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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313820_F | TCGTCGGCAGCGTCAGGGAGCCTGGGATTAGGAG | 60.1 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313820_R | GTCTCGTGGGCTCGGCATGTCCTTTCGGCTCTCCA | 59.7 | 1.00 |
| mm4_intron_Adap1_chr5_139287250_F | Primer3: not found at this Tm | N.d. | 0.69 |
| mm4_intron_Adap1_chr5_139287250_R | Primer3: not found at this Tm | N.d. | 0.69 |
| mm4_exon_Zbtb39/Gpr182_chr10_127742015_F | Primer3: not found at this Tm | N.d. | 0.62 |
| mm4_exon_Zbtb39/Gpr182_chr10_127742015_R | Primer3: not found at this Tm | N.d. | 0.62 |
| mm3_intron_Sufu_chr19_46477777_F | TCGTCGGCAGCGTCAGTTGCTGTGCTAGGAGCTG | 60.0 | 0.60 |
| mm3_intron_Sufu_chr19_46477777_R | GTCTCGTGGGCTCGGCTTGGTGATCAAGGGTGCGT | 60.6 | 0.60 |
| mm4_intergenic_Gm21614|Gm23249_chr12_93537839_F | TCGTCGGCAGCGTCACACAGCTCTTGTTTCTGACA | 57.7 | 0.52 |
| mm4_intergenic_Gm21614|Gm23249_chr12_93537839_R | GTCTCGTGGGCTCGGACTGAATTTAACAGCACTTTCCACT | 59.4 | 0.52 |
| mm4_intron_Acpp_chr9_104310397_F | TCGTCGGCAGCGTCTGGTCAGCCAGCCTTGTTAG | 59.9 | 0.50 |
| mm4_intron_Acpp_chr9_104310397_R | GTCTCGTGGGCTCGGAGACAAACTGGAAGTGGCAGT | 59.7 | 0.50 |
| mm4_intron_Krt79_chr15_101931687_F | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intron_Krt79_chr15_101931687_R | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intron_Tmem150c_chr5_100145502_F | Primer3: not found at this Tm | N.d. | 0.47 |
| mm4_intron_Tmem150c_chr5_100145502_R | Primer3: not found at this Tm | N.d. | 0.47 |
| mm4_intergenic_Mcf2|Atp11c_chrX_60211239_F | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_Mcf2|Atp11c_chrX_60211239_R | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_4930564D02Rik|1700095B22Rik_chr3_105317211_F | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_4930564D02Rik|1700095B22Rik_chr3_105317211_R | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intron_Tesc_chr5_118039473_F | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intron_Tesc_chr5_118039473_R | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intron_Pard3_chr8_127154993_F | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intron_Pard3_chr8_127154993_R | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intergenic_Igfbp5|Tnp1_chr1_72877283_F | TCGTCGGCAGCGTCAGTCCATTCTCTCTGCCCTCT | 59.9 | 0.42 |
| mm4_intergenic_Igfbp5|Tnp1_chr1_72877283_R | GTCTCGTGGGCTCGGTCTCTGAGAGTGCGACCAGA | 59.9 | 0.42 |
| mm4_intergenic_Otol1|Gm23477_chr3_70052788_F | Primer3: not found at this Tm | N.d. | 0.42 |
| mm4_intergenic_Otol1|Gm23477_chr3_70052788_R | Primer3: not found at this Tm | N.d. | 0.42 |
| mm4_intergenic_Gm13503|Gm13502_chr2_53633265_F | Primer3: not found at this Tm | N.d. | 0.42 |
| mm4_intergenic_Gm13503|Gm13502_chr2_53633265_R | Primer3: not found at this Tm | N.d. | 0.42 |
| mm3_intergenic_BC017158|Rgs10_chr7_128307284_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm3_intergenic_BC017158|Rgs10_chr7_128307284_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_exon_Krba1_chr6_48416009_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_exon_Krba1_chr6_48416009_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm24291|Mon1b_chr8_113551666_F | TCGTCGGCAGCGTCGCGTTGTTCTGAACCGGAAG | 59.7 | 0.40 |
| mm4_intergenic_Gm24291|Mon1b_chr8_113551666_R | GTCTCGTGGGCTCGGCCTCTCCTTCCTCCCTTGGA | 59.9 | 0.40 |
| mm4_intergenic_Zfp358|Mcoln1_chr8_3500010_F | TCGTCGGCAGCGTCTGCAAAGCCTTGGGAAGTCA | 60.1 | 0.36 |
| mm4_intergenic_Zfp358|Mcoln1_chr8_3500010_R | GTCTCGTGGGCTCGGAGACTTTCTGCGCTACTGCA | 59.6 | 0.36 |
| mm4_intron_Disc1_chr8_125204844_F | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intron_Disc1_chr8_125204844_R | Primer3: not found at this Tm | N.d. | 0.36 |
| mm3_exon_Tmem233_chr5_116040632_F | TCGTCGGCAGCGTCTCCCGACTAGTGGGTGTTCA | 60.1 | 0.34 |
| mm3_exon_Tmem233_chr5_116040632_R | GTCTCGTGGGCTCGGCTCATCTGCACACACTCCCA | 59.6 | 0.34 |
| mm4_intergenic_Gm24587|Dcn_chr10_96925839_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Gm24587|Dcn_chr10_96925839_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Gm24696|Myc_chr15_61984264_F | TCGTCGGCAGCGTCTTCTAGGGTCTCTGCAGGCT | 59.9 | 0.31 |
| mm4_intergenic_Gm24696|Myc_chr15_61984264_R | GTCTCGTGGGCTCGGTGGGGTGGGGAAAATCAAGG | 59.8 | 0.31 |
| mm3_intergenic_Ajap1|Gm25880_chr4_153683070_F | TCGTCGGCAGCGTCAGAAATGCTGGGCACACAGA | 59.8 | 0.30 |
| mm3_intergenic_Ajap1|Gm25880_chr4_153683070_R | GTCTCGTGGGCTCGGGTCCATCTGCTTGCATGAGC | 59.6 | 0.30 |
| mm4_intergenic_Dlk1|Mico1_chr12_109489422_F | TCGTCGGCAGCGTCTGTCCTCTCAAAGTCTTGGCT | 58.9 | 0.30 |
| mm4_intergenic_Dlk1|Mico1_chr12_109489422_R | GTCTCGTGGGCTCGGTCCCGATTTCCACTGTCTGA | 58.3 | 0.30 |
