← return to the list of all guides
Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313862_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313862_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm3_intergenic_Vdac3-ps1|Pou6f2_chr13_18078860_F | Primer3: not found at this Tm | N.d. | 0.52 |
| mm3_intergenic_Vdac3-ps1|Pou6f2_chr13_18078860_R | Primer3: not found at this Tm | N.d. | 0.52 |
| mm4_intergenic_Rpl21-ps10|Gm25574_chr3_38264254_F | Primer3: not found at this Tm | N.d. | 0.48 |
| mm4_intergenic_Rpl21-ps10|Gm25574_chr3_38264254_R | Primer3: not found at this Tm | N.d. | 0.48 |
| mm3_intergenic_D730003I15Rik|Nenf_chr1_191241422_F | TCGTCGGCAGCGTCTGCCTGCTCTGACTTGGTAG | 59.3 | 0.43 |
| mm3_intergenic_D730003I15Rik|Nenf_chr1_191241422_R | GTCTCGTGGGCTCGGTGCTGGAGTACCTACGACTGA | 59.9 | 0.43 |
| mm3_intergenic_C1galt1c1|Ap3s1-ps1_chrX_38673917_F | TCGTCGGCAGCGTCGAAGATGCTCAGAGCCTCCC | 59.8 | 0.42 |
| mm3_intergenic_C1galt1c1|Ap3s1-ps1_chrX_38673917_R | GTCTCGTGGGCTCGGACACGGGGTCATCATTCCAC | 60.0 | 0.42 |
| mm4_intergenic_Gm8793|Nkain2_chr10_31909870_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm8793|Nkain2_chr10_31909870_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm3_intergenic_Nr5a2|Gm23763_chr1_136969416_F | TCGTCGGCAGCGTCGGTTCCCTTGTAGGCTGTTCA | 59.9 | 0.37 |
| mm3_intergenic_Nr5a2|Gm23763_chr1_136969416_R | GTCTCGTGGGCTCGGAAACCCACTGGAAGGCACTC | 60.1 | 0.37 |
| mm4_intron_Dclk3_chr9_111451034_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intron_Dclk3_chr9_111451034_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm3_intergenic_Fmr1|Fmr1nb_chrX_68731057_F | Primer3: not found at this Tm | N.d. | 0.34 |
| mm3_intergenic_Fmr1|Fmr1nb_chrX_68731057_R | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intergenic_Gm23752|Gm24815_chr12_7234513_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm23752|Gm24815_chr12_7234513_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Ttll7|Gm23131_chr3_147226717_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Ttll7|Gm23131_chr3_147226717_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intron_Gm9962_chr7_57402843_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intron_Gm9962_chr7_57402843_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Cyp2b23|Cyp2b19_chr7_26711464_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Cyp2b23|Cyp2b19_chr7_26711464_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm3_intron_Fmn2_chr1_174663602_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intron_Fmn2_chr1_174663602_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intergenic_Apoo-ps|Zswim6_chr13_107503192_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intergenic_Apoo-ps|Zswim6_chr13_107503192_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Gm4889|Dusp4_chr8_34686443_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Gm4889|Dusp4_chr8_34686443_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Chrne|Gm12315_chr11_70620573_F | TCGTCGGCAGCGTCAGCCCTTTATGCGTTACACCT | 59.7 | 0.30 |
| mm4_intergenic_Chrne|Gm12315_chr11_70620573_R | GTCTCGTGGGCTCGGAGTGACCCTCCGCTACAGAT | 60.0 | 0.30 |
| mm4_intergenic_Prrxl1|3425401B19Rik_chr14_32655187_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Prrxl1|3425401B19Rik_chr14_32655187_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Ccdc148|Gm13550_chr2_59045614_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Ccdc148|Gm13550_chr2_59045614_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Fam188a_chr2_12367266_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_Fam188a_chr2_12367266_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Gm14823|Gm14855_chrX_105664437_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Gm14823|Gm14855_chrX_105664437_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Gm4487|Gm24073_chr14_114444730_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm4487|Gm24073_chr14_114444730_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intron_Dmd_chrX_84982329_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intron_Dmd_chrX_84982329_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm24477|Trp53rk_chr2_166773444_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm24477|Trp53rk_chr2_166773444_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Slc1a3|Gm5210_chr15_8741319_F | TCGTCGGCAGCGTCACGATGTGTGTGGAGACATGT | 59.6 | 0.27 |
| mm4_intergenic_Slc1a3|Gm5210_chr15_8741319_R | GTCTCGTGGGCTCGGACAATCCATGACAGCTGCCA | 59.9 | 0.27 |
| mm4_intergenic_Cish/Gm17041|Hemk1_chr9_107307784_F | TCGTCGGCAGCGTCGATTGGGAGGTGTGGGCTTT | 60.2 | 0.25 |
| mm4_intergenic_Cish/Gm17041|Hemk1_chr9_107307784_R | GTCTCGTGGGCTCGGCTTCTCTGCCCTCCATGAGC | 60.1 | 0.25 |
| mm4_intergenic_Gm13402/Med27|Med27_chr2_29364247_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm13402/Med27|Med27_chr2_29364247_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Tceal3_chrX_136660268_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Tceal3_chrX_136660268_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_D930016D06Rik|Gm8258_chr5_104697299_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm3_intergenic_D930016D06Rik|Gm8258_chr5_104697299_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm3_intergenic_D930016D06Rik|Gm8258_chr5_104640792_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm3_intergenic_D930016D06Rik|Gm8258_chr5_104640792_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm14513|Gm26314_chrX_11733130_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm14513|Gm26314_chrX_11733130_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Cntn5|Gm25365_chr9_11456616_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Cntn5|Gm25365_chr9_11456616_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Leo1|Tmod3_chr9_75481544_F | TCGTCGGCAGCGTCAGGAGGCAGAAGCGGCAG | 62.0 | 0.22 |
| mm4_intergenic_Leo1|Tmod3_chr9_75481544_R | GTCTCGTGGGCTCGGACGGCTTTTAGTGGCAACCT | 60.1 | 0.22 |
| mm4_intron_Kcnmb4_chr10_116446940_F | TCGTCGGCAGCGTCTTCGATTTGAAACAATGGCAACA | 58.3 | 0.22 |
| mm4_intron_Kcnmb4_chr10_116446940_R | GTCTCGTGGGCTCGGTGCCGTAACCTTATAACTCACAGT | 59.7 | 0.22 |
| mm4_intergenic_Sorcs3|AC116451.1_chr19_49418658_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Sorcs3|AC116451.1_chr19_49418658_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Zc3h6_chr2_129004885_F | TCGTCGGCAGCGTCTGTGAGTTCTGTTCTTCTCCCT | 58.6 | 0.21 |
| mm4_intron_Zc3h6_chr2_129004885_R | GTCTCGTGGGCTCGGGGAAGAACACAGACAAAGCAGT | 59.0 | 0.21 |
