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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313860_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313860_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intron_Gstcd_chr3_133084217_F | Primer3: not found at this Tm | N.d. | 0.67 |
| mm4_intron_Gstcd_chr3_133084217_R | Primer3: not found at this Tm | N.d. | 0.67 |
| mm4_intergenic_Igkv9-123|Igkv1-122_chr6_67998285_F | TCGTCGGCAGCGTCAACAAGGTTTCTTTCATTTGTGTTT | 57.0 | 0.56 |
| mm4_intergenic_Igkv9-123|Igkv1-122_chr6_67998285_R | GTCTCGTGGGCTCGGTCACATCCAAAACCTAACAGTTTGT | 59.3 | 0.56 |
| mm4_intergenic_Foxf2|Gm25186_chr13_31638346_F | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intergenic_Foxf2|Gm25186_chr13_31638346_R | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intergenic_Xkr4|Gm1992_chr1_3454982_F | TCGTCGGCAGCGTCCCCACATTGGTGATGTCCCA | 59.9 | 0.48 |
| mm4_intergenic_Xkr4|Gm1992_chr1_3454982_R | GTCTCGTGGGCTCGGCCACTGAAAGGAGACGTGGT | 59.6 | 0.48 |
| mm4_intergenic_Nek7|Lhx9_chr1_138796465_F | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_Nek7|Lhx9_chr1_138796465_R | Primer3: not found at this Tm | N.d. | 0.46 |
| mm3_intergenic_Gm5468|Myo10_chr15_25457149_F | Primer3: not found at this Tm | N.d. | 0.45 |
| mm3_intergenic_Gm5468|Myo10_chr15_25457149_R | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intergenic_Scn9a|Scn7a_chr2_66670497_F | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intergenic_Scn9a|Scn7a_chr2_66670497_R | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intergenic_mmu-mir-6342|Gm23771_chr1_29914213_F | TCGTCGGCAGCGTCTGTTCAGTCTGCAGATTGAGGA | 59.3 | 0.44 |
| mm4_intergenic_mmu-mir-6342|Gm23771_chr1_29914213_R | GTCTCGTGGGCTCGGAAACAGTTGAGGTACCCAACA | 57.3 | 0.44 |
| mm4_intergenic_Slitrk5|Gm22764_chr14_111725404_F | Primer3: not found at this Tm | N.d. | 0.42 |
| mm4_intergenic_Slitrk5|Gm22764_chr14_111725404_R | Primer3: not found at this Tm | N.d. | 0.42 |
| mm3_intergenic_Prdm4|Ascl4_chr10_85917791_F | TCGTCGGCAGCGTCGGCAATATCCCATACCCCACA | 59.5 | 0.38 |
| mm3_intergenic_Prdm4|Ascl4_chr10_85917791_R | GTCTCGTGGGCTCGGACAGATCATTAACAAAGTTGCAAGG | 58.5 | 0.38 |
| mm4_intron_Rapgef5_chr12_117578034_F | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intron_Rapgef5_chr12_117578034_R | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intron_Pde4d_chr13_109570572_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intron_Pde4d_chr13_109570572_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Mrgprb2|Mrgprb3_chr7_48591242_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Mrgprb2|Mrgprb3_chr7_48591242_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intron_Cnga2_chrX_71993671_F | TCGTCGGCAGCGTCAGGATGGATGGGGAAGAGGA | 59.3 | 0.36 |
| mm4_intron_Cnga2_chrX_71993671_R | GTCTCGTGGGCTCGGGCTCATCTTTCCTCACAAGCC | 59.2 | 0.36 |
| mm3_intergenic_Gm26076|Gm25519_chr3_111172871_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm3_intergenic_Gm26076|Gm25519_chr3_111172871_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Zfyve16|Spz1_chr13_92546155_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Zfyve16|Spz1_chr13_92546155_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intron_Nrxn3_chr12_89135270_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intron_Nrxn3_chr12_89135270_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Agmo|Dgkb_chr12_37675848_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Agmo|Dgkb_chr12_37675848_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Gm4654|Scel_chr14_103392070_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Gm4654|Scel_chr14_103392070_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm3_intergenic_1810046K07Rik|Gm7293_chr9_51439352_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intergenic_1810046K07Rik|Gm7293_chr9_51439352_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intron_Crb1_chr1_139324977_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Crb1_chr1_139324977_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Gm23424|Gm6756_chr18_36877907_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Gm23424|Gm6756_chr18_36877907_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Gm833|Gm25779_chr4_152878411_F | TCGTCGGCAGCGTCACACACACAAAGCTCCCTCA | 59.4 | 0.28 |
| mm4_intergenic_Gm833|Gm25779_chr4_152878411_R | GTCTCGTGGGCTCGGCGGAAGTGTCTCTGGAGTCC | 59.4 | 0.28 |
| mm2_intergenic_Gm13468|Gm13481_chr2_48004953_F | TCGTCGGCAGCGTCGCGGGACAAGAGGTTAAAATGG | 59.8 | 0.28 |
| mm2_intergenic_Gm13468|Gm13481_chr2_48004953_R | GTCTCGTGGGCTCGGTCACAGGGATTGCATCAGTT | 57.1 | 0.28 |
| mm4_intergenic_Gm23558|Galc_chr12_97974206_F | TCGTCGGCAGCGTCACGAATGCAACGGTAGTTTGC | 60.0 | 0.28 |
| mm4_intergenic_Gm23558|Galc_chr12_97974206_R | GTCTCGTGGGCTCGGAGGACACAAATGCTCCCCAG | 59.9 | 0.28 |
| mm4_intergenic_Psg29|Gm24520_chr7_17528519_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Psg29|Gm24520_chr7_17528519_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm13577|Gm13576_chr2_64498523_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm13577|Gm13576_chr2_64498523_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm22939|Cntnap2_chr6_45037011_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm22939|Cntnap2_chr6_45037011_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Lzts3|Ddrgk1_chr2_130651698_F | TCGTCGGCAGCGTCAGATTTGCTTGAGTTACATGAGAG | 57.0 | 0.25 |
| mm4_intergenic_Lzts3|Ddrgk1_chr2_130651698_R | GTCTCGTGGGCTCGGCTCAGGGCTGTGGATATAGCA | 59.0 | 0.25 |
| mm4_intron_Tmem163_chr1_127596556_F | TCGTCGGCAGCGTCCATCCACCGGTTCAGATGCT | 60.1 | 0.24 |
| mm4_intron_Tmem163_chr1_127596556_R | GTCTCGTGGGCTCGGTGTAGCACATTCCATCTTAGCT | 57.2 | 0.24 |
