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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313859_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313859_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm3_intergenic_Cd274|Pdcd1lg2_chr19_29400401_F | TCGTCGGCAGCGTCACCCTTGTAAGTGGATCGAGTC | 59.5 | 0.70 |
| mm3_intergenic_Cd274|Pdcd1lg2_chr19_29400401_R | GTCTCGTGGGCTCGGGCTGAAAGCTTTGGATCAGG | 57.0 | 0.70 |
| mm4_intron_Angpt2_chr8_18697142_F | Primer3: not found at this Tm | N.d. | 0.69 |
| mm4_intron_Angpt2_chr8_18697142_R | Primer3: not found at this Tm | N.d. | 0.69 |
| mm4_intergenic_Olig3|Ifngr1_chr10_19397372_F | Primer3: not found at this Tm | N.d. | 0.65 |
| mm4_intergenic_Olig3|Ifngr1_chr10_19397372_R | Primer3: not found at this Tm | N.d. | 0.65 |
| mm4_intergenic_Gm8349|Arhgef26_chr3_61823664_F | Primer3: not found at this Tm | N.d. | 0.60 |
| mm4_intergenic_Gm8349|Arhgef26_chr3_61823664_R | Primer3: not found at this Tm | N.d. | 0.60 |
| mm4_intron_Rnf152_chr1_105304855_F | TCGTCGGCAGCGTCACCACTTCTGCAATCCCAGT | 59.2 | 0.57 |
| mm4_intron_Rnf152_chr1_105304855_R | GTCTCGTGGGCTCGGACTAATGGTCCAAGGAAGGGG | 59.0 | 0.57 |
| mm4_intergenic_Sphkap|Gm25754_chr1_83586993_F | TCGTCGGCAGCGTCCAGTGGTTCCAGGAAGTCCA | 59.2 | 0.57 |
| mm4_intergenic_Sphkap|Gm25754_chr1_83586993_R | GTCTCGTGGGCTCGGAGGCTCCACAAAGACAAGGAG | 59.9 | 0.57 |
| mm4_intron_Bcor_chrX_12096525_F | TCGTCGGCAGCGTCTTTCTTGGTCAGAGGAGCCG | 59.6 | 0.54 |
| mm4_intron_Bcor_chrX_12096525_R | GTCTCGTGGGCTCGGCTAAGGGCTCCTGCTGTCAC | 60.1 | 0.54 |
| mm3_intron_Arhgap15_chr2_44384698_F | TCGTCGGCAGCGTCTCTCTGGTAACTCACTGATACTCT | 57.9 | 0.53 |
| mm3_intron_Arhgap15_chr2_44384698_R | GTCTCGTGGGCTCGGTCCAAGACATCCCGCTTCAC | 60.0 | 0.53 |
| mm4_exon_Inpp5d_chr1_87667917_F | TCGTCGGCAGCGTCTGTCATGTCACCACCTGAGC | 59.9 | 0.52 |
| mm4_exon_Inpp5d_chr1_87667917_R | GTCTCGTGGGCTCGGTCTGTTGCAAGAGGAAGGTCC | 59.9 | 0.52 |
| mm4_intergenic_Csnka2ip|4930453N24Rik_chr16_64553642_F | TCGTCGGCAGCGTCCAGCCACCAAACCTAGATCCT | 59.4 | 0.51 |
| mm4_intergenic_Csnka2ip|4930453N24Rik_chr16_64553642_R | GTCTCGTGGGCTCGGAACCAGAGAAGTGCTGTGCT | 59.5 | 0.51 |
| mm2_intergenic_Gm24815|Gm9144_chr12_7828824_F | Primer3: not found at this Tm | N.d. | 0.50 |
| mm2_intergenic_Gm24815|Gm9144_chr12_7828824_R | Primer3: not found at this Tm | N.d. | 0.50 |
| mm3_intron_Greb1_chr12_16691060_F | TCGTCGGCAGCGTCGGATGGCGTGTGGAACCTAA | 60.0 | 0.49 |
| mm3_intron_Greb1_chr12_16691060_R | GTCTCGTGGGCTCGGTCTCAGTGCATGACCTTGTCC | 59.9 | 0.49 |
| mm4_intergenic_Gm11298|Vmn1r201_chr13_22472139_F | Primer3: not found at this Tm | N.d. | 0.48 |
| mm4_intergenic_Gm11298|Vmn1r201_chr13_22472139_R | Primer3: not found at this Tm | N.d. | 0.48 |
| mm4_intron_Myo18b_chr5_112732104_F | Primer3: not found at this Tm | N.d. | 0.47 |
| mm4_intron_Myo18b_chr5_112732104_R | Primer3: not found at this Tm | N.d. | 0.47 |
| mm4_intron_2310061I04Rik_chr17_35893792_F | TCGTCGGCAGCGTCGCTTGAGCCTAATAATTTTGGGG | 58.0 | 0.46 |
| mm4_intron_2310061I04Rik_chr17_35893792_R | GTCTCGTGGGCTCGGCCAGTCTGGCATGCATGAAC | 59.5 | 0.46 |
| mm4_intergenic_Nox3|Gm23186_chr17_4616050_F | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_Nox3|Gm23186_chr17_4616050_R | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_Slc24a3|Gm22390_chr2_145449713_F | TCGTCGGCAGCGTCATCCTTGTTGCTGGGCTCTC | 60.0 | 0.45 |
| mm4_intergenic_Slc24a3|Gm22390_chr2_145449713_R | GTCTCGTGGGCTCGGCCAGGTCTGAGCGTGAAGAA | 59.6 | 0.45 |
| mm4_intron_Msra_chr14_64268451_F | TCGTCGGCAGCGTCTAACTCTGTCCGTGAGCTGC | 59.7 | 0.44 |
| mm4_intron_Msra_chr14_64268451_R | GTCTCGTGGGCTCGGCCTGACACTTCCTGGGAGGA | 60.5 | 0.44 |
| mm4_intron_Myo5a_chr9_75195263_F | Primer3: not found at this Tm | N.d. | 0.42 |
| mm4_intron_Myo5a_chr9_75195263_R | Primer3: not found at this Tm | N.d. | 0.42 |
| mm4_intron_Sgms1_chr19_32231674_F | Primer3: not found at this Tm | N.d. | 0.42 |
| mm4_intron_Sgms1_chr19_32231674_R | Primer3: not found at this Tm | N.d. | 0.42 |
| mm4_intergenic_Gm10827|Nhsl1_chr10_18381369_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intergenic_Gm10827|Nhsl1_chr10_18381369_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intergenic_Cdh7|Cdh19_chr1_110609910_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intergenic_Cdh7|Cdh19_chr1_110609910_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intergenic_Zfy2|Gm22119_chrY_2368043_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Zfy2|Gm22119_chrY_2368043_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intron_Gm15155_chrX_156219211_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intron_Gm15155_chrX_156219211_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm25176|Smarca2_chr19_26596664_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_Gm25176|Smarca2_chr19_26596664_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_Gm16203|Sgcz_chr8_38485113_F | TCGTCGGCAGCGTCTCTTCCTGCATGATGAAGACCA | 59.4 | 0.37 |
| mm4_intergenic_Gm16203|Sgcz_chr8_38485113_R | GTCTCGTGGGCTCGGCCTTCTCAGTTCTGTGCCCC | 60.3 | 0.37 |
| mm4_intergenic_Gm5611|Chordc1_chr9_17629738_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Gm5611|Chordc1_chr9_17629738_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intron_Cenpf_chr1_189669542_F | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intron_Cenpf_chr1_189669542_R | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intergenic_Gm22495|Dtna_chr18_23212617_F | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intergenic_Gm22495|Dtna_chr18_23212617_R | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intergenic_C1galt1c1|Ap3s1-ps1_chrX_38673914_F | TCGTCGGCAGCGTCCTCTCCCTGGCTTTGGGTTT | 59.8 | 0.35 |
| mm4_intergenic_C1galt1c1|Ap3s1-ps1_chrX_38673914_R | GTCTCGTGGGCTCGGACACGGGGTCATCATTCCAC | 60.0 | 0.35 |
| mm4_intergenic_Zfp97|Gm6712_chr17_17212802_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Zfp97|Gm6712_chr17_17212802_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Zfp97|Gm6712_chr17_17152888_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Zfp97|Gm6712_chr17_17152888_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Zfp960|Zfp97_chr17_17095677_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Zfp960|Zfp97_chr17_17095677_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_BC002059|Zfp960_chr17_17047488_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_BC002059|Zfp960_chr17_17047488_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_BC002059|Zfp960_chr17_16979657_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_BC002059|Zfp960_chr17_16979657_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Gm8993|Gm9001_chr6_75631226_F | TCGTCGGCAGCGTCAGGACAGATGGCTACTGCAA | 58.7 | 0.35 |