| mm4_intron_Cdk9_chr2_32708496_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Cdk9_chr2_32708496_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm12184/Trim7|Trim7_chr11_48832650_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm12184/Trim7|Trim7_chr11_48832650_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Lgr4_chr2_109944041_F | TCGTCGGCAGCGTCTAGATGCACCTGGGCTTTGG | 60.0 | 0.20 |
| mm4_intron_Lgr4_chr2_109944041_R | GTCTCGTGGGCTCGGACTAAAGTGAACCATTTCATGCC | 57.6 | 0.20 |
| mm4_intron_Zmat4_chr8_24087655_F | TCGTCGGCAGCGTCTGGCCCCTACCACAGTATCA | 59.9 | 0.20 |
| mm4_intron_Zmat4_chr8_24087655_R | GTCTCGTGGGCTCGGCAAATCTGTGATTCGGCTCTCT | 58.4 | 0.20 |
| mm4_intergenic_Nubpl|Arhgap5_chr12_52471758_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Nubpl|Arhgap5_chr12_52471758_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm5958|Klf12_chr14_99851237_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm5958|Klf12_chr14_99851237_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Olfr553|Olfr554_chr7_102639055_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Olfr553|Olfr554_chr7_102639055_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_n-R5s175|Gm2301_chr5_119313324_F | TCGTCGGCAGCGTCATCCCCTCCCTTCCCAACTT | 60.1 | 0.19 |
| mm4_intergenic_n-R5s175|Gm2301_chr5_119313324_R | GTCTCGTGGGCTCGGGGGGTCCAGTCTCTGCTCTA | 60.0 | 0.19 |
| mm4_intergenic_Adra2a|Gpam_chr19_54299779_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Adra2a|Gpam_chr19_54299779_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Slc37a1_chr17_31298558_F | TCGTCGGCAGCGTCGTGCACTCCTTCCAGAATGGA | 59.9 | 0.19 |
| mm4_intron_Slc37a1_chr17_31298558_R | GTCTCGTGGGCTCGGACAGTGCCAGACAGCCTTAA | 59.2 | 0.19 |
| mm4_intron_Cirh1a_chr8_106901894_F | TCGTCGGCAGCGTCTGACTGTTTTGGGCTCTGCT | 59.8 | 0.18 |
| mm4_intron_Cirh1a_chr8_106901894_R | GTCTCGTGGGCTCGGCGTGTGCTCGGACACTTATG | 59.0 | 0.18 |
| mm4_intergenic_Tas2r118|Slc13a1_chr6_24077015_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Tas2r118|Slc13a1_chr6_24077015_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Ptpra_chr2_130459217_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Ptpra_chr2_130459217_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Bsph2|RP24-317L6.1_chr7_13576408_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Bsph2|RP24-317L6.1_chr7_13576408_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Eif3b|Chst12_chr5_140492230_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Eif3b|Chst12_chr5_140492230_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Hk1_chr10_62319266_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Hk1_chr10_62319266_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Spef2|Gm26350_chr15_10009365_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Spef2|Gm26350_chr15_10009365_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm3_intergenic_5033426O07Rik|Gm26815_chr8_121222762_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm3_intergenic_5033426O07Rik|Gm26815_chr8_121222762_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Mcu_chr10_59514584_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Mcu_chr10_59514584_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Grin2b_chr6_135812714_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Grin2b_chr6_135812714_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Itga9_chr9_118624618_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Itga9_chr9_118624618_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Sv2c|Gm17190_chr13_96065547_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Sv2c|Gm17190_chr13_96065547_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm12723|Gm12726_chr4_105558449_F | TCGTCGGCAGCGTCCATGTGCATGCCCCATTTCC | 60.1 | 0.16 |
| mm4_intergenic_Gm12723|Gm12726_chr4_105558449_R | GTCTCGTGGGCTCGGTGAGTTACTGTGATGTCCTGGT | 58.7 | 0.16 |
| mm4_intron_Ush2a_chr1_188795780_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Ush2a_chr1_188795780_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Slc4a7_chr14_14735295_F | TCGTCGGCAGCGTCCAACTCACCTTAGGCCTGCA | 59.9 | 0.15 |
| mm4_intron_Slc4a7_chr14_14735295_R | GTCTCGTGGGCTCGGTCCTTCTTGCCATGTCTCACA | 59.3 | 0.15 |
| mm4_intron_Gfm2_chr13_97172101_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Gfm2_chr13_97172101_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Sntn|Rpl19-ps4/AC122290.1_chr14_13739204_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Sntn|Rpl19-ps4/AC122290.1_chr14_13739204_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_4933406K04Rik|1700013N06Rik_chr12_106723989_F | TCGTCGGCAGCGTCGTTGGTGGGTACTTAGGGCC | 60.0 | 0.15 |
| mm4_intergenic_4933406K04Rik|1700013N06Rik_chr12_106723989_R | GTCTCGTGGGCTCGGTGTTGGGATTCAGACAGCCT | 58.9 | 0.15 |
| mm4_intergenic_Gm14067|Gm14069_chr2_139082994_F | TCGTCGGCAGCGTCTCAGAGGTGACAATGGAGTGT | 58.6 | 0.15 |
| mm4_intergenic_Gm14067|Gm14069_chr2_139082994_R | GTCTCGTGGGCTCGGGCTGAAGCATTTGAATAGGCCT | 59.3 | 0.15 |
| mm4_intron_Nubpl_chr12_52135640_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Nubpl_chr12_52135640_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Gm15155_chrX_156186538_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Gm15155_chrX_156186538_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm15529|Gm5300_chr6_13041302_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm15529|Gm5300_chr6_13041302_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Elovl6|Egf_chr3_129640776_F | TCGTCGGCAGCGTCCTGGGAGCCACTAGCCTCTA | 60.1 | 0.14 |
| mm4_intergenic_Elovl6|Egf_chr3_129640776_R | GTCTCGTGGGCTCGGGAGATCCGGCAGATGTCAGG | 59.9 | 0.14 |
| mm4_exon_Irak3_chr10_120142309_F | TCGTCGGCAGCGTCGAGTGACTGACTGCTGGCTT | 59.9 | 0.14 |
| mm4_exon_Irak3_chr10_120142309_R | GTCTCGTGGGCTCGGAGCAGGACAAGTCTCTCTCT | 57.3 | 0.14 |
| mm3_intergenic_Lyzl6|Rprml_chr11_103644196_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Lyzl6|Rprml_chr11_103644196_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Erc2_chr14_27649363_F | TCGTCGGCAGCGTCCTTGCAGACTCCCTGAGGTT | 59.3 | 0.14 |
| mm4_intron_Erc2_chr14_27649363_R | GTCTCGTGGGCTCGGGGAGCTTGTCCTCCTCTGTC | 59.4 | 0.14 |
| mm4_intron_Ksr2_chr5_117611519_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Ksr2_chr5_117611519_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Rsrc1_chr3_67109647_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Rsrc1_chr3_67109647_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Nxnl2|Hist1h2al_chr13_51182371_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Nxnl2|Hist1h2al_chr13_51182371_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Clic6|2410124H12Rik_chr16_92488601_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Clic6|2410124H12Rik_chr16_92488601_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_4933416E14Rik|Tspan7_chrX_10427666_F | TCGTCGGCAGCGTCGCCCATAAAACCATAATATACTCCC | 57.3 | 0.13 |
