGGAACCTTTCAGCCACTCCCA | 59.8 | 0.02 |
| mm3_intron_Pkd1l2_chr8_117050210_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Pkd1l2_chr8_117050210_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Hip1r_chr5_123993542_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Hip1r_chr5_123993542_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Ly6i|Ly6a_chr15_74990213_F | TCGTCGGCAGCGTCCTCCGCAAGTTACCTGACAGT | 59.9 | 0.02 |
| mm4_intergenic_Ly6i|Ly6a_chr15_74990213_R | GTCTCGTGGGCTCGGTAGTGCTTGTGACTGGCCAG | 59.9 | 0.02 |
| mm4_intergenic_Ly6f|9030619P08Rik_chr15_75355049_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Ly6f|9030619P08Rik_chr15_75355049_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Ly6c2|Ly6g_chr15_75116165_F | TCGTCGGCAGCGTCCCCCAAGTTACCTGACAGTGT | 59.5 | 0.02 |
| mm4_intergenic_Ly6c2|Ly6g_chr15_75116165_R | GTCTCGTGGGCTCGGTAGTGCTTGTGACTGGCCAG | 59.9 | 0.02 |
| mm4_intergenic_Gm20654|Ly6h_chr15_75467369_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm20654|Ly6h_chr15_75467369_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_9030619P08Rik|Gm20654_chr15_75442488_F | TCGTCGGCAGCGTCATCAGTCTGAGGTTCCGCAG | 59.4 | 0.02 |
| mm4_intergenic_9030619P08Rik|Gm20654_chr15_75442488_R | GTCTCGTGGGCTCGGTAGTGCTTGTGACTGGCCAG | 59.9 | 0.02 |
| mm4_intergenic_Gm12161|Gm12162_chr11_45398372_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm12161|Gm12162_chr11_45398372_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Sdk2_chr11_113985554_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Sdk2_chr11_113985554_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Vac14_chr8_110688540_F | TCGTCGGCAGCGTCTCCAGGCTCAGTTCCCTCAT | 60.2 | 0.02 |
| mm4_intron_Vac14_chr8_110688540_R | GTCTCGTGGGCTCGGTGCTCCCTAACAGGTGAGGT | 60.1 | 0.02 |
| mm4_intergenic_Kcng2|Ctdp1_chr18_80383675_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Kcng2|Ctdp1_chr18_80383675_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Ephb2_chr4_136744937_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Ephb2_chr4_136744937_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_1700074P13Rik|Gm4744_chr6_40941022_F | TCGTCGGCAGCGTCTGATGGGCGTGACAAATGGA | 59.9 | 0.01 |
| mm4_intergenic_1700074P13Rik|Gm4744_chr6_40941022_R | GTCTCGTGGGCTCGGGCCCTGTGCTTTGCTTCATC | 60.1 | 0.01 |
| mm2_intron_Slc24a3_chr2_145628588_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intron_Slc24a3_chr2_145628588_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_4933413C19Rik|Glis3_chr19_28622827_F | TCGTCGGCAGCGTCACATGGCTCCCACCTCTCTC | 60.9 | 0.01 |
| mm3_intergenic_4933413C19Rik|Glis3_chr19_28622827_R | GTCTCGTGGGCTCGGGGTGCTCGAGAAGTTCCTGT | 59.6 | 0.01 |
| mm4_intergenic_A330050F15Rik|Gm22967_chr17_69561382_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_A330050F15Rik|Gm22967_chr17_69561382_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Calb2_chr8_110150725_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Calb2_chr8_110150725_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Lypd6b|Lypd6_chr2_50049052_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Lypd6b|Lypd6_chr2_50049052_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm11813|1700123O12Rik_chr4_10693499_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm11813|1700123O12Rik_chr4_10693499_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Slc16a9/Gm7097/Gm9877|Fam13c_chr10_70298000_F | TCGTCGGCAGCGTCGCAGGAGAGATGACCCCATG | 59.8 | 0.01 |