| mm4_intergenic_1700112E06Rik|Gm5670_chr14_22534681_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_1700112E06Rik|Gm5670_chr14_22534681_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_exon_Nynrin/Gm26751_chr14_55871429_F | TCGTCGGCAGCGTCTGCAACTGGATCTTCAGCGT | 59.9 | 0.29 |
| mm3_exon_Nynrin/Gm26751_chr14_55871429_R | GTCTCGTGGGCTCGGGATGAGGTAGTGAAGCCCCG | 59.8 | 0.29 |
| mm4_intergenic_Etv4|Meox1_chr11_101787038_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Etv4|Meox1_chr11_101787038_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm3_intergenic_Rora|F830001A07Rik_chr9_68823587_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm3_intergenic_Rora|F830001A07Rik_chr9_68823587_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Stra6_chr9_58129211_F | TCGTCGGCAGCGTCTGGGGAAACTCAGCCATCAA | 59.2 | 0.25 |
| mm4_intron_Stra6_chr9_58129211_R | GTCTCGTGGGCTCGGAACCGTTTGCCCGAAACTTG | 59.8 | 0.25 |
| mm4_intron_Theg_chr10_79581565_F | TCGTCGGCAGCGTCCCGTCAGCTGTTACAGGGAG | 60.1 | 0.24 |
| mm4_intron_Theg_chr10_79581565_R | GTCTCGTGGGCTCGGTACAGCTGCCATGGTCACTG | 60.0 | 0.24 |
| mm4_intergenic_Gm5091|Dll1_chr17_15333718_F | TCGTCGGCAGCGTCGCAAAGCCAGTCTTTTGTGGA | 59.5 | 0.23 |
| mm4_intergenic_Gm5091|Dll1_chr17_15333718_R | GTCTCGTGGGCTCGGACAGCCCGATGGAGATTTCA | 59.0 | 0.23 |
| mm4_intergenic_Gm24120|Nr2f2_chr7_70350082_F | TCGTCGGCAGCGTCTTTGGAACTGGACAGGGACG | 59.8 | 0.23 |
| mm4_intergenic_Gm24120|Nr2f2_chr7_70350082_R | GTCTCGTGGGCTCGGGACTGGCAGGAGCACAGATT | 60.0 | 0.23 |
| mm4_intergenic_Il23a|Gm23241_chr10_128298200_F | TCGTCGGCAGCGTCCAGGTGACTCAGAGCAGGTG | 60.0 | 0.22 |
| mm4_intergenic_Il23a|Gm23241_chr10_128298200_R | GTCTCGTGGGCTCGGGCCTCTAGCCACAACAACCT | 59.9 | 0.22 |
| mm4_intergenic_4930552P12Rik|Tcf7l2_chr19_55733085_F | TCGTCGGCAGCGTCGGAGAGGAACAGGGTGAGGA | 60.2 | 0.22 |
| mm4_intergenic_4930552P12Rik|Tcf7l2_chr19_55733085_R | GTCTCGTGGGCTCGGGCTGTCGCTTTTCCTAGGGT | 60.0 | 0.22 |
| mm3_intron_Sorl1_chr9_41973184_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm3_intron_Sorl1_chr9_41973184_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Tnfrsf21_chr17_43040237_F | TCGTCGGCAGCGTCACGGCCATGGTGAGTTTCTT | 59.8 | 0.22 |
| mm4_intron_Tnfrsf21_chr17_43040237_R | GTCTCGTGGGCTCGGGGTGAGGAAAAGGGACTCCA | 58.9 | 0.22 |
| mm4_intergenic_D3Bwg0562e|4833424O15Rik_chr3_117523850_F | TCGTCGGCAGCGTCCTTCCTCAGAACCACCGGAC | 60.0 | 0.21 |
| mm4_intergenic_D3Bwg0562e|4833424O15Rik_chr3_117523850_R | GTCTCGTGGGCTCGGGGGGAGACTCCTCATGCTCT | 60.3 | 0.21 |
| mm4_intergenic_Gm8730|Cdh5_chr8_103672675_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm8730|Cdh5_chr8_103672675_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Pik3c2a_chr7_116349932_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Pik3c2a_chr7_116349932_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm12379|Gm12380_chr4_38214586_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm12379|Gm12380_chr4_38214586_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Dytn|Gm12748_chr1_63666867_F | TCGTCGGCAGCGTCTCATGCAGTCTGGCCTCAAA | 59.5 | 0.20 |
| mm4_intergenic_Dytn|Gm12748_chr1_63666867_R | GTCTCGTGGGCTCGGTGCAGTTTTGTGTGCATGTGT | 59.7 | 0.20 |
| mm4_intron_Ryr2_chr13_11742770_F | TCGTCGGCAGCGTCGGTCCTGACAACCTACCTGC | 60.0 | 0.19 |
| mm4_intron_Ryr2_chr13_11742770_R | GTCTCGTGGGCTCGGGGAGAACTCCTGTAGAAAGCAGT | 59.7 | 0.19 |
| mm4_intergenic_Vmn1r62|Vmn1r63_chr7_5788763_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Vmn1r62|Vmn1r63_chr7_5788763_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_VMN1R62|VMN1R63_chr7_GL456219_random_135297_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_VMN1R62|VMN1R63_chr7_GL456219_random_135297_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Spata19|Opcml_chr9_27684840_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Spata19|Opcml_chr9_27684840_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Pcdh20|Gm25886_chr14_88696092_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Pcdh20|Gm25886_chr14_88696092_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Maf/Gm15655|Dynlrb2_chr8_116497863_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Maf/Gm15655|Dynlrb2_chr8_116497863_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm4929|Fam84a_chr12_13917586_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm4929|Fam84a_chr12_13917586_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm25255|Csmd1_chr8_15641623_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm25255|Csmd1_chr8_15641623_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm23389|Gm23181_chr1_94921770_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm23389|Gm23181_chr1_94921770_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm23276|Dach1_chr14_97723587_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm23276|Dach1_chr14_97723587_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm22815|Cntn5_chr9_9403421_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm22815|Cntn5_chr9_9403421_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm14894|Gm5942_chrX_114679118_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm14894|Gm5942_chrX_114679118_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm13916|Gm13915_chr2_108489610_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm13916|Gm13915_chr2_108489610_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Fam173b|Tas2r119_chr15_31894005_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Fam173b|Tas2r119_chr15_31894005_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Dap_chr15_31244035_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Dap_chr15_31244035_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm3_intron_Plekha7_chr7_116288628_F | TCGTCGGCAGCGTCGGGATGACTACCTGGGGACT | 60.0 | 0.18 |
| mm3_intron_Plekha7_chr7_116288628_R | GTCTCGTGGGCTCGGGCCAGCAACTTCCTCTCACT | 59.9 | 0.18 |
| mm4_exon_Fbxl2_chr9_113984093_F | TCGTCGGCAGCGTCCACTAGGGCTTAACACCCGG | 60.1 | 0.18 |
| mm4_exon_Fbxl2_chr9_113984093_R | GTCTCGTGGGCTCGGAGGAGTTGACAGTGTGAGCC | 59.6 | 0.18 |
| mm4_intron_Ccdc125_chr13_100690887_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Ccdc125_chr13_100690887_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_C430002E04Rik|Phf17_chr3_41498945_F | TCGTCGGCAGCGTCGCATGGCCTAGCACAGATCT | 59.8 | 0.18 |
| mm4_intergenic_C430002E04Rik|Phf17_chr3_41498945_R | GTCTCGTGGGCTCGGCCAGTGTATCGCCAGCTGAA | 60.1 | 0.18 |
| mm4_intergenic_Gm4994|Gm7058_chrX_131962250_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm4994|Gm7058_chrX_131962250_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Dgat2_chr7_99176682_F | TCGTCGGCAGCGTCAGGACCAAGCTCAGAGGGAT | 59.9 | 0.17 |
| mm4_intron_Dgat2_chr7_99176682_R | GTCTCGTGGGCTCGGCAGGGCCCATGACTTCCTTA | 59.0 | 0.17 |
| mm4_intergenic_Macrod2|Rpl26-ps5_chr2_142548156_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Macrod2|Rpl26-ps5_chr2_142548156_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm26651|Diras2_chr13_52457254_F | TCGTCGGCAGCGTCCCGTAAATGGGTACAAATTCTTCT | 57.2 | 0.17 |
| mm4_intergenic_Gm26651|Diras2_chr13_52457254_R | GTCTCGTGGGCTCGGTGCCTAGTTTACTCAGAAGGTAGA | 58.4 | 0.17 |
| mm4_intergenic_Sppl2c|Mapt_chr11_104196716_F | TCGTCGGCAGCGTCCCCACCCACAAGACTTGACT | 59.5 | 0.17 |
| mm4_intergenic_Sppl2c|Mapt_chr11_104196716_R | GTCTCGTGGGCTCGGTTGGGCAAGCTGCTTTCTCT | 60.1 | 0.17 |
| mm4_intergenic_Gm16477|Gpr26_chr7_131728218_F | TCGTCGGCAGCGTCTCATGAACCTGGAAGGCTGG | 59.6 | 0.16 |
| mm4_intergenic_Gm16477|Gpr26_chr7_131728218_R | GTCTCGTGGGCTCGGTTAGCTCCCACTAAGCCAGC | 59.4 | 0.16 |
| mm4_intron_Hps4_chr5_112364958_F | TCGTCGGCAGCGTCGCATCCGTACTCACTGCCAA | 60.3 | 0.16 |
| mm4_intron_Hps4_chr5_112364958_R | GTCTCGTGGGCTCGGCAGGATGGCAGAGCAGAGAG | 59.8 | 0.16 |
| mm4_intron_Gsk3b_chr16_38182225_F | TCGTCGGCAGCGTCTGCTTTGTTAAACTGGCTGCC | 59.9 | 0.16 |
| mm4_intron_Gsk3b_chr16_38182225_R | GTCTCGTGGGCTCGGGTGCTGTGTGTGCTGTGTTT | 59.8 | 0.16 |
| mm3_intergenic_Ifne|Mir31_chr4_88907333_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Ifne|Mir31_chr4_88907333_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Rnls_chr19_33369969_F | TCGTCGGCAGCGTCGCAGTGGGCATCTCTTCTGT | 60.0 | 0.15 |
| mm4_intron_Rnls_chr19_33369969_R | GTCTCGTGGGCTCGGTGCAAAACAGCAAATTTGGATACA | 58.6 | 0.15 |
| mm4_intergenic_Mir29b-1/Gm27019|Gm13834_chr6_31068371_F | TCGTCGGCAGCGTCAGCGAGGCTCACAATGTACC | 60.1 | 0.15 |
| mm4_intergenic_Mir29b-1/Gm27019|Gm13834_chr6_31068371_R | GTCTCGTGGGCTCGGCGCAGGCTGATACTCCTGAG | 59.9 | 0.15 |
| mm4_intron_Prkcq_chr2_11200398_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Prkcq_chr2_11200398_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Slc22a23|Pxdc1_chr13_34568903_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Slc22a23|Pxdc1_chr13_34568903_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm24999|Gm25000_chr13_60312840_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm24999|Gm25000_chr13_60312840_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Rtn1_chr12_72298389_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Rtn1_chr12_72298389_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Vmn1r-ps54|Vmn1r74_chr7_11803440_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Vmn1r-ps54|Vmn1r74_chr7_11803440_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Dctd|Tenm3_chr8_48167551_F | TCGTCGGCAGCGTCAATGTGTGCCAGGACCTGAC | 60.2 | 0.14 |
| mm4_intergenic_Dctd|Tenm3_chr8_48167551_R | GTCTCGTGGGCTCGGTTCTGGAGGGAGGGAGATGG | 60.0 | 0.14 |