| mm4_intergenic_4933416E14Rik|Tspan7_chrX_10427666_R | GTCTCGTGGGCTCGGCCCACCCCTATTAGACCCCA | 60.0 | 0.13 |
| mm4_intergenic_Gm5224|Gm5493_chr17_22737349_F | TCGTCGGCAGCGTCAGACCTATAGGAAGCAGACGGA | 59.8 | 0.13 |
| mm4_intergenic_Gm5224|Gm5493_chr17_22737349_R | GTCTCGTGGGCTCGGTTACTAGTGCTCTGTGCCGC | 60.1 | 0.13 |
| mm3_intergenic_Serpini1|Gm25846_chr3_75697346_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intergenic_Serpini1|Gm25846_chr3_75697346_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm24295|Mef2c_chr13_82910569_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm24295|Mef2c_chr13_82910569_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intergenic_Nek7|Lhx9_chr1_138796467_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intergenic_Nek7|Lhx9_chr1_138796467_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Shank2_chr7_144217935_F | TCGTCGGCAGCGTCCAGGCAGAAGAGGTCACCAG | 60.0 | 0.11 |
| mm4_intron_Shank2_chr7_144217935_R | GTCTCGTGGGCTCGGCCAAGTTCAGTGGCATGCAC | 60.0 | 0.11 |
| mm3_intergenic_1700018B24Rik|Gm23511_chr3_48847018_F | TCGTCGGCAGCGTCAAGTGAGTCACTGGAGCCTT | 58.5 | 0.11 |
| mm3_intergenic_1700018B24Rik|Gm23511_chr3_48847018_R | GTCTCGTGGGCTCGGGGCTACTTTCTCAGCCTGCA | 60.0 | 0.11 |
| mm4_intergenic_Mup-ps19|Mup-ps20_chr4_61986658_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Mup-ps19|Mup-ps20_chr4_61986658_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Tnfrsf19_chr14_60978551_F | TCGTCGGCAGCGTCTCAAAATAAGATCTCTCTGCTTTCC | 57.1 | 0.11 |
| mm4_intron_Tnfrsf19_chr14_60978551_R | GTCTCGTGGGCTCGGAAATAGAGTCGTATCACTTCCCC | 57.4 | 0.11 |
| mm4_intergenic_Gm25705|Gm11922_chr4_31289739_F | TCGTCGGCAGCGTCATCCCCTTGACCCCAAACTG | 59.5 | 0.11 |
| mm4_intergenic_Gm25705|Gm11922_chr4_31289739_R | GTCTCGTGGGCTCGGGCGGGTATCAAATATATTGCTTTCC | 58.6 | 0.11 |
| mm4_intron_Rnf152_chr1_105304852_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Rnf152_chr1_105304852_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm12004|4930554G24Rik_chr11_14071048_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm12004|4930554G24Rik_chr11_14071048_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm23447|Gm23773_chr17_61072205_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm23447|Gm23773_chr17_61072205_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm11499|Gm11500_chr11_92491427_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm11499|Gm11500_chr11_92491427_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Zswim6|Gm22118_chr13_107803951_F | TCGTCGGCAGCGTCGCCATTTGAAAGCCCAGACC | 59.7 | 0.10 |
| mm4_intergenic_Zswim6|Gm22118_chr13_107803951_R | GTCTCGTGGGCTCGGTCGATGTGCTTGATTAGGGACA | 59.5 | 0.10 |
| mm4_intergenic_Gm23239|Ntrk3_chr7_78143548_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm23239|Ntrk3_chr7_78143548_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Dnah2_chr11_69490661_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Dnah2_chr11_69490661_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Tspan9_chr6_128138511_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Tspan9_chr6_128138511_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm24350|Gm13464_chr2_42912982_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm24350|Gm13464_chr2_42912982_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Xkr4|Gm1992_chr1_3454980_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Xkr4|Gm1992_chr1_3454980_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Klhdc1_chr12_69243255_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Klhdc1_chr12_69243255_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm26372|Adk_chr14_21312654_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm26372|Adk_chr14_21312654_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm9621|Gm24200_chr9_93404536_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm9621|Gm24200_chr9_93404536_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Igf1_chr10_87880571_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Igf1_chr10_87880571_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm22628|5033411D12Rik_chr13_16418551_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm22628|5033411D12Rik_chr13_16418551_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm12634|Gm12635_chr4_90377689_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm12634|Gm12635_chr4_90377689_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_St3gal1|Zfat_chr15_67200839_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_St3gal1|Zfat_chr15_67200839_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm13463|Lrp1b_chr2_42164111_F | TCGTCGGCAGCGTCTCCAGCAAATCAGTGTGGAGA | 59.3 | 0.08 |
| mm4_intergenic_Gm13463|Lrp1b_chr2_42164111_R | GTCTCGTGGGCTCGGGGGACTGTAATTGGTGGAGGA | 59.0 | 0.08 |
| mm3_intergenic_Gm9081|Avpr1a_chr10_122380290_F | TCGTCGGCAGCGTCCCACTCTCTGCTGCCATGAT | 59.8 | 0.08 |
| mm3_intergenic_Gm9081|Avpr1a_chr10_122380290_R | GTCTCGTGGGCTCGGGGTCACATGGTGTTGGATGG | 58.8 | 0.08 |
| mm4_intergenic_Efcab5|Ssh2_chr11_77215899_F | TCGTCGGCAGCGTCACGTGTTCGCCTCAGGATTT | 59.9 | 0.08 |
| mm4_intergenic_Efcab5|Ssh2_chr11_77215899_R | GTCTCGTGGGCTCGGCAACCGAGGGTCCTGATCTG | 59.8 | 0.08 |
| mm4_intergenic_Mettl21c|Gm8251_chr1_44055394_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Mettl21c|Gm8251_chr1_44055394_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Slc22a23|Pxdc1_chr13_34378611_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Slc22a23|Pxdc1_chr13_34378611_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Tmem141|Fcna_chr2_25624500_F | TCGTCGGCAGCGTCGCACTTCTCTGTTCAGGGCT | 59.9 | 0.08 |
| mm4_intergenic_Tmem141|Fcna_chr2_25624500_R | GTCTCGTGGGCTCGGCAGCACCAGGAAGGAGTCAG | 60.0 | 0.08 |
| mm3_intron_5730455P16Rik_chr11_80373743_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intron_5730455P16Rik_chr11_80373743_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Gm24795|Gm8609_chr16_39865950_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Gm24795|Gm8609_chr16_39865950_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Cacna1e|Gm9530_chr1_154968720_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Cacna1e|Gm9530_chr1_154968720_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Zfat_chr15_68243306_F | TCGTCGGCAGCGTCACATTCTCTGCCAGGCACAA | 59.8 | 0.07 |
| mm4_intron_Zfat_chr15_68243306_R | GTCTCGTGGGCTCGGCAGGAGTCCTCAAAGCCAGG | 60.0 | 0.07 |