| mm4_intron_Kcnmb4_chr10_116446942_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Kcnmb4_chr10_116446942_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm6806|Gm22332_chrX_68545508_F | TCGTCGGCAGCGTCACTTTAATCCCTTCTGAGAGGAGAC | 59.5 | 0.23 |
| mm4_intergenic_Gm6806|Gm22332_chrX_68545508_R | GTCTCGTGGGCTCGGACAGGTTGCTTACAAGATTTCATGT | 59.4 | 0.23 |
| mm4_intergenic_A530020G20Rik|A730020M07Rik_chr3_121624291_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_A530020G20Rik|A730020M07Rik_chr3_121624291_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm22483|Prelid2_chr18_41099431_F | TCGTCGGCAGCGTCTCCCATAGGAATTCAAGACAAGCT | 59.7 | 0.22 |
| mm4_intergenic_Gm22483|Prelid2_chr18_41099431_R | GTCTCGTGGGCTCGGTGCTGAGTATCTACTGCCTCTCT | 60.1 | 0.22 |
| mm4_intergenic_4833403I15Rik|Arl14epl_chr18_46916547_F | TCGTCGGCAGCGTCCTGATGGGCTGATTGATGAGGA | 59.8 | 0.22 |
| mm4_intergenic_4833403I15Rik|Arl14epl_chr18_46916547_R | GTCTCGTGGGCTCGGACCTACAAGCACCACACACT | 59.1 | 0.22 |
| mm4_intron_Arhgap29_chr3_122001886_F | TCGTCGGCAGCGTCGCTCTTTCTCACGTGGCTCT | 60.0 | 0.21 |
| mm4_intron_Arhgap29_chr3_122001886_R | GTCTCGTGGGCTCGGTGCTATCCTATCCCCTGCTT | 57.5 | 0.21 |
| mm4_intergenic_Zfp846|5730577I03Rik_chr9_20597947_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Zfp846|5730577I03Rik_chr9_20597947_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Pax7_chr4_139827794_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Pax7_chr4_139827794_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Egfem1_chr3_29355099_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Egfem1_chr3_29355099_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Arhgap15_chr2_44384697_F | TCGTCGGCAGCGTCTCTCTGGTAACTCACTGATACTCT | 57.9 | 0.20 |
| mm4_intron_Arhgap15_chr2_44384697_R | GTCTCGTGGGCTCGGTCCAAGACATCCCGCTTCAC | 60.0 | 0.20 |
| mm4_intergenic_Auts2|Gm25722_chr5_132784948_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Auts2|Gm25722_chr5_132784948_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_MDGA2/Mdga2_chr12_66534565_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_MDGA2/Mdga2_chr12_66534565_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Wdr49|Pdcd10_chr3_75508738_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Wdr49|Pdcd10_chr3_75508738_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gli3|Inhba_chr13_15767252_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gli3|Inhba_chr13_15767252_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Cyp4f14_chr17_32908252_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Cyp4f14_chr17_32908252_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Prkg1_chr19_30857736_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Prkg1_chr19_30857736_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Dclk3_chr9_111451032_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Dclk3_chr9_111451032_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm8609|Gm22543_chr16_40102236_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm8609|Gm22543_chr16_40102236_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Eya1|Msc_chr1_14602398_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Eya1|Msc_chr1_14602398_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Myc|Pvt1/PVT1_1_chr15_61991568_F | TCGTCGGCAGCGTCGACACACGCTCATCAATGGC | 59.9 | 0.17 |
| mm4_intergenic_Myc|Pvt1/PVT1_1_chr15_61991568_R | GTCTCGTGGGCTCGGGGTACCTTTCTCCCTGGACT | 58.0 | 0.17 |
| mm4_intron_Slco1a6_chr6_142088626_F | TCGTCGGCAGCGTCACATCCCCTGCCATAAACCC | 59.7 | 0.17 |
| mm4_intron_Slco1a6_chr6_142088626_R | GTCTCGTGGGCTCGGTTCAGCCTAAAGGAATTTGCAC | 57.4 | 0.17 |
| mm4_intergenic_Gm14569|Pgrmc1_chrX_36509801_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm14569|Pgrmc1_chrX_36509801_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Utp20|Slc5a8_chr10_88850381_F | TCGTCGGCAGCGTCTTTACCGTAAGACGCAGGCG | 60.7 | 0.16 |
| mm4_intergenic_Utp20|Slc5a8_chr10_88850381_R | GTCTCGTGGGCTCGGAAGCTCAGCCAGTCTTGCTT | 59.8 | 0.16 |
| mm4_intergenic_Gm5899|Gm23884_chr7_94543671_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm5899|Gm23884_chr7_94543671_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Cluh_chr11_74651415_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Cluh_chr11_74651415_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Dscam_chr16_96748749_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Dscam_chr16_96748749_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Dus1l|Fasn_chr11_120802190_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Dus1l|Fasn_chr11_120802190_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Cdh6|Gm9630_chr15_13521559_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Cdh6|Gm9630_chr15_13521559_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm23131|Lphn2_chr3_148602649_F | TCGTCGGCAGCGTCCCCAACCCAAACACAAGCAG | 59.8 | 0.15 |
| mm4_intergenic_Gm23131|Lphn2_chr3_148602649_R | GTCTCGTGGGCTCGGGCAACTCACAGTGACTAGGTCT | 59.7 | 0.15 |
| mm4_intergenic_Gm16542|Fhit_chr14_10963152_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm16542|Fhit_chr14_10963152_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm24250|Nlgn1_chr3_25849721_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm24250|Nlgn1_chr3_25849721_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Mageb1|Gm4911_chrX_92040798_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Mageb1|Gm4911_chrX_92040798_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Gm4884|Gm2128_chr7_41097014_F | TCGTCGGCAGCGTCAGAGGTGACCCATTGACAACA | 59.2 | 0.14 |
| mm3_intergenic_Gm4884|Gm2128_chr7_41097014_R | GTCTCGTGGGCTCGGCTTCCAGCACTGTATCTCACA | 57.4 | 0.14 |
| mm4_intergenic_Ralgps2|Tex35_chr1_157041581_F | TCGTCGGCAGCGTCTGGAGAGGCGGTGAATTCAG | 59.7 | 0.14 |