| mm4_intergenic_Csmd1|Gm25665_chr8_18051950_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Csmd1|Gm25665_chr8_18051950_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Skor1|Map2k5_chr9_63158769_F | TCGTCGGCAGCGTCCCCGCCTCTCTTTTCCATGT | 60.0 | 0.14 |
| mm4_intergenic_Skor1|Map2k5_chr9_63158769_R | GTCTCGTGGGCTCGGTGCTGGGCTCTCCTAGGAAT | 60.0 | 0.14 |
| mm4_intron_Rbms3_chr9_116711545_F | TCGTCGGCAGCGTCTCCATCCTGGGAGATTCCTGT | 59.9 | 0.13 |
| mm4_intron_Rbms3_chr9_116711545_R | GTCTCGTGGGCTCGGCTGGTCAACCCTAGAGCTGC | 60.1 | 0.13 |
| mm3_intergenic_Gm22788|Gm24432_chr18_34064847_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intergenic_Gm22788|Gm24432_chr18_34064847_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm27034|Rpl36a-ps1_chr14_98845936_F | TCGTCGGCAGCGTCTGATGGAAGGCTGAGTGCTG | 60.0 | 0.13 |
| mm4_intergenic_Gm27034|Rpl36a-ps1_chr14_98845936_R | GTCTCGTGGGCTCGGAGGCATCGCAAAAGGTGAGA | 59.9 | 0.13 |
| mm3_intergenic_Gm16079|Gm13049_chr4_150780826_F | TCGTCGGCAGCGTCCCCTGGGTTCTTTCGACCTC | 60.0 | 0.13 |
| mm3_intergenic_Gm16079|Gm13049_chr4_150780826_R | GTCTCGTGGGCTCGGACCTGCTGCAGACCTTTTCA | 59.8 | 0.13 |
| mm3_intergenic_1700013D24Rik|Pex5_chr6_124392547_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intergenic_1700013D24Rik|Pex5_chr6_124392547_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Catsper3|Pitx1_chr13_55816202_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Catsper3|Pitx1_chr13_55816202_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Hsd17b12_chr2_94114746_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Hsd17b12_chr2_94114746_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intron_Fads2_chr19_10100899_F | TCGTCGGCAGCGTCGGCCATCTTCCACTTGGGG | 60.3 | 0.11 |
| mm3_intron_Fads2_chr19_10100899_R | GTCTCGTGGGCTCGGTGCATGTTCACAGCGCATAC | 59.5 | 0.11 |
| mm4_intergenic_Aplp2|Gm7244_chr9_31212777_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Aplp2|Gm7244_chr9_31212777_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Hmg20a|Gm26868_chr9_56547332_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Hmg20a|Gm26868_chr9_56547332_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Rora|F830001A07Rik_chr9_68679438_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Rora|F830001A07Rik_chr9_68679438_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Clrn1|Gm22491_chr3_58908667_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Clrn1|Gm22491_chr3_58908667_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Rbms3_chr9_117176131_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Rbms3_chr9_117176131_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm22492|Pdcd6ip_chr9_113455155_F | TCGTCGGCAGCGTCTCTGCTCTCAAAACAGCCCA | 59.5 | 0.11 |
| mm4_intergenic_Gm22492|Pdcd6ip_chr9_113455155_R | GTCTCGTGGGCTCGGATCTCTGCTCCACGGTCTCT | 60.0 | 0.11 |
| mm4_exon_Scap_chr9_110381343_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Scap_chr9_110381343_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Sncaip_chr18_52768446_F | TCGTCGGCAGCGTCTCTGTCCGTCCATCCCTCC | 60.3 | 0.10 |
| mm4_exon_Sncaip_chr18_52768446_R | GTCTCGTGGGCTCGGGGTCCCGAAAACCCTCAGG | 60.0 | 0.10 |
| mm4_intron_Fgf1_chr18_38861062_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Fgf1_chr18_38861062_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Nhsl1_chr10_18392272_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Nhsl1_chr10_18392272_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Lama3_chr18_12359154_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Lama3_chr18_12359154_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Six2|Srbd1_chr17_85696625_F | TCGTCGGCAGCGTCGTCCCTGTTTGCCTCTGGAA | 59.8 | 0.09 |
| mm4_intergenic_Six2|Srbd1_chr17_85696625_R | GTCTCGTGGGCTCGGAAGAACTCAGTGGGGCCATG | 59.9 | 0.09 |
| mm4_exon_Ankrd33_chr15_101119627_F | TCGTCGGCAGCGTCGCACGGTATGAGCTGACACT | 60.1 | 0.09 |
| mm4_exon_Ankrd33_chr15_101119627_R | GTCTCGTGGGCTCGGCACCTCCTCGTGGTTCTGTT | 59.6 | 0.09 |
| mm4_intergenic_Gm5054|Ifitm10_chr7_142320863_F | TCGTCGGCAGCGTCGCTGCTGTCCCCTCTATTCC | 59.8 | 0.09 |
| mm4_intergenic_Gm5054|Ifitm10_chr7_142320863_R | GTCTCGTGGGCTCGGAGGGTAAGGTCATGGTCCCA | 59.8 | 0.09 |
| mm4_intergenic_1700001G01Rik|Gm26235_chr18_17290699_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_1700001G01Rik|Gm26235_chr18_17290699_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Aldh1a3|Asb7_chr7_66626678_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Aldh1a3|Asb7_chr7_66626678_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_exon_Nfatc1_chr18_80698421_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_exon_Nfatc1_chr18_80698421_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Ccdc85c_chr12_108245829_F | TCGTCGGCAGCGTCGTGATTCGACCTCCCTGAGC | 60.1 | 0.08 |