| mm4_intergenic_Slc16a9/Gm7097/Gm9877|Fam13c_chr10_70298000_R | GTCTCGTGGGCTCGGTTAGCAAGGCCTCCCAAAGC | 60.6 | 0.01 |
| mm4_intron_Sh3pxd2a_chr19_47441814_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sh3pxd2a_chr19_47441814_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_9230112D13Rik_chr14_34516818_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_9230112D13Rik_chr14_34516818_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Cntnap2|Cul1_chr6_47364241_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Cntnap2|Cul1_chr6_47364241_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Uaca|Gm10655_chr9_61080944_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Uaca|Gm10655_chr9_61080944_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Atp2b2_chr6_113755115_F | TCGTCGGCAGCGTCAGTGGCCCTTTATTCAGCCC | 60.0 | 0.00 |
| mm4_intron_Atp2b2_chr6_113755115_R | GTCTCGTGGGCTCGGGTGTGACTCCTTACCGCCTC | 60.1 | 0.00 |
| mm4_intron_Opcml_chr9_27951096_F | TCGTCGGCAGCGTCGTTTTCCCCAAATCCAAGGCT | 59.0 | 0.00 |
| mm4_intron_Opcml_chr9_27951096_R | GTCTCGTGGGCTCGGACTCCCAAGAAAGTGCACTT | 57.2 | 0.00 |
| mm4_intron_Tex101_chr7_24668409_F | TCGTCGGCAGCGTCCCTTTAACTTGCACGGTGGC | 60.0 | 0.00 |
| mm4_intron_Tex101_chr7_24668409_R | GTCTCGTGGGCTCGGGGGCTCTAGAGGTGAGGGAA | 60.0 | 0.00 |
| mm4_intron_Svep1_chr4_58095396_F | TCGTCGGCAGCGTCTGCCCCAGCTTGAGAAGAAG | 59.9 | 0.00 |
| mm4_intron_Svep1_chr4_58095396_R | GTCTCGTGGGCTCGGACCCCTGGCTAGGCTGTATA | 59.4 | 0.00 |
| mm4_intron_Gm10649_chr8_76755498_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm10649_chr8_76755498_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Epb4.1l3_chr17_69178852_F | TCGTCGGCAGCGTCAAGGGGATGAGGGTAAGGCA | 60.2 | 0.00 |
| mm4_intron_Epb4.1l3_chr17_69178852_R | GTCTCGTGGGCTCGGCGTGTGCTAGGCTTCAGGAT | 59.8 | 0.00 |
| mm4_intron_Dennd3_chr15_73527245_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dennd3_chr15_73527245_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cyp4f15_chr17_32690216_F | TCGTCGGCAGCGTCGACTCCACTACTGGCTCAGC | 59.8 | 0.00 |
| mm4_intron_Cyp4f15_chr17_32690216_R | GTCTCGTGGGCTCGGCCCCTTTCCCCACCAGATAC | 59.4 | 0.00 |
| mm4_intergenic_Tuba3b|Gm15704_chr6_145622330_F | TCGTCGGCAGCGTCAATGGGTGTGAATGTGGCCT | 59.8 | 0.00 |
| mm4_intergenic_Tuba3b|Gm15704_chr6_145622330_R | GTCTCGTGGGCTCGGACTCTGAGCCCCAATTCTGC | 60.0 | 0.00 |
| mm4_intergenic_Tcerg1l|Mapk1ip1_chr7_138647694_F | TCGTCGGCAGCGTCCCTCCAGGTTAGGGACACAAG | 59.7 | 0.00 |
| mm4_intergenic_Tcerg1l|Mapk1ip1_chr7_138647694_R | GTCTCGTGGGCTCGGAGATGTCCTGCCTGCTTGTC | 60.0 | 0.00 |
| mm4_intergenic_Scd3|Scd2_chr19_44293012_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Scd3|Scd2_chr19_44293012_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mir465|Gm14683_chrX_66879935_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mir465|Gm14683_chrX_66879935_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Lrpap1|Adra2c_chr5_35205381_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Lrpap1|Adra2c_chr5_35205381_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Hpse2|Gm22135_chr19_43040559_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Hpse2|Gm22135_chr19_43040559_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5763|Tmem164_chrX_142680295_F | TCGTCGGCAGCGTCTTACCGGCCCTTAGAGGAGC | 61.0 | 0.00 |
| mm4_intergenic_Gm5763|Tmem164_chrX_142680295_R | GTCTCGTGGGCTCGGGCTTCCTAACCCCACCTTGG | 60.3 | 0.00 |