| mm4_intergenic_Ralgps2|Tex35_chr1_157041581_R | GTCTCGTGGGCTCGGGGCTTGGGAAAGGAGGAGAA | 59.3 | 0.14 |
| mm4_intron_Ksr2_chr5_117611521_F | TCGTCGGCAGCGTCGGCTCCCCACAAAGGACTTT | 60.1 | 0.14 |
| mm4_intron_Ksr2_chr5_117611521_R | GTCTCGTGGGCTCGGGGTTCCTCTTGCCTCTGTCC | 60.0 | 0.14 |
| mm4_intergenic_Gm4922|Perp_chr10_18842007_F | TCGTCGGCAGCGTCCCTCCCACAGGTTGTGTAGAC | 59.9 | 0.14 |
| mm4_intergenic_Gm4922|Perp_chr10_18842007_R | GTCTCGTGGGCTCGGTGACACAACAGCCACTTCCG | 60.8 | 0.14 |
| mm4_intergenic_Gm23891|1700018B24Rik_chr3_48588075_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm23891|1700018B24Rik_chr3_48588075_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_AV039307|Ubr1/AV039307_chr2_120856549_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_AV039307|Ubr1/AV039307_chr2_120856549_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Rps3a1|Gm23025_chr3_86171509_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Rps3a1|Gm23025_chr3_86171509_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_3100003L05Rik|Gm21957_chr7_125057585_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_3100003L05Rik|Gm21957_chr7_125057585_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Galnt18_chr7_111706832_F | TCGTCGGCAGCGTCCCTAATTAATAGGGTCAGTGTCCT | 57.2 | 0.12 |
| mm4_intron_Galnt18_chr7_111706832_R | GTCTCGTGGGCTCGGTAAAGAGGCCAGAGCACGTG | 60.0 | 0.12 |
| mm4_exon_Itpr1_chr6_108550912_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Itpr1_chr6_108550912_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Spink12|Gm10267_chr18_44145779_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Spink12|Gm10267_chr18_44145779_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Cdhr3|F730043M19Rik/Gm16267_chr12_33098195_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Cdhr3|F730043M19Rik/Gm16267_chr12_33098195_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm14672|Gm14668_chrX_65567409_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm14672|Gm14668_chrX_65567409_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm26063|Gm23562_chr15_46327149_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm26063|Gm23562_chr15_46327149_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Kctd16_chr18_40329640_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Kctd16_chr18_40329640_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm22782|Rpl10l_chr12_65711813_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm22782|Rpl10l_chr12_65711813_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intron_Erbb4_chr1_68264801_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intron_Erbb4_chr1_68264801_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Chrne|Gm12315_chr11_70620575_F | TCGTCGGCAGCGTCAGCCCTTTATGCGTTACACCT | 59.7 | 0.11 |
| mm3_intergenic_Chrne|Gm12315_chr11_70620575_R | GTCTCGTGGGCTCGGAGTGACCCTCCGCTACAGAT | 60.0 | 0.11 |
| mm4_intergenic_Fbxo15|Gm25453_chr18_85993773_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Fbxo15|Gm25453_chr18_85993773_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Slc13a4_chr6_35286374_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Slc13a4_chr6_35286374_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_4933406K04Rik_chr12_106700478_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_4933406K04Rik_chr12_106700478_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_intergenic_Fam173b|Tas2r119_chr15_32119260_F | TCGTCGGCAGCGTCGAGCCGCTGTCTGAGAAGTT | 60.0 | 0.10 |
| mm3_intergenic_Fam173b|Tas2r119_chr15_32119260_R | GTCTCGTGGGCTCGGGCTCCACCATGCTTCAGAGT | 60.0 | 0.10 |
| mm4_intergenic_Gm24681|Gm23591_chr16_68628019_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm24681|Gm23591_chr16_68628019_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Plp1|Rab9b_chrX_136843601_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Plp1|Rab9b_chrX_136843601_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Triml1|Triml2_chr8_43147636_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Triml1|Triml2_chr8_43147636_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Fbxw11|Gm8192_chr11_32753910_F | TCGTCGGCAGCGTCGGTGCACACCCTATGACTTCA | 59.9 | 0.09 |
| mm4_intergenic_Fbxw11|Gm8192_chr11_32753910_R | GTCTCGTGGGCTCGGGCCTTGTGCTCCACCTCTAA | 59.6 | 0.09 |
| mm4_intergenic_Gm22223|Gm22715_chr8_102396494_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm22223|Gm22715_chr8_102396494_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Adra2a|Gpam_chr19_54412906_F | TCGTCGGCAGCGTCCACTTGGCCCTCGATGAAGT | 60.0 | 0.09 |
| mm3_intergenic_Adra2a|Gpam_chr19_54412906_R | GTCTCGTGGGCTCGGTCACCCTAGCTTAGCCACCT | 59.9 | 0.09 |
| mm4_intergenic_Gm26871|Dpyd_chr3_118541161_F | TCGTCGGCAGCGTCTCAGTGTTGGGATGGATGGT | 58.6 | 0.09 |
| mm4_intergenic_Gm26871|Dpyd_chr3_118541161_R | GTCTCGTGGGCTCGGAGTCTGTTTTGAAGCTTCCTCCA | 60.1 | 0.09 |
| mm4_intergenic_Gm13723|Olfr1097_chr2_86881970_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm13723|Olfr1097_chr2_86881970_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Dok5|Gm14263_chr2_170912170_F | TCGTCGGCAGCGTCTCTCAAAGTCAAAATGAAAGTTGGA | 57.5 | 0.09 |
| mm4_intergenic_Dok5|Gm14263_chr2_170912170_R | GTCTCGTGGGCTCGGAGAGCCCTGAACCCAATGTG | 59.9 | 0.09 |
| mm4_intergenic_Lrp12|9330182O14Rik_chr15_40083444_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Lrp12|9330182O14Rik_chr15_40083444_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Col23a1_chr11_51527207_F | TCGTCGGCAGCGTCGGGATGCAAAACGGGAAGAC | 59.4 | 0.08 |
| mm4_intron_Col23a1_chr11_51527207_R | GTCTCGTGGGCTCGGCTACCCCTTCAAGCCCCTTG | 60.0 | 0.08 |
