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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313871_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313871_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intergenic_Myh9|Gm22107_chr15_77824847_F | TCGTCGGCAGCGTCCCCAAGACCTTGTCTCGCTT | 59.9 | 0.63 |
| mm4_intergenic_Myh9|Gm22107_chr15_77824847_R | GTCTCGTGGGCTCGGCGTTACATTTCACCAGCACCA | 59.1 | 0.63 |
| mm3_intergenic_Gm23011|Gm26691_chr3_133690625_F | Primer3: not found at this Tm | N.d. | 0.51 |
| mm3_intergenic_Gm23011|Gm26691_chr3_133690625_R | Primer3: not found at this Tm | N.d. | 0.51 |
| mm4_intergenic_Cxxc4|Gm26820_chr3_134296743_F | Primer3: not found at this Tm | N.d. | 0.49 |
| mm4_intergenic_Cxxc4|Gm26820_chr3_134296743_R | Primer3: not found at this Tm | N.d. | 0.49 |
| mm4_intergenic_Gm831|Gm12962_chr4_131632431_F | Primer3: not found at this Tm | N.d. | 0.43 |
| mm4_intergenic_Gm831|Gm12962_chr4_131632431_R | Primer3: not found at this Tm | N.d. | 0.43 |
| mm4_intergenic_Gm14647|Gm25851_chrX_58295591_F | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intergenic_Gm14647|Gm25851_chrX_58295591_R | Primer3: not found at this Tm | N.d. | 0.38 |
| mm3_exon_Ttll9_chr2_153006976_F | TCGTCGGCAGCGTCCTTCAAGCGCAGAGGAAAGC | 59.8 | 0.36 |
| mm3_exon_Ttll9_chr2_153006976_R | GTCTCGTGGGCTCGGCCTGCCAGGGCCTCATTT | 59.6 | 0.36 |
| mm4_intron_Sept4_chr11_87585050_F | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intron_Sept4_chr11_87585050_R | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intron_Gm14616_chr2_174858740_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intron_Gm14616_chr2_174858740_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Msln|Narfl_chr17_25765968_F | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intergenic_Msln|Narfl_chr17_25765968_R | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intron_Nos1_chr5_117901780_F | TCGTCGGCAGCGTCGCATGCAAGGGGTTGTAAGC | 60.1 | 0.34 |
| mm4_intron_Nos1_chr5_117901780_R | GTCTCGTGGGCTCGGTTTTGTGGCCACCTAGGAGA | 58.5 | 0.34 |
| mm4_intron_Epb4.1l4b_chr4_57029969_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intron_Epb4.1l4b_chr4_57029969_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intron_Atp8b5_chr4_43271402_F | TCGTCGGCAGCGTCAAGCAGCCCTGGTATTGTCC | 60.0 | 0.31 |
| mm4_intron_Atp8b5_chr4_43271402_R | GTCTCGTGGGCTCGGGCAGATCCCAGGTTATACGGT | 59.3 | 0.31 |
| mm4_exon_Zfp292_chr4_34811035_F | TCGTCGGCAGCGTCTGGCCTTTCACATGAGCAAT | 58.0 | 0.30 |
| mm4_exon_Zfp292_chr4_34811035_R | GTCTCGTGGGCTCGGCGACAAGGACAAGTCTTATGAGC | 59.3 | 0.30 |
| mm4_intergenic_Ccdc13|Gm17163_chr9_121820102_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Ccdc13|Gm17163_chr9_121820102_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Gm23752|Gm24815_chr12_6005925_F | TCGTCGGCAGCGTCCCAGGAAAATCGTGTGCTGC | 60.1 | 0.29 |
| mm4_intergenic_Gm23752|Gm24815_chr12_6005925_R | GTCTCGTGGGCTCGGGGCACAGATGATCCCCACAA | 60.0 | 0.29 |
| mm4_intron_E130309F12Rik_chr4_49068024_F | TCGTCGGCAGCGTCGGGGACAAGCTTTGTGGCTA | 60.2 | 0.26 |
| mm4_intron_E130309F12Rik_chr4_49068024_R | GTCTCGTGGGCTCGGTCGTGTGTGCATGTGACTCT | 59.6 | 0.26 |
| mm4_intergenic_Ap3b1|Tbca_chr13_94654331_F | TCGTCGGCAGCGTCGCCACTGAGCATCTGTCAGT | 60.0 | 0.26 |
| mm4_intergenic_Ap3b1|Tbca_chr13_94654331_R | GTCTCGTGGGCTCGGCTCTCAGTGGGATAGCGCTG | 59.9 | 0.26 |
| mm3_intergenic_Cnpy1|Rbm33_chr5_28288660_F | TCGTCGGCAGCGTCTCCCTGTCCTTTAAAATGCCA | 57.4 | 0.24 |
| mm3_intergenic_Cnpy1|Rbm33_chr5_28288660_R | GTCTCGTGGGCTCGGTTGTCAGCTGAGCAGGAGTG | 59.9 | 0.24 |
| mm4_intergenic_Gm15323|Ankrd55_chr13_112271515_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm15323|Ankrd55_chr13_112271515_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_Pcdh20|Gm25886_chr14_89296491_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_Pcdh20|Gm25886_chr14_89296491_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Arid5b|1700040L02Rik_chr10_68372482_F | TCGTCGGCAGCGTCGACCACTTGTGAGGAACCCC | 60.2 | 0.23 |
| mm4_intergenic_Arid5b|1700040L02Rik_chr10_68372482_R | GTCTCGTGGGCTCGGCATACCGAGAAGTGTGCTGGT | 60.0 | 0.23 |
| mm3_intron_Tspan11_chr6_127911954_F | TCGTCGGCAGCGTCCCCCGGCTAAAACTGAAGGT | 59.9 | 0.23 |
| mm3_intron_Tspan11_chr6_127911954_R | GTCTCGTGGGCTCGGGGAACACAAAGCAAGGAGGC | 59.6 | 0.23 |
| mm3_intergenic_Gm26651|Diras2_chr13_52037477_F | TCGTCGGCAGCGTCTCTGCTGTGACAAGGACTCT | 58.2 | 0.23 |
| mm3_intergenic_Gm26651|Diras2_chr13_52037477_R | GTCTCGTGGGCTCGGGCGTGTGCAGAGGATACACT | 60.1 | 0.23 |
| mm4_intergenic_Gm25684|Gm9966_chr7_95946774_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm25684|Gm9966_chr7_95946774_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm14940|Gm17521_chrX_122776409_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm14940|Gm17521_chrX_122776409_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm3_intron_Obfc1_chr19_47532822_F | TCGTCGGCAGCGTCAGATCCATCTCAAGAAACAAGATCA | 58.0 | 0.22 |
| mm3_intron_Obfc1_chr19_47532822_R | GTCTCGTGGGCTCGGGCTTTGCAGGATACCTTCCCT | 60.0 | 0.22 |
| mm3_intergenic_1700092K14Rik|Gm11690_chr11_114218182_F | TCGTCGGCAGCGTCTCCACATCCCCGATCTAGCA | 60.1 | 0.21 |
| mm3_intergenic_1700092K14Rik|Gm11690_chr11_114218182_R | GTCTCGTGGGCTCGGCTCCTCTGATGAAAGCCCGG | 60.1 | 0.21 |
| mm4_intron_A730017C20Rik_chr18_59074874_F | TCGTCGGCAGCGTCGCTGTGGAAGGAACCCTGAA | 59.8 | 0.21 |
| mm4_intron_A730017C20Rik_chr18_59074874_R | GTCTCGTGGGCTCGGTCTCATCTCTGTGTCAGGGGT | 59.9 | 0.21 |
| mm2_intergenic_Gm5633|Gm22908_chr12_21835456_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm2_intergenic_Gm5633|Gm22908_chr12_21835456_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm2_intergenic_Gm3993|Gm10479_chr12_20368451_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm2_intergenic_Gm3993|Gm10479_chr12_20368451_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm2_intergenic_Gm10480|5730507C01Rik_chr12_18454945_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm2_intergenic_Gm10480|5730507C01Rik_chr12_18454945_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Tjp1_chr7_65333475_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Tjp1_chr7_65333475_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm26396|Gm13795_chr2_95064329_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm26396|Gm13795_chr2_95064329_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Mir1199|Palm3_chr8_84012898_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Mir1199|Palm3_chr8_84012898_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm5432|Lpin1_chr12_16362874_F | TCGTCGGCAGCGTCGCCCAGAAATCGCCCATCAT | 60.8 | 0.20 |