| mm4_exon_Ap3b1_chr13_94440239_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Ap3b1_chr13_94440239_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Nrg3|Gm10713_chr14_39901276_F | TCGTCGGCAGCGTCTGGATTGTACTGTCAATTGGTCA | 58.0 | 0.07 |
| mm4_intergenic_Nrg3|Gm10713_chr14_39901276_R | GTCTCGTGGGCTCGGAGAAGGATCAAAACTGTGGTTGA | 58.2 | 0.07 |
| mm3_intergenic_Gm24319|Psat1_chr19_15697952_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Gm24319|Psat1_chr19_15697952_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Dpyd|Gm23432_chr3_119614811_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Dpyd|Gm23432_chr3_119614811_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Otud7a|Klf13_chr7_63865601_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Otud7a|Klf13_chr7_63865601_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm4795|Prep_chr10_45049885_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm4795|Prep_chr10_45049885_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm10356|Gm5274_chr3_47060258_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm10356|Gm5274_chr3_47060258_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Atp6v1g3|Nek7_chr1_138467897_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Atp6v1g3|Nek7_chr1_138467897_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Bri3|Nptx2_chr5_144487843_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Bri3|Nptx2_chr5_144487843_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Mtif3|Lnx2_chr5_146968896_F | TCGTCGGCAGCGTCCGCTGTCCATTTGGGGTCAT | 60.6 | 0.06 |
| mm4_intergenic_Mtif3|Lnx2_chr5_146968896_R | GTCTCGTGGGCTCGGCATAGGGCTGCCAACAAAGC | 59.8 | 0.06 |
| mm4_intron_Sulf1_chr1_12775560_F | TCGTCGGCAGCGTCGGCACATGCAGCAGTTTTCT | 59.6 | 0.06 |
| mm4_intron_Sulf1_chr1_12775560_R | GTCTCGTGGGCTCGGCCTGTGAAGCTTCTGTGTCT | 57.4 | 0.06 |
| mm4_intron_Pcx_chr19_4591158_F | TCGTCGGCAGCGTCACCTTTGCCCTGCCTCATTT | 60.1 | 0.06 |
| mm4_intron_Pcx_chr19_4591158_R | GTCTCGTGGGCTCGGTCACCTCATCCTGCTCCAGT | 60.2 | 0.06 |
| mm4_intergenic_Trpc7|Gm22777_chr13_56925827_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Trpc7|Gm22777_chr13_56925827_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm25722|Gm10051_chr5_133067033_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm25722|Gm10051_chr5_133067033_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Gm24404|Nrg3_chr14_37836176_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Gm24404|Nrg3_chr14_37836176_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Orai2_chr5_136169471_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Orai2_chr5_136169471_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Atp11a_chr8_12773560_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Atp11a_chr8_12773560_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Hs6st2_chrX_51468860_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Hs6st2_chrX_51468860_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm14643|Gm26194_chrX_39928246_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm14643|Gm26194_chrX_39928246_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Efcab4b|Prmt8_chr6_127670931_F | TCGTCGGCAGCGTCCTTTTCTCACAAGCTGGCCC | 59.4 | 0.05 |
| mm4_intergenic_Efcab4b|Prmt8_chr6_127670931_R | GTCTCGTGGGCTCGGAGTGGCTCTCGTGCTTCTTC | 60.0 | 0.05 |
| mm4_intergenic_Gm23503|Fign_chr2_63869312_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm23503|Fign_chr2_63869312_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_AI429214|Gm25126_chr8_37231312_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_AI429214|Gm25126_chr8_37231312_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_4631405K08Rik|Plxna2_chr1_194565258_F | TCGTCGGCAGCGTCCAAGAGGAAGCACTGCCAGA | 59.9 | 0.05 |
| mm4_intergenic_4631405K08Rik|Plxna2_chr1_194565258_R | GTCTCGTGGGCTCGGACCCTGGGAAGATGTCCTTA | 57.3 | 0.05 |
| mm4_intergenic_Sergef|Gm15700_chr7_46539853_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Sergef|Gm15700_chr7_46539853_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Fam110b_chr4_5677876_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Fam110b_chr4_5677876_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Ndst4|Ugt8a_chr3_125827358_F | TCGTCGGCAGCGTCTCAGTTCCAGGCAGGGTACT | 60.1 | 0.05 |
| mm4_intergenic_Ndst4|Ugt8a_chr3_125827358_R | GTCTCGTGGGCTCGGGACTGGCAGGGGTTGTCTTG | 60.8 | 0.05 |
| mm4_intergenic_Nubpl|Arhgap5_chr12_52386405_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Nubpl|Arhgap5_chr12_52386405_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm16958|Ank2_chr3_127195304_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm16958|Ank2_chr3_127195304_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gm5483_chr16_36185827_F | TCGTCGGCAGCGTCGGGAGGCAGAGAAACAGACA | 59.3 | 0.05 |
| mm4_intron_Gm5483_chr16_36185827_R | GTCTCGTGGGCTCGGGGGATTTCCATAATATGTGCCCC | 59.2 | 0.05 |
| mm4_intergenic_Gm23339|Gm25570_chr6_105248035_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm23339|Gm25570_chr6_105248035_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_1700007B14Rik_chr8_75775140_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_1700007B14Rik_chr8_75775140_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm15219|Cdkn3_chr14_46623957_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm15219|Cdkn3_chr14_46623957_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm26137|Gm23733_chr3_120104070_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm26137|Gm23733_chr3_120104070_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Rab31_chr17_65684069_F | TCGTCGGCAGCGTCACAGCAGGCTTCTCCTTTCT | 58.9 | 0.04 |
| mm4_intron_Rab31_chr17_65684069_R | GTCTCGTGGGCTCGGAGCATATTTGAGGCCCAGCA | 59.7 | 0.04 |
| mm4_intron_Golga7b_chr19_42249897_F | TCGTCGGCAGCGTCGATGAAGTGCCGTGCTTGTG | 60.1 | 0.04 |
| mm4_intron_Golga7b_chr19_42249897_R | GTCTCGTGGGCTCGGTCGTCAGTTCCTTCAGTCAGC | 60.0 | 0.04 |
| mm4_intron_Rad18_chr6_112677905_F | TCGTCGGCAGCGTCAGCAGGTCACAAGATACCGA | 58.4 | 0.04 |
| mm4_intron_Rad18_chr6_112677905_R | GTCTCGTGGGCTCGGACCCACAGTTTGTTGATGGGA | 59.7 | 0.04 |
| mm4_intron_Sdk2_chr11_113844983_F | TCGTCGGCAGCGTCAAAGTACCCACCTTCCTGCC | 59.5 | 0.04 |
| mm4_intron_Sdk2_chr11_113844983_R | GTCTCGTGGGCTCGGACCCTGCACCATAAATTCATCA | 58.0 | 0.04 |
| mm4_intergenic_Gm23434|Cntnap5b_chr1_99355106_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm23434|Cntnap5b_chr1_99355106_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Alcam|Gm25723_chr16_52596586_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Alcam|Gm25723_chr16_52596586_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25255|Csmd1_chr8_15848596_F | TCGTCGGCAGCGTCACACACAGCCTATTCACGAGA | 59.1 | 0.03 |