| mm4_intergenic_Gm8993|Gm9001_chr6_75631226_R | GTCTCGTGGGCTCGGTGCCACATTTCAGTTACCTGA | 57.5 | 0.35 |
| mm4_exon_Taf1d_chr9_15311856_F | TCGTCGGCAGCGTCTTTTCGTTGCTTGATTTCAGAGT | 57.5 | 0.34 |
| mm4_exon_Taf1d_chr9_15311856_R | GTCTCGTGGGCTCGGCGAGGCTGGGGTCTTGAATC | 60.4 | 0.34 |
| mm4_intergenic_Gm11116|Gm11115_chr5_88125342_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm11116|Gm11115_chr5_88125342_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm6317|Gm25383_chr13_79027742_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Gm6317|Gm25383_chr13_79027742_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intron_Zranb3_chr1_128003766_F | TCGTCGGCAGCGTCTCACTTGAATGGAAGAATGGGA | 57.3 | 0.31 |
| mm4_intron_Zranb3_chr1_128003766_R | GTCTCGTGGGCTCGGACCTCCGTGCATCTCTGTTC | 59.7 | 0.31 |
| mm4_intergenic_Gm23661|Gm23067_chr5_70079707_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Gm23661|Gm23067_chr5_70079707_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Casp12|Pdgfd_chr9_5770906_F | TCGTCGGCAGCGTCACCGCAGACACTTTATAGGAGA | 58.6 | 0.30 |
| mm4_intergenic_Casp12|Pdgfd_chr9_5770906_R | GTCTCGTGGGCTCGGACAATCACCAAAGGTCTTTGCA | 58.9 | 0.30 |
| mm4_intergenic_Id2|Gm22527_chr12_25231788_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Id2|Gm22527_chr12_25231788_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Cat|Gm13996_chr2_103498821_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Cat|Gm13996_chr2_103498821_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Gm15577|Negr1_chr3_156977288_F | TCGTCGGCAGCGTCGCATACTTCCCTGGAGCTGG | 60.1 | 0.28 |
| mm4_intergenic_Gm15577|Negr1_chr3_156977288_R | GTCTCGTGGGCTCGGGCAGGCAGCTCAGATCTGTC | 60.8 | 0.28 |
| mm4_intergenic_n-R5s30|Rbfox1_chr16_5892746_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_n-R5s30|Rbfox1_chr16_5892746_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intron_Hecw1_chr13_14270687_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intron_Hecw1_chr13_14270687_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_D730003I15Rik|Nenf_chr1_191241425_F | TCGTCGGCAGCGTCGCTCTGACTTGGTAGCTAGCT | 59.2 | 0.28 |
| mm4_intergenic_D730003I15Rik|Nenf_chr1_191241425_R | GTCTCGTGGGCTCGGGCAGATGCTGGAGTACCTACG | 60.2 | 0.28 |
| mm4_intergenic_Oxnad1|Msmb_chr14_32133883_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Oxnad1|Msmb_chr14_32133883_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm3_intergenic_Nlgn1|Gm24250_chr3_25541165_F | TCGTCGGCAGCGTCAGCTGTGTGAGTTGACATGTCA | 60.1 | 0.27 |
| mm3_intergenic_Nlgn1|Gm24250_chr3_25541165_R | GTCTCGTGGGCTCGGTTGTCAGGGGATGGTGAAGC | 59.9 | 0.27 |
| mm4_intergenic_Gm6931|Ift57_chr16_49632709_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm6931|Ift57_chr16_49632709_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intron_Arhgap29_chr3_122001887_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intron_Arhgap29_chr3_122001887_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intron_Ptprk_chr10_28431496_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Ptprk_chr10_28431496_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm22016|Cdc73_chr1_141952495_F | TCGTCGGCAGCGTCGCACATGATTTGCAATGCACA | 58.9 | 0.26 |
| mm4_intergenic_Gm22016|Cdc73_chr1_141952495_R | GTCTCGTGGGCTCGGACATATGTTGGAATTTGCATTGACA | 58.3 | 0.26 |
| mm4_intergenic_Nrcam|Stxbp6_chr12_44670725_F | TCGTCGGCAGCGTCCTCATGACCTCTGCCACTCC | 59.8 | 0.26 |
| mm4_intergenic_Nrcam|Stxbp6_chr12_44670725_R | GTCTCGTGGGCTCGGTGTCCTCAGGAACCAGAAGA | 57.6 | 0.26 |
| mm4_intron_Ctnna2_chr6_76989781_F | TCGTCGGCAGCGTCCCCATGCATTCGACCTCCAA | 60.3 | 0.26 |
| mm4_intron_Ctnna2_chr6_76989781_R | GTCTCGTGGGCTCGGTGGACCTCTGAGTTGCTACT | 57.6 | 0.26 |
| mm3_intergenic_Gm26407|Impact_chr18_12963039_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_Gm26407|Impact_chr18_12963039_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Rab3c|Gm5455_chr13_110287964_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Rab3c|Gm5455_chr13_110287964_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm11146|Mir125b-2_chr16_77622019_F | TCGTCGGCAGCGTCTCAGGTGAATTCTTTGTTACTTCCA | 58.6 | 0.23 |
| mm4_intergenic_Gm11146|Mir125b-2_chr16_77622019_R | GTCTCGTGGGCTCGGCAGAGGCACAATACAGGGCA | 60.0 | 0.23 |
| mm4_intron_Klhl32_chr4_24623792_F | TCGTCGGCAGCGTCACATATGTACTCATACACAGACACA | 57.5 | 0.22 |
| mm4_intron_Klhl32_chr4_24623792_R | GTCTCGTGGGCTCGGATGTGGCCTGGTAGCACAAG | 60.3 | 0.22 |
| mm4_intergenic_Gm22939|Cntnap2_chr6_44992904_F | TCGTCGGCAGCGTCAGACTGATGCAAAATTTACCCTTGA | 59.2 | 0.22 |
| mm4_intergenic_Gm22939|Cntnap2_chr6_44992904_R | GTCTCGTGGGCTCGGTGGTCTCCATAGTAATAAGGTCCT | 57.9 | 0.22 |
| mm4_intergenic_Gm8577|Gm16390_chrX_154850013_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm8577|Gm16390_chrX_154850013_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm3_intergenic_Mir3964|Gm23033_chr15_29727962_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_intergenic_Mir3964|Gm23033_chr15_29727962_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm21820|AC132591.1_chrY_5355572_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm21820|AC132591.1_chrY_5355572_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_AC121988.1|Gm25740_chr10_46198704_F | TCGTCGGCAGCGTCGCTTGTACATTTCCCCAGTGG | 59.1 | 0.21 |
| mm4_intergenic_AC121988.1|Gm25740_chr10_46198704_R | GTCTCGTGGGCTCGGTCAGGAAGACAACAAAAGGCA | 57.9 | 0.21 |
| mm4_intron_Gm14461_chr2_78261986_F | TCGTCGGCAGCGTCAATGGCAACCAGGAACCCTT | 59.8 | 0.20 |
| mm4_intron_Gm14461_chr2_78261986_R | GTCTCGTGGGCTCGGCCCGTGCAATTTAATTCAAGGC | 59.0 | 0.20 |
| mm3_intergenic_Plcl1|Hsfy2_chr1_56483951_F | TCGTCGGCAGCGTCTGGCCTCCAACACATTGACT | 59.5 | 0.20 |
| mm3_intergenic_Plcl1|Hsfy2_chr1_56483951_R | GTCTCGTGGGCTCGGCTTGTCTGTCTGGGTGCAGA | 59.6 | 0.20 |
| mm4_intron_Arl6ip5_chr6_97213121_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Arl6ip5_chr6_97213121_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm5446|Elmo1_chr13_20001161_F | TCGTCGGCAGCGTCGCTTCCTGAAAATGCCCCTG | 59.4 | 0.19 |
| mm4_intergenic_Gm5446|Elmo1_chr13_20001161_R | GTCTCGTGGGCTCGGGGATAGGCTTCTTCCTCCTTGG | 59.8 | 0.19 |
| mm4_intron_Runx1_chr16_92743053_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Runx1_chr16_92743053_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Ube2e2_chr14_18614306_F | TCGTCGGCAGCGTCGGTGGAACCATCTGAGCTGT | 59.6 | 0.18 |