| mm4_intergenic_Gm5432|Lpin1_chr12_16362874_R | GTCTCGTGGGCTCGGGTGGAGAAGTTGAGACCCGG | 60.0 | 0.20 |
| mm4_intron_Abcd2_chr15_91158886_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Abcd2_chr15_91158886_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Cntln_chr4_85066653_F | TCGTCGGCAGCGTCGAACGCGATGCAGATTGACC | 59.9 | 0.20 |
| mm4_intron_Cntln_chr4_85066653_R | GTCTCGTGGGCTCGGTGCTACTTCGCTGCACTTCA | 59.9 | 0.20 |
| mm4_exon_Gm16938_chr7_98185042_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_exon_Gm16938_chr7_98185042_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Bcas3_chr11_85488593_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Bcas3_chr11_85488593_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_exon_Atp5b_chr10_128085621_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_exon_Atp5b_chr10_128085621_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm3_intergenic_Ankfn1|Pctp_chr11_89786729_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intergenic_Ankfn1|Pctp_chr11_89786729_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm13662/Gm13663/Gm17250|Gm13662_chr2_71755461_F | TCGTCGGCAGCGTCCAACGGTTCCATCCTAGTGCT | 60.0 | 0.18 |
| mm4_intergenic_Gm13662/Gm13663/Gm17250|Gm13662_chr2_71755461_R | GTCTCGTGGGCTCGGCAGGTTTCCTGCCAAGCATG | 59.7 | 0.18 |
| mm4_intergenic_Pitx1|H2afy_chr13_55965871_F | TCGTCGGCAGCGTCTCCCCACTCTGTGATCACCT | 59.8 | 0.18 |
| mm4_intergenic_Pitx1|H2afy_chr13_55965871_R | GTCTCGTGGGCTCGGCTCCCACAGAGCCAGCAG | 59.7 | 0.18 |
| mm4_intergenic_Gm11493|Akap1_chr11_88774231_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm11493|Akap1_chr11_88774231_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Auts2_chr5_132370419_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Auts2_chr5_132370419_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Lingo1|Odf3l1_chr9_56782482_F | TCGTCGGCAGCGTCCTGAAGGGCCTGCTCTACAC | 60.1 | 0.18 |
| mm4_intergenic_Lingo1|Odf3l1_chr9_56782482_R | GTCTCGTGGGCTCGGCACTGAGTGAGGGTGAGCTC | 59.7 | 0.18 |
| mm4_exon_Hipk2_chr6_38818347_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Hipk2_chr6_38818347_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_D19Bwg1357e_chr19_27408949_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_D19Bwg1357e_chr19_27408949_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm3_intron_Tcf7l2_chr19_55846167_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm3_intron_Tcf7l2_chr19_55846167_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Cdk1|Ank3_chr10_69517804_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Cdk1|Ank3_chr10_69517804_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Plec_chr15_76190787_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Plec_chr15_76190787_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Etl4|Gm13335_chr2_20408628_F | TCGTCGGCAGCGTCGAGGCATCCTGTTTCCTCCC | 60.1 | 0.17 |
| mm4_intergenic_Etl4|Gm13335_chr2_20408628_R | GTCTCGTGGGCTCGGAAAAGACAGCCCACCCTCTG | 59.8 | 0.17 |
| mm3_intron_Ssc5d_chr7_4941130_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm3_intron_Ssc5d_chr7_4941130_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_A830092H15Rik|Gm25773_chr3_26421027_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_A830092H15Rik|Gm25773_chr3_26421027_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Pla2r1_chr2_60498880_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Pla2r1_chr2_60498880_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm25460|Gm5263_chr1_145555486_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm25460|Gm5263_chr1_145555486_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Smad7_chr18_75386685_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Smad7_chr18_75386685_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Pgrmc2|Gm25487_chr3_41375132_F | TCGTCGGCAGCGTCTGGGATGGATGGAATCAAGCA | 59.4 | 0.14 |
| mm4_intergenic_Pgrmc2|Gm25487_chr3_41375132_R | GTCTCGTGGGCTCGGTGGCTGAGTTCTCCAGCAAG | 59.9 | 0.14 |
| mm4_intergenic_Abca12|Atic_chr1_71473034_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Abca12|Atic_chr1_71473034_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm24792|Epha5_chr5_83771875_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm24792|Epha5_chr5_83771875_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Chrm3|Gm26861_chr13_9880557_F | TCGTCGGCAGCGTCTCCCAAGGCTTCTTGTCTGTC | 59.9 | 0.13 |
| mm4_intergenic_Chrm3|Gm26861_chr13_9880557_R | GTCTCGTGGGCTCGGCCAGGTGACAAATGCCTGTC | 59.1 | 0.13 |
| mm4_intergenic_Gm23104|Hsp25-ps1/Gm9817_chr13_45072887_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm23104|Hsp25-ps1/Gm9817_chr13_45072887_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Tmem59l|Crlf1_chr8_70489843_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Tmem59l|Crlf1_chr8_70489843_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intergenic_Gm14920|Gm14918_chrX_117238941_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intergenic_Gm14920|Gm14918_chrX_117238941_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_exon_Bai2_chr4_130013732_F | TCGTCGGCAGCGTCTGCTGAACTCTGCTGTTGGG | 60.5 | 0.12 |
| mm4_exon_Bai2_chr4_130013732_R | GTCTCGTGGGCTCGGGGCGACACCTCCGTATCATT | 59.8 | 0.12 |
| mm4_exon_Jakmip1_chr5_37085451_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Jakmip1_chr5_37085451_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Kdm2b_chr5_122881263_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Kdm2b_chr5_122881263_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Adc|Ak2_chr4_128967344_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Adc|Ak2_chr4_128967344_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_4930401O12Rik|Gm11376_chr13_31284016_F | TCGTCGGCAGCGTCCAGCAGGTCATGAGGGGAAG | 60.1 | 0.11 |