| mm4_intergenic_Gm22934|A530021J07Rik_chr7_83032393_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22934|A530021J07Rik_chr7_83032393_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12753|Gm12751_chr4_34157979_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12753|Gm12751_chr4_34157979_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ergic1|Gm22420_chr17_26569135_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ergic1|Gm22420_chr17_26569135_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Bod1l|mmu-mir-6414_chr5_41846952_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Bod1l|mmu-mir-6414_chr5_41846952_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_1810046K07Rik|Gm7293_chr9_51462493_F | TCGTCGGCAGCGTCACCAAAACCTTTGTGTGACCTG | 59.5 | 0.00 |
| mm4_intergenic_1810046K07Rik|Gm7293_chr9_51462493_R | GTCTCGTGGGCTCGGTGTCCTCGCTCGTTTCTGAG | 59.7 | 0.00 |
| mm4_intergenic_1700011M02Rik|Gm14841_chrX_102936228_F | TCGTCGGCAGCGTCTCCTCACTCCCCAACTCTGT | 59.8 | 0.00 |
| mm4_intergenic_1700011M02Rik|Gm14841_chrX_102936228_R | GTCTCGTGGGCTCGGGCTGCCATCAGACCTCCTAG | 59.6 | 0.00 |
| mm4_exon_Wfikkn2_chr11_94236272_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Wfikkn2_chr11_94236272_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Krt18_chr15_102028599_F | TCGTCGGCAGCGTCACTGGAGAGCAAAATCCGGG | 60.0 | 0.00 |
| mm4_exon_Krt18_chr15_102028599_R | GTCTCGTGGGCTCGGGAGCCCTCAGGTCTTCGATG | 59.8 | 0.00 |
| mm4_exon_Gm9791_chr3_34004910_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gm9791_chr3_34004910_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Carhsp1_chr16_8660834_F | TCGTCGGCAGCGTCAGGAAATGCTTGAGAGGGGC | 60.0 | 0.00 |
| mm4_exon_Carhsp1_chr16_8660834_R | GTCTCGTGGGCTCGGCTAGGGACCTGCAAGAACCC | 59.7 | 0.00 |
| mm3_intergenic_Gal3st3|Catsper1_chr19_5334759_F | TCGTCGGCAGCGTCGCCAGTTGAGTGATGACGGT | 60.3 | 0.00 |
| mm3_intergenic_Gal3st3|Catsper1_chr19_5334759_R | GTCTCGTGGGCTCGGTAAGAGGGAGCTAGCTGGCA | 60.0 | 0.00 |
| mm3_exon_Dnaaf3_chr7_4530772_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_exon_Dnaaf3_chr7_4530772_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313958 |
AATTTGTCCGAAGCCGTGAGCAGCCCGCTGCCTGAACCGCCAGAGAAGATGGTGCCCCACGGTTGCCTGAGCCCGCGAGC CGGCCCTCCGACTTCCCGGGAGCGTGGCGGGGGAGGCCAGGAGGAGGAG |
| mm3_intergenic_D5Ertd579e|Bloc1s4_chr5_36731962 |
CACCCACTCTGGAAAGGACCTTCAGAGAAGATAGTGCCTCACGGTGCCTGGGAGCAGCCTCAGAGTTCAGGGTAGACTGG AAAGGCCAGGGCTCTACACAGAAG |
| mm3_exon_Rbm38/Gm20490_chr2_173022634 |
GGGATTGTCGCTGTCCTTGAAGGCACTCCGCACTTGAACTTTGGGGAAGGAGCTGCAGCCCTGGAGGCAGAGAAGACAGT GCCCCAAGGGTCCTAAATACCAGATACTCTTCTGGGAGGAAAGACCCAGAGATGGCC |
| mm3_intron_Col27a1_chr4_63279562 |
CTGACTGCATGGCCTCCTTTATTTAACATCAGAACTGAATTCAGCATCCCGGCTGCTCTGTTCCCAGAGGAGAAGGTGAC CCAAGGCAGGGATGGTTTCCTAGCTTAAGAGACCAAGCTCTTGCGGAT |
| mm4_intergenic_Gm12861|Gm24352_chr4_118975095 |
CTCCACATAGGGACCTGGGATGGGGGACCACAAGCAATGGTACAGAAAAAGAAGCAACAAGTGAGACAAGAAGAGAGGAT GGTGACCCATGGAGGTTCCTAGAGTTGAGACAAGGGTGACAAGGACAACAGGCACA |
| mm4_intron_Smurf1_chr5_144912437 |
ACAGAACCATCAGTGTCCATGAGATGTCAGACTGATAGGACTAAATTAGGCCATAAAGCAATAACCAGGAAAGACGATGC CCCAAGGGTACAGAGGTACCCCAGATCCATGAGGCTGGAAGAAGCA |
| mm4_intergenic_Gm25799|Slit3_chr11_34904882 |
AATACAGAACAGGCACTCAAGTCCCTGGGGCATCATTTTCTCTTTCACAAATGAAAGACAAATTATTTTCCTTTGCTTCA TTTGACAAAATCTGATATTCTTCACTCTTTCTCTTAATGAGGGGGATGCATAGCACACAC |
| mm3_intron_Kdm3a_chr6_71611147 |
TGGTGGCTCAAACAGTTTCTGAATTTAAAACAGTTATGAACTTTTGGATTAGGAAAGTTCAACTTGGAAGTAGGAACCAT GGTGTACCATCTTCTCTGCACTAAGAGCACTTAGGTTGAAAACTGAGTACGCCAAGGCC |