| mm4_intron_Ube2e2_chr14_18614306_R | GTCTCGTGGGCTCGGTGCCTGCCCACTTCACTTTA | 59.5 | 0.18 |
| mm4_intergenic_Nid1|Lyst_chr13_13581291_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Nid1|Lyst_chr13_13581291_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intergenic_Smr3a|Smr2_chr5_88008595_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intergenic_Smr3a|Smr2_chr5_88008595_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm11751|Gm23738_chr4_68168070_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm11751|Gm23738_chr4_68168070_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm23425|Gm22483_chr18_40931335_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm23425|Gm22483_chr18_40931335_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Ifng|Dyrk2/4932442E05Rik_chr10_118485786_F | TCGTCGGCAGCGTCTGCTGAATCACGTGTTGAGC | 59.1 | 0.16 |
| mm4_intergenic_Ifng|Dyrk2/4932442E05Rik_chr10_118485786_R | GTCTCGTGGGCTCGGTGGTGTGGTGTCTGTAGGGA | 60.1 | 0.16 |
| mm4_intron_0610040F04Rik_chr6_108613255_F | TCGTCGGCAGCGTCGCTGGTCAAAACATAAGTGCCA | 59.7 | 0.16 |
| mm4_intron_0610040F04Rik_chr6_108613255_R | GTCTCGTGGGCTCGGGTGAATAGGGTGGGGTTGGG | 60.0 | 0.16 |
| mm4_intron_Osbpl3_chr6_50378007_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Osbpl3_chr6_50378007_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Cenpc1_chr5_86040379_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Cenpc1_chr5_86040379_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Spag17|Wdr3_chr3_100135965_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Spag17|Wdr3_chr3_100135965_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Ccdc176_chr12_84411500_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Ccdc176_chr12_84411500_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Actn1_chr12_80189395_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Actn1_chr12_80189395_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm22689|Gm9742_chr13_7311644_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm22689|Gm9742_chr13_7311644_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm24633|Gm25568_chr1_19875326_F | TCGTCGGCAGCGTCACAGGTCAGGGGACATCTCA | 59.8 | 0.14 |
| mm4_intergenic_Gm24633|Gm25568_chr1_19875326_R | GTCTCGTGGGCTCGGTGTTGGTGATCAAACACAGGA | 57.7 | 0.14 |
| mm4_intron_Gpc6_chr14_117384716_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Gpc6_chr14_117384716_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intron_Spock1_chr13_57535947_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intron_Spock1_chr13_57535947_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Ndfip1|Spry4_chr18_38559899_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Ndfip1|Spry4_chr18_38559899_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Leo1|Tmod3_chr9_75481547_F | TCGTCGGCAGCGTCAGGAGGCAGAAGCGGCAG | 62.0 | 0.14 |
| mm4_intergenic_Leo1|Tmod3_chr9_75481547_R | GTCTCGTGGGCTCGGACGGCTTTTAGTGGCAACCT | 60.1 | 0.14 |
| mm4_intron_Gm12436_chr4_48904256_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Gm12436_chr4_48904256_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_4930432M17Rik_chr3_121679725_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_4930432M17Rik_chr3_121679725_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm24477|Trp53rk_chr2_166773441_F | TCGTCGGCAGCGTCGCTGGTCTAGGATGCGAGTC | 59.9 | 0.13 |
| mm4_intergenic_Gm24477|Trp53rk_chr2_166773441_R | GTCTCGTGGGCTCGGAGGAGACTGCAGGCTATCCC | 60.7 | 0.13 |
| mm4_intron_Fbrsl1_chr5_110428136_F | TCGTCGGCAGCGTCGCAGACACCTCCTTTCACCA | 59.8 | 0.13 |
| mm4_intron_Fbrsl1_chr5_110428136_R | GTCTCGTGGGCTCGGGGGCATATGACAGAGGGAGC | 59.9 | 0.13 |
| mm4_intron_Depdc5_chr5_32952103_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Depdc5_chr5_32952103_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm25976|Acot10_chr15_20538753_F | TCGTCGGCAGCGTCACATCTCCTAAGTGTCACCTACC | 58.9 | 0.13 |
| mm4_intergenic_Gm25976|Acot10_chr15_20538753_R | GTCTCGTGGGCTCGGTGTGTACTTTCCTAATGTGACTGA | 57.5 | 0.13 |
| mm4_intergenic_Smr3a|Smr2_chr5_88026693_F | TCGTCGGCAGCGTCAAATGAAGAGCTGAACGGCA | 58.1 | 0.12 |
| mm4_intergenic_Smr3a|Smr2_chr5_88026693_R | GTCTCGTGGGCTCGGAATGACCACTTAGCCTTCTGG | 57.6 | 0.12 |
| mm4_intergenic_Usp7|1810013L24Rik_chr16_8800410_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Usp7|1810013L24Rik_chr16_8800410_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_E130309F12Rik_chr4_49078477_F | TCGTCGGCAGCGTCTCACCTTCAGAAAGCCTTCCA | 59.2 | 0.12 |
| mm4_intron_E130309F12Rik_chr4_49078477_R | GTCTCGTGGGCTCGGGGTGTGGTAGCGGAATGACA | 60.0 | 0.12 |
| mm4_intergenic_Apoo-ps|Zswim6_chr13_107503189_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Apoo-ps|Zswim6_chr13_107503189_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm11499|Gm11500_chr11_92491424_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm11499|Gm11500_chr11_92491424_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm11115|Gm7714_chr5_88185882_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm11115|Gm7714_chr5_88185882_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm26913|Gm4076_chr13_84861963_F | TCGTCGGCAGCGTCCCTCCTTTAGTTTGCGCCTC | 58.9 | 0.12 |
| mm4_intergenic_Gm26913|Gm4076_chr13_84861963_R | GTCTCGTGGGCTCGGAAAGGAGCAGTTCAGGGCAA | 59.8 | 0.12 |
| mm4_intergenic_Gm11115|Gm7714_chr5_88254667_F | TCGTCGGCAGCGTCGCACGCACTTGCAGTCATTA | 59.4 | 0.12 |
| mm4_intergenic_Gm11115|Gm7714_chr5_88254667_R | GTCTCGTGGGCTCGGCCTGATAACCAGTTGGCTTCCT | 60.0 | 0.12 |
| mm4_intron_Sulf1_chr1_12818798_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Sulf1_chr1_12818798_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intergenic_Gm23558|Galc_chr12_97974205_F | TCGTCGGCAGCGTCACGAATGCAACGGTAGTTTGC | 60.0 | 0.12 |
| mm3_intergenic_Gm23558|Galc_chr12_97974205_R | GTCTCGTGGGCTCGGAGGACACAAATGCTCCCCAG | 59.9 | 0.12 |
| mm4_intergenic_Gm8261|Gm15075_chrX_146639839_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm8261|Gm15075_chrX_146639839_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm24298|4921513I03Rik_chr10_120657598_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm24298|4921513I03Rik_chr10_120657598_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm23526|Grik4_chr9_42933361_F | TCGTCGGCAGCGTCTATGGCAAGCACTCCAAGGG | 60.0 | 0.12 |
| mm4_intergenic_Gm23526|Grik4_chr9_42933361_R | GTCTCGTGGGCTCGGCCTTTCCTGATGCTCTTCCCC | 60.4 | 0.12 |
| mm4_intergenic_Gm7729|Gm24246_chr18_28156554_F | TCGTCGGCAGCGTCCCAGTTCCCTTGTCTCTGCC | 60.3 | 0.11 |
| mm4_intergenic_Gm7729|Gm24246_chr18_28156554_R | GTCTCGTGGGCTCGGAAGGTGCTCGGCTGAAGAAA | 59.8 | 0.11 |