| mm4_intergenic_Naa15|Rab33b_chr3_51479683_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Naa15|Rab33b_chr3_51479683_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_6330403L08Rik/Pdgfa|Prkar1b_chr5_139011247_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_6330403L08Rik/Pdgfa|Prkar1b_chr5_139011247_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Hdac11_chr6_91174675_F | TCGTCGGCAGCGTCTCCAGGTTGTTGCTGTGTGT | 60.0 | 0.08 |
| mm4_exon_Hdac11_chr6_91174675_R | GTCTCGTGGGCTCGGACAACCACTCATCTTGGGCA | 59.5 | 0.08 |
| mm4_intergenic_Gm21070|Jrkl_chr9_13198779_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm21070|Jrkl_chr9_13198779_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm10797|Zfp365_chr10_67770411_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm10797|Zfp365_chr10_67770411_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Pabpc2|Yipf5_chr18_39802872_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Pabpc2|Yipf5_chr18_39802872_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Shroom4_chrX_6405666_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Shroom4_chrX_6405666_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_D3Ertd751e|Gm25714_chr3_42129719_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_D3Ertd751e|Gm25714_chr3_42129719_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Lyzl6|Rprml_chr11_103644198_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Lyzl6|Rprml_chr11_103644198_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Rsrc1_chr3_67109645_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Rsrc1_chr3_67109645_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Park2_chr17_11267881_F | TCGTCGGCAGCGTCATTGCAGCAGGAAGGAGCAT | 60.0 | 0.07 |
| mm4_intron_Park2_chr17_11267881_R | GTCTCGTGGGCTCGGGAACTACAGACCACCCAGCC | 60.0 | 0.07 |
| mm4_intergenic_Acer3|Tsku_chr7_98321413_F | TCGTCGGCAGCGTCGAGCAAAGTGGGACAGAGTGA | 59.9 | 0.07 |
| mm4_intergenic_Acer3|Tsku_chr7_98321413_R | GTCTCGTGGGCTCGGCACCACAGCACTAACTCCCA | 59.6 | 0.07 |
| mm4_intron_Gbp2b_chr3_142595635_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Gbp2b_chr3_142595635_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm22508|Ccdc68_chr18_69788341_F | TCGTCGGCAGCGTCTGAAAGCTGGAGGTGTTCAAGT | 60.0 | 0.06 |
| mm4_intergenic_Gm22508|Ccdc68_chr18_69788341_R | GTCTCGTGGGCTCGGTCCTTGGCTTGACTACAGCTG | 59.9 | 0.06 |
| mm4_intergenic_Slfn1|Slfn4_chr11_83162892_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slfn1|Slfn4_chr11_83162892_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slfn1|Slfn4_chr11_83151222_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slfn1|Slfn4_chr11_83151222_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slfn1|Slfn4_chr11_83139535_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slfn1|Slfn4_chr11_83139535_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slfn1|Slfn4_chr11_83127851_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slfn1|Slfn4_chr11_83127851_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Hace1_chr10_45655127_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Hace1_chr10_45655127_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm13211|Gm13254_chr2_7907356_F | TCGTCGGCAGCGTCCATCAGGGAGCTCTCTGCAC | 60.1 | 0.06 |
| mm4_intergenic_Gm13211|Gm13254_chr2_7907356_R | GTCTCGTGGGCTCGGACCAAGCAAGTACTTTACAGACT | 57.7 | 0.06 |
| mm4_intergenic_Gm12183|Gnb2l1/Gm25296/Snord96a/Snord95_chr11_48776518_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm12183|Gnb2l1/Gm25296/Snord96a/Snord95_chr11_48776518_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm17566|Gm23153_chr1_190469619_F | TCGTCGGCAGCGTCTCCCTAGCAGTTGTGAAAGCT | 59.3 | 0.06 |
| mm4_intergenic_Gm17566|Gm23153_chr1_190469619_R | GTCTCGTGGGCTCGGACGATTTCTGATGGTGGGGT | 59.0 | 0.06 |
| mm4_intron_Slc44a3_chr3_121523278_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Slc44a3_chr3_121523278_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_3110039M20Rik|Gm9804_chr12_49394183_F | TCGTCGGCAGCGTCACTCGAAATTATGCCAAGGGTC | 58.7 | 0.06 |
| mm3_intergenic_3110039M20Rik|Gm9804_chr12_49394183_R | GTCTCGTGGGCTCGGTGCACACTAATAAAACATATGTGCA | 57.8 | 0.06 |
| mm3_intergenic_Gm25384|Cxcr4_chr1_128515647_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Gm25384|Cxcr4_chr1_128515647_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rbm34|Gm22730_chr8_126998393_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rbm34|Gm22730_chr8_126998393_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Nek10|Lrrc3b_chr14_15308540_F | TCGTCGGCAGCGTCTGCCCTCAGAACATTCACTGG | 60.2 | 0.06 |
| mm4_intergenic_Nek10|Lrrc3b_chr14_15308540_R | GTCTCGTGGGCTCGGCAGGCTTCTCGTTCCCCAAA | 60.2 | 0.06 |
| mm4_intergenic_Rock1|Greb1l_chr18_10317053_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rock1|Greb1l_chr18_10317053_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm25178|Eefsec_chr6_88408985_F | TCGTCGGCAGCGTCATGTCAAAGGCTTGCTTGGC | 59.6 | 0.05 |
| mm4_intergenic_Gm25178|Eefsec_chr6_88408985_R | GTCTCGTGGGCTCGGCACTCCTGCTCGTGGAAACT | 59.9 | 0.05 |
| mm4_intergenic_Gprin3|Gm22622_chr6_59685958_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gprin3|Gm22622_chr6_59685958_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Psd4_chr2_24394189_F | TCGTCGGCAGCGTCACCACCTCAGACCCATGGAA | 60.4 | 0.05 |
| mm4_exon_Psd4_chr2_24394189_R | GTCTCGTGGGCTCGGGTTCAGAAGGGCCTGGATGG | 60.3 | 0.05 |
| mm4_intergenic_4933434I20Rik|Clgn_chr8_83387024_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_4933434I20Rik|Clgn_chr8_83387024_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Polr3b_chr10_84652297_F | TCGTCGGCAGCGTCTGTAGCTCTTGTCATAGCAGTCT | 58.9 | 0.05 |
| mm4_intron_Polr3b_chr10_84652297_R | GTCTCGTGGGCTCGGAGCAGCCATCAACTCTTCACT | 59.6 | 0.05 |