| mm4_intergenic_4930401O12Rik|Gm11376_chr13_31284016_R | GTCTCGTGGGCTCGGAGGGCCATTAACAGTGCCTG | 60.3 | 0.11 |
| mm4_intergenic_Zfp280d/BC065403|RP24-282D16.2_chr9_72368414_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Zfp280d/BC065403|RP24-282D16.2_chr9_72368414_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm2_intergenic_Gm16102|Gulp1_chr1_44650724_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm2_intergenic_Gm16102|Gulp1_chr1_44650724_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_M5C1000I18Rik/C2cd4b|C2cd4a_chr9_67815651_F | TCGTCGGCAGCGTCACTTGTCTGTGCCAGAAACA | 57.5 | 0.10 |
| mm4_intergenic_M5C1000I18Rik/C2cd4b|C2cd4a_chr9_67815651_R | GTCTCGTGGGCTCGGAGAAAATAGGTTGCATTGATTTGC | 57.0 | 0.10 |
| mm4_intergenic_Gm25937|Cxcl13_chr5_95901734_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm25937|Cxcl13_chr5_95901734_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm20828|Gm20812_chrY_11412102_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm20828|Gm20812_chrY_11412102_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm20822|Gm21809_chrY_16097452_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm20822|Gm21809_chrY_16097452_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Rheb|Prkag2_chr5_24846127_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Rheb|Prkag2_chr5_24846127_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_4930596D02Rik|Gm7853_chr14_35845921_F | TCGTCGGCAGCGTCCGGAAAGGGCAGAGGCTATG | 60.5 | 0.09 |
| mm4_intergenic_4930596D02Rik|Gm7853_chr14_35845921_R | GTCTCGTGGGCTCGGACATTAGGGAAAACAGGGCCC | 60.2 | 0.09 |
| mm4_intergenic_Gm16685|Gm24614_chr3_8411271_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm16685|Gm24614_chr3_8411271_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sulf2_chr2_166110475_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sulf2_chr2_166110475_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sergef_chr7_46637407_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sergef_chr7_46637407_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Pld5_chr1_176166233_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Pld5_chr1_176166233_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Ccnd2_chr6_127145313_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Ccnd2_chr6_127145313_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Wdr11|Gm23847_chr7_129822522_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Wdr11|Gm23847_chr7_129822522_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Prickle1|Adamts20_chr15_93730344_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Prickle1|Adamts20_chr15_93730344_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Palm2/Gm20459|Gm20459/Palm2_chr4_57621989_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Palm2/Gm20459|Gm20459/Palm2_chr4_57621989_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Il17rd|Arhgef3_chr14_27132025_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Il17rd|Arhgef3_chr14_27132025_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm6984|Htr2a_chr14_74602643_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm6984|Htr2a_chr14_74602643_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Cidea|Tubb6_chr18_67368586_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Cidea|Tubb6_chr18_67368586_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Chst3|Gm23488_chr10_60221178_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Chst3|Gm23488_chr10_60221178_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm2_intron_Gmpr_chr13_45531582_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm2_intron_Gmpr_chr13_45531582_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm2_intergenic_Zfand5|Gda_chr19_21372430_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm2_intergenic_Zfand5|Gda_chr19_21372430_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Mei1_chr15_82120010_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Mei1_chr15_82120010_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Prex1_chr2_166616685_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Prex1_chr2_166616685_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Loxl4|Gm25216_chr19_42655072_F | TCGTCGGCAGCGTCCCAGATTTGCCCACCAGTCA | 60.2 | 0.08 |
| mm4_intergenic_Loxl4|Gm25216_chr19_42655072_R | GTCTCGTGGGCTCGGGGGGAGGGAAGAGAGGAAGA | 59.6 | 0.08 |
| mm3_intron_Cyfip2_chr11_46242064_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intron_Cyfip2_chr11_46242064_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Parp16|Cilp_chr9_65258292_F | TCGTCGGCAGCGTCATCCCTTCAGAGTCGAGCCT | 60.0 | 0.08 |
| mm4_intergenic_Parp16|Cilp_chr9_65258292_R | GTCTCGTGGGCTCGGGGAAAGGCTGCTCTGAAGGT | 59.9 | 0.08 |
| mm4_intron_Npas2_chr1_39342009_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Npas2_chr1_39342009_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Abcc5_chr16_20392660_F | TCGTCGGCAGCGTCCAGCTGCCTCGACTTCTCTT | 59.7 | 0.08 |
| mm4_exon_Abcc5_chr16_20392660_R | GTCTCGTGGGCTCGGGGACTCCTCCCACTCCAGTA | 59.6 | 0.08 |
| mm4_intergenic_5430435G22Rik|Slc26a9_chr1_131739128_F | TCGTCGGCAGCGTCACAGACATGCACAGCCTTCT | 59.6 | 0.08 |
| mm4_intergenic_5430435G22Rik|Slc26a9_chr1_131739128_R | GTCTCGTGGGCTCGGGTCCTGTCTCCACATCTGGC | 60.1 | 0.08 |
| mm4_intron_B3galt1_chr2_68013352_F | TCGTCGGCAGCGTCGTGATCTCGTTGTTGGTCTCT | 57.6 | 0.07 |
| mm4_intron_B3galt1_chr2_68013352_R | GTCTCGTGGGCTCGGGCTTCTTTGACAGAGTAGCCT | 57.6 | 0.07 |
| mm4_intergenic_2410088K16Rik|Sh3bp4_chr1_88906542_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_2410088K16Rik|Sh3bp4_chr1_88906542_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_AC112986.1|Tsn_chr1_117578699_F | TCGTCGGCAGCGTCACAACCTCTTCATGCACAAGC | 59.3 | 0.07 |
| mm4_intergenic_AC112986.1|Tsn_chr1_117578699_R | GTCTCGTGGGCTCGGGAGCAGAGACCAGCACTGAG | 60.1 | 0.07 |