| mm4_intron_Ccdc85c_chr12_108245829_R | GTCTCGTGGGCTCGGATCGCAATGAAGGACACCGT | 60.0 | 0.08 |
| mm4_intergenic_Mir674|Rap1a-ps2_chr2_117200099_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Mir674|Rap1a-ps2_chr2_117200099_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Ext2_chr2_93700420_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Ext2_chr2_93700420_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_4930564D02Rik|1700095B22Rik_chr3_105331568_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_4930564D02Rik|1700095B22Rik_chr3_105331568_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Sdk2_chr11_113805850_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Sdk2_chr11_113805850_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Gm3054_chr5_137165146_F | TCGTCGGCAGCGTCCGTAGCAGGGCAAGGTTGTA | 60.0 | 0.08 |
| mm4_intron_Gm3054_chr5_137165146_R | GTCTCGTGGGCTCGGCCTCCTCCATCCTGAAGCTC | 59.2 | 0.08 |
| mm3_intergenic_3110083C13Rik|Fgf9_chr14_58036449_F | TCGTCGGCAGCGTCTGGCGTTGAAAGGGTAGGAC | 59.9 | 0.07 |
| mm3_intergenic_3110083C13Rik|Fgf9_chr14_58036449_R | GTCTCGTGGGCTCGGACAGAACCTTCCTGGAGGGA | 59.8 | 0.07 |
| mm4_exon_Cog1/Fam104a_chr11_113662215_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Cog1/Fam104a_chr11_113662215_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm10858|Gtf3a_chr5_146914068_F | TCGTCGGCAGCGTCTTGTCTACACAGTGGCAGGC | 60.2 | 0.07 |
| mm4_intergenic_Gm10858|Gtf3a_chr5_146914068_R | GTCTCGTGGGCTCGGAGGTTTCCCTTGCCAGAACC | 60.1 | 0.07 |
| mm4_intron_Aldh1a2_chr9_71236734_F | TCGTCGGCAGCGTCTGTTGCCAAACAGCTGTGAC | 59.5 | 0.07 |
| mm4_intron_Aldh1a2_chr9_71236734_R | GTCTCGTGGGCTCGGTCTGAGTGAGTGAAGTGCCT | 58.2 | 0.07 |
| mm4_intron_Tsku_chr7_98355068_F | TCGTCGGCAGCGTCACAGCCCAGATGTTGCTCTC | 60.0 | 0.07 |
| mm4_intron_Tsku_chr7_98355068_R | GTCTCGTGGGCTCGGCAGGGGTTTGTTGGCTTGTG | 59.8 | 0.07 |
| mm4_intergenic_Gm20424|Lbx1_chr19_45201003_F | TCGTCGGCAGCGTCGGCATTTCAGACTGGGCTCT | 60.0 | 0.07 |
| mm4_intergenic_Gm20424|Lbx1_chr19_45201003_R | GTCTCGTGGGCTCGGTTCCTCCTGCAAACCCCTTC | 59.8 | 0.07 |
| mm4_intergenic_Efnb1|Gm14812_chrX_99187257_F | TCGTCGGCAGCGTCTGGCCCTCTCTGAGACATGA | 59.9 | 0.07 |
| mm4_intergenic_Efnb1|Gm14812_chrX_99187257_R | GTCTCGTGGGCTCGGAAAGTGACAGGGCTGACCAG | 59.8 | 0.07 |
| mm4_intergenic_Gm12057|RP23-242C19.7/B3gnt2_chr11_22833557_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm12057|RP23-242C19.7/B3gnt2_chr11_22833557_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Mep1a|Ankrd66_chr17_43519026_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Mep1a|Ankrd66_chr17_43519026_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Igkv3-7|Igkv3-5_chr6_70620614_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Igkv3-7|Igkv3-5_chr6_70620614_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Mfsd7c_chr12_85778862_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Mfsd7c_chr12_85778862_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intron_Znrf3_chr11_5426872_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intron_Znrf3_chr11_5426872_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Zfand3_chr17_30115887_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Zfand3_chr17_30115887_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Kctd3|Kcnk2_chr1_189088958_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Kctd3|Kcnk2_chr1_189088958_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Meis2_chr2_116049118_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Meis2_chr2_116049118_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Cltb_chr13_54611073_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Cltb_chr13_54611073_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Tas2r144|Gstk1_chr6_42218614_F | TCGTCGGCAGCGTCAGTGACAAAGTGGCATCCGG | 60.6 | 0.06 |
| mm4_intergenic_Tas2r144|Gstk1_chr6_42218614_R | GTCTCGTGGGCTCGGCCCAGAGAAACTCCCTGTGT | 58.9 | 0.06 |
| mm4_intergenic_Gm5570|n-R5s162_chr6_60205224_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm5570|n-R5s162_chr6_60205224_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Atg2b_chr12_105642192_F | TCGTCGGCAGCGTCGCTACCAACAAACCCAAATAAACA | 58.3 | 0.05 |
| mm4_intron_Atg2b_chr12_105642192_R | GTCTCGTGGGCTCGGAGGAGGATTTGAGTGGATGACA | 58.8 | 0.05 |
| mm4_intergenic_CT030684.1|Gm23276_chr14_97299687_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_CT030684.1|Gm23276_chr14_97299687_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Nckap5_chr1_126254831_F | TCGTCGGCAGCGTCATAATAGGCCAGCCAGGGTG | 59.2 | 0.05 |
| mm4_intron_Nckap5_chr1_126254831_R | GTCTCGTGGGCTCGGCCCTCTCGATTCATCTGGCTC | 59.9 | 0.05 |
| mm4_intron_Pknox2_chr9_36981509_F | TCGTCGGCAGCGTCTGCCAGTAAAACCAACAGTTCTG | 59.6 | 0.05 |