| mm4_intergenic_Gm25255|Csmd1_chr8_15848596_R | GTCTCGTGGGCTCGGGCCTCAGTTTCACCACACGA | 60.5 | 0.03 |
| mm3_intron_Pde1c_chr6_56116771_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intron_Pde1c_chr6_56116771_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm26651|Diras2_chr13_51978542_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm26651|Diras2_chr13_51978542_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tmtc1|Gm6313_chr6_148552469_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tmtc1|Gm6313_chr6_148552469_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Arhgef3_chr14_27286013_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Arhgef3_chr14_27286013_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tpt1-ps2|Gm12478_chr4_54622543_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tpt1-ps2|Gm12478_chr4_54622543_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Egfem1_chr3_29355167_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Egfem1_chr3_29355167_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Kcnh8|Efhb_chr17_53335919_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Kcnh8|Efhb_chr17_53335919_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ppp1r12b_chr1_134887091_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ppp1r12b_chr1_134887091_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24396|Rit2_chr18_30903199_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24396|Rit2_chr18_30903199_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intron_Wdr96_chr19_47817445_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intron_Wdr96_chr19_47817445_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Lpgat1_chr1_191760054_F | TCGTCGGCAGCGTCCCAACAGCTGCTGGTTCTCA | 60.5 | 0.03 |
| mm4_exon_Lpgat1_chr1_191760054_R | GTCTCGTGGGCTCGGTGGCTTGTTTCTCGCCTCTT | 59.8 | 0.03 |
| mm4_intergenic_Cdh7|Cdh19_chr1_110478211_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cdh7|Cdh19_chr1_110478211_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_mmu-mir-6373|Gm26022_chr6_102807076_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_mmu-mir-6373|Gm26022_chr6_102807076_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Atp6v0a1_chr11_101040348_F | TCGTCGGCAGCGTCCCACCACCACAAACAAACAAAC | 59.2 | 0.03 |
| mm4_intron_Atp6v0a1_chr11_101040348_R | GTCTCGTGGGCTCGGTGTAAGTCAGTTTTGGGGTTTGT | 58.6 | 0.03 |
| mm4_intergenic_Fbxo15|Gm25453_chr18_85962005_F | TCGTCGGCAGCGTCTCCACCCAACATGTGAGGTT | 59.1 | 0.03 |
| mm4_intergenic_Fbxo15|Gm25453_chr18_85962005_R | GTCTCGTGGGCTCGGTGACTCCTGTACTTAAACACGG | 57.7 | 0.03 |
| mm4_intron_Cdc6_chr11_98916849_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Cdc6_chr11_98916849_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm15212|Gm15214_chrX_163293655_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm15212|Gm15214_chrX_163293655_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Epha6|Gm24755_chr16_60225287_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Epha6|Gm24755_chr16_60225287_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Hace1_chr10_45655125_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Hace1_chr10_45655125_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Ppargc1b|Gm25834_chr18_61445263_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Ppargc1b|Gm25834_chr18_61445263_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Nckap5_chr1_126409085_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Nckap5_chr1_126409085_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm26520_chr12_3356790_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm26520_chr12_3356790_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25384|Cxcr4_chr1_128515645_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25384|Cxcr4_chr1_128515645_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Igkv10-95|Igkv10-94_chr6_68687182_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Igkv10-95|Igkv10-94_chr6_68687182_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Spesp1|Anp32a_chr9_62317519_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Spesp1|Anp32a_chr9_62317519_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Mapre1_chr2_153766536_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Mapre1_chr2_153766536_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Fam180a|Mtpn_chr6_35480753_F | TCGTCGGCAGCGTCACAAAACACCTAAGGCGAGG | 58.1 | 0.02 |
| mm4_intergenic_Fam180a|Mtpn_chr6_35480753_R | GTCTCGTGGGCTCGGAGCCATGGAGCTCACAAAGT | 59.5 | 0.02 |
| mm4_intron_E230008N13Rik_chr4_45933898_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_E230008N13Rik_chr4_45933898_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Pkd2l2_chr18_34436959_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Pkd2l2_chr18_34436959_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fam110b|Gm11796_chr4_5827951_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fam110b|Gm11796_chr4_5827951_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Mut|Gm6771_chr17_41225277_F | TCGTCGGCAGCGTCACAGCAGATTAACAGCCCCA | 59.3 | 0.01 |
| mm4_intergenic_Mut|Gm6771_chr17_41225277_R | GTCTCGTGGGCTCGGGTTGCCCTATGCGACCTTAGT | 60.1 | 0.01 |
| mm4_intron_Rcor1_chr12_111062402_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Rcor1_chr12_111062402_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ptgis/1110018N20Rik|Gm14291_chr2_167194530_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ptgis/1110018N20Rik|Gm14291_chr2_167194530_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Zfp318_chr17_46389028_F | TCGTCGGCAGCGTCAGGTTGTAGCGCCATTAGCA | 59.7 | 0.01 |
| mm4_intron_Zfp318_chr17_46389028_R | GTCTCGTGGGCTCGGTGGTCTATTCAATTAGCCGAAGACT | 59.8 | 0.01 |
| mm4_exon_Mpp6_chr6_50110998_F | TCGTCGGCAGCGTCGTGGATTGGTTGGGGTGTCT | 59.8 | 0.01 |
| mm4_exon_Mpp6_chr6_50110998_R | GTCTCGTGGGCTCGGTGAATGTTTTCTCGAGCTGCG | 59.5 | 0.01 |
| mm4_intron_Slc26a7_chr4_14601018_F | TCGTCGGCAGCGTCTGGCACAGGGTCTTAAGTATGA | 58.8 | 0.01 |
| mm4_intron_Slc26a7_chr4_14601018_R | GTCTCGTGGGCTCGGAAGATGCAGTCTCCTGGCTG | 59.7 | 0.01 |
| mm3_intergenic_Vmn2r17|Gm8488_chr5_109522832_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Vmn2r17|Gm8488_chr5_109522832_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Calcrl_chr2_84373421_F | TCGTCGGCAGCGTCTTCACGCCTTCTTCCGACTC | 60.0 | 0.01 |
| mm4_intron_Calcrl_chr2_84373421_R | GTCTCGTGGGCTCGGGCACCTCTGCTCTTGCTGTT | 60.8 | 0.01 |