| mm4_intergenic_Gm12130|Gm23520_chr11_38566841_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm12130|Gm23520_chr11_38566841_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Cda_chr4_138351230_F | TCGTCGGCAGCGTCCTGCTATAACTGGCCCACCC | 60.1 | 0.07 |
| mm4_exon_Cda_chr4_138351230_R | GTCTCGTGGGCTCGGAAACGCCTGCTACCCACTAG | 59.7 | 0.07 |
| mm4_intron_9530036O11Rik_chr5_28893799_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_9530036O11Rik_chr5_28893799_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Rpl30-ps11|Atp6ap2_chrX_12494339_F | TCGTCGGCAGCGTCCTCAGCTTGACAGGCCTCTC | 60.1 | 0.07 |
| mm4_intergenic_Rpl30-ps11|Atp6ap2_chrX_12494339_R | GTCTCGTGGGCTCGGTACGGGCCTAAGCAAGAAGC | 60.1 | 0.07 |
| mm4_intron_Slc10a7_chr8_78589961_F | TCGTCGGCAGCGTCGCCTGTCATTTGAGCTGGGA | 60.3 | 0.07 |
| mm4_intron_Slc10a7_chr8_78589961_R | GTCTCGTGGGCTCGGAGGGAGTCGATCAAGGGGAA | 59.9 | 0.07 |
| mm4_intergenic_Slc39a8|Bank1_chr3_135971612_F | TCGTCGGCAGCGTCTTCCTGAGCTGCCTCCAAAG | 59.9 | 0.06 |
| mm4_intergenic_Slc39a8|Bank1_chr3_135971612_R | GTCTCGTGGGCTCGGTGCCACTGACCAGGTTTTCT | 59.4 | 0.06 |
| mm4_intron_Dapp1_chr3_137961371_F | TCGTCGGCAGCGTCATGCAATGTTCTCAGCCCCA | 59.9 | 0.06 |
| mm4_intron_Dapp1_chr3_137961371_R | GTCTCGTGGGCTCGGTGGAAGCGAGACAGGTAAGC | 59.7 | 0.06 |
| mm4_intergenic_Gm21874|Gm20821_chrY_9712585_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21874|Gm20821_chrY_9712585_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21820|AC132591.1_chrY_5455548_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21820|AC132591.1_chrY_5455548_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm20828|Gm20812_chrY_11350449_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm20828|Gm20812_chrY_11350449_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm20822|Gm21809_chrY_16035857_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm20822|Gm21809_chrY_16035857_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Mrpl36|Lpcat1_chr13_73336010_F | TCGTCGGCAGCGTCTAGCAGGCCAAGACAAAGGG | 59.9 | 0.06 |
| mm4_intergenic_Mrpl36|Lpcat1_chr13_73336010_R | GTCTCGTGGGCTCGGCTGTGCTCTTCAGCCCTTCA | 59.9 | 0.06 |
| mm4_intron_Rims1_chr1_22385871_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Rims1_chr1_22385871_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Ephx2|Chrna2_chr14_66135949_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Ephx2|Chrna2_chr14_66135949_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Polr3k_chr2_181869112_F | TCGTCGGCAGCGTCGGTCTACAGTAGAGCTTGTGC | 58.1 | 0.06 |
| mm4_exon_Polr3k_chr2_181869112_R | GTCTCGTGGGCTCGGCACTCTCATCTGAAGTTGGTCCA | 59.9 | 0.06 |
| mm4_intergenic_Rpap2|Gm26692_chr5_107665816_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rpap2|Gm26692_chr5_107665816_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Synm_chr7_67757850_F | TCGTCGGCAGCGTCGACCAACTTCCTGAGAGCCC | 60.0 | 0.06 |
| mm4_intron_Synm_chr7_67757850_R | GTCTCGTGGGCTCGGGCTCAGTTTGGCCCTAGTGT | 59.9 | 0.06 |
| mm4_intron_Herc2_chr7_56188312_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Herc2_chr7_56188312_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Asap2|Gm21989/Asap2_chr12_21148775_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Asap2|Gm21989/Asap2_chr12_21148775_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intron_Mertk_chr2_128770959_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Mertk_chr2_128770959_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm26106|Gm7729_chr18_27340339_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm26106|Gm7729_chr18_27340339_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm26686|Gm23056_chr1_128860783_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm26686|Gm23056_chr1_128860783_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Amer2|Spata13_chr14_60439894_F | TCGTCGGCAGCGTCTCACTCAGTGGCAAAGGACC | 59.8 | 0.05 |
| mm4_intergenic_Amer2|Spata13_chr14_60439894_R | GTCTCGTGGGCTCGGAGGTTGATGGACCCTGGTCT | 60.1 | 0.05 |
| mm3_intergenic_Gm9081|Avpr1a_chr10_122376681_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm9081|Avpr1a_chr10_122376681_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Prdm6_chr18_53509487_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Prdm6_chr18_53509487_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Pafah2_chr4_134417051_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Pafah2_chr4_134417051_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Lrig1_chr6_94610913_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Lrig1_chr6_94610913_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Ints6_chr14_62729395_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Ints6_chr14_62729395_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_D15Ertd621e_chr15_58440773_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_D15Ertd621e_chr15_58440773_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Ntsr2|Greb1_chr12_16670278_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Ntsr2|Greb1_chr12_16670278_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Jmjd1c|Nrbf2_chr10_67265345_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Jmjd1c|Nrbf2_chr10_67265345_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm5530|mmu-mir-6344_chr1_81788968_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm5530|mmu-mir-6344_chr1_81788968_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm5335|A730056A06Rik_chr7_73285709_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm5335|A730056A06Rik_chr7_73285709_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm26181|Triml1_chr8_43038093_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm26181|Triml1_chr8_43038093_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm16036|Sdk1_chr5_141764042_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm16036|Sdk1_chr5_141764042_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm15401|Tcf7l1_chr6_72644375_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm15401|Tcf7l1_chr6_72644375_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm12661|Olfr1377_chr11_50983473_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm12661|Olfr1377_chr11_50983473_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Col6a3|Mlph_chr1_90844420_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Col6a3|Mlph_chr1_90844420_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_B930082K07Rik/Lrrc49|Larp6_chr9_60709379_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_B930082K07Rik/Lrrc49|Larp6_chr9_60709379_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Agpat4|Tdgf1-ps2_chr17_12160500_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Agpat4|Tdgf1-ps2_chr17_12160500_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_4933440J02Rik|Krr1_chr10_111872379_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_4933440J02Rik|Krr1_chr10_111872379_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Arhgap24_chr5_102573277_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Arhgap24_chr5_102573277_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Thsd4_chr9_60484280_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Thsd4_chr9_60484280_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm13935|Gm10794_chr2_110593703_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm13935|Gm10794_chr2_110593703_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Ccdc171|Gm11415_chr4_83867899_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Ccdc171|Gm11415_chr4_83867899_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ttc17_chr2_94375022_F | TCGTCGGCAGCGTCTGGGAAGGAAACAGTCTGAGA | 58.3 | 0.04 |
| mm4_intron_Ttc17_chr2_94375022_R | GTCTCGTGGGCTCGGACCAGCTATTACACACTGGGG | 59.4 | 0.04 |
| mm4_intron_Camta1_chr4_151270871_F | TCGTCGGCAGCGTCAATTCTGCAGACGGGCTTGT | 60.2 | 0.04 |
| mm4_intron_Camta1_chr4_151270871_R | GTCTCGTGGGCTCGGCATTATGCGCTGTTGAGGCC | 59.9 | 0.04 |
| mm3_intron_Rnd1_chr15_98669122_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intron_Rnd1_chr15_98669122_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Zfp536_chr7_37602286_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Zfp536_chr7_37602286_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm23694|Igkv7-33_chr6_70035735_F | TCGTCGGCAGCGTCAAGCCACTCACATCCTCGTG | 60.0 | 0.04 |
| mm4_intergenic_Gm23694|Igkv7-33_chr6_70035735_R | GTCTCGTGGGCTCGGTGGAGTGAACTCTTGGCCTG | 59.6 | 0.04 |
| mm4_intron_Prkca_chr11_108017302_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Prkca_chr11_108017302_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm5161|Ephb1_chr9_101527177_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm5161|Ephb1_chr9_101527177_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Lin7b|Snrnp70_chr7_45376197_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Lin7b|Snrnp70_chr7_45376197_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm6990|A630007B06Rik_chr19_56769262_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm6990|A630007B06Rik_chr19_56769262_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Cachd1_chr4_100897753_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Cachd1_chr4_100897753_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Tgm5_chr2_121048304_F | TCGTCGGCAGCGTCGGGATGTCCTCTTGAGCAGG | 59.8 | 0.03 |
| mm4_intron_Tgm5_chr2_121048304_R | GTCTCGTGGGCTCGGGACTTTCCCGGGCATCATGA | 60.1 | 0.03 |
| mm4_exon_Phlda3_chr1_135768891_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Phlda3_chr1_135768891_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm2_intron_Col12a1_chr9_79641261_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm2_intron_Col12a1_chr9_79641261_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm7719|Gm24377_chr12_59551411_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm7719|Gm24377_chr12_59551411_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25761|Magi2_chr5_20118646_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25761|Magi2_chr5_20118646_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_1700080O16Rik|Gpc4_chrX_52017857_F | TCGTCGGCAGCGTCATTCTTGGCAGTCTGGCTCC | 60.0 | 0.03 |
| mm4_intergenic_1700080O16Rik|Gpc4_chrX_52017857_R | GTCTCGTGGGCTCGGGGCCCATGGAGGTTTCTTGA | 59.9 | 0.03 |
| mm4_intergenic_1700017N19Rik|Gm26278_chr10_100829313_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_1700017N19Rik|Gm26278_chr10_100829313_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Olfr251|Olfr147_chr9_38399664_F | TCGTCGGCAGCGTCAGACGATGATATTACCCATGTGGA | 59.1 | 0.02 |
| mm4_intergenic_Olfr251|Olfr147_chr9_38399664_R | GTCTCGTGGGCTCGGGGTCTCGATATAGATTTGTGGAAGT | 58.2 | 0.02 |
| mm4_intergenic_Id3|E2f2_chr4_136162297_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Id3|E2f2_chr4_136162297_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm10295|Mctp2_chr7_71457299_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm10295|Mctp2_chr7_71457299_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm11922|Map3k7_chr4_31731707_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm11922|Map3k7_chr4_31731707_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Rnf114_chr2_167512664_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Rnf114_chr2_167512664_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45958616_F | TCGTCGGCAGCGTCCAGGAGGAGAGGGACCAAGA | 59.9 | 0.02 |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45958616_R | GTCTCGTGGGCTCGGAGCCAGTGGGTTCCTTTGAA | 59.4 | 0.02 |
| mm4_intergenic_Osmr|Lifr_chr15_7041175_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Osmr|Lifr_chr15_7041175_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Sh3gl2|Gm12413_chr4_85225497_F | TCGTCGGCAGCGTCGTGTTGAGCATTGGCAGCTC | 60.1 | 0.02 |
| mm4_intergenic_Sh3gl2|Gm12413_chr4_85225497_R | GTCTCGTGGGCTCGGGACAAAAGGGTGAGGAGGGG | 59.9 | 0.02 |
| mm4_intron_Xylt1_chr7_117476793_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Xylt1_chr7_117476793_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Sardh_chr2_27242646_F | TCGTCGGCAGCGTCTTTACACCCCACCTTTCCCC | 59.5 | 0.02 |
| mm4_intron_Sardh_chr2_27242646_R | GTCTCGTGGGCTCGGACAAGAGGCTCATGTCGGTG | 60.0 | 0.02 |