| mm4_intergenic_Gm26235|Gm25392_chr18_19395431_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm26235|Gm25392_chr18_19395431_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Dpy19l2_chr9_24692999_F | TCGTCGGCAGCGTCAGCTATTCATCTGGGCTAACAG | 57.6 | 0.04 |
| mm4_intron_Dpy19l2_chr9_24692999_R | GTCTCGTGGGCTCGGGAGCCCAGCATATCCCAGTT | 59.5 | 0.04 |
| mm4_intergenic_Gm12384|Gm12386_chr4_39824581_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm12384|Gm12386_chr4_39824581_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Mageb18|Gm14777_chrX_92278452_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Mageb18|Gm14777_chrX_92278452_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Opcml_chr9_28743757_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Opcml_chr9_28743757_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm2_intergenic_Plcl1|Hsfy2_chr1_56483952_F | TCGTCGGCAGCGTCTGGCCTCCAACACATTGACT | 59.5 | 0.04 |
| mm2_intergenic_Plcl1|Hsfy2_chr1_56483952_R | GTCTCGTGGGCTCGGCTTGTCTGTCTGGGTGCAGA | 59.6 | 0.04 |
| mm2_intron_Rapgef4_chr2_72032316_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm2_intron_Rapgef4_chr2_72032316_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Csmd1_chr8_16469412_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Csmd1_chr8_16469412_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Crp|Gm24817_chr1_172780096_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Crp|Gm24817_chr1_172780096_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25619|Cfhr2_chr1_139808852_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25619|Cfhr2_chr1_139808852_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Siglec1|Hspa12b_chr2_131106107_F | TCGTCGGCAGCGTCGGTCTCTCTTCAGCACTCGG | 59.8 | 0.03 |
| mm4_intergenic_Siglec1|Hspa12b_chr2_131106107_R | GTCTCGTGGGCTCGGGTCTGAGTGAGTCTGCAGGG | 59.7 | 0.03 |
| mm4_intergenic_4930467D21Rik|Antxr2_chr5_97823010_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_4930467D21Rik|Antxr2_chr5_97823010_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Kdm5b_chr1_134580990_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Kdm5b_chr1_134580990_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm23708|G6pd2_chr5_61395920_F | TCGTCGGCAGCGTCTCAGGAGAAAGCACCGATTGT | 59.6 | 0.03 |
| mm4_intergenic_Gm23708|G6pd2_chr5_61395920_R | GTCTCGTGGGCTCGGTTCAAGCCCATCCTCATCCA | 58.7 | 0.03 |
| mm4_intergenic_Erbb4|Gm16076_chr1_68777500_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Erbb4|Gm16076_chr1_68777500_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Zfp619|Gm26526/Gm2058_chr7_39582328_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Zfp619|Gm26526/Gm2058_chr7_39582328_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Dmd_chrX_84776916_F | TCGTCGGCAGCGTCAGTGCTTTAATGCTATGCAACTCT | 59.0 | 0.02 |
| mm3_intron_Dmd_chrX_84776916_R | GTCTCGTGGGCTCGGGAGCATGGACACACAACACAC | 60.0 | 0.02 |
| mm4_intergenic_Apoo-ps|Zswim6_chr13_107503190_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Apoo-ps|Zswim6_chr13_107503190_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Cenpf_chr1_189669543_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Cenpf_chr1_189669543_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Fstl5_chr3_76594069_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Fstl5_chr3_76594069_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Mir3964|Gm23033_chr15_29727961_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Mir3964|Gm23033_chr15_29727961_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25292|Gm26667_chr16_84680619_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25292|Gm26667_chr16_84680619_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25258|Hao1_chr2_134456708_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25258|Hao1_chr2_134456708_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm20515|Sox2ot_chr3_34463244_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm20515|Sox2ot_chr3_34463244_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Helq_chr5_100785666_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Helq_chr5_100785666_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6317|Gm25383_chr13_78851570_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6317|Gm25383_chr13_78851570_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6098|Zbbx_chr3_74483457_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6098|Zbbx_chr3_74483457_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Megf11_chr9_64570113_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Megf11_chr9_64570113_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Xrra1_chr7_99886621_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Xrra1_chr7_99886621_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Zfp606|2900092C05Rik_chr7_12505163_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Zfp606|2900092C05Rik_chr7_12505163_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cacna1c_chr6_118601729_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cacna1c_chr6_118601729_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intergenic_Cryge|Crygd_chr1_65053553_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intergenic_Cryge|Crygd_chr1_65053553_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Arl8b|Edem1_chr6_108825761_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Arl8b|Edem1_chr6_108825761_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23061|Ostf1_chr19_18454267_F | TCGTCGGCAGCGTCCCATGTTTTCCTTCTGTTCTGTGT | 59.6 | 0.01 |
| mm4_intergenic_Gm23061|Ostf1_chr19_18454267_R | GTCTCGTGGGCTCGGAAAAGTGTTGGCCTGCAAGG | 59.5 | 0.01 |
| mm4_intergenic_Gm22527|Rnf144a_chr12_25934937_F | TCGTCGGCAGCGTCTTTCAAACTGGTGGCCCACA | 60.3 | 0.01 |