| mm3_intergenic_Gm23892|Gm25382_chr10_16758786_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm23892|Gm25382_chr10_16758786_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Pax7_chr4_139827792_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Pax7_chr4_139827792_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Dync1i1|Slc25a13_chr6_6031241_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Dync1i1|Slc25a13_chr6_6031241_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ceacam10|Gm5893_chr7_24810001_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ceacam10|Gm5893_chr7_24810001_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm22254|Gm8993_chr6_74803402_F | TCGTCGGCAGCGTCGCCCTACAGGAAACATTGCC | 59.1 | 0.01 |
| mm4_intergenic_Gm22254|Gm8993_chr6_74803402_R | GTCTCGTGGGCTCGGTGCTGGCACTTGTATTGATATACA | 58.3 | 0.01 |
| mm4_intron_Dtnb_chr12_3579550_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dtnb_chr12_3579550_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Syn3_chr10_86216209_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Syn3_chr10_86216209_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Pip5k1b_chr19_24344215_F | TCGTCGGCAGCGTCCTTACCCACCCACCATCACC | 60.0 | 0.00 |
| mm4_intron_Pip5k1b_chr19_24344215_R | GTCTCGTGGGCTCGGTGGTATTTGGGGTTGGGGTT | 59.1 | 0.00 |
| mm4_intergenic_Gm5641|Gm26678_chr3_54559062_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5641|Gm26678_chr3_54559062_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Ube2nl|Gm25533_chr7_61650468_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Ube2nl|Gm25533_chr7_61650468_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zfp207_chr11_80402754_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zfp207_chr11_80402754_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Unc5d|4933433F19Rik_chr8_29450200_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Unc5d|4933433F19Rik_chr8_29450200_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm2_intergenic_Lilra6|Gm7363_chr7_3983025_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm2_intergenic_Lilra6|Gm7363_chr7_3983025_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rbms3|Gm26614_chr9_117824180_F | TCGTCGGCAGCGTCCGGCTTGAACAGAATTCGGT | 58.8 | 0.00 |
| mm4_intergenic_Rbms3|Gm26614_chr9_117824180_R | GTCTCGTGGGCTCGGAGGAGGGAGTAGCCATACAGG | 60.1 | 0.00 |
| mm4_intron_Tenm4_chr7_96844135_F | TCGTCGGCAGCGTCCCTGGACATCCCCTGTTGAG | 59.7 | 0.00 |
| mm4_intron_Tenm4_chr7_96844135_R | GTCTCGTGGGCTCGGGACAGGAGACAGGCGTTGAA | 59.9 | 0.00 |
| mm4_intron_Scaper_chr9_55594362_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Scaper_chr9_55594362_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Robo1_chr16_72867275_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Robo1_chr16_72867275_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Oxsr1_chr9_119297852_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Oxsr1_chr9_119297852_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Mapre2_chr18_23872163_F | TCGTCGGCAGCGTCAGGAGAGGGAGGAACAGTCC | 59.9 | 0.00 |
| mm4_intron_Mapre2_chr18_23872163_R | GTCTCGTGGGCTCGGGTGTTAAGTATATGGGCACACGC | 59.9 | 0.00 |
| mm4_intron_Grid1_chr14_35129455_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Grid1_chr14_35129455_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gpd2_chr2_57345502_F | TCGTCGGCAGCGTCGCAACTTGCTGGGCCTTTC | 60.0 | 0.00 |
| mm4_intron_Gpd2_chr2_57345502_R | GTCTCGTGGGCTCGGGTGGGGAGGAAAAGGCTGAG | 60.3 | 0.00 |
| mm4_intron_Gm5432_chr12_15861906_F | TCGTCGGCAGCGTCGGAGTCAGGCAACAGCAGAT | 60.0 | 0.00 |
| mm4_intron_Gm5432_chr12_15861906_R | GTCTCGTGGGCTCGGGGCCAAGGATAGGGAAAAGGG | 60.4 | 0.00 |
| mm4_intron_Fyn_chr10_39470707_F | TCGTCGGCAGCGTCGTGCATACACAGCATACGTGT | 59.0 | 0.00 |
| mm4_intron_Fyn_chr10_39470707_R | GTCTCGTGGGCTCGGACCAAAGCAGGACTGAAGCA | 59.8 | 0.00 |
| mm4_intron_B3galt1_chr2_67889828_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_B3galt1_chr2_67889828_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Slc35f1|Gm25664_chr10_52879267_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Slc35f1|Gm25664_chr10_52879267_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_RP23-18M12.1|Tinag_chr9_76950741_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_RP23-18M12.1|Tinag_chr9_76950741_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pitx1|H2afy_chr13_56015700_F | TCGTCGGCAGCGTCAGGAGAATTGAGAGAGACTGTCA | 58.3 | 0.00 |
| mm4_intergenic_Pitx1|H2afy_chr13_56015700_R | GTCTCGTGGGCTCGGGTCTGGTTTACACTGAGCTGGA | 59.9 | 0.00 |
| mm4_intergenic_Mtpn|Gm23273_chr6_35785808_F | TCGTCGGCAGCGTCCCAGATGACAAGGGAGCCTC | 59.8 | 0.00 |
| mm4_intergenic_Mtpn|Gm23273_chr6_35785808_R | GTCTCGTGGGCTCGGGGGTGAAAATACACACAATTTCAGA | 58.2 | 0.00 |
| mm4_intergenic_Gm8183|Tmem135_chr7_88881942_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8183|Tmem135_chr7_88881942_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26878|Fendrr_chr8_121043439_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26878|Fendrr_chr8_121043439_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25976|Acot10_chr15_20378920_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25976|Acot10_chr15_20378920_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25656|Cntn6_chr6_103962239_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25656|Cntn6_chr6_103962239_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23965|Gm23537_chr1_103823917_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23965|Gm23537_chr1_103823917_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23056|Thsd7b_chr1_129253466_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23056|Thsd7b_chr1_129253466_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm14740|Gm14739_chrX_82566908_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm14740|Gm14739_chrX_82566908_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10855|Gm10115_chr2_6945362_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10855|Gm10115_chr2_6945362_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10803|Alx4_chr2_93630114_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10803|Alx4_chr2_93630114_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Fmn1|Grem1_chr2_113743362_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Fmn1|Grem1_chr2_113743362_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Dscaml1|Cep164_chr9_45753697_F | TCGTCGGCAGCGTCCCAAGAAAACCGGGAGTTGC | 59.6 | 0.00 |
| mm4_intergenic_Dscaml1|Cep164_chr9_45753697_R | GTCTCGTGGGCTCGGGCCCTTGCCAGATGGGAAAA | 60.9 | 0.00 |
| mm4_intergenic_Cyp2c37|Cyp2c54_chr19_40013158_F | TCGTCGGCAGCGTCACAGATTTAAAATCAGACTTGCCA | 57.1 | 0.00 |