| mm4_intron_Arhgef3_chr14_27286010_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Arhgef3_chr14_27286010_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Whrn|Atp6v1g1_chr4_63533243_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Whrn|Atp6v1g1_chr4_63533243_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_exon_Kcnq5_chr1_21398608_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_exon_Kcnq5_chr1_21398608_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Ssx9|Ssxb5_chrX_8800335_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Ssx9|Ssxb5_chrX_8800335_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Vwa8_chr14_78964086_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Vwa8_chr14_78964086_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Abhd12b_chr12_70163687_F | TCGTCGGCAGCGTCGTGAAGGTGTTCTGGCAAACA | 59.2 | 0.11 |
| mm4_intron_Abhd12b_chr12_70163687_R | GTCTCGTGGGCTCGGAGAAACCAGTGGCTTCATTGA | 57.7 | 0.11 |
| mm3_intergenic_mmu-mir-6393|Zdhhc25_chr15_88128812_F | TCGTCGGCAGCGTCGGGTTCACCTCCCTGTGTTC | 60.2 | 0.11 |
| mm3_intergenic_mmu-mir-6393|Zdhhc25_chr15_88128812_R | GTCTCGTGGGCTCGGAGAGCTCTGACCTGACCTGT | 59.8 | 0.11 |
| mm4_intergenic_Gm22483|Prelid2_chr18_41099430_F | TCGTCGGCAGCGTCTCCCATAGGAATTCAAGACAAGCT | 59.7 | 0.10 |
| mm4_intergenic_Gm22483|Prelid2_chr18_41099430_R | GTCTCGTGGGCTCGGTGCTGAGTATCTACTGCCTCTCT | 60.1 | 0.10 |
| mm3_intergenic_Cryge|Crygd_chr1_65053554_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_intergenic_Cryge|Crygd_chr1_65053554_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Runx1_chr16_92818221_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Runx1_chr16_92818221_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm22254|Gm8993_chr6_74532236_F | TCGTCGGCAGCGTCTCCACATTCAAGGAACTCTCTCC | 59.7 | 0.10 |
| mm4_intergenic_Gm22254|Gm8993_chr6_74532236_R | GTCTCGTGGGCTCGGACAGAACAAGAAGCAGAACTGT | 58.1 | 0.10 |
| mm4_intergenic_Il1rapl2|Gm25393_chrX_137767947_F | TCGTCGGCAGCGTCCCTAGTGCCAGAGAGCCCTA | 60.1 | 0.09 |
| mm4_intergenic_Il1rapl2|Gm25393_chrX_137767947_R | GTCTCGTGGGCTCGGGGGGCTAAAGGTAGAGTCATGA | 58.9 | 0.09 |
| mm4_intron_Tmem27_chrX_164104253_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Tmem27_chrX_164104253_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm7847|Gm23674_chr18_26343334_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm7847|Gm23674_chr18_26343334_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_4930435H24Rik|Qdpr_chr5_45352631_F | TCGTCGGCAGCGTCATCTTATGACCCTACTATGTGCAT | 57.0 | 0.09 |
| mm4_intergenic_4930435H24Rik|Qdpr_chr5_45352631_R | GTCTCGTGGGCTCGGTGCCCTTTCAGCTGAAGAGT | 59.2 | 0.09 |
| mm4_intergenic_Gm5432|Lpin1_chr12_16277297_F | TCGTCGGCAGCGTCCTGACACCCTGCACAGCATT | 60.8 | 0.08 |
| mm4_intergenic_Gm5432|Lpin1_chr12_16277297_R | GTCTCGTGGGCTCGGAAGTTCACCAGGCCTGACAC | 60.1 | 0.08 |
| mm4_intergenic_Gm13018|Prdm2_chr4_142902302_F | TCGTCGGCAGCGTCTCTCCAGTGTGAGAACGGAA | 58.3 | 0.08 |
| mm4_intergenic_Gm13018|Prdm2_chr4_142902302_R | GTCTCGTGGGCTCGGATGTGAACGCGTCTCCAGAC | 60.3 | 0.08 |
| mm4_intergenic_Smr3a|Smr2_chr5_88075525_F | TCGTCGGCAGCGTCAGCTGGGCATCACTATATTGCA | 59.8 | 0.08 |
| mm4_intergenic_Smr3a|Smr2_chr5_88075525_R | GTCTCGTGGGCTCGGCCCTAATAACCAATTTGTCTCCTGG | 59.4 | 0.08 |
| mm4_intergenic_Irx1|Rpl9-ps4_chr13_72217015_F | TCGTCGGCAGCGTCCTCTACAGGATGCTGGCCAG | 59.8 | 0.08 |
| mm4_intergenic_Irx1|Rpl9-ps4_chr13_72217015_R | GTCTCGTGGGCTCGGAGGGAATTATGAAGGCAACCCT | 59.4 | 0.08 |
| mm4_intergenic_Rdh14|Pgk1-rs7_chr12_10542962_F | TCGTCGGCAGCGTCCTCGTACAGGGGCCAAAGAT | 59.4 | 0.08 |
| mm4_intergenic_Rdh14|Pgk1-rs7_chr12_10542962_R | GTCTCGTGGGCTCGGTCAGGACCAGGTTTCCCTCT | 59.8 | 0.08 |
| mm4_intron_Pax7_chr4_139827795_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Pax7_chr4_139827795_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Agbl1_chr7_76581678_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Agbl1_chr7_76581678_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Ssxb9|Ssxb1_chrX_8411791_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ssxb9|Ssxb1_chrX_8411791_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ssxb8|Ssx9_chrX_8701370_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ssxb8|Ssx9_chrX_8701370_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ssxb6|Ssxb3_chrX_8558129_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ssxb6|Ssxb3_chrX_8558129_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ssxb10|Ssxb9_chrX_8366170_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ssxb10|Ssxb9_chrX_8366170_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Slc38a5|Ssxb10_chrX_8326618_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Slc38a5|Ssxb10_chrX_8326618_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm6592|Gm5751_chrX_8873217_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm6592|Gm5751_chrX_8873217_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Inppl1_chr7_101828916_F | TCGTCGGCAGCGTCCGTGAAGTCCACAGCTCCAA | 60.2 | 0.07 |
| mm4_intron_Inppl1_chr7_101828916_R | GTCTCGTGGGCTCGGGGAGCGGGAGAAGCATAAGG | 60.2 | 0.07 |
| mm4_intron_Sorbs1_chr19_40393336_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Sorbs1_chr19_40393336_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm24319|Psat1_chr19_15697949_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm24319|Psat1_chr19_15697949_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm23067|Gm26072_chr5_70240084_F | TCGTCGGCAGCGTCAGTTTGGTTGGTCCCTGTGC | 60.7 | 0.07 |
| mm4_intergenic_Gm23067|Gm26072_chr5_70240084_R | GTCTCGTGGGCTCGGAGGTAGAAACAAATTCCTCAGGACA | 59.9 | 0.07 |
| mm4_intergenic_Gm13579|Gm13581_chr2_61109683_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm13579|Gm13581_chr2_61109683_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Egfr_chr11_16870898_F | TCGTCGGCAGCGTCTAGCAGCCCATACACAGCAG | 59.8 | 0.07 |
| mm4_intron_Egfr_chr11_16870898_R | GTCTCGTGGGCTCGGAGCCATGATCTGTCACCACG | 60.1 | 0.07 |
| mm4_intergenic_Gm22813|Mpped2_chr2_106826913_F | TCGTCGGCAGCGTCCCAAATCCCAGCTCCTCTGT | 59.3 | 0.06 |
| mm4_intergenic_Gm22813|Mpped2_chr2_106826913_R | GTCTCGTGGGCTCGGTGTTACAAGAGCTATCAGGGCA | 59.1 | 0.06 |
| mm4_intergenic_Gm25169|Efnb2_chr8_8031146_F | TCGTCGGCAGCGTCTGGTTGCACAGAGTTACGTCA | 59.8 | 0.06 |
| mm4_intergenic_Gm25169|Efnb2_chr8_8031146_R | GTCTCGTGGGCTCGGAGGCTGGAGGCATAAACTGA | 58.7 | 0.06 |
| mm4_intergenic_Slc22a23|Pxdc1_chr13_34499968_F | TCGTCGGCAGCGTCTGAGCTTGGTCCTCAGATAGC | 59.2 | 0.06 |