| mm4_intergenic_Gm22527|Rnf144a_chr12_25934937_R | GTCTCGTGGGCTCGGCTGGAGTTGGCAGGTCTGAC | 60.3 | 0.01 |
| mm4_intergenic_Gm16194|Rab44_chr17_29134891_F | TCGTCGGCAGCGTCAAGTCTCTGGGTGTGTTGCC | 60.1 | 0.01 |
| mm4_intergenic_Gm16194|Rab44_chr17_29134891_R | GTCTCGTGGGCTCGGTTATGGTGGTGCTGGGAACG | 60.3 | 0.01 |
| mm4_intergenic_Gm15216|Mospd2_chrX_164907245_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm15216|Mospd2_chrX_164907245_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ttll7|Gm23131_chr3_148188530_F | TCGTCGGCAGCGTCTTCCCAAAGACTCACCCGTT | 59.1 | 0.01 |
| mm4_intergenic_Ttll7|Gm23131_chr3_148188530_R | GTCTCGTGGGCTCGGTGACTCTGATGTTTATTTGCTCCA | 58.4 | 0.01 |
| mm4_intron_Gtf2h3_chr5_124591418_F | TCGTCGGCAGCGTCGGTGATCATTGTCATTCTTGCACA | 60.0 | 0.01 |
| mm4_intron_Gtf2h3_chr5_124591418_R | GTCTCGTGGGCTCGGCTGCCCAGGACCCTAAACAG | 60.0 | 0.01 |
| mm3_intergenic_Alcam|Gm25723_chr16_52596588_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Alcam|Gm25723_chr16_52596588_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Igf2r_chr17_12696714_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Igf2r_chr17_12696714_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Oxnad1_chr14_32100019_F | TCGTCGGCAGCGTCCGAAGTGCCTGATGTAACACC | 59.2 | 0.01 |
| mm4_exon_Oxnad1_chr14_32100019_R | GTCTCGTGGGCTCGGCAGAAGAAAACACGCTCCTGT | 58.7 | 0.01 |
| mm4_intron_Mylk_chr16_34955892_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Mylk_chr16_34955892_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm10858|Gtf3a_chr5_146898277_F | TCGTCGGCAGCGTCTGAGAAGAGAACACACGGGC | 59.9 | 0.01 |
| mm4_intergenic_Gm10858|Gtf3a_chr5_146898277_R | GTCTCGTGGGCTCGGTGTCTCATTGTGCTCCTGGC | 60.3 | 0.01 |
| mm4_intergenic_Ccdc50|Fgf12_chr16_28099135_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ccdc50|Fgf12_chr16_28099135_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Smr3a|Smr2_chr5_88008594_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Smr3a|Smr2_chr5_88008594_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cenpj_chr14_56529021_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cenpj_chr14_56529021_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Mdh1b_chr1_63701030_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Mdh1b_chr1_63701030_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Tex36_chr7_133600590_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Tex36_chr7_133600590_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Spock1_chr13_57535948_F | TCGTCGGCAGCGTCGCCAGCATGAGAACTTTGGG | 59.4 | 0.00 |
| mm4_intron_Spock1_chr13_57535948_R | GTCTCGTGGGCTCGGTCAAAGGGGCTATCCTCAATTTCT | 59.7 | 0.00 |
| mm4_intron_Tenm4_chr7_96844137_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tenm4_chr7_96844137_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Hdac9_chr12_34433457_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Hdac9_chr12_34433457_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25976|Acot10_chr15_20538752_F | TCGTCGGCAGCGTCGTCTAACATCTCCTAAGTGTCACCT | 59.5 | 0.00 |
| mm4_intergenic_Gm25976|Acot10_chr15_20538752_R | GTCTCGTGGGCTCGGTGTGTACTTTCCTAATGTGACTGA | 57.5 | 0.00 |
| mm4_intergenic_Gm25778|Ppapdc1a_chr7_129173063_F | TCGTCGGCAGCGTCAGCCCCACATGAAAGAAGGG | 59.9 | 0.00 |
| mm4_intergenic_Gm25778|Ppapdc1a_chr7_129173063_R | GTCTCGTGGGCTCGGTGAACTACTCTGAAAGGCAGTGA | 59.3 | 0.00 |
| mm4_intron_Slc8a2_chr7_16153085_F | TCGTCGGCAGCGTCGCTTCAGCACTGTGGAATGC | 60.1 | 0.00 |
| mm4_intron_Slc8a2_chr7_16153085_R | GTCTCGTGGGCTCGGAGAGAGGGTGAAGGGAGCAA | 60.1 | 0.00 |
| mm4_intergenic_Phlda1|4933440J02Rik_chr10_111569681_F | TCGTCGGCAGCGTCTGGTACCCATCCCTTCCTGT | 59.8 | 0.00 |
| mm4_intergenic_Phlda1|4933440J02Rik_chr10_111569681_R | GTCTCGTGGGCTCGGGCACAGGTCAATGTTCCTCC | 58.8 | 0.00 |
| mm4_intergenic_Vrk2|Gm12071_chr11_26666225_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vrk2|Gm12071_chr11_26666225_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Smc5_chr19_23273261_F | TCGTCGGCAGCGTCGAAAGGAGGATTGGACGGGG | 60.1 | 0.00 |
| mm4_intron_Smc5_chr19_23273261_R | GTCTCGTGGGCTCGGACACGATTTCCAGAATGGGCA | 60.2 | 0.00 |
| mm4_intergenic_Gm25495|Gm23225_chr14_91004867_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25495|Gm23225_chr14_91004867_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_2310002F09Rik|Klk13_chr7_43711219_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_2310002F09Rik|Klk13_chr7_43711219_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Olfr27_chr9_39131596_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Olfr27_chr9_39131596_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zfp207_chr11_80402756_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zfp207_chr11_80402756_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_G930045G22Rik_chr6_50853986_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_G930045G22Rik_chr6_50853986_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tacc2_chr7_130725743_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tacc2_chr7_130725743_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rad18_chr6_112677907_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rad18_chr6_112677907_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Mapk12_chr15_89138265_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Mapk12_chr15_89138265_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Bbs9_chr9_22801061_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Bbs9_chr9_22801061_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Speer2|Gbe1_chr16_70287685_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Speer2|Gbe1_chr16_70287685_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pros1|Epha3_chr16_63120653_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pros1|Epha3_chr16_63120653_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25176|Smarca2_chr19_26353842_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25176|Smarca2_chr19_26353842_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Fer|Pja2_chr17_64188350_F | TCGTCGGCAGCGTCGCTGCTCTGTGTTTGGCAAA | 59.8 | 0.00 |