| mm4_intergenic_Cyp2c37|Cyp2c54_chr19_40013158_R | GTCTCGTGGGCTCGGACCTTTGTTGCTGGCTTTGA | 58.5 | 0.00 |
| mm4_intergenic_Ctbp2|Tex36_chr7_133145960_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ctbp2|Tex36_chr7_133145960_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cep120|Csnk1g3_chr18_53847122_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cep120|Csnk1g3_chr18_53847122_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ccng1|Gm24446_chr11_40940368_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ccng1|Gm24446_chr11_40940368_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_4931417E11Rik|Gm26179_chr6_73631806_F | TCGTCGGCAGCGTCGCTTAAAGGAGGAGAGAGCTGA | 59.2 | 0.00 |
| mm4_intergenic_4931417E11Rik|Gm26179_chr6_73631806_R | GTCTCGTGGGCTCGGAACTGTCCCGAAGCTCTGAC | 59.6 | 0.00 |
| mm4_intergenic_1700112E06Rik|Gm10248_chr14_22915664_F | TCGTCGGCAGCGTCAGAGCACTGGCAAACCTTGA | 59.8 | 0.00 |
| mm4_intergenic_1700112E06Rik|Gm10248_chr14_22915664_R | GTCTCGTGGGCTCGGCCTAACGCTTCCTTGGCTCA | 60.0 | 0.00 |
| mm3_intron_Sgms1_chr19_32212661_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Sgms1_chr19_32212661_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Mllt1_chr17_56931521_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Mllt1_chr17_56931521_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Mcm9_chr10_53625053_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Mcm9_chr10_53625053_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Eml1_chr12_108418714_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Eml1_chr12_108418714_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Nolc1|Elovl3_chr19_46124280_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Nolc1|Elovl3_chr19_46124280_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm3_intergenic_D730003I15Rik|Nenf_chr1_191241422 |
TGCCTGCTCTGACTTGGTAGCTAGCTCTTCTAAGTTCTCTACATTGCTTTGGAAGTTTTAGCCTATAAACTCAGGAGGAA GATCTAAGAAAAAGCCCTCCATCCAGAAACAAAGCCAACTCAGTCGTAGGTACTCCAGCA |
| mm3_intergenic_C1galt1c1|Ap3s1-ps1_chrX_38673917 |
GAAGATGCTCAGAGCCTCCCCAGAGTTATGTTTCTGGAAGGAGGCTCTCAGGATCTGACTGAATAGTGGAATGATGACCC CGTGT |
| mm3_intergenic_Nr5a2|Gm23763_chr1_136969416 |
GGTTCCCTTGTAGGCTGTTCACTTGTTGGTTATGTGCCTGGATGGGGGTGGAGCCCATAGCTTTGTGCATAGCTGGTGAG TGCCTTCCAGTGGGTTT |
| mm4_intergenic_Chrne|Gm12315_chr11_70620573 |
AGCCCTTTATGCGTTACACCTTATGCATCACCCCAATCCAGGAAAATAATCATGTCTGTCCTGAATTTGTGAAAAGATCT GTAGCGGAGGGTCACT |
| mm4_intergenic_Slc1a3|Gm5210_chr15_8741319 |
ACGATGTGTGTGGAGACATGTAGTGACCACTAGAGCATGAGTATGGTTCTGGATGAGGGAAGATAGGAGCTGACCTCTTA AAGAACTGACCTCCCGGCAGGCTTTCTGAGGAAGAACCTGGCAGCTGTCATGGATTGT |
| mm4_intergenic_Cish/Gm17041|Hemk1_chr9_107307784 |
GATTGGGAGGTGTGGGCTTTGGAGACAACAGCGCCCCCCATCCAACAACTTGACCATCCCTAGTCTCTCTCCTGGGTACC AGCAGGTTACCTGTGGGTGCTCATGGAGGGCAGAGAAG |
| mm4_intergenic_Leo1|Tmod3_chr9_75481544 |
AGGAGGCAGAAGCGGCAGCAGCGTCCAGGTCGGAGTTCCACCTTCCAGAAGCCTAACCTTGTTGTTNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNGCAAGGCCTCCATCGAGGTTGCCACTAAAAGCCGT |
| mm4_intron_Kcnmb4_chr10_116446940 |
TTCGATTTGAAACAATGGCAACAAACAAACAAACAGAAAACCCCAATCTAGTAACAAAACCATCTCCAGTCACTAAGAAG TAAGGACATTTTATTAACTGTGAGTTATAAGGTTACGGCA |
| mm4_intron_Zc3h6_chr2_129004885 |
TGTGAGTTCTGTTCTTCTCCCTAAAAAGTGCATAAACATCACAATGTACAAAACCTCTCATTCCCACCATCTAGAAACAT ATGCTTGTAGCTTCTCTGGCCTATTTTTCTCTCTTTTTACTGCTTTGTCTGTGTTCTTCC |
| mm4_intron_Lgr4_chr2_109944041 |
TAGATGCACCTGGGCTTTGGGCATATGGGGGTCTGGGATGACTTCATTGTAATGTTTTTGGATTGTGGGGCATGAAATGG TTCACTTTAGT |
| mm4_intron_Zmat4_chr8_24087655 |
TGGCCCCTACCACAGTATCATCTTTTCACTGGTAACGGGATATAGTCCTGAGTAATGATTCTTCCAGTCTACTAGGAATG TAAGATGAGCAAATGGAAATGTCTTTGGATGGTGGTAAAGAGAGCCGAATCACAGATTTG |
| mm4_intergenic_n-R5s175|Gm2301_chr5_119313324 |
ATCCCCTCCCTTCCCAACTTCCCTCCATCCTGAGATCTAACCATTAAGGCTCATGAAATAACACTGGATGAGGGCTCTCA CACATCTGCAGTGTTTTAGAGCAGAGACTGGACCCC |
| mm4_intron_Slc37a1_chr17_31298558 |
GTGCACTCCTTCCAGAATGGATGCCCAACCCCCATCCAGCTACATCATCATCTCAGTGAAATGGCTAGCATTATTTATAG AAGCCAGGAGGGTTTTTTTTTTTCCCTGATAACTCTTTAAGGCTGTCTGGCACTGT |
| mm4_intron_Cirh1a_chr8_106901894 |
TGACTGTTTTGGGCTCTGCTATACATGACATGTTCATGATTCTGGATTGTGGTTTTTAATCTCTGTACGTTATTGACTTC AACACCTGAGTCTTCCCTTTGTACCTTGTGTCATAAGTGTCCGAGCACACG |
| mm4_intergenic_Gm12723|Gm12726_chr4_105558449 |
CATGTGCATGCCCCATTTCCAATGAGCCATTGTTGCTCCCCCCATCCAGAAACAGAATATTTTTGTATACTATGAAACCA GGACATCACAGTAACTCA |
| mm4_intron_Slc4a7_chr14_14735295 |
CAACTCACCTTAGGCCTGCATTTTGAAACTGTTCTCTAGTTTGACAGAATTTGAAAAATAATAGTTCTGTCTCTGGATAG TGGGTAGCCCAGACTCTGAATTGTGAGACATGGCAAGAAGGA |
| mm4_intergenic_4933406K04Rik|1700013N06Rik_chr12_106723989 |
GTTGGTGGGTACTTAGGGCCCATGACACAGCTGAACCTTTGCTGTAAGACCCCCACACATGCAGTGGTCATGTTTCTAGC TGGTGGCTAGGCTGTCTGAATCCCAACA |
| mm4_intergenic_Gm14067|Gm14069_chr2_139082994 |
TCAGAGGTGACAATGGAGTGTTACAAATATTTATTTTCTGACTGATCGTGAAGATTCTGGATGGTGGCTTGTCGGTTGAG TTTCTGAAGTTCTGTCTCAACAAGACAGGCCTATTCAAATGCTTCAGC |
| mm4_intergenic_Elovl6|Egf_chr3_129640776 |
CTGGGAGCCACTAGCCTCTAAGGGCTTTGTTTTGTTTCTGGATTGCGGTCCCACACAGATTCCCCTGACATCTGCCGGAT CTC |
| mm4_exon_Irak3_chr10_120142309 |
GAGTGACTGACTGCTGGCTTGGGGAAAAGGTGGTTCTGGTTCTGGAAGGTGGGTGGTTCTCTGTTCACCTATACCAAGAT CTCACTCGGATGATGAGAGAGAGTGAGAGACTTAAGAGAGAGACTTGTCCTGCT |
| mm4_intron_Erc2_chr14_27649363 |
CTTGCAGACTCCCTGAGGTTAAATCCACACAGGTGTACACTTTGTGTTAGTTGTGAGAGCTTTCAAACCTAGCTAGAGAA ACGAGATGTTTCTGTTTCTAGATGAAGGAGGAGAAGACAGAGGAGGACAAGCTCC |
| mm4_intergenic_4933416E14Rik|Tspan7_chrX_10427666 |
GCCCATAAAACCATAATATACTCCCTCCTATGTCCACTTTCCAGAAATAGAACCATATGAAACTCATTTTCCATTTGATC TCAAAGAATAGGTCACACAAGTGGGGACTTGGAGAACAATGGGGTCTAATAGGGGTGGG |
| mm4_intergenic_Gm5224|Gm5493_chr17_22737349 |
AGACCTATAGGAAGCAGACGGAAGTCGAAGCAGATAAAGTTCAATGTCCACCATTGAGAAAGATGACCATGAGCGGCACA GAGCACTAGTAA |
| mm4_intron_Shank2_chr7_144217935 |
CAGGCAGAAGAGGTCACCAGCACCCCCCGCACTCCCCACTGGTGTGATGGTAATGGTTATGGATAGGGGTGGTTGAGCTT TGTTTGTGCATGCCACTGAACTTGG |
| mm3_intergenic_1700018B24Rik|Gm23511_chr3_48847018 |
AAGTGAGTCACTGGAGCCTTAATAATACACTGGCTTTTTGAGCATTAATGTTCTTAAAATAGCCAGGCACTTAAAGCCCT TCCATCCAGAAACATTAGCACCTAAGCATCTTGCTGCAGGCTGAGAAAGTAGCC |
| mm4_intron_Tnfrsf19_chr14_60978551 |
TCAAAATAAGATCTCTCTGCTTTCCTTTTTCTGTCTATAGCCCTGTCTATATTTTAGAAGTTGATGTTTCTGGAAGGAGG AAAGGGAAGAGGGGGAAGTGATACGACTCTATTT |
| mm4_intergenic_Gm25705|Gm11922_chr4_31289739 |
ATCCCCTTGACCCCAAACTGCAATTCCTTCATGTTTATTTTAATTTTTAATTACTTCTCACCAACTTCCAGAGACATAAA CATCTTTTTTAAGGGAAAGCAATATATTTGATACCCGC |
| mm4_intergenic_Zswim6|Gm22118_chr13_107803951 |
GCCATTTGAAAGCCCAGACCTGAGCCCAGGTTATGGGTCTTTACATGCTGGGCGGCCTTCAACACCCCCAACCAGCATCC AGAAAGATAAGCTTGTTGCTGAAAACTGACCATCTTGTCCCTAATCAAGCACATCGA |
| mm4_intergenic_Gm13463|Lrp1b_chr2_42164111 |
TCCAGCAAATCAGTGTGGAGAGAACCCTTTCACCAACATCCACAAACATGACCACAATATTATGAGAGTTAGGCTATCCT CCACCAATTACAGTCCC |