| mm4_intergenic_Slc22a23|Pxdc1_chr13_34499968_R | GTCTCGTGGGCTCGGACTTCTTGTGAGACCAAAGCTG | 58.7 | 0.06 |
| mm4_intergenic_Slc1a1/AC163993.1|AC163993.1/Slc1a1_chr19_28896779_F | TCGTCGGCAGCGTCTCACATTGCTCTCCACAGCC | 60.3 | 0.06 |
| mm4_intergenic_Slc1a1/AC163993.1|AC163993.1/Slc1a1_chr19_28896779_R | GTCTCGTGGGCTCGGAGCTCCAGAGGCACCTCATA | 60.0 | 0.06 |
| mm4_intergenic_Scn9a|Scn7a_chr2_66670498_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Scn9a|Scn7a_chr2_66670498_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Mms22l_chr4_24588800_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Mms22l_chr4_24588800_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm4795|Prep_chr10_45049888_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm4795|Prep_chr10_45049888_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rcsd1|Creg1_chr1_165725577_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rcsd1|Creg1_chr1_165725577_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Vrk2|Gm12071_chr11_26666224_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Vrk2|Gm12071_chr11_26666224_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Pcdh9_chr14_93432672_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Pcdh9_chr14_93432672_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Nbas_chr12_13543321_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Nbas_chr12_13543321_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm15496|Kcnmb2_chr3_31599367_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm15496|Kcnmb2_chr3_31599367_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Actrt2|Gm13113_chr4_154818892_F | TCGTCGGCAGCGTCTCAGACATACGGCCTGATGC | 59.8 | 0.05 |
| mm4_intergenic_Actrt2|Gm13113_chr4_154818892_R | GTCTCGTGGGCTCGGTCCTTAGGGTCCCCATCAGG | 60.0 | 0.05 |
| mm4_intron_Stox1_chr10_62713802_F | TCGTCGGCAGCGTCATTACACCAAAACACGGCGG | 59.4 | 0.05 |
| mm4_intron_Stox1_chr10_62713802_R | GTCTCGTGGGCTCGGACTGTTATGGTGGTCGAGGC | 59.7 | 0.05 |
| mm4_intergenic_Nrg3|Gm10713_chr14_39901279_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Nrg3|Gm10713_chr14_39901279_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Macf1_chr4_123350937_F | TCGTCGGCAGCGTCGAGGCAGTGGTGGTCTTCTT | 59.6 | 0.04 |
| mm4_exon_Macf1_chr4_123350937_R | GTCTCGTGGGCTCGGTCGGCTTGCTCAGACACTTC | 60.3 | 0.04 |
| mm4_intron_Zdhhc24_chr19_4880962_F | TCGTCGGCAGCGTCTCTGATTTGATGGGGCGAGG | 59.8 | 0.04 |
| mm4_intron_Zdhhc24_chr19_4880962_R | GTCTCGTGGGCTCGGACGGAGGTGTCAGAGGAAAG | 59.0 | 0.04 |
| mm4_intergenic_Sh3rf1|Cbr4_chr8_61471945_F | TCGTCGGCAGCGTCAGGGGCAGAGAGATACGTAGA | 59.2 | 0.04 |
| mm4_intergenic_Sh3rf1|Cbr4_chr8_61471945_R | GTCTCGTGGGCTCGGAAGTAAGTGGCACCCCTGTG | 59.8 | 0.04 |
| mm3_intergenic_Zfyve20|Trh_chr6_92220552_F | TCGTCGGCAGCGTCGTCTTGGTCATGCTCACCCT | 59.6 | 0.04 |
| mm3_intergenic_Zfyve20|Trh_chr6_92220552_R | GTCTCGTGGGCTCGGGCACATGAAGACCTTGGGGA | 59.9 | 0.04 |
| mm4_intergenic_Sprr1b|Sprr3_chr3_92439617_F | TCGTCGGCAGCGTCGAGACTGGCAAGGTGAGCAT | 60.0 | 0.04 |
| mm4_intergenic_Sprr1b|Sprr3_chr3_92439617_R | GTCTCGTGGGCTCGGGGTTAGTGCTGTCCTCGCTT | 60.0 | 0.04 |
| mm3_intron_Gm15155_chrX_156186535_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intron_Gm15155_chrX_156186535_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_exon_Vta1_chr10_14684124_F | TCGTCGGCAGCGTCAAAGGCTGGCAGTGTAGAAG | 57.8 | 0.04 |
| mm3_exon_Vta1_chr10_14684124_R | GTCTCGTGGGCTCGGACGGGTACATGACTACATTTCAGT | 59.7 | 0.04 |
| mm4_intron_Dnhd1_chr7_105697872_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Dnhd1_chr7_105697872_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Bicc1_chr10_71077810_F | TCGTCGGCAGCGTCCAGCTCCTCCATGCCTCATT | 59.8 | 0.04 |
| mm4_intron_Bicc1_chr10_71077810_R | GTCTCGTGGGCTCGGCCTTTGAAGGCTCATGTTGGA | 58.4 | 0.04 |
| mm3_intron_Nos1_chr5_117787931_F | TCGTCGGCAGCGTCTGGAGAAAGAGAAGCTCAGCC | 59.7 | 0.03 |
| mm3_intron_Nos1_chr5_117787931_R | GTCTCGTGGGCTCGGGGGGCAGGAATCAGTGTTGA | 59.9 | 0.03 |
| mm4_intergenic_Gm22936|Gm11450_chr2_162775433_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm22936|Gm11450_chr2_162775433_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Smim14_chr5_65515784_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Smim14_chr5_65515784_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24221|Sstr4_chr2_148329945_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24221|Sstr4_chr2_148329945_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Jak1_chr4_101171424_F | TCGTCGGCAGCGTCCTGCTTCTGGCCACCCAATA | 60.0 | 0.03 |
| mm4_intron_Jak1_chr4_101171424_R | GTCTCGTGGGCTCGGCCTTCTTGCTCAGTGACCCC | 60.3 | 0.03 |
| mm4_intergenic_Chd9|Gm6658_chr8_90894917_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Chd9|Gm6658_chr8_90894917_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Phlda1|4933440J02Rik_chr10_111569682_F | TCGTCGGCAGCGTCTGGTACCCATCCCTTCCTGT | 59.8 | 0.02 |
| mm4_intergenic_Phlda1|4933440J02Rik_chr10_111569682_R | GTCTCGTGGGCTCGGGCACAGGTCAATGTTCCTCC | 58.8 | 0.02 |
| mm4_intergenic_Lrrtm3|Ctnna3_chr10_64133056_F | TCGTCGGCAGCGTCACAAGCTCTGCCTCATACCT | 58.4 | 0.02 |
| mm4_intergenic_Lrrtm3|Ctnna3_chr10_64133056_R | GTCTCGTGGGCTCGGACTCAAACACAGCCTAATCTCT | 57.1 | 0.02 |
| mm4_intergenic_Gm13211|Gm13254_chr2_7889249_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm13211|Gm13254_chr2_7889249_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Esrrg_chr1_187760595_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Esrrg_chr1_187760595_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_D19Bwg1357e|Gm24782_chr19_27598261_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_D19Bwg1357e|Gm24782_chr19_27598261_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Lmo1|Stk33_chr7_109211231_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Lmo1|Stk33_chr7_109211231_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm7665|Cdh2_chr18_16538650_F | TCGTCGGCAGCGTCACAGTCACCACAATATGATGGA | 57.1 | 0.02 |
| mm4_intergenic_Gm7665|Cdh2_chr18_16538650_R | GTCTCGTGGGCTCGGGCAAGCAGCAAACAATGAATGA | 58.9 | 0.02 |
| mm4_intergenic_Gm5544|Notch2_chr3_97989087_F | TCGTCGGCAGCGTCGAGGGGAGGGGATGGAGG | 60.1 | 0.01 |
| mm4_intergenic_Gm5544|Notch2_chr3_97989087_R | GTCTCGTGGGCTCGGATCAAGAGGGAGGGAGGGAG | 59.7 | 0.01 |
| mm3_intergenic_Gm25729|Gm21741_chrY_83680283_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm25729|Gm21741_chrY_83680283_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm25359|Gm21869_chrY_74915799_F | TCGTCGGCAGCGTCTTGTCAGGGGATGGTGAAGC | 59.9 | 0.01 |