| mm3_exon_Igfn1_chr1_135968832 |
GCATTGCCAGACACTTGAGCCCAGTGGCCCTCTGAACCGGCCTCATGAGGAGATGGTGCCCCAGGGTGCCTGGCTTTGTC CCAATTCCCAGTTCCAACTGTAGAGGTCCTGGCACCAAGAAA |
| mm4_intron_Tmprss15_chr16_78968397 |
TGGGAGCATTGTAGACTATAAGAGAAAAGAAGCTTTTATTAGTTAAGTAGACATTTAAATCTATATACCAGATATGAAAT TCAGAAGAGTTGAAATCCACAGAAGAAAATGCCCCACGGTGTTCAAAATAGGGCTGTGCT |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202170 |
CAGAGAAGGTGGTGCTCCAGGGAAGATGGTGCTCCAGGGAAGATGGTGCTCCAGGGAGGTGGTGCTCCAGGGAAGGTGGT GCTCCAGAGAAGGTG |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202153 |
GTGGTGCTCCAGAGAAGGTGGTGCTCCAGGGAAGATGGTGCTCCAGGGAAGATGGTGCTCCAGGGAGGTGGTGCTCCAGG GAAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAG |
| mm2_intergenic_Fam170a|Hdhd1a_chr18_50350852 |
GCTCACAGCATAGAACTCCACCAGAGAAGGTGGTGCCCCTGGGTAGTTGGTCTTTTTACCAGAACTTCAAACACCCAAAG AAGATAAAATAAACTTGACATATCCCTTGGCACAGTGTGTT |
| mm4_intergenic_Glrx3|Gm25798_chr7_137985996 |
TGACTCAAACTGGCATTGATAACAGTATACTTGAATAAATGATGCTGTGTACAGGCCAAGGAAGATGGTACCACAAGGAG GAGACATGGGTGACAACTATTGATCACCTGAACTAACTGAAGAACTGACCGACCCC |
| mm4_intergenic_Tspan3|C230081A13Rik_chr9_56162070 |
CGGGACCTCTTTACCTGTCCTCAAACATCTCTTTTTCCTGTAGCCTCCCTGGTTCATCATCTTCCCTGGGCATTCACAGA AATACCCAAGCACCTCAGCATC |
| mm4_intergenic_Chst15|Oat_chr7_132429412 | TTCAGTCTTTGGCCCTCAGCTCCATCCACCTTGGGGCACCATTTCCTCAGCTGCCCAGAGGCTTGGCTCTCGTGTAG |
| mm3_intron_Chchd6_chr6_89439875 |
TTGTCACCATCCTTCCTGCCCCCTGGTACCTGCTGCCAAATCAGATGGTGCCCCAAGGGCAAGATCACTGCCTTAAGGTG GGGTGTGACAGGA |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202321 |
GAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAGAGAAGATGGTGCTCCAGAGAAGGTGGTGCTCCAGGGAGGTGGTGCTCC AGGGAAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAG |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202102 |
CAGAGAAGGTGGTGCTCCAGGGAAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAGGGAAGGTGGTGCTCCAGAGAAGGTGG TGCTCCAGGGAAGATGGTGCTC |
| mm4_intergenic_Mill1|Psg18_chr7_18268876 |
AGGGGCTTGGAAACATAAGCTACTTCTTCTGAGGATCTAAGCATGCCAATACATTGAAGAGAGTGAAAGCTCAAAACTCA GAGAAGATAGAGCCCAAAGGTCAACAGTAAAAAGTTCATTCTCGGGGCAAGT |
| mm4_intergenic_Gm12643|Gm12644_chr4_91092178 |
GCAGAGCTTTCCCTCCCTGGCACAGAATAAATGGGCAGGAATTCCACTTTTCCTTGGGGCACCTCCTTCTCCAGGCTCAG GCTCCTCTTCAGAAGTTCCTGTCCCAAGTACAAGACTCTGAACACCCCTCTCAAACCTGC |
| mm4_intron_Lcmt1_chr7_123401351 |
CAGCCTTCCCTGGAGTCTTGAGGCAGATTTCCTAATGAGTAGTGCTGAGCCAGGAACCCTTGTGGCACCTTGTTCTCTGA TGGCTTTGAGGGATAATGTGTGTTGTCCCTGAGTGACTGACAGC |
| mm4_intergenic_Rpl36-ps3|Mycn_chr12_12916996 |
GATGCTGTGGTGTGTGATGCTCTTGAAACCGGTGGCATGGGGCGCCCTTGAGAAGACGGTGCTCCATGGAACCAAAGACT GTCAACGTGGGACC |
| mm4_intron_Mrps11_chr7_78790390 |
AAACACCAAGCGATGTCACATCAGGGAAAATGCTGCCCCAGGGAAGGCTTCATTCAGGAGGAAGTGGTTCCTTCGGGTGA CGCTCCCCTGTTGGGTGACGCTCTCCTGCCCTTGGATTATGGCA |
| mm4_intergenic_Cldn18|Gm16004_chr9_99703958 |
AGGAGCTTTGTGGACATGGGCTCGGCTCCTTGAGGCACCTCCTTCTCTTGTATGATGACGTACAGACATTGGAATGCTTG TCC |
| mm2_intron_Ptchd2_chr4_148286076 |
GGGTGGATGGAAACTGCAGATGAGGAAGCAAACCAGAGTCGATGGTGCCCCAAGGGCCAGTGGTGCCAACATGGGTGTCA GAGCACAGACTCCAGCAA |
| mm4_intergenic_Fut8|Gm24070_chr12_77603543 |
GCTGAGATCCAGGTCCAAGGTGAGAAATGTAGCCAAGGGGGCTCAGGTGAGGCTGCTGAGAAGATGGTGCCTAAGGGAGA AGACAGGTGGGTGTTGCATGGAGAAAGGCATGTGATGAACGGGAG |
| mm3_intergenic_Gm25011|Gm23680_chr10_12154646 |
CTGGTTGCTTTTGCCCACTCCTCTTTCTCTCGACACAGCATAATTTCCCAGCATGCCTTGGAGCACCATGTCCTCTGGAA TACTTCTAAACTGATGGCAGCTGAGATGT |