| mm4_intergenic_Gm17212|Gm17213_chr3_69393254_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm17212|Gm17213_chr3_69393254_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Erc2_chr14_28335082_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Erc2_chr14_28335082_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gns_chr10_121387903_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Gns_chr10_121387903_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dennd1a_chr2_37984245_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dennd1a_chr2_37984245_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tas2r140|2700089E24Rik_chr6_133066446_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tas2r140|2700089E24Rik_chr6_133066446_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Runx1|AC124326.1_chr16_93055636_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Runx1|AC124326.1_chr16_93055636_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Smad2|Skor2_chr18_76718548_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Smad2|Skor2_chr18_76718548_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cyp2f2_chr7_27132058_F | TCGTCGGCAGCGTCACCATTCTTGGAGGACACCC | 59.3 | 0.01 |
| mm4_intron_Cyp2f2_chr7_27132058_R | GTCTCGTGGGCTCGGCCCTTGGTCCTGAGCTTTGT | 59.8 | 0.01 |
| mm2_intergenic_Zc3h12a|1700041M05Rik_chr4_125225750_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intergenic_Zc3h12a|1700041M05Rik_chr4_125225750_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Slc12a8_chr16_33522337_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Slc12a8_chr16_33522337_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Mlph_chr1_90940873_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Mlph_chr1_90940873_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Kctd1_chr18_15086619_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Kctd1_chr18_15086619_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ipmk_chr10_71369069_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ipmk_chr10_71369069_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm2373|5330416C01Rik_chr13_97576027_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm2373|5330416C01Rik_chr13_97576027_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm20646|Mrps9_chr1_42777228_F | TCGTCGGCAGCGTCCCCAGCTTCTACAGAACTCGG | 60.1 | 0.01 |
| mm4_intergenic_Gm20646|Mrps9_chr1_42777228_R | GTCTCGTGGGCTCGGATGGCCGAAGAAGAAAGGGT | 59.3 | 0.01 |
| mm4_intergenic_Gm25722|Gm10051_chr5_132826276_F | TCGTCGGCAGCGTCACACCCAGATTTGGTAGGGC | 59.6 | 0.01 |
| mm4_intergenic_Gm25722|Gm10051_chr5_132826276_R | GTCTCGTGGGCTCGGAGCCAGCTCTTTCCCAACTC | 59.9 | 0.01 |
| mm4_intergenic_Stmn4|Gm23899_chr14_66455265_F | TCGTCGGCAGCGTCAGCATAGATACCCCTCTGGCT | 59.8 | 0.01 |
| mm4_intergenic_Stmn4|Gm23899_chr14_66455265_R | GTCTCGTGGGCTCGGGAACTTTGGAGGCCTGGACA | 59.8 | 0.01 |
| mm4_intron_Grm7_chr6_111252489_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Grm7_chr6_111252489_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm26291|Gm17377_chr17_55165252_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm26291|Gm17377_chr17_55165252_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cdh13_chr8_118505925_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cdh13_chr8_118505925_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Galnt18_chr7_111744506_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Galnt18_chr7_111744506_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gfra2|Gm9192_chr14_71694369_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gfra2|Gm9192_chr14_71694369_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intron_Iqgap2_chr13_95733699_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intron_Iqgap2_chr13_95733699_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ldlrap1_chr4_134759592_F | TCGTCGGCAGCGTCGAGCCTGGGTTCACAGAGAG | 59.7 | 0.01 |
| mm4_intron_Ldlrap1_chr4_134759592_R | GTCTCGTGGGCTCGGAAGGAGGAATTGGGGCATGG | 60.0 | 0.01 |
| mm3_intron_B4galnt4_chr7_141063761_F | TCGTCGGCAGCGTCCGGAAGTGTTCAGCAGTCCT | 59.9 | 0.01 |
| mm3_intron_B4galnt4_chr7_141063761_R | GTCTCGTGGGCTCGGCTTCTCCCCATCTGCAGACG | 60.1 | 0.01 |
| mm4_intergenic_Aida|Mia3_chr1_183325514_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Aida|Mia3_chr1_183325514_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_9230115E21Rik|Fdx1_chr9_51914678_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_9230115E21Rik|Fdx1_chr9_51914678_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Rfx1_chr8_84091361_F | TCGTCGGCAGCGTCAGCACCCCACTACCCCTTC | 60.9 | 0.00 |
| mm4_exon_Rfx1_chr8_84091361_R | GTCTCGTGGGCTCGGTGATGTCTGACAGCCCTGTG | 59.6 | 0.00 |
| mm4_intergenic_Tmem132e|Gm24612_chr11_82453635_F | TCGTCGGCAGCGTCTGGCTGCCAGCTCTTCTAAC | 60.0 | 0.00 |
| mm4_intergenic_Tmem132e|Gm24612_chr11_82453635_R | GTCTCGTGGGCTCGGGCCATTGCTGCAGAAATCCC | 60.1 | 0.00 |
| mm4_intergenic_Gm9885|Mrpl46_chr7_78759222_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm9885|Mrpl46_chr7_78759222_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ctnna3|Gm22829_chr10_65291155_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ctnna3|Gm22829_chr10_65291155_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Stox2|4930448N21Rik/Gm10083_chr8_47406021_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Stox2|4930448N21Rik/Gm10083_chr8_47406021_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25183|Spats2_chr15_99147124_F | TCGTCGGCAGCGTCACCTTCTCATTACCTTTCTCCACC | 60.0 | 0.00 |
| mm4_intergenic_Gm25183|Spats2_chr15_99147124_R | GTCTCGTGGGCTCGGGGAACCTTGAAGTGTTTCACCG | 59.9 | 0.00 |
| mm4_intergenic_F3|Abcd3_chr3_121756433_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_F3|Abcd3_chr3_121756433_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tsku|Gucy2d_chr7_98404813_F | TCGTCGGCAGCGTCAGACTCCCAGCCCTGTATGT | 59.9 | 0.00 |
| mm4_intergenic_Tsku|Gucy2d_chr7_98404813_R | GTCTCGTGGGCTCGGAGGGATTGTGTGTTCTCTGGA | 58.6 | 0.00 |
| mm4_intron_Fhad1_chr4_141920661_F | TCGTCGGCAGCGTCCCGAGGGCTTCTAGCATCG | 60.0 | 0.00 |