| mm3_intergenic_Gm25359|Gm21869_chrY_74915799_R | GTCTCGTGGGCTCGGAGCTGTGTGAGTTGACATGTCA | 60.1 | 0.01 |
| mm3_intergenic_Gm24828|Gm21785_chrY_85418963_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm24828|Gm21785_chrY_85418963_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm23863|Gm20861_chrY_86330958_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm23863|Gm20861_chrY_86330958_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm23770|Gm21881_chrY_85779385_F | TCGTCGGCAGCGTCTTGTCAGGGGATGGTGAAGC | 59.9 | 0.01 |
| mm3_intergenic_Gm23770|Gm21881_chrY_85779385_R | GTCTCGTGGGCTCGGAGCTGTGTGAGTTGACATGTCA | 60.1 | 0.01 |
| mm3_intergenic_Gm23052|Gm20927_chrY_54933939_F | TCGTCGGCAGCGTCTTGTCAGGGGATGGTGAAGC | 59.9 | 0.01 |
| mm3_intergenic_Gm23052|Gm20927_chrY_54933939_R | GTCTCGTGGGCTCGGAGCTGTGTGAGTTGACATGTCA | 60.1 | 0.01 |
| mm3_intergenic_Gm22832|Gm21076_chrY_74754083_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm22832|Gm21076_chrY_74754083_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm22624|Gm20863_chrY_83817534_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm22624|Gm20863_chrY_83817534_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Msx1|Stx18_chr5_38003948_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Msx1|Stx18_chr5_38003948_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_RP23-448C3.1/Trpm3|Trpm3_chr19_22484909_F | TCGTCGGCAGCGTCACACAGACAGAAATGCACCT | 57.3 | 0.01 |
| mm4_intergenic_RP23-448C3.1/Trpm3|Trpm3_chr19_22484909_R | GTCTCGTGGGCTCGGGCCACATCTGCCTACACACT | 60.0 | 0.01 |
| mm3_intron_Ulk2_chr11_61814530_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ulk2_chr11_61814530_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Smr2|Gm11116_chr5_88109115_F | TCGTCGGCAGCGTCAGCATCCACTGTTGTCCTCA | 58.9 | 0.01 |
| mm3_intergenic_Smr2|Gm11116_chr5_88109115_R | GTCTCGTGGGCTCGGTCCTAATGACCATTTGTCTTCTGG | 58.5 | 0.01 |
| mm4_intergenic_Gm12162|Gm22284_chr11_45532797_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm12162|Gm22284_chr11_45532797_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fam198b|Gm6706_chr3_79952242_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fam198b|Gm6706_chr3_79952242_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm25684|Gm9966_chr7_95480949_F | TCGTCGGCAGCGTCTGAGCAAGCAGTGAGATGAG | 57.6 | 0.01 |
| mm4_intergenic_Gm25684|Gm9966_chr7_95480949_R | GTCTCGTGGGCTCGGAGACATGGCTGCTCCTACAG | 59.1 | 0.01 |
| mm3_exon_Cdr1_chrX_61183680_F | TCGTCGGCAGCGTCTCAACGTCTTCCACAAAATTCAGG | 59.9 | 0.00 |
| mm3_exon_Cdr1_chrX_61183680_R | GTCTCGTGGGCTCGGGATGAGCTGGAAGACCTGGA | 58.8 | 0.00 |
| mm4_intergenic_Ndst4|Ugt8a_chr3_125827361_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ndst4|Ugt8a_chr3_125827361_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dnah17_chr11_118033339_F | TCGTCGGCAGCGTCGCCTGATCACATGACTGCCT | 60.1 | 0.00 |
| mm4_intron_Dnah17_chr11_118033339_R | GTCTCGTGGGCTCGGTGACAGACAGGTGGTGATGC | 59.9 | 0.00 |
| mm4_intron_Tacc2_chr7_130725742_F | TCGTCGGCAGCGTCGCTTGCATAGTGATTGCAGGG | 59.9 | 0.00 |
| mm4_intron_Tacc2_chr7_130725742_R | GTCTCGTGGGCTCGGAGGCAAGGAAAGATGAGGCC | 60.0 | 0.00 |
| mm4_intron_Ptprn2_chr12_117165057_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ptprn2_chr12_117165057_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nid2_chr14_19800230_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nid2_chr14_19800230_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_9830107B12Rik_chr17_48130329_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_9830107B12Rik_chr17_48130329_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Grxcr1|Gm23605_chr5_68405776_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Grxcr1|Gm23605_chr5_68405776_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8177|Tm4sf1_chr3_57271525_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8177|Tm4sf1_chr3_57271525_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm4922|Perp_chr10_18842006_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm4922|Perp_chr10_18842006_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22527|Rnf144a_chr12_25934938_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22527|Rnf144a_chr12_25934938_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22254|Gm8993_chr6_74803399_F | TCGTCGGCAGCGTCGCCCTACAGGAAACATTGCC | 59.1 | 0.00 |
| mm4_intergenic_Gm22254|Gm8993_chr6_74803399_R | GTCTCGTGGGCTCGGTGCTGGCACTTGTATTGATATACA | 58.3 | 0.00 |
| mm4_intergenic_Diras2|Syk_chr13_52536574_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Diras2|Syk_chr13_52536574_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Timp2_chr11_118303519_F | TCGTCGGCAGCGTCGAAGGGGTATGGCAGGGAAC | 60.1 | 0.00 |
| mm4_exon_Timp2_chr11_118303519_R | GTCTCGTGGGCTCGGACGCTAGTGTGATTCTGCCC | 60.1 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm3_intergenic_Cd274|Pdcd1lg2_chr19_29400401 |
ACCCTTGTAAGTGGATCGAGTCCTTTCTGAATTCTAGATCAATAATGTTTAATTTGTTCCAAAAGTCGTCATCATTTCAT GATATAGCCTGGAAAGACACGGTCATGTTTCTGGGTGGCCTGATCCAAAGCTTTCAGC |
| mm4_intron_Rnf152_chr1_105304855 |
ACCACTTCTGCAATCCCAGTTGATCTCTGACATCATCTCCCCCTTCCATAAACATAACAGTTTCTCACTGGCCCCCACTT CATTGAAAAAAAATAAATACTCCCCTTCCCCCTTCCTTGGACCATTAGT |
| mm4_intergenic_Sphkap|Gm25754_chr1_83586993 |
CAGTGGTTCCAGGAAGTCCATGAGAAAATCAGAGGGATTCATAAGGAAAGCCAGGTTTCCCCCCAGAAATATATCCATGT ATCTATTTACAGTCCATTGAGACTCCTTGTCTTTGTGGAGCCT |
| mm4_intron_Bcor_chrX_12096525 |
TTTCTTGGTCAGAGGAGCCGAGTGGCTCACTTGCATGGGCATGTTTCTGGAAGGCTCTAGGTGTCCTAGCCTTCCCGAGG GCAGCAGAAAATCATCCACAGGAGGTGACAGCAGGAGCCCTTAG |
| mm3_intron_Arhgap15_chr2_44384698 |
TCTCTGGTAACTCACTGATACTCTAAAAATATGAGACTCCCTTCCAGAAACGTAGCCATGCCAACAATACTCACAGGTAC AAATGTTCTCCATTTAAAGCAGGAGGAAAAGAAAAATGTGAAGCGGGATGTCTTGGA |
| mm4_exon_Inpp5d_chr1_87667917 |
TGTCATGTCACCACCTGAGCTGCCTCCCAGAAACATTCCTATGTCTGCCGGGCCCAGCGAGGCCAAGGACCTTCCTCTTG CAACAGA |
| mm4_intergenic_Csnka2ip|4930453N24Rik_chr16_64553642 |
CAGCCACCAAACCTAGATCCTTGTGTGTACTAGACAAGCCCTCTAGAAACTTAGCTATGTCCACATTTGGTGATTTTTCT AACGAGAAAAGAAATATAGAAGCAAGCTGTCTATTCAGATAGCACAGCACTTCTCTGGTT |
| mm3_intron_Greb1_chr12_16691060 |
GGATGGCGTGTGGAACCTAATCACTGTCAATCTACAGCTTTTGGGGGACCTCTACTATATCTAAAAAGCTTCTGACATGG CTATATTTCAGGATGGCTCTAATAGGACAAGGTCATGCACTGAGA |
| mm4_intron_2310061I04Rik_chr17_35893792 |
GCTTGAGCCTAATAATTTTGGGGGATGTACCATCCAGAAACTTAATCACGTACTCTACCTAGAGTTAAATTCAGGACACA GTGTTTTTGCTCACTGGTTTCTGAAGTGAGTTCATGCATGCCAGACTGG |
| mm4_intergenic_Slc24a3|Gm22390_chr2_145449713 |
ATCCTTGTTGCTGGGCTCTCCATGTCAACCATTCAGAAAGAGCATGGACTGCTTTTTCATGTGGCTGGCACAAGTTCACT TGGGTGTCTTGGGCTACATGGTAATGTTTCCAGAGGGCTTCTTCACGCTCAGACCTGG |