| mm4_intron_Mpped1_chr15_83837052 |
CATCTGGGACCATCAGACGGTCCCATGGGGCACTTTCTTGTATGGGGACAGCAGCTGTTTAAAAAACAAATGCACAGGGA ACCCTTATTCTCTTGGAGACAGTGGCTGACTGGGCCATTGCTCTGAACTCACCCTGCTGG |
| mm4_intron_Sec14l5_chr16_5153835 |
AAGCAGCTGGGGCCTTATTTAAGTGAGATTAAATGAGTTCCCTGGGGCATCATTTGATCTGGTTGCTAACTGATGAAGGG AAACAATTCTGCCTTGGTGACGAGCTCTGATTTGGGG |
| mm4_intron_Dbt_chr3_116539849 |
GTTTCACTCATCCCAGGCCAGGCCCCAGAGGGGATGGTGCCACTTGGTCTTGTAAAGATGCAGCAGATTAGAATTAAAGT ACTGCTTTATGCCATATCGTCAGACTTGGGGGGAAAAAAGTCCAAACGCACCCTCTTTGA |
| mm4_intron_Aldh1a2_chr9_71280969 |
AGTGAGTGGGAGTAGGCCATCCCCAGAGAGTGTCAGCCCTGCTTAGGCAGACCCTGAGCGGTCTTCTGAAAGCACGCTCT GCCCCTGGGGCAGCATGTTCTCTCTTGAGCAGAGCCTCTAAGTGGCACATCCCTGTTTCC |
| mm4_intron_Abcc12_chr8_86513936 |
TCTTTTGGAGCAATGGGCCTCAACTTGGGTGATTTTGCCCCCACCCCTCTCCCTTGGGGCAAGATCTTCTTTGAACTGTG TGCTAGAAACTAAGGCCTGGTGGGCAGAATGCACCCAAATG |
| mm4_intron_Gm6994_chr14_77480786 |
AATTGTATCCCGGCACTCCCGATTTACAATACTCCCTTGGGCACCATCTTAGCTGAAGAGTCGGTGCTTCCTAGCCTGGG TCTCTGTGGTCAAC |
| mm4_intron_Poc1a_chr9_106304764 | GCCTTGTTCATTCGAGCCACTGGCTCCTCCTTGGGGCTCCCATTTCTCTGGGCTGCAGCAGGGCAGTGTTAGGCTTA |
| mm4_intron_Ramp1_chr1_91193182 |
CAGCACACACCGGGTTCTAATGCATGGCACCCAGAACCTTCCCTGAGGCACCCCCTTCTCTGCCCTAAAACTGACTCTTC CAGAACAGGAAGGAAGGCCAAGTCACTCTTGATCCTCTCCATTGCCTAGCCAG |
| mm4_intron_Snx29_chr16_11367961 |
TGTGCTGTGCCCAGAAATCTCTGGAGCTAAATCACTGCTGTCTGCAACTTAACTTAAATGAAGCCAATCTGAGCACATGA TCCTCAGAGCCATGTGTCACCAGCTCCTCTGGGTTTGGTGGTCAACAGCCATGG |
| mm4_intergenic_Ptpn5|Mrgpra6_chr7_47163132 |
GGGACTCCAGAATTCCACCCACTAAGGGGTTGTGTTTCTCAGTTTTAGAGACCTTCCATGGGCCGAGAGACCCTAGGGCA GCAACCTCTCTGGACCAGCTGGGGATCTGGTGAAG |
| mm1_intergenic_Efnb1|Gm14812_chrX_99202304 |
GAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAGAGAAGATGGTGCTCCAGAGAAGGTGGTGCTCCAGGGAGGTGGTGCTCC AGGGAAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAG |
| mm4_intron_Nbeal2_chr9_110637251 |
CTTCTGGCCAAACCCTCTCCATAGCTTGCCTCCTCCCCTGCCTGCCCAGAGGACAGGTTCCCAGGGGTGCCATCTTCCCT GGGTACCCCTGAGCACTTAGCAAATCTGATGCCCTGGAATCAGGACAATGGGGTAGAGGC |
| mm4_intergenic_Spata17|Gm15508_chr1_187056417 |
CCAAGCTCACTCCTACATGGTTATCTTTTCGTCCTAGAACCTGAATATCAGAGCAGATGGTGCCCATGGGGTTTAGATCT ACAGTTTAATATTTGGTGTTCACAGTGACCCTG |
| mm4_intergenic_Gjb6|Cryl1_chr14_57133875 |
GAACAGGCTTGTGGACCCAGCTAGTAGTGAGTCTCTCCTGTTGGTCATCCTGGTAGGAAGACAACTGGTTTGTTTTCATC CTTTCTAGACCCTTTGGGCACCCTCTCCTCTAGAGCAGCCTGGAGGTTCTTTA |
| mm4_intergenic_Arhgap26|Gm15335_chr18_38716711 |
TCCTGTCCCAGAGAAAAGGCCGAGAGAGGAGGGTGCCACATGGAACAGGAAAGCCAGGCCCATCGTGCGTCGTCCCCCCC CCCCCCCCCCCAGCCTCTGTCCTTCCTTTGTTCGGCA |
| mm4_intron_Fggy_chr4_95680150 |
GCACAGCAGAACACGTCAACAGTCCTGGATCAGATTCCAGAGGAAGTGGTGCCCAAAGGTGAGGCGCTCTACCAAGATTT GTACTTTGAGTACTTGCCATGGCGGTGGGTATCTAG |
| mm4_intron_Erg_chr16_95503537 |
GGACCACCATGACCACACATGACCTGTTGTGTATGACAGACAGCTCATTTCAAATCACCATGAGAGTATTACACTGACTC TCACAAGTCAAGAGAAAATGCTGCCACAGGGGTGGTGGACACTGTTCAGGT |
| mm4_intron_Ncor2_chr5_125170979 |
CTGAAAGCATCGGGGCAGAACTCCAGGGTCCCCCCAGCCACCAAGAGGTGACATCCCACCACCCCAGGGCACATTCTTCT CTGGGCTTTAAAACACCCCCCCCAGTCATTCTGTTAATTGCCAGAGGCAGACAGGTGC |
| mm4_intergenic_Gm7790|Gm14977_chrX_131217833 |
TGGGTGCACAGGACTGTTTTCATTCACCTGCCCCTATGAGTAAACTGGCATCATGATCTCTGGTGACCTTTCTCTTTCAT ACTCTTCTCACCCTGGAGTTCCATCTTCTATGGTCTCTTCCCACCACAATGCTCACA |
| mm3_intron_Spag1_chr15_36187337 |
TGCAAGCACTTAGAGACCCCTCCACTCCCTGGGGCACATGCTTCTCTGGTTTTCATTCTTTGTACTTGGTCCCTATTTAG TCTTGCAACTCTCCTTTTTACCTCATGAGTTTCATGAAGACGGGGTCTGTTGGAG |
| mm4_intergenic_Tyw3|Cryz/Tyw3_chr3_154594827 |
GCGTGCTTTTGGTTTGCTTCTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNAGCCTCTCTGGGCATGTGTTTGCTGGAAGAA |
| mm4_intergenic_Rbfox3|Enpp7_chr11_118927845 |
CAAGAAGACCCAGCATCCGTATCCCTGGAACACCATCTCCTCTGCTGTAAGTTGGCATTGACCTGGGTAAGCACACCAGG TTCTCCAG |
| mm4_intron_Meis2_chr2_115961693 |
AGGCATCTAACTACCTCTGAACAATTTCAATGCATTATCTCGCCTTTTCCCTGGGGCACAAACTTCACTCGTCCATACTT TTAATATATTTTGTCTGCATGAAGCAGATCGAGTTATTACATGCCGGCAGATCACA |
| mm3_intergenic_Tex29|A230072I06Rik_chr8_12230677 |
ATCCAGTCACTCCAGGCAGAATTCTCCCCAGAGGAGAAGGTGGCCCAAGGAGAACATCTCCCCAGGACAGGGCACGGGCT GCCAGTACCTTGCAAGAGGAATCAGGATTCTCACAGTGTTTGAGGGATGGACCAGC |
| mm4_intergenic_Gm15985|Gm6116_chr5_74792267 |
GAAGCAACTCCCTGGAGCATAGTCCCTGCGGTACCATCTCCTCTAGCTTCATGGCTACTTACAAGCTATCCTGACCCTAG AAAGGGATCTAAGGAGAAAGCTACTGCGCTG |
| mm4_intron_Ctnnbl1_chr2_157788646 |
GGGAGGAGAGGGTGGCTATTGGGAGGCTGCAGGGTCTTATTCTTTTCCTTTGGGCGGCTGACCAGTCCAGCGCCCCAGAG TAAATGGCACCCCAAGGGGTAATGGTAGCTAATCCATAAGACCGGAGGACAGA |
| mm3_intergenic_Nav1|Nav1/Gm4793_chr1_135538874 |
TGGAAGGGCCATGCTGTATGGCTCTTCTCAGAGTCTCTGGGGCACCTTCTTCTTGGGCCAGCTCCAATCCTGAGCCCAGC CATCTCTGTCTTCCTCCCTTGAGGTCCTGTCCCTGTCCCCTAGCTTCTC |
| mm4_intergenic_Actrt2|Gm13113_chr4_154675560 |
AGATTGCTGCCTAACCACCCCTGCCAAGAGGAGATGGAGCCCCCTGGCCCAATGTGCACGGTCTAGGAGGCCCTTAGGAA ATTGACAATAGTAGGCGCAGAATCGAGCAAT |
| mm4_intergenic_Scarf1|Slc43a2_chr11_75529704 |
TAGAGAGTGGCCAGGGAAGGCTTCCCAGAGGAGGTGCTGCCCAAGGGAGGGTCACTAGCGAGAGCAGCACAAAGCCAGAG CCACAGCAGTTCCCCAGAGGGGAGCATCCAGTGGGAAATGGG |
| mm4_exon_Hsh2d_chr8_72193432 |
ACACTCACCTCTCCCTCCTCCCCCTAGGTGACCACCTTCTCTGGATGCCATGGCAGAAGCCAGGAGGCTGCCCCCACCAC TACCTCCTCGGCTGGACTGGTTTGTGCACAC |
| mm4_intergenic_Gm13550|Ccdc148_chr2_59152641 |
CCATAGGGGTGGAGTCAGGAGAGCAGGTCTACAGAGGAAATGGTGGCCCAGGGAGAGACTAAGAGCCAGGTCTCATGCTA GAGGGCTGCTC |
| mm4_exon_Mrpl37_chr4_107064858 |
GAGAGAGAGGAGAGGGGAGGGGAGGGCTCAGGAAGAGATGTTTATGCCTGTCAGGGAGCACCAGAGAAAAGGCTGCCTCA AGGGACTCTGGTTTTGTTTTTGAGATATCTGAAAACCGAAACTTCCAGGTGGT |
| mm4_intron_Pkd1l3_chr8_109635518 |
GGAAGCAAATCAGCCTGGGACCAAATAAGAAGGTGGCCCATGGTAGCCCCTTCTTCAGGGTTTTAAAAATAATAAAGGAC TCAGGAATAATAGAAGCCACCCGTGGACCCCTTGCCATCCTCAC |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202287 |
CAGAGAAGGTGGTGCTCCAGGGAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAGAGAAGATGGTGCTCCAGAGAAGGTGGT GCTCCAGGGAGGTGGTGCTCCAGGGAAGGTGGTGCTCCAGAGAAGGTG |
| mm2_intergenic_Efnb1|Gm14812_chrX_99202220 |
CTCCAGGGAAGATGGTGCTCCAGGGAGGTGGTGCTCCAGGGAAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAGAGAATAT GGTGCTCCAGAGAAGGTGGTGCTCCAG |
| mm4_intron_Fer_chr17_63952148 |
GATGCAGTGCAGGCAAGTTCTTGATATGTTACCTGCACATTCCACTCCAACCTAACCTTTGGTCAGCATCTTCACTGGGA TGACATGGGTAAAACCCACCGAAAGATGAGTCTCCCCATGTGCTGCTTTGCCCTTC |
| mm4_intron_Catsperb_chr12_101418644 |
GTGGAAGCACCCAGGAAACTTCCTTTCTGCTCTTGGTTTATACGTTTTGGTTAACCCACTGAAGCTGGTGACCCAAGGCA AGCCCTCTGGAGGAAATTTTGTTCTGTAGGG |
| mm4_intergenic_Htr5a|Gm26608_chr5_28007863 |
CTCCAGTGTTGCCCTTGTCTTGAATCCAGAGTTTCTTAGCAGTTAACTCTACCTATGCCATTAGCAAATCCCATGGGGAA CCATCTTCTCCTAGGACCATCCTGGGCTACTAGA |
| mm4_intergenic_Polr1d|Gsx1_chr5_147156120 |
AGGTCTGGGTGATTCTGGGATTTGGGGGCTACCTGGACCAGCTTCTCAGAGATGTTGGTGGCCCAGGGACTCATGCCCTG ATGTGTTGCCTGGCACAGATTTCCT |
| mm4_exon_2310067B10Rik_chr11_115792862 |
GTGTGTAGCCTCACTGGGTCCATTCCCCACCACAGGCACAGAGCAGATGCTGTCCCATGGCAGTGCCGACGTGGTCGTGG AGGCCTGCACAGACTTCTGGGATGGCGCTGACATCTACCCTCTGTCGGGTTCAGACAG |
| mm3_intron_Itgb5_chr16_33852761 |