| mm4_intron_Fhad1_chr4_141920661_R | GTCTCGTGGGCTCGGTGGGGCTGCAGAAGAAACTC | 60.2 | 0.00 |
| mm4_intergenic_Imp4|Ptpn18_chr1_34447579_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Imp4|Ptpn18_chr1_34447579_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24932|Syt9_chr7_107353016_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24932|Syt9_chr7_107353016_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fam172a_chr13_77804238_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fam172a_chr13_77804238_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Pcdh15_chr10_73724816_F | TCGTCGGCAGCGTCAGAGTCTTGCTTGTGAGGTGT | 59.2 | 0.00 |
| mm4_intron_Pcdh15_chr10_73724816_R | GTCTCGTGGGCTCGGCCAGACGTTGTCCTCTCACC | 60.0 | 0.00 |
| mm4_intergenic_Wnt9b|Wnt3_chr11_103753156_F | TCGTCGGCAGCGTCGGGGCTCTTCGGTTTGTCTT | 60.2 | 0.00 |
| mm4_intergenic_Wnt9b|Wnt3_chr11_103753156_R | GTCTCGTGGGCTCGGTCTTCTGGGTGAGCTCTTGC | 59.6 | 0.00 |
| mm4_intron_Vipr1_chr9_121666701_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Vipr1_chr9_121666701_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm9949|Htr4_chr18_62322615_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm9949|Htr4_chr18_62322615_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Camsap2_chr1_136343821_F | TCGTCGGCAGCGTCAAGCACACCAGACTCCAGTG | 59.8 | 0.00 |
| mm4_intron_Camsap2_chr1_136343821_R | GTCTCGTGGGCTCGGCTTCTGAGCAGAAACGCCCT | 60.3 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_intergenic_Myh9|Gm22107_chr15_77824847 |
CCCAAGACCTTGTCTCGCTTTCTGTATCATTACAGAAAACATAGGTCCCAGCTGACTTCCACTCAGAAAAAACTGGTGCT GGTGAAATGTAACG |
| mm3_exon_Ttll9_chr2_153006976 | CTTCAAGCGCAGAGGAAAGCCCCTAGCTGACCCCCAGTCAGAAGAAATGAGGCCCTGGCAGG |
| mm4_intron_Nos1_chr5_117901780 | GCATGCAAGGGGTTGTAAGCATGGTTCCCAGCTGACCCCAACCAAGAGATCTCCTAGGTGGCCACAAAA |
| mm4_intron_Atp8b5_chr4_43271402 |
AAGCAGCCCTGGTATTGTCCCATCCTGCACTGTACTGTACTTCAGTTTGTGCTTCCAGGACTTCTGTTCAAGCACCAAAC TGACCCCCTCCTAGAAACACCGTATAACCTGGGATCTGC |
| mm4_exon_Zfp292_chr4_34811035 |
TGGCCTTTCACATGAGCAATTAAATTTTTGAAGTACTTAAAGCCCTTTTTACAAAAGGTCACAGGACAATTAAACTCATT AACAGGTACTGGTTTCTGGACAGGGATCACCTCGGGCTCATAAGACTTGTCCTTGTCG |
| mm4_intergenic_Gm23752|Gm24815_chr12_6005925 |
CCAGGAAAATCGTGTGCTGCATGTGATCCAGGATGACTCTCAAAGGTCAATTTCAATAGATGGCAATCAGCTGGCGATCC TGGATGGGAATCAGCTGGGGAGCATTGTGGGGATCATCTGTGCC |
| mm4_intron_E130309F12Rik_chr4_49068024 |
GGGGACAAGCTTTGTGGCTAGTCAGTGTTTACTGGCAGGGAGTCAGCTTGGCATCCATGCAGGTAGTCCTTCAGCTATGG CAAATTTATGTTTTTCATCCATCACTAACAACCTGGAACAGAGTCACATGCACACACGA |
| mm4_intergenic_Ap3b1|Tbca_chr13_94654331 |
GCCACTGAGCATCTGTCAGTATGGAAATCAGCACTCCTAGCTGACCCCGATTGAGAACTCAGTGACAGCCCCACAATGCA AGGCGTCCCCTCTATCACCCGGAGGAGCAGGTGCCACCCAGCGCTATCCCACTGAGAG |
| mm3_intergenic_Cnpy1|Rbm33_chr5_28288660 |
TCCCTGTCCTTTAAAATGCCAAACAAATCATGAGACATGCCTTCCTAACCCCAGCTGACCCCCAGCAAGAAGTCTCCTTA AGACAAGCTGATTCCCTGATATCAGATTAGAATTAACCCACTCCTGCTCAGCTGACAA |
| mm4_intergenic_Arid5b|1700040L02Rik_chr10_68372482 |
GACCACTTGTGAGGAACCCCCAGTTACTAGTATTTAAATGAAAATCTGCAGATTTGTGATTTCTGGGGAGGGGTCAGCAT GGACCAGCACACTTCTCGGTATG |
| mm3_intron_Tspan11_chr6_127911954 |
CCCCGGCTAAAACTGAAGGTTTCCAAGAGAACAGAGTGTGTACATTTCCCCAGCTGTCCTCCATCCAGGAACTACTGCAA AGCCTCCTTGCTTTGTGTTCC |
| mm3_intergenic_Gm26651|Diras2_chr13_52037477 |
TCTGCTGTGACAAGGACTCTATTGTTTATCACTGAACCTTGACCGATACAGTGAGTGACACACTCGATTTCTTAACACGA AACTATCGTTGCATTTCTGGACGGAGTTCAGCTTGGTCAGAGTGTATCCTCTGCACACGC |
| mm3_intron_Obfc1_chr19_47532822 |
AGATCCATCTCAAGAAACAAGATCAAAAACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGAAGGTATCCTGCAAAGC |
| mm3_intergenic_1700092K14Rik|Gm11690_chr11_114218182 |
TCCACATCCCCGATCTAGCAAGAAACTCCTTCAGGGTCAACCAAACGGCCACCTGGGTTCTCTAGGAAGCCCTAATGGCA AATGGCTTTCAGAATGGGGCTCAGCTGGGGCGACTCAAGGCCGGGCTTTCATCAGAGGAG |
| mm4_intron_A730017C20Rik_chr18_59074874 |
GCTGTGGAAGGAACCCTGAACACCTAGCGTTATCCTTCCTGTATGGAAGTCAGCTGGGGATCTCTTGAAACTTAACCAAA TTTTTACCCCTGACACAGAGATGAGA |
| mm4_intergenic_Gm5432|Lpin1_chr12_16362874 | GCCCAGAAATCGCCCATCATCCCAGCTTAGCCCCATACAGACAGTCATGTCTCATCTCCGGGTCTCAACTTCTCCAC |
| mm4_intron_Cntln_chr4_85066653 |
GAACGCGATGCAGATTGACCCCCAGCTGACGCCAATGCAGAGAAGCTAGAACTCAAGCTTGCTGGTTTGACTATGAAGTG CAGCGAAGTAGCA |
| mm4_intergenic_Gm13662/Gm13663/Gm17250|Gm13662_chr2_71755461 |
CAACGGTTCCATCCTAGTGCTATTTAGAGTGTTATAAAGGCCTAGTGCACACCCAAGTGACCCCCATCTAGAAGTTAAAG TCTTTACATCAGTGGAATGTGGCTTAGGGATTCTTGGTCCATGCTTGGCAGGAAACCTG |
| mm4_intergenic_Pitx1|H2afy_chr13_55965871 |
TCCCCACTCTGTGATCACCTTCAAGACAAACAGAGCAGTTCCTCAGTGCCCCAGCTGATCCCCACCGAGCAAGCTGCTGG CTCTGTGGGAG |
| mm4_intergenic_Lingo1|Odf3l1_chr9_56782482 |
CTGAAGGGCCTGCTCTACACTTTCTAGATGGAAGATGGCTTTCACTCATTAGGCCCCATCTGGCCCCTTGGAACCCATTC CTAGCTGACCCTCAGCCACAAGCCAGGTCCCAGGGCCACCGAGCTCACCCTCACTCAGTG |
| mm4_intergenic_Etl4|Gm13335_chr2_20408628 |
GAGGCATCCTGTTTCCTCCCAGACTCCTGTCTTCTATCATCCACCCCCACCCCAGTGTCACTCAGGGAAGAAGATGGCTG CTTGTACTGGCTGGGGGACAGCTGGGCAGAGGGTGGGCTGTCTTTT |
| mm4_intergenic_Pgrmc2|Gm25487_chr3_41375132 |
TGGGATGGATGGAATCAAGCAGAAGGATCAGAGGTAGACATCCAACATCTGGATGTCGGTCAGCTTGGCGAGCAGCCAGA GCCACAGGCAGGTGGGCTGGCCCTCTGTGGCAGCTTGCTGGAGAACTCAGCCA |
| mm4_intergenic_Chrm3|Gm26861_chr13_9880557 |
TCCCAAGGCTTCTTGTCTGTCGTCTCTCATCCTTTCTTGCTAAAGGGTGACAGATTCCTATGACTGGCTTTCTTTTGTGT CCAAGCTGACACTCTTCCAGCAAGGTTTGAGACAGGCATTTGTCACCTGG |
| mm4_exon_Bai2_chr4_130013732 |
TGCTGAACTCTGCTGTTGGGCCTGGAGTGGCAGGGAAAGCCAGGATGTGCTGCTGCCTGGACTCCGGCCCAGCTCTCTGG GGATGGGGGTCAGTTGGGTTGGAGAATGATACGGAGGTGTCGCC |
| mm4_intergenic_4930401O12Rik|Gm11376_chr13_31284016 |
CAGCAGGTCATGAGGGGAAGAAAACGAACAGGAAGACACTAGACTCAAGAGAAACTATAGGCACTGCATACAGCCTTCTG GAAAGGGGTGAGCTTGGACAGGAGCCGATGCAGGCACTGTTAATGGCCCT |
| mm4_intergenic_M5C1000I18Rik/C2cd4b|C2cd4a_chr9_67815651 |
ACTTGTCTGTGCCAGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNAACGGTTTCTGGGTGGAGTTCAGCATGGATGCAAATCAATGCAACCTATTTTCT |
| mm4_intergenic_4930596D02Rik|Gm7853_chr14_35845921 |
CGGAAAGGGCAGAGGCTATGATTTCCAAGCTGACCTGGCTCCAGAAACATGTCCTGCCCCACAGGGCCCTGTTTTCCCTA ATGT |
| mm4_intergenic_Loxl4|Gm25216_chr19_42655072 |
CCAGATTTGCCCACCAGTCAGTGAACTAAATCTCACGCTTTCAGGAGGTGGATCAGCTGGGAGTCCCATGAACAGGTCAG TTCTTTTGGGATCTGTCCATCAGTGTGGTATTCCATCCTCTTCCTCTCTTCCCTCCCC |