| mm4_intron_Msra_chr14_64268451 |
TAACTCTGTCCGTGAGCTGCTGGCAGGGTGTGCTTCCCATCGTTTAGGACAGCCATCCAGAAACATAATTACGTGATTAA GTGCTGTGTCCTCCCAGGAAGTGTCAGG |
| mm4_intergenic_Gm16203|Sgcz_chr8_38485113 |
TCTTCCTGCATGATGAAGACCATCCCCCTCACAGAAACATGTCCATGTCCACCTTGTGCTGTACACCCATGCCAGGGGCA CAGAACTGAGAAGG |
| mm4_intergenic_C1galt1c1|Ap3s1-ps1_chrX_38673914 |
CTCTCCCTGGCTTTGGGTTTGCTTGAAGATGCTCAGAGCCTCCCCAGAGTTATGTTTCTGGAAGGAGGCTCTCAGGATCT GACTGAATAGTGGAATGATGACCCCGTGT |
| mm4_intergenic_Gm8993|Gm9001_chr6_75631226 | AGGACAGATGGCTACTGCAAAGACATAGCTATGTTTCATGAGGGAGAACATGTTCAGGTAACTGAAATGTGGCA |
| mm4_exon_Taf1d_chr9_15311856 |
TTTTCGTTGCTTGATTTCAGAGTAAGAAATACTATAAGGATTATTTTACTACTATAGTAAACATGATTGTGATTCTGGAA GGAAAATGCTAACAATCCTATACATGTCTAGATTCAAGACCCCAGCCTCG |
| mm4_intron_Zranb3_chr1_128003766 | TCACTTGAATGGAAGAATGGGAATGAGACAGTTATGTATCTGGAGGGGAACAGAGATGCACGGAGGT |
| mm4_intergenic_Casp12|Pdgfd_chr9_5770906 |
ACCGCAGACACTTTATAGGAGAAAGCCATGATTATGTTACTGTAAGGATAATGTTCTTGTAGGATTTCCTTTTTCATAAA TCTTGAATGTATTTTGAATCATAAAATATTTCTATGCAAAGACCTTTGGTGATTGT |
| mm4_intergenic_Gm15577|Negr1_chr3_156977288 |
GCATACTTCCCTGGAGCTGGGATTCTTGTCAGTGTCATGTTTCTGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNCTTTCTGAAAGGTTTTAAGACAGATCTGAGCTGCCTGC |
| mm4_intergenic_D730003I15Rik|Nenf_chr1_191241425 |
GCTCTGACTTGGTAGCTAGCTCTTCTAAGTTCTCTACATTGCTTTGGAAGTTTTAGCCTATAAACTCAGGAGGAAGATCT AAGAAAAAGCCCTCCATCCAGAAACAAAGCCAACTCAGTCGTAGGTACTCCAGCATCTGC |
| mm3_intergenic_Nlgn1|Gm24250_chr3_25541165 |
AGCTGTGTGAGTTGACATGTCATTGAACCTTCCAGAAAAAAAACCATGCCAGTATGATTTTCCCCATATCATCTAATGAA AAGTTCGAGAGCACATTTTAACTATGTATTGTTCACAAATGCTTCACCATCCCCTGACAA |
| mm4_intergenic_Gm22016|Cdc73_chr1_141952495 |
GCACATGATTTGCAATGCACATACACCAATGTATTCAACTCACCTCCCATAAAAATAACCATGTTTTAAATAAGGAAATT TTGTCAATGCAAATTCCAACATATGT |
| mm4_intergenic_Nrcam|Stxbp6_chr12_44670725 |
CTCATGACCTCTGCCACTCCACCTGTTCTACAAACTGCACAGGACATACTGATGTATCTGGAAGGATGTCCAAAGGTTAA AATTAATTATCTTCTGGTTCCTGAGGACA |
| mm4_intron_Ctnna2_chr6_76989781 |
CCCATGCATTCGACCTCCAAATGCTTTCCAATTTTTCATTAATTTTTATACCTTCAGGAATCATATCCATGTCTTAAGAA GAACTTACATTCAAAATGAAGCAAAGTAGCAACTCAGAGGTCCA |
| mm4_intergenic_Gm11146|Mir125b-2_chr16_77622019 |
TCAGGTGAATTCTTTGTTACTTCCAGTTTAGTATACTCAATCAAAAGCTAGAAACCATATTTCTAAAATGGTTATGTTTC TTCAAGGCATTTTGCCCTGTATTGTGCCTCTG |
| mm4_intron_Klhl32_chr4_24623792 |
ACATATGTACTCATACACAGACACACCACACAGATACATAACCATGTGGAAAATGAAACATGTCCAGAGAGATGGTTTAG TGGTACAAGTGCTTGTGCTACCAGGCCACAT |
| mm4_intergenic_Gm22939|Cntnap2_chr6_44992904 |
AGACTGATGCAAAATTTACCCTTGAATTAAAAAATTGCTTCCTCTTTTACATTTTTTTTTGCTGTATTGTGAAATATACC TTGAAGAAATATATCCATGTCAGGACCTTATTACTATGGAGACCA |
| mm4_intergenic_AC121988.1|Gm25740_chr10_46198704 |
GCTTGTACATTTCCCCAGTGGATGATTTTTATTAGTGTCAAAAGATAAAGCGTATATGCATGCACACATGCTGATGTTTC TGAAGGGCATTGTGATGAAAGATTGGAATGCCTTTTGTTGTCTTCCTGA |
| mm4_intron_Gm14461_chr2_78261986 |
AATGGCAACCAGGAACCCTTATTCTGGAACTGGCTATGTTTCTTGATGGACATCTCAAACAAGAACATCAGATTCAACAC GTGGACTATGTTTATTTAGGGACACAATCCTGAAAAGCCTTGAATTAAATTGCACGGG |
| mm3_intergenic_Plcl1|Hsfy2_chr1_56483951 |
TGGCCTCCAACACATTGACTCACAATGCCACAGACTGTGAATAGCTTTCCATGGCTATGTTTCTGGATAGAACCATAAAA TATTTTCATAGATGTCATAAGGGGAAGATTTTCTATCTGCACCCAGACAGACAAG |
| mm4_intergenic_Gm5446|Elmo1_chr13_20001161 |
GCTTCCTGAAAATGCCCCTGTTTGTCTCATAAATAAGAACCATTCAGAAACAAAACCAGTTCTGTATTTTCTACAGGACT TTCTGATAGGTTTCTCCAAGGAGGAAGAAGCCTATCC |
| mm4_intron_Ube2e2_chr14_18614306 |
GGTGGAACCATCTGAGCTGTGAGATTTTCTTCATCTTTGCCATCCCAAAGGTTCAGATATTACAGCTGGACTGGGCTTCT GCCCTCCAGAAACCTTACCCTGGCAATTAAAGTGAAGTGGGCAGGCA |
| mm4_intergenic_Ifng|Dyrk2/4932442E05Rik_chr10_118485786 |
TGCTGAATCACGTGTTGAGCTGTATATACAAAGGTAAGAAAATGTCTTTGGTCTGACATGGCTTTGTATTTGGATGGCTC ACAAATACAGACACATAGAGTCCCTACAGACACCACACCA |
| mm4_intron_0610040F04Rik_chr6_108613255 |
GCTGGTCAAAACATAAGTGCCAGCCTTCAAGAAACAGTTCCATGTCCTTTGTTAACCTCCATGAGAGTTCTCTGCAATGC CCCCAACCCCACCCTATTCAC |
| mm4_intergenic_Gm24633|Gm25568_chr1_19875326 | ACAGGTCAGGGGACATCTCAGTGCACATGGTTCTGTATATGGAAGGTCCTGTGTTTGATCACCAACA |
| mm4_intergenic_Leo1|Tmod3_chr9_75481547 |
AGGAGGCAGAAGCGGCAGCAGCGTCCAGGTCGGAGTTCCACCTTCCAGAAGCCTAACCTTGTTGTTNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNGCAAGGCCTCCATCGAGGTTGCCACTAAAAGCCGT |
| mm4_intergenic_Gm24477|Trp53rk_chr2_166773441 |
GCTGGTCTAGGATGCGAGTCTTGTTATTGTCCTACGATCAGTAAAGGACATGGGGCCGGCCATTTTTTCTGTATCTTCTG GATGTATTTCAGAGATGGGAAGGTTTCTGGAAGGTGGGATAGCCTGCAGTCTCCT |
| mm4_intron_Fbrsl1_chr5_110428136 |
GCAGACACCTCCTTTCACCAAGACATGCTGCTCCAAGGCCCTGAGACATTATTCTGTTTCTGGTCGGACCTCACTTCCTT TGCCAAGGTTTGGTTGCTCCCTCTGTCATATGCCC |
| mm4_intergenic_Gm25976|Acot10_chr15_20538753 |
ACATCTCCTAAGTGTCACCTACCCCCTCCTAAAACAAAACCATGTTTTATTTATTCCTTGCATGTATTATTTATTCCAAT GGTTTTATAACAATTACATCATCAGTCACATTAGGAAAGTACACA |
| mm4_intergenic_Smr3a|Smr2_chr5_88026693 |
AAATGAAGAGCTGAACGGCATTATAAAGCATCTACTGTTGTCATCATTGTGATTACCATACAACCTACTATGTCATTTGT ATAAAAGTAATCCTTTCAGAAACCTAACCTTGTTCCAGAAGGCTAAGTGGTCATT |
| mm4_intron_E130309F12Rik_chr4_49078477 |
TCACCTTCAGAAAGCCTTCCAGATCGATTTCATAGCCCCCAGTCCTGTCACCACAGGATCCATTTATTCTTACAGCTCCT TCCAGGATCATTACCATGACTTCAGTGTCCCCTGTCATTCCGCTACCACACC |
| mm4_intergenic_Gm26913|Gm4076_chr13_84861963 |
CCTCCTTTAGTTTGCGCCTCAAATCTTTAGAATATGTTTTCCCTACTTGAGGAAGTTATTAGATGGTGAGGTTTCTGGAG GGCACCAGAGTCCTTGTGTGGTTATCAATTGCCCTGAACTGCTCCTTT |
| mm4_intergenic_Gm11115|Gm7714_chr5_88254667 |
GCACGCACTTGCAGTCATTATAACTACTATACCATCTACTGTGTTATTTGCATACAATTAATCCTTCCAGAAACCTAAGC TTGTTCCAGGAAGCCAACTGGTTATCAGG |
| mm3_intergenic_Gm23558|Galc_chr12_97974205 |
ACGAATGCAACGGTAGTTTGCGAATTTATTTTCCGCAGATGAAATCGATATGTTTCTGGAAAGGACTTTACCCTGCGTTT ATTCACTGGGGAGCATTTGTGTCCT |
| mm4_intergenic_Gm23526|Grik4_chr9_42933361 |
TATGGCAAGCACTCCAAGGGAGAAAGGGCATGGGGCTGTTTCTGGAAGGGACTAGGATAAGATAGGGGAAGAGCATCAGG AAAGG |
| mm4_intergenic_Gm7729|Gm24246_chr18_28156554 |
CCAGTTCCCTTGTCTCTGCCTTGGAACCATTCAGAAACAGAACTTTGTCTTGGAAAGGAAGTACGATTTTCAGAGACATT AGACTCATTTGGAGCAGGGGCCCAGTTTCTTCAGCCGAGCACCTT |
| mm4_intron_Abhd12b_chr12_70163687 |
GTGAAGGTGTTCTGGCAAACACATTCTCGTTAAATAAGCAGTTCCCATATAGAATGACTTGGGTCTGTTTCTGAACGGGA GGGAATAATAATTCTTCTGAAATGTCCATCTCAATTTCAATGAAGCCACTGGTTTCT |
| mm3_intergenic_mmu-mir-6393|Zdhhc25_chr15_88128812 |
GGGTTCACCTCCCTGTGTTCAATGCCTTCCAATAACATCACCATGTCATGCCAGCAAGGGTTTAATTAACAGGTCAGGTC AGAGCTCT |
| mm4_intergenic_Gm22483|Prelid2_chr18_41099430 |
TCCCATAGGAATTCAAGACAAGCTAAATGCTAAAAAATTTTCTGTTTATTGTGTAAGGTAAAGAATGATGTACCACAGCC ATGTTTCTGTTTCTGAATGGGTGGTAGTAGCCAAGAGAGGCAGTAGATACTCAGCA |
| mm4_intergenic_Gm22254|Gm8993_chr6_74532236 |
TCCACATTCAAGGAACTCTCTCCTAATTGTTCTCAAGAGACATTATTATGTTTCTGTCAGGTTAATAGTTTAGAGTATAC AGTTCTGCTTCTTGTTCTGT |