TCAGGTTGCAGAGTGCTTGATAAACAGAGAACATGCAGAGAATGTGCTGAATAAGCATGCAGAGATGCTTAATAAGCATC TTCAGAGAAGATTGTTCCCCATGGCACGCAGGTGCGTAGCTGTCATCCTA |
| mm4_intergenic_Gfod1|Sirt5_chr13_43365876 |
TGATCGTGGCAGCAGAGAAAGGGGGAAAGGTCAAAGCGCAGCCACGAGCCGGGAGGATGGTGCCCCAAAGTTTTTGAGAG GGGGGCAGGGTTGGGGGTAGCGCACTTTTCAACTCTGGG |
| mm3_intergenic_Nptx2|Gm6272_chr5_144594254 |
ACCAGTGAGCCATCAACCAAGGAACCTTGGGATAAAGTCAACGCCCCTGGTGGCACCATCTGCTCTGGGCATAAGTGGGA CAACACCTGAACCTGGGCATGGCATTTC |
| mm4_exon_Cdh1_chr8_106649189 |
CGGGACTCCAGTCATAGGGAGCTGTCTACCAAAGTGACGCTGAAGTCCATGGGGCACCACCATCACCGGCACCACCACCG CGTACGTACTT |
| mm4_intergenic_Gm13994|Slc24a5_chr2_124747276 |
ACATTCTACCCAGCACTGCCCAGAGCCACCACCCACAGCAGATCCTGCCCCATGGGGCACACAGTATACAGAGCTCAGCT CAGTAACCTTGG |
| mm4_intergenic_Gm14005|Gm14010_chr2_128410927 |
ACCCTCTCTAGCCTCATCCGCACAAATGGAGGCCCAGGTGGTACCATCTGCTCTGGGTTCTTGAAATATTGACCTGACCA GAGTGGCCTGGAGTTTCAAAAGTCGACCTGTCTCTGTTGTCGCT |
| mm4_intergenic_Gm12372|Rpl23a-ps6_chr4_37165149 |
GGTGGAGGCAAGGTCAACTTGAAAGACAATCCAGAGAAGAGGGAGCACAAAGGAAGAGACAATACATTATCACATTTCAG TCCACTTTACAGAGCCATGTTGCATTGAGTGA |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202354 | CAGAGAAGGTGGTGCTCCAGGGAGGTGGTGCTCCAGGGAAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAGAGAAAGGG |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202203 |
CTCCAGGGAAGATGGTGCTCCAGGGAGGTGGTGCTCCAGGGAAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAGAGAATAT GGTGCTCCAGAGAAGGTGGTGCTCCAG |
| mm3_intergenic_Efnb1|Gm14812_chrX_99202119 |
CAGAGAAGGTGGTGCTCCAGGGAAGGTGGTGCTCCAGAGAAGGTGGTGCTCCAGGGAAGGTGGTGCTCCAGAGAAGGTGG TGCTCCAGGGAAGATGGTGCTC |
| mm4_intergenic_Ptprc|Atp6v1g3_chr1_138236323 |
GGAGAGCACCAATAGCCAACTATGAATTAATCTGAAGCAATGAATCTGACCCTCTGTCTGTCAAGAGAAGAGGGTGTCAC AAGGGACCGGTGCAATTTGACAACA |
| mm4_intergenic_9530026F06Rik|Gm11588_chr1_61397924 |
GTTCCTCCCAGCTGCTTCTTCATAAACTCAACCTAAAGCCAAGAGCAGCTGCTGCCCCAGGGCTCCCCCAACTGCTCCTT GTGGTCCCCTCTCCAATCAGGGCCTCAGCCATGGACAGCCGCTCAGATCAAACT |
| mm4_exon_Fndc7_chr3_108869164 |
CTCTTTCCCGCCTGAGTCTCGGCCACAGCAGTGACAGAGAACATGGAGCCGCAGGGCAGGCCCCCCATCCTGCAGGTCTC CCCGGTGCTGCTGCACTGGAACAGCCCCTTCTT |
| mm4_exon_Gm16011_chr16_45428547 |
CCATTGGTGTTCGGTTGCTGTCCTGTGGCTTTCCTGGTGGTCTCTGAACTTGGGCCCTGGGGCAGCCCCTGCTCTGGTTG GGACTTTCTGTGTACTTCATGATGGATCTCTGCTGGGGCTAAGTCT |
| mm4_exon_Ankrd35_chr3_96683659 |
AGCTGAAGAATTAGCCCCGGCTGAGATCCATCATGAAGTACACAGAAAGTCCCAACCAGAGCAGGGGCTGCCCCAGGGCC CAAGTTCAGAAACCACCGGGAAAGCCACAGGACAGCAACCAAACACCA |
| mm4_intergenic_Gm14062|Btbd3_chr2_138033554 |
TACATGTTCCCCTGTCTGCCGCCAGGGGGCAGCATCTTCTTGGGCAAAGGGAGGCCAGTGAGGAAGAAATTGCGTCTGGA AGATGCTGT |
| mm4_intergenic_1700031F10Rik|Eefsec_chr6_88229639 |
CAGAACCCCATCCCTGTGTCTTCTCCTTTGGGGACCATCTACCCTGGCTCTGTGTTCTGAGGTGTCTCCGTCTGATTTGG CC |
| mm3_exon_Arhgap22/Gm15512_chr14_33369804 | AAACATACGGGTCCCAGCAGGGGTCAGAGGGGATGGTGCCCCAGGATCATGAGCATCCGCCTCTCAT |
| mm4_intron_Gabrg3_chr7_57385296 |
GTATGTGCACCTTGGCTGGAAAGGAAAGATGAAGAATCCTTGGAGATTGTGTGTCTTTGGGAATCTTCAGAAACCAGAGT GCTCCATCTTCTCTGGGAACATACATAATGATGAGGGAAACAGGCAGCT |
| mm4_intron_Cntnap2_chr6_46980747 |
CTGGAGAAGGTGGAATGCTGTAGAGAGTTCAGGTCACCAACCAAAACCCGAGGGCAACATCTTCTCTTGGAGCCCTCTAT TTTGAGGTTAGCTTATTTTAAAAATAATGCTTTGTATTCAGCAAAATCTACT |
| mm4_intron_Plxnd1_chr6_115988070 |
CTTTGGGCTATGCAACAGGCCTAGTCCCCTCCCTAAGGGATGCCCCTAGGAATTAAGATGCAGGACATGACAAACCACAG AAGATGGCAGCCCAGGGGAAGGGCAGAAGCCCCACATCTGGGAGTGGCTGAAAGGTTC |
| mm4_intergenic_Ly6i|Ly6a_chr15_74990213 |
CTCCGCAAGTTACCTGACAGTGTGTATCAGTCTGAGGTTCAGCAGCCATGGGGAAGCATCTTCGCAGGAGCCTTTTATGT GAATAATGTGTTGGTGCTTGGTGCTGGGTCCTGGCCAGTCACAAGCACTA |