| mm4_intergenic_Fer|Pja2_chr17_64188350_R | GTCTCGTGGGCTCGGCCTGTGCTTGCTCATCTGGA | 60.0 | 0.00 |
| mm4_intergenic_Chst11|1700025N21Rik_chr10_83121498_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Chst11|1700025N21Rik_chr10_83121498_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_4930412D23Rik|Gm25061_chrX_127842858_F | TCGTCGGCAGCGTCTTTGAGGCACAGACCTTGGG | 60.1 | 0.00 |
| mm4_intergenic_4930412D23Rik|Gm25061_chrX_127842858_R | GTCTCGTGGGCTCGGGCATGGGGTTGGAGTTGTCA | 60.5 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_intergenic_Igkv9-123|Igkv1-122_chr6_67998285 |
AACAAGGTTTCTTTCATTTGTGTTTATTAAAGCCTATATAGAAACATAATCATATGTATGTATATGACACAAATTAAAAG TGAAACTTTCCAGAGTAACAAACTGTTAGGTTTTGGATGTGA |
| mm4_intergenic_Xkr4|Gm1992_chr1_3454982 |
CCCACATTGGTGATGTCCCATGGAAGATAGAGTGGCACCTCTCCCCTATCCAGAAATATCAACATGCTGTCACTCTACCA CGTCTCCTTTCAGTGG |
| mm4_intergenic_mmu-mir-6342|Gm23771_chr1_29914213 |
TGTTCAGTCTGCAGATTGAGGAATTTAATTCATTAGAGCCTCATGTTGATGTTTCAGGATCGGTGTTGGGTACCTCAACT GTTT |
| mm3_intergenic_Prdm4|Ascl4_chr10_85917791 |
GGCAATATCCCATACCCCACAATTCACTAATCATACCTAAGTATTTACCCAATACAGAAACANNNNNNNNNNNNNNNNNN NNNNNNNNNNNNCAAAGACATATGTACTAAGTTCCTTGCAACTTTGTTAATGATCTGT |
| mm4_intron_Cnga2_chrX_71993671 |
AGGATGGATGGGGAAGAGGAGAGAGATTTCAGCAGTAGAATAAGCAAGATTTAGGAGTTTTGCAGGAGGTATCAAAGATA ATGGGTAAGTTTCTGGATTGGTGGCTTGTGAGGAAAGATGAGC |
| mm4_intergenic_Gm833|Gm25779_chr4_152878411 |
ACACACACAAAGCTCCCTCATCCTTCTGAGACACAAGCAAGATGGAGGAACATAGTTATTCTTCAGGATTGGTCTTCCTT GGCTCTTTGTTGCTGATCTGGACTCCAGAGACACTTCCG |
| mm2_intergenic_Gm13468|Gm13481_chr2_48004953 |
GCGGGACAAGAGGTTAAAATGGTTAGGCTGAATGCTATTGATTTATACAAGGATTTCCAATCCAGAAACATAAACAGGTT CTGAGGAAAAGTCTCCTTTCTCTAGAAGACTTCTAATTCTAACTGATGCAATCCCTGTGA |
| mm4_intergenic_Gm23558|Galc_chr12_97974206 |
ACGAATGCAACGGTAGTTTGCGAATTTATTTTCCGCAGATGAAATCGATATGTTTCTGGAAAGGACTTTACCCTGCGTTT ATTCACTGGGGAGCATTTGTGTCCT |
| mm4_intergenic_Lzts3|Ddrgk1_chr2_130651698 |
AGATTTGCTTGAGTTACATGAGAGCCTATCTAGAAACAGAAACAAGTGTTTAAAATATTTATATGTTAACTTTTTGTGTG TAGTGCTAAAAATCAAACATGAGACTTTATATATGCTATATCCACAGCCCTGAG |
| mm4_intron_Tmem163_chr1_127596556 |
CATCCACCGGTTCAGATGCTTGGTAAGCAGATAAAGTAACATCATTTTGATCAGACATATAACGCGCCCAATTCAGAAAC ATAGCCAATTACTTACTCCTCATGGATTCAAGAATATAAGCTAAGATGGAATGTGCTACA |
| mm4_intergenic_Gm6806|Gm22332_chrX_68545508 |
ACTTTAATCCCTTCTGAGAGGAGACCCCAACCAGTGACATAACCATATTCTATTAGATTCTATCAACACTTGACATCATC AAGCTGAAGTTTAGGTTTCTAAGACATGAAATCTTGTAAGCAACCTGT |
| mm4_intergenic_Gm22483|Prelid2_chr18_41099431 |
TCCCATAGGAATTCAAGACAAGCTAAATGCTAAAAAATTTTCTGTTTATTGTGTAAGGTAAAGAATGATGTACCACAGCC ATGTTTCTGTTTCTGAATGGGTGGTAGTAGCCAAGAGAGGCAGTAGATACTCAGCA |
| mm4_intergenic_4833403I15Rik|Arl14epl_chr18_46916547 |
CTGATGGGCTGATTGATGAGGAAATTTACTATAAGTTGAGTACAGTTAACAGTCTTCAAATGTTACTTTTAAAATTTACT ATGTGTACCATACATGCATATATTTCTGGGTGGGTGTATAAGTGTGTGGTGCTTGTAGGT |
| mm4_intron_Arhgap29_chr3_122001886 |
GCTCTTTCTCACGTGGCTCTTTCTCTCATATTTCAAATGTCAGCTCTTTGGCCTTCCCTAACCTATCATGTTAAAAATAC CCTTCCAGAAACACAAGCATGGTGATAAAGCAGGGGATAGGATAGCA |
| mm4_intron_Arhgap15_chr2_44384697 |
TCTCTGGTAACTCACTGATACTCTAAAAATATGAGACTCCCTTCCAGAAACGTAGCCATGCCAACAATACTCACAGGTAC AAATGTTCTCCATTTAAAGCAGGAGGAAAAGAAAAATGTGAAGCGGGATGTCTTGGA |
| mm4_intergenic_Myc|Pvt1/PVT1_1_chr15_61991568 |
GACACACGCTCATCAATGGCCCATGAGAAAGCCTTTTGGAACAGGTATCTTATTAATTATAAGCCTCTGAAAAGCCACAA TCCAAACCAGAAACTGAAACATGTAGGTAAAGTCCAGGGAGAAAGGTACC |
| mm4_intron_Slco1a6_chr6_142088626 |
ACATCCCCTGCCATAAACCCTTTGAACAGCACAAAGGCTCACTTTTCTCTTCAAGAAGTTTTCAGAATAGTGCCTATCCA GAAAAAGAACCATAGGTGCAAATTCCTTTAGGCTGAA |
| mm4_intergenic_Utp20|Slc5a8_chr10_88850381 |
TTTACCGTAAGACGCAGGCGGTTGTGCACATGTTTATGTATCTGTTTAGGAGAAGGGGATGGTTTAAGTGAGAATTTTCC CCATCAGTCTTGGGAAGCAGTGTAACTCAAGCAAGACTGGCTGAGCTT |
| mm4_intergenic_Gm23131|Lphn2_chr3_148602649 |
CCCAACCCAAACACAAGCAGTTCTTGGAGAAGTGAAAGTCCCTACCCAGAAACATATCCTTGACATTAAGACCTAGTCAC TGTGAGTTGC |
| mm3_intergenic_Gm4884|Gm2128_chr7_41097014 |
AGAGGTGACCCATTGACAACAATATAAGATTTTGTAGATGTTTTCTCTAATCCAGAATCATAACCAAGCCCAAATATTTC ATTTCCTTATGTCAATTTGCATATCATTTACAGGAAGTCTGTGAGATACAGTGCTGGAAG |
| mm4_intergenic_Ralgps2|Tex35_chr1_157041581 |
TGGAGAGGCGGTGAATTCAGACATGGTAAAGTTTCTGGGAAGGAGCTGCAGCTACTGAGATAGAAGGAAACCCATCTTAG GAGAATCATTGGAAGTCCATAACATCTCGTGTCTTCTCCTTCTCCTCCTTTCCCAAGCC |
| mm4_intron_Ksr2_chr5_117611521 | GGCTCCCCACAAAGGACTTTGTCCCCTATCCAGAAACAAAAGCTTTTCCTGACAAAGGACAGAGGCAAGAGGAACC |
| mm4_intergenic_Gm4922|Perp_chr10_18842007 |
CCTCCCACAGGTTGTGTAGACAGAGTCCCACCATTAGTTAGATTTCTACTTCCTGAATACTCCAAAGGCCACAGGCAGCC AGGACAGAATTATGTGTCTGGATGGGGCAGGGGAGCGGAAGTGGCTGTTGTGTCA |
| mm4_intron_Galnt18_chr7_111706832 |
CCTAATTAATAGGGTCAGTGTCCTAAGAAGGTTCTGTTTCTGTATTGGTGCCCAGTGATACACACAGAGCTTCCCTGACC CACGTGCTCTGGCCTCTTTA |
| mm3_intergenic_Chrne|Gm12315_chr11_70620575 |
AGCCCTTTATGCGTTACACCTTATGCATCACCCCAATCCAGGAAAATAATCATGTCTGTCCTGAATTTGTGAAAAGATCT GTAGCGGAGGGTCACT |
| mm3_intergenic_Fam173b|Tas2r119_chr15_32119260 |
GAGCCGCTGTCTGAGAAGTTGAAGGAATCTAATCCAGAAACACAACCAAGGCTGCTACCTTCTCTGTGGAGTGGAGAACA GAATTCTGGCCTTCCTGAGAATAGAACTGTGGAGACTCTGAAGCATGGTGGAGC |
| mm4_intergenic_Fbxw11|Gm8192_chr11_32753910 |
GGTGCACACCCTATGACTTCAGAGGCCCAACTACTTACAGCTCTGTAGAATTGACTTTCCTAGCCAGAAACATGACCTTG AGGACAAGACCTTTATTTGTCTTGTTTAGAGGTGGAGCACAAGGC |
| mm3_intergenic_Adra2a|Gpam_chr19_54412906 |
CACTTGGCCCTCGATGAAGTTCTCATGGTTAACTTTCTGGATGAGCAAACTGAGACACAAGAGGTTTGAGGCACGCAGCC CCCAAAGGTGGCTAAGCTAGGGTGA |
| mm4_intergenic_Gm26871|Dpyd_chr3_118541161 |