| mm3_intergenic_Gm9081|Avpr1a_chr10_122380290 |
CCACTCTCTGCTGCCATGATGTGGGTTTTAGTAACCTCAATGACCTAATTCTTTCAAAGTTATGTTTCTGGTTGGTGGTG CTAATTATTTCACGACCTTTGTATTTTCCATCCATCCAACACCATGTGACC |
| mm4_intergenic_Efcab5|Ssh2_chr11_77215899 |
ACGTGTTCGCCTCAGGATTTTCGCCTCAGTTTTTCTCTAAGGTTGCGCGCCCCACTCATAAAATGGTTGTCTTTCTGGAG TGAGGATTAGCGGCTCTCCCACCGACCCCCACCCCCAGATCAGGACCCTCGGTTG |
| mm4_intergenic_Tmem141|Fcna_chr2_25624500 |
GCACTTCTCTGTTCAGGGCTACAGCAGGGACCGAGTTGGTGTCGAGTAGGCCTTTCCACTCATTAATGGGTTTGTTTCTG GAAGCGGGTCTTGGAAGGCTGAGCTGACTCCTTCCTGGTGCTG |
| mm4_intron_Zfat_chr15_68243306 |
ACATTCTCTGCCAGGCACAATTAGAAATGAGAAGGATCCAGGCCTCCCTCCAGAAACACAAACGTCTGTGTCGTCTGGGG CCTGGCTTTGAGGACTCCTG |
| mm4_intergenic_Nrg3|Gm10713_chr14_39901276 |
TGGATTGTACTGTCAATTGGTCACCTCCCTTCAGAACCAGAACCATGGCTGTTCTAAGCCTTTTTCAACCACAGTTTTGA TCCTTCT |
| mm4_intergenic_Mtif3|Lnx2_chr5_146968896 |
CGCTGTCCATTTGGGGTCATTGTTTAACACTCTCCCCCCTCCAGAAAAAAAACCCTGCTAAGTTCCCCAGGCAAAGAGTT TTAAAGGCTGCTTTGTTGGCAGCCCTATG |
| mm4_intron_Sulf1_chr1_12775560 |
GGCACATGCAGCAGTTTTCTTCCATGATTTTGGAAATCTTTGATTTACAGTAGCTTGGCCTTCCATCCAGAAACGTATCA AATGTGATCCTGGATACTTAATTGTGACTAAATACAATCAAGACACAGAAGCTTCACAGG |
| mm4_intron_Pcx_chr19_4591158 |
ACCTTTGCCCTGCCTCATTTGGCATTTTGTTGTAGGCACCATTTCAGCTCTATGGTTTTCTGTCTGGAAGGAGGAATGCT GAGTTCATAGATCCAGTGTTGGAGAAAACTGGAGCAGGATGAGGTGA |
| mm4_intergenic_Efcab4b|Prmt8_chr6_127670931 |
CTTTTCTCACAAGCTGGCCCCACACCTCAGGCTCATATCTTTCCCTAGGGTAAGGACAATGGTGGTGGTTATATTTGTGG ATTGGGGCATGCGGAAGAAGCACGAGAGCCACT |
| mm4_intergenic_4631405K08Rik|Plxna2_chr1_194565258 |
CAAGAGGAAGCACTGCCAGAATTATTGATCAAGATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNTGAGCAGGGCTTGTTATTCATAAGGACATCTTCCCAGGGT |
| mm4_intergenic_Ndst4|Ugt8a_chr3_125827358 |
TCAGTTCCAGGCAGGGTACTACTTCTCAGTACCCCCTGCCAGCAACATGACCATCTCTCTGCCAGCCACAAGCTCACCAC AGCTGCCTCCTGGTGCTCCCAGCTGCTGCAAGACAACCCCTGCCAGTC |
| mm4_intron_Gm5483_chr16_36185827 |
GGGAGGCAGAGAAACAGACAGTACTTATAGGAAGCATTTTCTGTATCACAGCAATAGTCCCCCCTCCAGAGAAAAAACCA TGGGGCACATATTATGGAAATCCC |
| mm4_intron_Rab31_chr17_65684069 |
ACAGCAGGCTTCTCCTTTCTTCTTTTAGAGTTATTTTTCTTGATGGTGGTGGTGCATGCCTGCTNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNAGATTAAATGCTGGGCCTCAAATATGCT |
| mm4_intron_Golga7b_chr19_42249897 |
GATGAAGTGCCGTGCTTGTGTCGGGGTGACAACACCCCATGCTCATCTTTCTGGCTGGTGGGTAGTATATATTCACTCTG CTGACTGAAGGAACTGACGA |
| mm4_intron_Rad18_chr6_112677905 |
AGCAGGTCACAAGATACCGATTAATGGCTTAGAAAGTCATCTTGGGATATCTCCTTGTATTATCCCAAATCCCCGCCCCC TAACTAGCAACATAACCATCTAAATACGATTCCCATCAACAAACTGTGGGT |
| mm4_intron_Sdk2_chr11_113844983 |
AAAGTACCCACCTTCCTGCCCAAAGGCTCACAAGATGTTGAAGGTTCTGTCTCTGGCTGGTGGGTCCAATCATTGACAGG TGATTTATTAATAAATGCTCTCTCATCAATTAATACATTGATGAATTTATGGTGCAGGGT |
| mm4_intergenic_Gm25255|Csmd1_chr8_15848596 |
ACACACAGCCTATTCACGAGATTCTACAATTTCTGCAGAGTGATTTTACATTTACAACACCAGTAACCAGAAACATAATC ATTAAAAAGAAACCTCATCTAGACAGTCGTGTGGTGAAACTGAGGC |
| mm4_exon_Lpgat1_chr1_191760054 |
CCAACAGCTGCTGGTTCTCAAGAAGCACCTTGAACATAATTACAGGAGCAGAGATCGAAAATGGATCGTTTTGTTTCCGG AAGGGGGCTTCCTCAGGAAGAGGCGAGAAACAAGCCA |
| mm4_intron_Atp6v0a1_chr11_101040348 | CCACCACCACAAACAAACAAACAACCACCACCATCAAGAAACAAAACAAAAAAACAAACCCCAAAACTGACTTACA |
| mm4_intergenic_Fbxo15|Gm25453_chr18_85962005 |
TCCACCCAACATGTGAGGTTTATTTTTTTCATGGCACAGTTGCTTTTTCAATTTGAAATTGCATAATCTTTCAAAAAAAA AACCCATCACCCAGAAACATAAAAATCCGTGTTTAAGTACAGGAGTCA |
| mm4_intergenic_Fam180a|Mtpn_chr6_35480753 |
ACAAAACACCTAAGGCGAGGTCATTTATCAAGAATGTAGGTTTAGTATGCTTATGTTTCTGGGGGTTGGTGGTGGAGTAA ATAGAATGGGGAGCAGAATGGTTATCACTTTGTGAGCTCCATGGCT |
| mm4_intergenic_Mut|Gm6771_chr17_41225277 |
ACAGCAGATTAACAGCCCCATCTGATACAACTATGAAACACAATGTATGTATCTTAAGTCACAGAAATATTGTTATGTTT ATGGTAGGTGGAAATTCATCCTATACAGGTCCTAACTAAGGTCGCATAGGGCAAC |
| mm4_intron_Zfp318_chr17_46389028 | AGGTTGTAGCGCCATTAGCATATTCGTTATGTTTCCTGATGGTGGGTCTAGTCTTCGGCTAATTGAATAGACCA |
| mm4_exon_Mpp6_chr6_50110998 |
GTGGATTGGTTGGGGTGTCTTTGGTTATTTTTCTTGCTGGGGGGACTCTTTTTTTTTTTTTTTAACACTTTATTGGGAGT TTATTCTCAAGGTACCAGTTCCTGGGATCGCAGCTCGAGAAAACATTCA |
| mm4_intron_Slc26a7_chr4_14601018 |
TGGCACAGGGTCTTAAGTATGAGACAAGTGTTATGACCATATCTGTGATTCTGGAGGATTCCAACTTGAACTTTCAGTAG CTCCTTGTCCTCCAACCAGAAAAATAAAAATATCCCAGCCAGGAGACTGCATCTT |
| mm4_intron_Calcrl_chr2_84373421 |
TTCACGCCTTCTTCCGACTCTGCTGAGATGAGAGCCTGAGGGAATAAAACAACAACGGCTTTAGAATGGTGGAATGGTTA GATTTCTTGCTGGTGGAAAACAGCAAGAGCAGAGGTGC |
| mm4_intergenic_Gm22254|Gm8993_chr6_74803402 |
GCCCTACAGGAAACATTGCCATTATCTGTATTTCTTTTTATATTGTATATGTATGCCTGTGGACATGTTTATGTGTATGG GTGGTGGTGGTGGTAGATATATGTATATCAATACAAGTGCCAGCA |
| mm4_intron_Pip5k1b_chr19_24344215 | CTTACCCACCCACCATCACCACCACCACCAAGAACCACAACCATTACAAAACCCCAACCCCAAATACCA |
| mm4_intergenic_Rbms3|Gm26614_chr9_117824180 |
CGGCTTGAACAGAATTCGGTTGGCTTTTTGAGTAGGAGATGTCTCTCTATTCAAAAGACTATGCTACTACACCACCAACC ACCACCATAACCATAACCAAGACCATGGCTATCATTCATCCTGTATGGCTACTCCCTCCT |
| mm4_intron_Tenm4_chr7_96844135 |
CCTGGACATCCCCTGTTGAGTAGTTTCCAGTGTCAGTCCCCAATAAAAAAACATAACCATTTCTGAATTCTCACTGTACA GAAAGCTCACTCCTTCTCAGAGATTCAACGCCTGTCTCCTGTC |
| mm4_intron_Mapre2_chr18_23872163 |
AGGAGAGGGAGGAACAGTCCCTCAGAGTAAGGAAGAGGTCAATGGCTTTGTGTCGGGATGGGGGATGCGTGTGCCCATAT ACTTAACAC |
| mm4_intron_Gpd2_chr2_57345502 |
GCAACTTGCTGGGCCTTTCTTGCCTCCAGCCCAAAACATAACCACACCTTGTATACTATAACCCTCAGCCTTTTCCTCCC CAC |
| mm4_intron_Gm5432_chr12_15861906 |
GGAGTCAGGCAACAGCAGATTAAAATTTCCATTTTGTGCTCTTGTGCTATAATTTTAAACCTAATATACTCCAAGAAAAG TCCTACTGGAAGGTTATGTTTCTGCAAAGAGGTAGATCCCTTTTCCCTATCCTTGGCC |
| mm4_intron_Fyn_chr10_39470707 |
GTGCATACACAGCATACGTGTTGACGCGGTCCCACATACAAAAACATAACCTTTTTTTTGGTACACAACACAAGAAAGAA AAAAATCCAGCCACCCACTCCAGTGTGCTTCAGTCCTGCTTTGGT |
| mm4_intergenic_Pitx1|H2afy_chr13_56015700 |
AGGAGAATTGAGAGAGACTGTCATATACAGGAAAATGGGTATGTGTGTGTATGGGGGGTGATTACCACTGAATGCAGCTA AAACAACCAAGTTCAAATCCAGCTCAGTGTAAACCAGAC |
| mm4_intergenic_Mtpn|Gm23273_chr6_35785808 |
CCAGATGACAAGGGAGCCTCTTGTGATTGGTGAGTTTGGCTCACTTTTAGAGAAAAAAAATTTTTTTTTGGTACAAATTA TGGTTTTGTTTCTGTTTTGTGGGAGTTACTTTCTTTCTGAAATTGTGTGTATTTTCACCC |
| mm4_intergenic_Dscaml1|Cep164_chr9_45753697 |
CCAAGAAAACCGGGAGTTGCTTCAATTTGCAGATGCTTATGTGCTAATACCTTTTTCTATGAAAAAAGACCCAGCGCCGT GTGCAATAAAGGTTATGTTTCTACGTGGTGGCTTTTTTCCCATCTGGCAAGGGC |
| mm4_intergenic_Cyp2c37|Cyp2c54_chr19_40013158 |
ACAGATTTAAAATCAGACTTGCCATATCTCTATTACTATTACCAACTGACCATCATACAGAAACAAAACCAGACAAAAGA ACATTCAATCAAGATACTTTGAACTCAATATCAAAGCCAGCAACAAAGGT |
| mm4_intergenic_4931417E11Rik|Gm26179_chr6_73631806 |
GCTTAAAGGAGGAGAGAGCTGAAAATATTTTAACAAAGAAGACTACAAATTAAGAGATATTAACAGAGGAGTGGTTTTGT TTCTCTATGGAGGTGTCAGAGCTTCGGGACAGTT |
| mm4_intergenic_1700112E06Rik|Gm10248_chr14_22915664 |
AGAGCACTGGCAAACCTTGAACAAGGTGCTAGAGTGGTGATGTTTCGGCATGGGGGCACATGGAAGCTGTGTGCATCTCA GCTCTACTTGAGCCAAGGAAGCGTTAGG |