| mm4_intergenic_Il1rapl2|Gm25393_chrX_137767947 |
CCTAGTGCCAGAGAGCCCTATACCACAGACATGGTTATTAATCTGGTTGGTTTTGCTCTGATTCATGACTCTACCTTTAG CCCC |
| mm4_intergenic_4930435H24Rik|Qdpr_chr5_45352631 |
ATCTTATGACCCTACTATGTGCATATTTAATTATAAATGCTCCAGCCCTTCCAAAAACATAAGGAAGTCCACAATGTTAT CTTCTCAGACAACATTAGTCACTCTTCAGCTGAAAGGGCA |
| mm4_intergenic_Gm5432|Lpin1_chr12_16277297 |
CTGACACCCTGCACAGCATTGCTTGGCCCAGCACCAGGTCCCCTTCCTGGAACAAAAGCATGTCCTGAGCAGCCCTCGCT GTCAGTGTCAGGCCTGGTGAACTT |
| mm4_intergenic_Gm13018|Prdm2_chr4_142902302 |
TCTCCAGTGTGAGAACGGAATACCACAAATATAATGGAACATATGGTTCTGTTTCAGGAGGGTTGTGATCGGTCTGGAGA CGCGTTCACAT |
| mm4_intergenic_Smr3a|Smr2_chr5_88075525 |
AGCTGGGCATCACTATATTGCATGTACTTTTCCTGTCATTATGACTACTGTACCATCTACTGTGATAATTGCATACAATT AATCCTTCGAGAAACCTAACCTTGTTCCAGGAGACAAATTGGTTATTAGGG |
| mm4_intergenic_Irx1|Rpl9-ps4_chr13_72217015 |
CTCTACAGGATGCTGGCCAGAAATAAAAAGTTCTGCCAAGTCAAATTAGGAAAGGAGATGCAGCTGCCAGGGTGATGTTC CTGGAGGGTCTTAGAGGGTTGCCTTCATAATTCCCT |
| mm4_intergenic_Rdh14|Pgk1-rs7_chr12_10542962 |
CTCGTACAGGGGCCAAAGATATCCCAAGGGATGAGTTAGAAATGCTTATGTTTTTGCATGGTTGAATGAATCTAGAGTAG AATATCCCAAGAGAAACAGGTGGTTTGGAGATAGTTTCTAAGAGGGAAACCTGGTCCTGA |
| mm4_intron_Inppl1_chr7_101828916 |
CGTGAAGTCCACAGCTCCAAAGACCCAGGCATCCTCCACACCCCAGAACCATCCAGGAACATAGCCAGGCCCTCACTCAC TAAATCGAAGGAAGACCTTATGCTTCTCCCGCTCC |
| mm4_intergenic_Gm23067|Gm26072_chr5_70240084 |
AGTTTGGTTGGTCCCTGTGCACAAACCCTCCACAAACATAACCCTGAAGCATTTTAATCTGTCCTGAGGAATTTGTTTCT ACCT |
| mm4_intron_Egfr_chr11_16870898 |
TAGCAGCCCATACACAGCAGGACATGAGGATGTTTGTGGAAGGTTAGGAGCACCTGCTGTAGCCTTCAACACCTTCTTTT CATTGCCTCTTCCTCAGGAAACTACGTGGTGACAGATCATGGCT |
| mm4_intergenic_Gm22813|Mpped2_chr2_106826913 |
CCAAATCCCAGCTCCTCTGTTTATAGAGAATTCCTGTTTTACCTGACCAATAAGTCATCCAGTGTATAGAGAGTATGTGT GACTTATTTCACGCCCTCCTGAACCATAACAATGACTTGCCCTGATAGCTCTTGTAACA |
| mm4_intergenic_Gm25169|Efnb2_chr8_8031146 |
TGGTTGCACAGAGTTACGTCATAATTTTTTTAAAAATCCAATTAATACAGCTGCCATAGAAAAACATAAGCATGTCACTG TCTCATTTAATAGTAACATTCTACTCAGTGATAACAAATCAGTTTATGCCTCCAGCCT |
| mm4_intergenic_Slc22a23|Pxdc1_chr13_34499968 |
TGAGCTTGGTCCTCAGATAGCTTCCTAAAGGTCTTTAATTCTCTTGTGAATCCATTCACAGAGTATATAATACTAGACAT GGATATTCTCCTGGAGGGCAGCTTTGGTCTCACAAGAAGT |
| mm4_intergenic_Slc1a1/AC163993.1|AC163993.1/Slc1a1_chr19_28896779 | TCACATTGCTCTCCACAGCCCCCACCAGAAACAGAACCACCTCTATTTATGAGGTGCCTCTGGAGCT |
| mm4_intergenic_Actrt2|Gm13113_chr4_154818892 |
TCAGACATACGGCCTGATGCCTTCGTGCCCATGTGACCTTGATGTGCCTAACTGCCCTGCAGGAACATAACCCTGACCCT GATGGGGACCCTAAGGA |
| mm4_intron_Stox1_chr10_62713802 |
ATTACACCAAAACACGGCGGCCGTATTTTATACAAACACGACCCATGCACCATATACAAACATAACCATGGCAATGCTTG TTGCACAAGGCCTCGACCACCATAACAGT |
| mm4_exon_Macf1_chr4_123350937 |
GAGGCAGTGGTGGTCTTCTTAGACATGGTTGGGATTTTGGACGGTTTGGTGAGCCCTCGTCTGGAGCTGCCCTGGCCCCC GGCAGCACTGCTCTCTGAAGTGTCTGAGCAAGCCGA |
| mm4_intron_Zdhhc24_chr19_4880962 |
TCTGATTTGATGGGGCGAGGGGAGCCAGTGAAAGTTACAGGCAGGGAAGTCCTTTCCTTTGGAAATTGGGAGGAGACTTG GTTGTGTTACTGGCTGGCTTCTGATGGTGTGAGTACTCCTCTTTCCTCTGACACCTCCGT |
| mm4_intergenic_Sh3rf1|Cbr4_chr8_61471945 |
AGGGGCAGAGAGATACGTAGAGAGATGGCTCTGTTCCTGGAAGGTAGCCAATCACCAGCTGCAGTTCCCACAGGGGTGCC ACTTACTT |
| mm3_intergenic_Zfyve20|Trh_chr6_92220552 |
GTCTTGGTCATGCTCACCCTAATTTCTCCCCTAATTCTTTCCAGAAACACCACCATCTCCTCCCCAAGGTCTTCATGTGC |
| mm4_intergenic_Sprr1b|Sprr3_chr3_92439617 |
GAGACTGGCAAGGTGAGCATCCTTTCTCAAACTTAACCATGTCTTAAAGGATGAAGCAGCTGTGTTAACACGGGATTTCT CCTTCAGAGAAAGAAGGAAAACTTTCTCTTATAAGCGAGGACAGCACTAACC |
| mm3_exon_Vta1_chr10_14684124 |
AAAGGCTGGCAGTGTAGAAGGACTTGATCATGTTTCTGGAAGAGAAAGGGTATCCTAATTTAAATTAAANNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNATACACTGAAATGTAGTCATGTACCCGT |
| mm4_intron_Bicc1_chr10_71077810 |
CAGCTCCTCCATGCCTCATTACTCTGCAGAAGAGCCATGGTTCTGTTTCTGTCTGGTCCAAACACTGACATGTTCTTTCC AGTAAACTTAGACATTTCCCTTTTATTACATTGATTTTTCCAACATGAGCCTTCAAAGG |
| mm3_intron_Nos1_chr5_117787931 | TGGAGAAAGAGAAGCTCAGCCTGGGACTTGGCTATGTTTCTGGCCAGTGAGTCCTCTCAACACTGATTCCTGCCCC |
| mm4_intron_Jak1_chr4_101171424 |
CTGCTTCTGGCCACCCAATACCTGCCATCCACAAAAACAACCATGTTTACAATGGGATCAGGCAATGTAATATTAGGGGT CACTGAGCAAGAAGG |
| mm4_intergenic_Phlda1|4933440J02Rik_chr10_111569682 |
TGGTACCCATCCCTTCCTGTACTCTGCATTTACCCATCCACAAAGGTAACCTTGTCTTTGTTTGAAAGCTCTCTCCCTAG CTATCCTGATTCCATTAGCAGCTTGTTTCTAAGGAGGAACATTGACCTGTGC |
| mm4_intergenic_Lrrtm3|Ctnna3_chr10_64133056 |
ACAAGCTCTGCCTCATACCTATTTTTCAGACCTCCTTCCAAATCCCTAGGTCATCAAAGTCCTTGAGCATAGTTATCATG TCTGACATGGTTATCTTTGTTCAGGGGAGAAGAGATTAGGCTGTGTTTGAGT |
| mm4_intergenic_Gm7665|Cdh2_chr18_16538650 |
ACAGTCACCACAATATGATGGATAAAGGAACTTATGATGGTTTTGTTTCTGGAGGACATATAAAGTTGCTACCAAATCTT CCATTAAAAAAGCATATTTAACAATAACTAATCATTCATTGTTTGCTGCTTGC |
| mm4_intergenic_Gm5544|Notch2_chr3_97989087 |
GAGGGGAGGGGATGGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGTTTCTTTC TTTTTCAGCCCTCCAAAGAAATAAACATGTCTGTCTCCCTCCCTCCCTCTTGAT |
| mm3_intergenic_Gm25359|Gm21869_chrY_74915799 |
TTGTCAGGGGATGGTGAAGCATTTGTGAACAATACATAGTTAAAATGTGCTCGTGAACTTTTCATTAGATGATATGGGGA AAATCATACTGGCATGGTTTTTTTTCTGGAAGATTCAATGACATGTCAACTCACACAGCT |
| mm3_intergenic_Gm23770|Gm21881_chrY_85779385 |
TTGTCAGGGGATGGTGAAGCATTTGTGAACAATACATAGTTAAAATGTGCTCGTGAACTTTTCATTAGATGATATGGGGA AAATCATACTGGCATGGTTTTTTTTCTGGAAGATTCAATGACATGTCAACTCACACAGCT |
| mm3_intergenic_Gm23052|Gm20927_chrY_54933939 |
TTGTCAGGGGATGGTGAAGCATTTGTGAACAATACATAGTTAAAATGTGCTCGTGAACTTTTCATTAGATGATATGGGGA AAATCATACTGGCATGGTTTTTTTTCTGGAAGATTCAATGACATGTCAACTCACACAGCT |
| mm4_intergenic_RP23-448C3.1/Trpm3|Trpm3_chr19_22484909 |
ACACAGACAGAAATGCACCTTTTCAACATTCTTTCCCACATAGTTTACAAGCATCAGTTGAAATGGTTATGTCTGTGCAG GGACAGAAGGCTGTGGTAGGAAAAATTAGATCATGAGTGTGTAGGCAGATGTGGC |
| mm3_intergenic_Smr2|Gm11116_chr5_88109115 |
AGCATCCACTGTTGTCCTCATTTTGATTACCATATCACCTACTGTACTATTTGTATGAAATGGATTCTTCCAGAAACCTA ACCTTGTTCCAGAAGACAAATGGTCATTAGGA |
| mm4_intergenic_Gm25684|Gm9966_chr7_95480949 |
TGAGCAAGCAGTGAGATGAGCCATCCAGCAAAATAACCATGAGAGTGGCCAGGAACTTTGGNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTAGGAGCAGCCATGTCT |
| mm3_exon_Cdr1_chrX_61183680 |
TCAACGTCTTCCACAAAATTCAGGTCTTCCAGAAAAATATCCAGGTCTTCCAACCAGTCTATGTCTTCCAGAAAAATCCA GGTCTTCCAGCTCATC |
| mm4_intron_Dnah17_chr11_118033339 |
GCCTGATCACATGACTGCCTTGTTCAGGGTGGTATCAGAGGACGTGGTTATGGAGCTGGAGGGTGGGGACAGCATCACCA CCTGTCTGTCA |
| mm4_intron_Tacc2_chr7_130725742 | GCTTGCATAGTGATTGCAGGGGACATGCTTATGTGGATGGATGGGTTTGTGGCCTCATCTTTCCTTGCCT |
| mm4_intergenic_Gm22254|Gm8993_chr6_74803399 |
GCCCTACAGGAAACATTGCCATTATCTGTATTTCTTTTTATATTGTATATGTATGCCTGTGGACATGTTTATGTGTATGG GTGGTGGTGGTGGTAGATATATGTATATCAATACAAGTGCCAGCA |
| mm4_exon_Timp2_chr11_118303519 |
GAAGGGGTATGGCAGGGAACCTGGCCCGCCTGTCCCTCCAGACCCACTACCATGTCTAGGGAAAATAGGGGAGGGGGCAG AATCACACTAGCGT |