TCAGTGTTGGGATGGATGGTTATAGAAAAGCAACATGGTTAAGATAATGGATTGGAGTTGGAGGAAGCTTCAAAACAGAC T |
| mm4_intergenic_Dok5|Gm14263_chr2_170912170 |
TCTCAAAGTCAAAATGAAAGTTGGATCTACTCCAACCTGCCAGTGTTCTGTTTCTGGATAGGCGGATAAGGGAATGAGTT TGTCAGTTTGACACATTGGGTTCAGGGCTCT |
| mm4_intron_Col23a1_chr11_51527207 |
GGGATGCAAAACGGGAAGACTAAGGAAACACGGAGACTAAGGCATGGTTTTGTATCTGGCTCGGTTGTTAAAATATTAAA TGGGTTAAGCAAGCAGGAATTCTTAAGCTACCACTGCAAGGGGCTTGAAGGGGTAG |
| mm4_exon_Hdac11_chr6_91174675 |
TCCAGGTTGTTGCTGTGTGTTCTGAGGTAGACAGACCTGCCTCCTGAGGACCACTGGAAATAAAGATTCAAAATTCACCA ATCCAGACACTTAACCAGGGCAGCTGCCCAAGATGAGTGGTTGT |
| mm4_intron_Park2_chr17_11267881 |
ATTGCAGCAGGAAGGAGCATGACGTCACCTCCCTCAAGGTTGTGTTTATGGATGGGAATTCTCACAGCTCATCTCGGTGG CTGGGACGTCTTGGCTTGTTGGTGATGGTTCACGGCTGGGTGGTCTGTAGTTC |
| mm4_intergenic_Acer3|Tsku_chr7_98321413 |
GAGCAAAGTGGGACAGAGTGACAGAAATCCTGTTCCAAAGACAAAAAGAAGCCATCCTATCCAGAAAAATAAAAATATAC AGATTCTCAACAGCAATAATGAACTGGGAGGCCTACTCCTTGGGAGTTAGTGCTGTGGTG |
| mm4_intergenic_Gm22508|Ccdc68_chr18_69788341 |
TGAAAGCTGGAGGTGTTCAAGTTAACGACAAATGCTTCAGCACTTTCCTGCCCATGCATAAACATCTCCATGTAAAATAG AAAGGGGTGCTCTGTTTATCACAGCTGTAGTCAAGCCAAGGA |
| mm4_intergenic_Gm13211|Gm13254_chr2_7907356 |
CATCAGGGAGCTCTCTGCACCTTTTGCAATGATTAACATGGGTATTTCTCTGGGTTGGGTGGTTACCTTAGTCTGTAAAG TACTTGCTTGGT |
| mm4_intergenic_Gm17566|Gm23153_chr1_190469619 |
TCCCTAGCAGTTGTGAAAGCTTGGATAAGGTTCGAAACTTCTTTAAATCTAGTACTTCCTATTCAGGAACCTAAACATGT CATCATTGGGTTATTATGAGCACAACATGATATTCAACATACCCCACCATCAGAAATCGT |
| mm3_intergenic_3110039M20Rik|Gm9804_chr12_49394183 |
ACTCGAAATTATGCCAAGGGTCCTTATCCAGAAAAATAGCCATATAATGTCCTATATATTAAATACATGTATGCACATAT GTTTTATTAGTGTGCA |
| mm4_intergenic_Nek10|Lrrc3b_chr14_15308540 |
TGCCCTCAGAACATTCACTGGGTTCTAGATTCTGGGCAGAAAATTCTGCATGGGTAAACAGTAAAGGATTTATGAACAGA GAACTGTCCTGTCCAGAAGTATAACCAAGTGGGAGTTTGGGGAACGAGAAGCCTG |
| mm4_intergenic_Gm25178|Eefsec_chr6_88408985 |
ATGTCAAAGGCTTGCTTGGCCTGAAAAGTGAAGTCCTAGGCAGAAACATGCCCATGTCTTAGAGAAGAAAGAGTTCAGGC TAACAAAAGTGCTTCCACAAGTTTCCACGAGCAGGAGTG |
| mm4_exon_Psd4_chr2_24394189 |
ACCACCTCAGACCCATGGAATGTCTCAATATTTGCTTGGAAGACAACTTACAACCCTGTCCAGAAGCATATCCAAGTGAA ATACATGGCCATCCAGGCCCTTCTGAAC |
| mm4_intron_Polr3b_chr10_84652297 |
TGTAGCTCTTGTCATAGCAGTCTTCACATGGTTTGGTTTCTTTATGGGGAAACTCTGCATTCCACAGTGACATTCTGAGT GAAGAGTTGATGGCTGCT |
| mm4_intron_Dpy19l2_chr9_24692999 |
AGCTATTCATCTGGGCTAACAGAATAAATGCAAAACAACCCAATGCAGAAACATAAAATTGTCATGTTGAAATCCCTAAC ACAACTCCTCTTTGCCTATATAACTGGGATATGCTGGGCTC |
| mm2_intergenic_Plcl1|Hsfy2_chr1_56483952 |
TGGCCTCCAACACATTGACTCACAATGCCACAGACTGTGAATAGCTTTCCATGGCTATGTTTCTGGATAGAACCATAAAA TATTTTCATAGATGTCATAAGGGGAAGATTTTCTATCTGCACCCAGACAGACAAG |
| mm4_intergenic_Siglec1|Hspa12b_chr2_131106107 |
GGTCTCTCTTCAGCACTCGGTGCTCCCCTTTTCCCTATTCTCTAGCCCCAACCAGGAAGCTAACCATGTGCTTTCTTCCT TTAGCTACACAGATGTCATTGATGTTGTGCAAGCCCTGCAGACTCACTCAGAC |
| mm4_intergenic_Gm23708|G6pd2_chr5_61395920 |
TCAGGAGAAAGCACCGATTGTAGGACTTTTCTCTGTGTAGAAAGTAGAACCTCTTAAAAGAACAATAGGGTGTGGATAGA CAGGGTGATGTTTCTGGGGAGGTGGATGAGGATGGGCTTGAA |
| mm3_intron_Dmd_chrX_84776916 |
AGTGCTTTAATGCTATGCAACTCTAAAATTCTGAGATAATGCATTTTCAATCCAGAAACATCACTGTGTGTGTGTTGTGT GTCCATGCTC |
| mm4_intergenic_Gm23061|Ostf1_chr19_18454267 |
CCATGTTTTCCTTCTGTTCTGTGTTCTGTATCACAATGAAATGGTTTTGTTTTTGGTTTGGTTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNTTTTAAATAAGTCCCTTGCAGGCCAACACTTTT |
| mm4_intergenic_Gm22527|Rnf144a_chr12_25934937 |
TTTCAAACTGGTGGCCCACAGCCCCCTCCAGACCCATAAACATGTTTATGTGCCTCACTCCATCATTCTTCATCCCAGGA AACATTTATATCCGAAGAATTTCACATAAAAAGTCAGACCTGCCAACTCCAG |
| mm4_intergenic_Gm16194|Rab44_chr17_29134891 |
AAGTCTCTGGGTGTGTTGCCATTAAAACTGAGGACTACGGTTAGGGATATGGTTTTGTTTGTGGAATGGCAACATACATG AATCTGTCTGTGGGACCCGTTCCCAGCACCACCATAA |
| mm4_intergenic_Ttll7|Gm23131_chr3_148188530 |
TTCCCAAAGACTCACCCGTTAACATTTAATTACTGTGTCCTTTTGATATTTTAAATATCATCTGAAGATGGTTTTGTATG TGGATAGGTAAGAGTTTAAACCAAAATGGAGCAAATAAACATCAGAGTCA |
| mm4_intron_Gtf2h3_chr5_124591418 |
GGTGATCATTGTCATTCTTGCACAGTAGTGTTCTGGCTAAACAGGGCTGTGTTTGTGGATCGGGGATTCAGAAGCCACAC TGGGTGCTTGTCATTTTTCTGTTTAGGGTCCTGGGCAG |
| mm4_exon_Oxnad1_chr14_32100019 |
CGAAGTGCCTGATGTAACACCAGAATGTATTATCTGATCACCCAGTGAAAATGTCTTCTATGAAGCCCATCACTAAACAG TGAATATATGCCAATCCAAATAAATAAACATGTAAATAAACAGGAGCGTGTTTTCTTCTG |
| mm4_intergenic_Gm10858|Gtf3a_chr5_146898277 |
TGAGAAGAGAACACACGGGCTGGGCCAGGGCAGGGATGGCCTTCTGAAAAACTCTGGGTCGCCGCACCTGGTTGTGTTNN NNNNNNNNNNNNNNNNNNNNNTGTCGGCCAGGAGCACAATGAGACA |
| mm4_intron_Spock1_chr13_57535948 |
GCCAGCATGAGAACTTTGGGGGATACCTTCAGATCATATAGTGATATGGTTATGATTTTGGAGGGGAGGGAATACCAGGT ATTTTTAGTGATAATGATCAGTATAGAAATTGAGGATAGCCCCTTTGA |
| mm4_intergenic_Gm25976|Acot10_chr15_20538752 |
GTCTAACATCTCCTAAGTGTCACCTACCCCCTCCTAAAACAAAACCATGTTTTATTTATTCCTTGCATGTATTATTTATT CCAATGGTTTTATAACAATTACATCATCAGTCACATTAGGAAAGTACACA |
| mm4_intergenic_Gm25778|Ppapdc1a_chr7_129173063 |
AGCCCCACATGAAAGAAGGGCAAAGACTTGAACCATTATCAAATGCCCAATGCCTAGACAAAAACATAAGCATGTTCACT GCCTTTCAGAGTAGTTCA |
| mm4_intron_Slc8a2_chr7_16153085 |
GCTTCAGCACTGTGGAATGCACATGGTTACCTTCCTGGACAGGGCATGTAGAGACAGCCCCACAGCCCCCAGCCACACCA CCCTGGGATGCTGTAAAACTAATTGCTCCCTTCACCCTCTCT |
| mm4_intergenic_Phlda1|4933440J02Rik_chr10_111569681 |
TGGTACCCATCCCTTCCTGTACTCTGCATTTACCCATCCACAAAGGTAACCTTGTCTTTGTTTGAAAGCTCTCTCCCTAG CTATCCTGATTCCATTAGCAGCTTGTTTCTAAGGAGGAACATTGACCTGTGC |
| mm4_intron_Smc5_chr19_23273261 |
GAAAGGAGGATTGGACGGGGCAAGAATCTGCAAGGAGGTACAAAAACTGGGAACACGATTTTTAATTTCTTTGGTACACT CTAATCTCCAATCAACAACCATTACCATGTCATCTGCCCATTCTGGAAATCGTGT |
| mm4_intergenic_Fer|Pja2_chr17_64188350 |
GCTGCTCTGTGTTTGGCAAACCTTGTGGCTTGGCTTTTGTGCCTAGATTGGTTTCCCAACCAACAACATAACCAGGTGCT CAAGGCCTGAGAGTGGCACACGCCCTGTCTCATTTTCTCCAGATGAGCAAGCACAGG |
| mm4_intergenic_4930412D23Rik|Gm25061_chrX_127842858 |
TTTGAGGCACAGACCTTGGGCATGGTGTCATGGGATACCACTGAGATCCCATCTAGCAACACTACCATGTGAGTGACAAC TCCAACCCCATGC |