| mm4_intron_Pknox2_chr9_36981509_R | GTCTCGTGGGCTCGGCACAGTGGTGTAGTGACCCC | 59.9 | 0.05 |
| mm3_intergenic_Macrod2|Gm14080_chr2_141100063_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Macrod2|Gm14080_chr2_141100063_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm26651|Diras2_chr13_52069972_F | TCGTCGGCAGCGTCGTCTGTCCTCTAAGTGTCAAGCA | 59.9 | 0.05 |
| mm4_intergenic_Gm26651|Diras2_chr13_52069972_R | GTCTCGTGGGCTCGGTCAAATCCCACAGCCTTCCC | 59.9 | 0.05 |
| mm4_intergenic_Tmem117|Nell2_chr15_95209426_F | TCGTCGGCAGCGTCGGCCCAGAGGATAGCAAAGG | 60.1 | 0.04 |
| mm4_intergenic_Tmem117|Nell2_chr15_95209426_R | GTCTCGTGGGCTCGGTGTCAAAACAGGAGCTCCCC | 59.8 | 0.04 |
| mm4_intergenic_Gm23829|Gm5974_chr1_48166819_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm23829|Gm5974_chr1_48166819_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gucy1a3|Map9_chr3_82300388_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gucy1a3|Map9_chr3_82300388_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Pde4c_chr8_70729728_F | TCGTCGGCAGCGTCCGAAGTGACTGGCTCTGCTT | 60.3 | 0.04 |
| mm4_intron_Pde4c_chr8_70729728_R | GTCTCGTGGGCTCGGGACCTAGACGTGTGCACACA | 59.9 | 0.04 |
| mm4_intron_Dpp8_chr9_65049922_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Dpp8_chr9_65049922_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Peli2|Gm23881_chr14_48361055_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Peli2|Gm23881_chr14_48361055_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Aprt_chr8_122575908_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Aprt_chr8_122575908_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Tor1aip2/Tor1aip1_chr1_156035584_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Tor1aip2/Tor1aip1_chr1_156035584_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ccnh_chr13_85192970_F | TCGTCGGCAGCGTCAGTGTGGCTCAATACAGGCC | 60.0 | 0.03 |
| mm4_intron_Ccnh_chr13_85192970_R | GTCTCGTGGGCTCGGTCAGTTTCAGCCCAGTCCAG | 59.6 | 0.03 |
| mm4_intergenic_Rreb1|Ssr1_chr13_37965179_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Rreb1|Ssr1_chr13_37965179_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Akap12_chr10_4298393_F | TCGTCGGCAGCGTCTGGTGCGAAAGAGATCATGGT | 59.7 | 0.03 |
| mm4_intron_Akap12_chr10_4298393_R | GTCTCGTGGGCTCGGCAAGCTTGCATGGACAGGC | 59.7 | 0.03 |
| mm4_intron_Gm21002_chr8_21392056_F | TCGTCGGCAGCGTCTCCTTTGGAGACCCAGAAGGA | 60.1 | 0.03 |
| mm4_intron_Gm21002_chr8_21392056_R | GTCTCGTGGGCTCGGGCCTTGGGAGCCACATTACT | 60.0 | 0.03 |
| mm4_intron_Gm15308_chr8_21529275_F | TCGTCGGCAGCGTCTCCTTTGGAGACCCAGAAGGA | 60.1 | 0.03 |
| mm4_intron_Gm15308_chr8_21529275_R | GTCTCGTGGGCTCGGGCCTTGGGAGCCACATTACT | 60.0 | 0.03 |
| mm4_intron_Defa2_chr8_21378760_F | TCGTCGGCAGCGTCTCCTTTGGAGACCCAGAAGGA | 60.1 | 0.03 |
| mm4_intron_Defa2_chr8_21378760_R | GTCTCGTGGGCTCGGGCCTTGGGAGCCACATTACT | 60.0 | 0.03 |
| mm4_intron_Defa20_chr8_21509501_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Defa20_chr8_21509501_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_5S_rRNA|Cops8_chr1_90334747_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_5S_rRNA|Cops8_chr1_90334747_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Rbm33|Shh/9530036O11Rik_chr5_28456605_F | TCGTCGGCAGCGTCAGAGTTGGAAATGGGCAGGG | 59.9 | 0.02 |
| mm4_intergenic_Rbm33|Shh/9530036O11Rik_chr5_28456605_R | GTCTCGTGGGCTCGGGCCCTCCTCATTGGAAGACC | 60.1 | 0.02 |
| mm4_intergenic_D230002A01Rik|Gm24254_chr8_91903848_F | TCGTCGGCAGCGTCGTTGCTGCCAAAGTCAGTGG | 59.9 | 0.02 |
| mm4_intergenic_D230002A01Rik|Gm24254_chr8_91903848_R | GTCTCGTGGGCTCGGGACCTGTGGTCCATCCTCAC | 59.7 | 0.02 |
| mm4_intergenic_Kif2b|Gm11498_chr11_91632239_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Kif2b|Gm11498_chr11_91632239_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Arhgap8_chr15_84737324_F | TCGTCGGCAGCGTCCGTGTGCCCTTCCTTCTGAA | 60.2 | 0.02 |
| mm4_intron_Arhgap8_chr15_84737324_R | GTCTCGTGGGCTCGGTAAAGGCCAGAGCTACGCAG | 59.8 | 0.02 |
| mm4_intergenic_6720401G13Rik|2610018G03Rik_chrX_50759780_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_6720401G13Rik|2610018G03Rik_chrX_50759780_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Prdm11|Gm13802_chr2_93065246_F | TCGTCGGCAGCGTCAGCAGCTATTAGGAACCGGC | 59.8 | 0.01 |
| mm4_intergenic_Prdm11|Gm13802_chr2_93065246_R | GTCTCGTGGGCTCGGCTTACCAGCTGGCTGTCCAA | 59.9 | 0.01 |
| mm4_intron_Csmd2_chr4_128299767_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Csmd2_chr4_128299767_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Muc1_chr3_89231777_F | TCGTCGGCAGCGTCGAAATCCACCTCCCTTGGGG | 60.0 | 0.01 |
| mm4_exon_Muc1_chr3_89231777_R | GTCTCGTGGGCTCGGATACAGACCAGCACCAGCAG | 59.7 | 0.01 |