| mm4_intergenic_Ly6c2|Ly6g_chr15_75116165 |
CCCCAAGTTACCTGACAGTGTGTATCAGTCTGAGGTTCAGCAGCCATGGGGAAGCATCTTCGCAGGAGCCTTTTATGTGA ATAATGTGCTGGTGCTTGGTGCTGGGTCCTGGCCAGTCACAAGCACTA |
| mm4_intergenic_9030619P08Rik|Gm20654_chr15_75442488 |
ATCAGTCTGAGGTTCCGCAGCCATGGGGAAGCATCTTCGCAGGAGCCTTTTATGTGAATAATGTGTTGGTGCTTGGTGCT GGGTCCTGGCCAGTCACAAGCACTA |
| mm4_intron_Vac14_chr8_110688540 |
TCCAGGCTCAGTTCCCTCATACCCTTAGGATCCTCCAAGCACTCCCCCAGTCTCTGCAGTCCCCTTTCCTGGGGACACCC TCCTCTCTGGCCTGTAAATCTTTGTAGTTATCACCTCACCTGTTAGGGAGCA |
| mm4_intergenic_1700074P13Rik|Gm4744_chr6_40941022 |
TGATGGGCGTGACAAATGGACGATGGCTATGGAGCTCCAGAGATTATGGTCTCCCAGGGATTATAGGTGTAATGACAGAA AACTGGCAGATGGAAGTTGAAAATGATATGCTTGCCTGATGAAGCAAAGCACAGGGC |
| mm3_intergenic_4933413C19Rik|Glis3_chr19_28622827 |
ACATGGCTCCCACCTCTCTCCAGAGAGACCTTTGGGAGCCATCTTCTCTGGCTCTTGGCCACCTGTTTATTCTAAGGTAC TGATGAAGAATATATATTGAATCAGTCTTGAACACATCACAGGAACTTCTCGAGCACC |
| mm4_intergenic_Slc16a9/Gm7097/Gm9877|Fam13c_chr10_70298000 |
GCAGGAGAGATGACCCCATGAAGCTGAGTCTGCTCTTTGCTTCAAGTTTTTACTGAGGCTTATGGCTGCCAGAGCAGAAG TTTCCCCATGGCCACGGTGGCTTTGGGAGGCCTTGCTAA |
| mm4_intron_Atp2b2_chr6_113755115 |
AGTGGCCCTTTATTCAGCCCGTGGGCCTCACAGAGACCCCTGTCCCACCATGTTCTCTGGACCCCGGCCCCTGCCCGCCT GCCCGCCCAGGAGCTGGCGTTGGTAGTGCCAGCGGAGGCGGTAAGGAGTCACAC |
| mm4_intron_Opcml_chr9_27951096 |
GTTTTCCCCAAATCCAAGGCTTTTATCTCCTGATCCTGTACAATATGCAGGAATAAATTCAGGTATTTTCTTTTCTCTCT TTTTTTTCCTTAGCAAACCATCTTCTCTGGGGCAAAGTTTAAGTGCACTTTCTTGGGAGT |
| mm4_intron_Tex101_chr7_24668409 |
CCTTTAACTTGCACGGTGGCGTCCATGCCTCCTAGGAGCCAGAAAAGATGGGGCAACAGGGGGGGCTTAGGGAACGGGGA GCCCCGTCTTCCCTCACCTCTAGAGCCC |
| mm4_intron_Svep1_chr4_58095396 |
TGCCCCAGCTTGAGAAGAAGATCCCAGTAGGTCTCTGGGACCTGCAACCTGCTCATTAGGCCAGTGCTATGGGTGGACCT GAGAAGAAAGGGCCCCATGGAACACTATACAGCCTAGCCAGGGGT |
| mm4_intron_Epb4.1l3_chr17_69178852 |
AAGGGGATGAGGGTAAGGCACACAGAGAAGATGGGGAGCCATGGTAGGGCCGTGGTCCATCAGTGAAGAGGATGGAAATC CTGAAGCCTAGCACACG |
| mm4_intron_Cyp4f15_chr17_32690216 |
GACTCCACTACTGGCTCAGCCTCATGGCTATCCACATTTGAGGCCATCCAGAGGTGGTGGGGCCCCAGGGAAAGTATCTG GTGGGGAAAGGGG |
| mm4_intergenic_Tuba3b|Gm15704_chr6_145622330 |
AATGGGTGTGAATGTGGCCTGGATATGAATACTAACGTGCTGGGAGCAGCAACAGCTCCAGAGAATATGGGGCTCTAGGG CCAGAAAACAGGAGTAGGCAGAATTGGGGCTCAGAGT |
| mm4_intergenic_Tcerg1l|Mapk1ip1_chr7_138647694 |
CCTCCAGGTTAGGGACACAAGAAGGAAGAGCTAAGGCTCTGTCCATGGTGACCCATCTTCTATGGTGGACAGTTAGCATG GGTATGGACAAGCAGGCAGGACATCT |
| mm4_intergenic_Gm5763|Tmem164_chrX_142680295 |
TTACCGGCCCTTAGAGGAGCCAGCCCAGCCACGAGGTAGAGAGCGTCAGAGAAGAGGGGGCCCCCTGGACCCAGCTAGCG CTCACTTTTCCTGGCTGTTCTTTCCAAGGTGGGGTTAGGAAGC |
| mm4_intergenic_1810046K07Rik|Gm7293_chr9_51462493 |
ACCAAAACCTTTGTGTGACCTGCCTTGGGGCCACATTTTATCTGGATGCCTTTGCTTGGTGCTTCTTCCTTATTAGACCA GCATTTTTCAGAGACTTATCTCCAATCTCAGAAACGAGCGAGGACA |
| mm4_intergenic_1700011M02Rik|Gm14841_chrX_102936228 |
TCCTCACTCCCCAACTCTGTAATGTAGGTCTCTTCTATAGGGCCATGAGGACGCATCTTCTCTGGCAAGTTTCTCCATTG CTTAAAGAAAAGATCTTTTCACATCCATGCTGTGTCTAGGAGGTCTGATGGCAGC |
| mm4_exon_Krt18_chr15_102028599 |
ACTGGAGAGCAAAATCCGGGAACATCTGGAGAAGAAGGGGCCCCAGGGCGTCAGAGACTGGGGCCACTACTTCAAGATCA TCGAAGACCTGAGGGCTC |
| mm4_exon_Carhsp1_chr16_8660834 |
AGGAAATGCTTGAGAGGGGCCACGCCCGCCTTGAGGCCCCATCTTGTATGGTAGAATGTTCTATCCAGGATGGCCCTGCT CCTCCTTCCCCCAAAGTCTCCCTCAAGCCCAGGAGAAGGGGTTCTTGCAGGTCCCTAG |
| mm3_intergenic_Gal3st3|Catsper1_chr19_5334759 |
GCCAGTTGAGTGATGACGGTCAGACCAGTTTCTTCTGTGGGTCTGAACCAGGGGGCCCCATCTTCTCTGTAGCAGCCAGC TGCACACGTCCATTCTCTGCCAGCTAGCTCCCTCTTA |