| mm4_intergenic_Parp16|Cilp_chr9_65258292 |
ATCCCTTCAGAGTCGAGCCTGAGCTGAGCCCAGGCTGTGGTTCTATGGTTGGGGGCCAGCTTGGAACCTATCATCCATTC ATCATTGCCCAAACACTTGAGATGGGGGGCTGCATGCAACCTTCAGAGCAGCCTTTCC |
| mm4_exon_Abcc5_chr16_20392660 |
CAGCTGCCTCGACTTCTCTTTCTTGCCCCTGGTAGCCCTCTTGTCTTTTTTCATTTTGGGGGTCAGCTTGGGCGAGTTCT GTATACTGGAGTGGGAGGAGTCC |
| mm4_intergenic_5430435G22Rik|Slc26a9_chr1_131739128 |
ACAGACATGCACAGCCTTCTCCCAACTGACCCCAAACCACAAACAACACCCGCACTGCCCAAGCCAGATGTGGAGACAGG AC |
| mm4_intron_B3galt1_chr2_68013352 |
GTGATCTCGTTGTTGGTCTCTTATTTTGTTTTCTGTTTGGTTTTAATTTTTATCTTGATATGGATGTCTTCTTTGTATTT CTGAATGCGGTTCAACTGGGCTAACAGGTCTCCTTACTTAGGCTACTCTGTCAAAGAAGC |
| mm4_intergenic_AC112986.1|Tsn_chr1_117578699 |
ACAACCTCTTCATGCACAAGCTTTCTAACATTTCCAAAGTTTCTCTCAGAGAAAAAGGAAAATATCATATTTATGCTGTC TCTGCATGGGGGCCACCTGGGCTTTTTCAAGGGCTCAGTGCTGGTCTCTGCTC |
| mm4_exon_Cda_chr4_138351230 |
CTGCTATAACTGGCCCACCCCACTCACCTAGAGATGGCAATAGCCCTGAAATCCTTGTACCCTTCGGAGATGGCCTTCTG GATGGCAGTCCGCTCGGCACACACACCTAGTGGGTAGCAGGCGTTT |
| mm4_intergenic_Rpl30-ps11|Atp6ap2_chrX_12494339 |
CTCAGCTTGACAGGCCTCTCTGACTCTCAAAACCAGAAAGCTCGCCCATATGAACCCCTTCCAGAAACAGCAAAAGCATG TTAGACTTTCCATAGCCGTCTGTCTTCATGCTTCTTGCTTAGGCCCGTA |
| mm4_intron_Slc10a7_chr8_78589961 |
GCCTGTCATTTGAGCTGGGATCTTCTTTCTAGATGGTGCTCAGATAGGTGAACTTAGCAGTCATTTGCTCCCGAGTCCTC TGCTTCTGTTGCAGATTGCTTTTCCCCTTGATCGACTCCCT |
| mm4_intergenic_Slc39a8|Bank1_chr3_135971612 |
TTCCTGAGCTGCCTCCAAAGCTGAAGGTGAGATGCTACACTGAGGCTTCGCAGCTGGGGAATGGAAGCCCACCTGACCCC AGCCCAGAAAGGAAGCTCTGACGACTATGAAGAAAACCTGGTCAGTGGCA |
| mm4_intron_Dapp1_chr3_137961371 |
ATGCAATGTTCTCAGCCCCAGCAGAAGTCACCAGACTCCAAGCAGATCCTCATGCAGAAATATGTATTAATAACCATATT AATAAGCCAGGTATTTAGACAGCTTACCTGTCTCGCTTCCA |
| mm4_intergenic_Mrpl36|Lpcat1_chr13_73336010 |
TAGCAGGCCAAGACAAAGGGTCAGGGTATCAAGGTATTTGGGGCTACACATGCCACCAAGCTGAGCACCTTCCAGGAATG AAGAATGAAGGGCTGAAGAGCACAG |
| mm4_exon_Polr3k_chr2_181869112 |
GGTCTACAGTAGAGCTTGTGCCCCATTTGAACCCCATCCAAAAATCTATTTTAACCTCAATAAATTTAGAAAAGTTACAT ATTAAGGCTATGTGAAGAATGAGCTTATATATGGACCAACTTCAGATGAGAGTG |
| mm4_intron_Synm_chr7_67757850 |
GACCAACTTCCTGAGAGCCCCTCATCGTGTGATTTGGGAGTAATTCCAATTCTGGCTGGGAGTGAGCTAGGTTGGGAGCC AAACACTAGGGCCAAACTGAGC |
| mm4_intergenic_Amer2|Spata13_chr14_60439894 |
TCACTCAGTGGCAAAGGACCAAAGTCCTTCCCTACACCAGCAAAAGCTCCCCAGGTGAACGCCATCCATAAATGCACCCA GGAGAGGCGAGATGCCAAGGAGTAGAGAAGCTTAGACCAGGGTCCATCAACCT |
| mm4_intron_Ttc17_chr2_94375022 |
TGGGAAGGAAACAGTCTGAGAAAAAACCAAAATGAAAAAAACAAACCAAGCTCACCCCCCTCTAGCAACTGTTCTATCTC AACAAACAAGAAAGTTGTATTTACTGCATATATATTCCCCAGTGTGTAATAGCTGGT |
| mm4_intron_Camta1_chr4_151270871 |
AATTCTGCAGACGGGCTTGTAATTATTTAGCACTCTCCCTCTCTGACCCCCACCCAGATACATTAACTAATGGCCTCAAC AGCGCATAATG |
| mm4_intergenic_Gm23694|Igkv7-33_chr6_70035735 |
AAGCCACTCACATCCTCGTGTCAAAGGAAAGTACTGCAAACTCTTGAACTGTATTTTCCAACCTGACCATTATCCAGAAA GGCAGGCCAAGAGTTCACTCCA |
| mm4_intron_Tgm5_chr2_121048304 |
GGGATGTCCTCTTGAGCAGGCCCAGCTGCCTCCCATCCAGAGCTCAGGGCCCCAGGACCACTTTTGTAAGAGACCACCCT TTGCCTACATTAATCATGATGCCCGGGAAAGTC |
| mm4_intergenic_1700080O16Rik|Gpc4_chrX_52017857 | ATTCTTGGCAGTCTGGCTCCTCTTCTCTGGCAGGGGGTCAGCCTGGGGCCACTGGGGTCAAGAAACCTCCATGGGCC |
| mm4_intergenic_Olfr251|Olfr147_chr9_38399664 |
AGACGATGATATTACCCATGTGGATATATAATTTGTACATGTTTGTTGTCCTATATTGGTAGAATGATATTGTATCTTGA TGGTGGTCAGGTTGGTAGCAGTATTTTTAGGATTGACTTCCACAAATCTATATCGAGACC |
| mm4_intergenic_F630040K05Rik|Vegfa_chr17_45958616 |
CAGGAGGAGAGGGACCAAGAAGGGGACCTCAGGGGCCAGCTTGAGGCTGGGGGTCAGCTGAGTAGTTCTTTTATAGACCA CTAGATGTCACTTCCATTTCAAAGGAACCCACTGGCT |
| mm4_intergenic_Sh3gl2|Gm12413_chr4_85225497 |
GTGTTGAGCATTGGCAGCTCTGTCTTTTGGGAAGGGGGGCAGCTGGGATATGTGGTACAGAAGGATGCGCCCAGGGCTCG ATGGGAACTTCCCCTCCTCACCCTTTTGTC |
| mm4_intron_Sardh_chr2_27242646 |
TTTACACCCCACCTTTCCCCCTACGGAATACAATCCCCCACCTGAGCCCCCTGCAGAAAGCATGCCCAGCTTTCCCTAGG GGCACACCCACCGACATGAGCCTCTTGT |
| mm4_intron_Cyp2f2_chr7_27132058 |
ACCATTCTTGGAGGACACCCTCTCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA CTCAGAAATCCCGCGTCTGCTTCTACAAAGCTCAGGACCAAGGG |
| mm4_intergenic_Gm20646|Mrps9_chr1_42777228 |
CCCAGCTTCTACAGAACTCGGTTTTCTGACCTGTGAAAATTGGATAGTTTTCTGGATGTGTGTCCACTGGGCAGTAAGCT CAAGTTCAGAGCAGTGAAGGTCTACCCTTTCTTCTTCGGCCAT |
| mm4_intergenic_Gm25722|Gm10051_chr5_132826276 | ACACCCAGATTTGGTAGGGCTTTGCCTGGTCTGTGCTGGCTAGGGGTCAGCTGGAGTTGAGTTGGGAAAGAGCTGGCT |
| mm4_intergenic_Stmn4|Gm23899_chr14_66455265 |
AGCATAGATACCCCTCTGGCTTTACTCTAGTCATTGCTCAAACATTGTCAAAGGAAAGGTGTTTATTGATGGGGGTCTGC GTGGGCAGACAATATGTCCAGGCCTCCAAAGTTC |
| mm4_intron_Ldlrap1_chr4_134759592 |
GAGCCTGGGTTCACAGAGAGGGCAGGGGAGAGTTGGGAAGGGACCCACCTGGCCCCCATGCAGGAAAGATTGCTGAGATC AAGGGGGCTTAGACCCCAACGGAAGGTTTGGCCATGCCCCAATTCCTCCTT |
| mm3_intron_B4galnt4_chr7_141063761 |
CGGAAGTGTTCAGCAGTCCTTCTTGCCCCACCCCTCCAGCTGACCCCCAACAACAAAGATAATGGCCTTAAGGAGTCTGA GCTCTAACACGCCTCATATGCGTCTGCAGATGGGGAGAAG |
| mm4_exon_Rfx1_chr8_84091361 |
AGCACCCCACTACCCCTTCCCCTCCAGGCTGAAGCCCATCCAGAAGATGGAGGGCGTGGCCAACGGTGTTGCCGTGGGGC AGCAGAGCACAGGGCTGTCAGACATCA |
| mm4_intergenic_Tmem132e|Gm24612_chr11_82453635 |
TGGCTGCCAGCTCTTCTAACTCCATCCTTCTGTCCTCCTTTCCCAAAGCTGCATCTTAGTCCTCTTGAAGGGGTCTTTCT GGGGGGGGGTGAGGTGGGGGAGGGATTTCTGCAGCAATGGC |
| mm4_intergenic_Gm25183|Spats2_chr15_99147124 |
ACCTTCTCATTACCTTTCTCCACCTACATGCAGGTTGGGGGTCAGCTAGAGACATTTAAAAAGTTTTGACTCTCTGTGAT ATCTTTATCTTGAATCGGTGAAACACTTCAAGGTTCC |
| mm4_intergenic_Tsku|Gucy2d_chr7_98404813 |
AGACTCCCAGCCCTGTATGTTTCCAGGATCTGTGGGTATCTTGGGGTAAAGAGCCCCTTTGGCTTTGCTGGATGGGGAGT AGCTAGGGAGATCTTCTGTGTCATCCAGAGAACACACAATCCCT |
| mm4_intron_Fhad1_chr4_141920661 |
CCGAGGGCTTCTAGCATCGTGTGCAATGAGCAGCAGAGGGGCCGACGGAGAACATGGGGGTTTTTGGATGGGGTCCAGCC TGGGGCCATGCAGGAACAGTTAGATACGGAGTTTCTTCTGCAGCCCCA |
| mm4_intron_Pcdh15_chr10_73724816 |
AGAGTCTTGCTTGTGAGGTGTATATATTTATGATCTTTTTTTGACACATTTATTTTGTGTGTGTGTATTTTTCTGCATGG GGGTGGGGTGGGCTCCTCTGCGTCAAGCCATTCATGCAGAGGTGAGAGGACAACGTCTGG |
| mm4_intergenic_Wnt9b|Wnt3_chr11_103753156 |
GGGGCTCTTCGGTTTGTCTTCCTCCTTGTCCCACCCTCCTTGCTCCAGGCAGACCACCATCCTGAAACAAAGCCTCAGGA ACCACCCGTGCCTGGCTCCCTAGCAAGAGCTCACCCAGAAGA |
| mm4_intron_Camsap2_chr1_136343821 | AAGCACACCAGACTCCAGTGACCAGCCTGACACACATCCAGAAAGCAGGGCGTTTCTGCTCAGAAG |