| mm3_intron_Atf2_chr2_73819577_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Atf2_chr2_73819577_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Serp2|Lacc1_chr14_76728742_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Serp2|Lacc1_chr14_76728742_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Gm16998_chr10_54075903_F | TCGTCGGCAGCGTCGGAGTTTACGGGAAGCGCT | 60.0 | 0.00 |
| mm4_exon_Gm16998_chr10_54075903_R | GTCTCGTGGGCTCGGCGAGTCTTAACACGGCTCCC | 60.4 | 0.00 |
| mm3_intergenic_Gm13750|Gm25748_chr1_64174877_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Gm13750|Gm25748_chr1_64174877_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25985|Gm6404_chr13_115461968_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25985|Gm6404_chr13_115461968_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tmem232_chr17_65448523_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tmem232_chr17_65448523_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sufu_chr19_46447214_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sufu_chr19_46447214_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ntn1_chr11_68387121_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ntn1_chr11_68387121_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Mtmr3_chr11_4484476_F | TCGTCGGCAGCGTCCCACTGGCTTTCCCCAAAGA | 60.1 | 0.00 |
| mm4_intron_Mtmr3_chr11_4484476_R | GTCTCGTGGGCTCGGGCAACTGATGGAAGAAGCTGC | 60.1 | 0.00 |
| mm4_intron_Gli2_chr1_119005029_F | TCGTCGGCAGCGTCTGATTCCCACAGGCAACACA | 59.8 | 0.00 |
| mm4_intron_Gli2_chr1_119005029_R | GTCTCGTGGGCTCGGCGGGCATTTCCAGAGCTGTA | 60.1 | 0.00 |
| mm4_intergenic_Zfy2|Gm22119_chrY_2424257_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Zfy2|Gm22119_chrY_2424257_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ryr2|Mtr_chr13_12164622_F | TCGTCGGCAGCGTCACACTGCAGCAGTAACTCACA | 59.8 | 0.00 |
| mm4_intergenic_Ryr2|Mtr_chr13_12164622_R | GTCTCGTGGGCTCGGGGTGGTTCGGACTGTCCTTT | 59.8 | 0.00 |
| mm4_intergenic_Mlycd|Osgin1_chr8_119424427_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mlycd|Osgin1_chr8_119424427_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25693|Gm12129_chr11_38059073_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25693|Gm12129_chr11_38059073_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Acaa2|Gm24559_chr18_74901973_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Acaa2|Gm24559_chr18_74901973_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Taf11_chr17_27908880_F | TCGTCGGCAGCGTCACTGCAGAAGTAAAACTCTCAGGT | 59.8 | 0.00 |
| mm4_exon_Taf11_chr17_27908880_R | GTCTCGTGGGCTCGGGCGCGGAGATCTAGAACCAG | 60.3 | 0.00 |
| mm4_exon_Map3k3_chr11_106123795_F | TCGTCGGCAGCGTCAGCTCACACTTTTGCCTCCT | 59.5 | 0.00 |
| mm4_exon_Map3k3_chr11_106123795_R | GTCTCGTGGGCTCGGGCAGACTGGGAAGGCTTGAT | 60.0 | 0.00 |
| mm3_intergenic_Padi1|4930515B02Rik_chr4_140871160_F | TCGTCGGCAGCGTCCTCCAATGTCCTGGGAGCTC | 59.8 | 0.00 |
| mm3_intergenic_Padi1|4930515B02Rik_chr4_140871160_R | GTCTCGTGGGCTCGGTGCCTCTGTGTTTCCGAGAC | 59.9 | 0.00 |
| mm2_intron_Ppa1_chr10_61653065_F | TCGTCGGCAGCGTCCCATAAGACTCCGCCGTCTC | 59.9 | 0.00 |
| mm2_intron_Ppa1_chr10_61653065_R | GTCTCGTGGGCTCGGGTCAGCCAAGGGTTACCACA | 59.8 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313820 |
AGGGAGCCTGGGATTAGGAGCTTACTTGGGGGTTTTCCCCCTCCCCCCCTCTGGAGAGTCCGGGGATGGAGAGCCGAAAG GACATG |
| mm3_intron_Sufu_chr19_46477777 |
AGTTGCTGTGCTAGGAGCTGCTTAATCAAAGGCCTGTTATGGGCTCATTAGTGTGGTCCACCACGGGCCACCCCTCAGGA GAGTCCTGGGAAGGCTGGCTTAGGTCCCGCCCTTCAGGCACGCACCCTTGATCACCAAG |
| mm4_intergenic_Gm21614|Gm23249_chr12_93537839 |
ACACAGCTCTTGTTTCTGACATGTTTGCATAGATGCTGTCATCTCCTCTTCTGGAAAGTCCCGGTGAGGTATTCTGTTAT TAAAATTAGTACCAAGCACTTTTATATAAGTGGAAAGTGCTGTTAAATTCAGT |
| mm4_intron_Acpp_chr9_104310397 |
TGGTCAGCCAGCCTTGTTAGCTTCCACATAGCACATTTGCAGACTCGATCTTCATTTCCTTCTATCCAAACCCTGGACTC TTCTGAGGGGTTGAGTGAGGTAGACTAACAACTGCCACTTCCAGTTTGTCT |
| mm4_intergenic_Igfbp5|Tnp1_chr1_72877283 |
AGTCCATTCTCTCTGCCCTCTATTCGAAAAGCCCTGGACTCTTCAGAAGATGGGAGGGGGGGGGACTTAATATCAACAGA GTTTCACTGAGATGACTAACTTATTCTGGACACACTGAAATCTGGTCGCACTCTCAGAGA |
| mm4_intergenic_Gm24291|Mon1b_chr8_113551666 |
GCGTTGTTCTGAACCGGAAGAAGTGAAGACAGCTTCCTCCTACCCCCATCTCAGAGCAGAGCAACTTCCTCTTGACTTTC CCTCCCCTCCCCTGGAGAATCAGGGAGTAGCAGGTAACACTCCAAGGGAGGAAGGAGAGG |
| mm4_intergenic_Zfp358|Mcoln1_chr8_3500010 |
TGCAAAGCCTTGGGAAGTCACCAGGAGGTTCTAGAAGGTGGAAATTCTTTGGAGGTCCTGGACTCTCCGTAGGAGGAGAC TGGCTGTAAAAGATAGGACTGAGGCTGTTGCAGTAGCGCAGAAAGTCT |
| mm3_exon_Tmem233_chr5_116040632 |
TCCCGACTAGTGGGTGTTCATTTGCCAGGGACCCGCCTCTGGAGAGTCCTGGAGGAAAAGATCTTACAGTTTTAAAATCA AGGATCCATTCCTCAGAAACTTCTTTGGGAGTGTGTGCAGATGAG |
| mm4_intergenic_Gm24696|Myc_chr15_61984264 |
TTCTAGGGTCTCTGCAGGCTCCCCAGATCTGGGTTGGCAATTCACTCCTCCCCCTTTCTGGGAAGTCCGGGTTTTCCCCA ACCCCCCAATTCATGGCATATTCTCGCGTCTAGCGCCTTGATTTTCCCCACCCCA |
| mm3_intergenic_Ajap1|Gm25880_chr4_153683070 |
AGAAATGCTGGGCACACAGAGGTCCAGAACTTTCCAGAGGGGGGCATGATTTCCACAAGGGCACATTCTCTCTAAGTGGC TATTTGTCATTCAAAGAGAAGACATGTGTTGCTCATGCAAGCAGATGGAC |
| mm4_intergenic_Dlk1|Mico1_chr12_109489422 |
TGTCCTCTCAAAGTCTTGGCTATCATCTTACATGAGATTGGAGAGGTGAATACTCTGTAGTCTTCATGTTGGGGGGATCA ACTACCCTGTACTCTTCAGAAGGGGTGAGACGGATGATCAGACAGTGGAAATCGGGA |
| mm3_exon_Nynrin/Gm26751_chr14_55871429 |
TGCAACTGGATCTTCAGCGTTCTCTGGGAGCTCCTGCCCCTCTGGAGAGTCCGGGGCTTCCTGTCATCTGACGGGGCTTC ACTACCTCATC |
| mm4_intron_Stra6_chr9_58129211 |
TGGGGAAACTCAGCCATCAAAGCCCTGGCTTCTCCAGTGGGGGTGATTCTGAGGGCCAGGGGGATCAAGTTTCGGGCAAA CGGTT |
| mm4_intron_Theg_chr10_79581565 |
CCGTCAGCTGTTACAGGGAGCAACTTACAGAAGGAGAGAATGTTCCCAATGGGGCCTCATCCCCGGGTCCAGGAACCTGG ACTCTCCAGAGGGTCTGTCCCAGTGACCATGGCAGCTGTA |
| mm4_intergenic_Gm5091|Dll1_chr17_15333718 |
GCAAAGCCAGTCTTTTGTGGAGAACCAAAGGCCCTGGTCTCTCCAGAGGGAAAGAAATGTTAATTGAAAAATTCCTTACA TAGGTGAAGGCTCTGAAGTCTGCTCAACATAAAAGGTATGAAATCTCCATCGGGCTGT |
| mm4_intergenic_Gm24120|Nr2f2_chr7_70350082 |
TTTGGAACTGGACAGGGACGATGATCTCCCCCATCTAACTAGAGATGATGGGTCCCCATCTCTGAAGAGGCCTGGGAAGA CTTTCTGGGAGGCCAATCTGTGCTCCTGCCAGTC |
| mm4_intergenic_Il23a|Gm23241_chr10_128298200 |
CAGGTGACTCAGAGCAGGTGGGATTCCCCTCCCTACATCATCTCCCTCTTTGGAGAGCCCAGGTATGCCGCTTCAGTTCC AGGGGAAATGAGTGGTGAGGTTGTTGTGGCTAGAGGC |
| mm4_intergenic_4930552P12Rik|Tcf7l2_chr19_55733085 |
GGAGAGGAACAGGGTGAGGACCTAGGCTTCCCAGGTGCCAGGACTTAGGTAGTCCTGGCATTCCAGGCCCTCTGGAGAGT CCAGGAAGGGAAAGGGAACTCACCCTAGGAAAAGCGACAGC |
| mm4_intron_Tnfrsf21_chr17_43040237 |
ACGGCCATGGTGAGTTTCTTCCGCTTCCTCTCTGCGTGCAGAGCGCGCGTCCTCATTCCTGGTCTCTCAAGGGGTGGGGA ATCTGTAGCTTGTGGAGTCCCTTTTCCTCACC |
| mm4_intergenic_D3Bwg0562e|4833424O15Rik_chr3_117523850 |
CTTCCTCAGAACCACCGGACTTTGCATTCACATGTCTTCACTGCTAAGTCCAGGGCCAGACATGGCTAAAGCCTGGGCTC TCCAGAGGAAGGGGGAAAGAGCATGAGGAGTCTCCCC |
| mm4_intergenic_Dytn|Gm12748_chr1_63666867 |
TCATGCAGTCTGGCCTCAAATTCCTGAGCTCAAATAATCGTCCTACCTCCCCATCTCGAGAGTCCCGGGAATAGACACAT GCACACAAAACTGCA |
| mm4_intron_Ryr2_chr13_11742770 |
GGTCCTGACAACCTACCTGCTTGCCTCCAATAGGAGCCTATGACAACATAGTTGCCATCTCTGCCCCAGCTTTAGCTTTT CCTGCCCTTTGGAGAGCCCTGGACTGCTTTCTACAGGAGTTCTCC |
| mm3_intron_Plekha7_chr7_116288628 |
GGGATGACTACCTGGGGACTCAGTCCACCCCTCTGCTGAGTCCTGGGAGGAGGGACGGGCAGGAGGTAGTCCTCAGTAGT GAGAGGAAGTTGCTGGC |
| mm4_exon_Fbxl2_chr9_113984093 |
CACTAGGGCTTAACACCCGGTCCTGGATTCTCCTGAGCGTGGGACTCAGAGGGAGCAAAAAGAAAAGTAAAACCTCATTC AAGCACACTGGGGCTCACACTGTCAACTCCT |
| mm4_intergenic_C430002E04Rik|Phf17_chr3_41498945 |
GCATGGCCTAGCACAGATCTCTCAGGAATAAAGTCACGTTTAGGCAGGGAGTAATTGAAATACAGATCACTCAGAAAAGA TATTCCCTTCCCCTGGAGAGGCCTGGTTTGTTCAGCTGGCGATACACTGG |
| mm4_intron_Dgat2_chr7_99176682 |
AGGACCAAGCTCAGAGGGATGTCCCCGGACTGTCCTGGGGAGGGGATACAACAGCTCAGATGAGGTATCAGCCTAACATA AGGAAGTCATGGGCCCTG |
| mm4_intergenic_Gm26651|Diras2_chr13_52457254 |
CCGTAAATGGGTACAAATTCTTCTTAGTTTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTGTCT TGTTTGGGACCCCCCCTTTGCAGAGCCCAGGCAGTATCTACCTTCTGAGTAAACTAGGCA |
| mm4_intergenic_Sppl2c|Mapt_chr11_104196716 |
CCCACCCACAAGACTTGACTAGAGGAGGGTTTCTAAATCATGGTGTTTGCAGAGGTCTTCCAGAACTCTCCAGAGCTGTG GACAGAGAGAAAGCAGCTTGCCCAA |
| mm4_intergenic_Gm16477|Gpr26_chr7_131728218 |
TCATGAACCTGGAAGGCTGGGCACTCAGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTGACTCAG CGGCTCCCCAGGGCTCTCCTGAAGGCGGGAGAGGCTGGCTTAGTGGGAGCTAA |
| mm4_intron_Hps4_chr5_112364958 |
GCATCCGTACTCACTGCCAAGGCAGATCGGACCTCGGCCAGTGCTCTCCAGAGGTGGGGCTAGAACTGGTCAAGCCCTGG GTTCCCTTCCTCTCTGCTCTGCCATCCTG |
| mm4_intron_Gsk3b_chr16_38182225 |
TGCTTTGTTAAACTGGCTGCCTAAAAGGATTGTTGTCAGTACTTGTAACGAGGCCTGAACTCTCCAGAGCAGAGGAGTTA TCTGTGTCGGTCTAAACACAGCACACACAGCAC |
| mm4_intron_Rnls_chr19_33369969 |
GCAGTGGGCATCTCTTCTGTTCCTGGTGACGCCAGGACTTTGCAGAGGGTGGCAGAGAAAAAAGCTAAATTTGGGTTGTT GTTCATTTAGAGATAGAAAAGTAAGCAGAAATGTATCCAAATTTGCTGTTTTGCA |
| mm4_intergenic_Mir29b-1/Gm27019|Gm13834_chr6_31068371 |
AGCGAGGCTCACAATGTACCCAACTCCAGGGAGAAGACAGCACCTCGCTCTGAAGGGCTGGCCCTGGTCTCTGCAGAGGG AGGGGTTTCCCTCTCCTTTAAGCCCTGCTCCTCAGGAGTATCAGCCTGCG |
| mm4_intergenic_Dctd|Tenm3_chr8_48167551 |
AATGTGTGCCAGGACCTGACTTCCAAGTTCACCATCTTTCCATGGCTCTCCTGAAGGGGGGAAAATGACTTCCCCATCTC CCTCCCTCCAGAA |
| mm4_intergenic_Skor1|Map2k5_chr9_63158769 |
CCCGCCTCTCTTTTCCATGTGTGGGCCATTGCTCTCCTTGTCCCCTGGGTTCCCCAGAGTGGGGGAAAAGACTGAAAGAA TGAATTCCTAGGAGAGCCCAGCA |
| mm4_intron_Rbms3_chr9_116711545 |
TCCATCCTGGGAGATTCCTGTTATGACTGCCATTACCCAGTTCTCTCCAGATTGGGGGAAGTTGTAGAGGCAGCTCTAGG GTTGACCAG |
| mm4_intergenic_Gm27034|Rpl36a-ps1_chr14_98845936 |
TGATGGAAGGCTGAGTGCTGCCTTCCCATTTGGGTCCTGGACTCTCCACCAGGAGGGAGAACTGTCACTTCCACCATCTC ACCTTTTGCGATGCCT |
| mm3_intergenic_Gm16079|Gm13049_chr4_150780826 |
CCCTGGGTTCTTTCGACCTCACATGGCTTTGCTGCCTCTCTCTTCCTGGACTTTACAGAGCGGGGGATGAAAAGGTCTGC AGCAGGT |
| mm3_intron_Fads2_chr19_10100899 |
GGCCATCTTCCACTTGGGGAGCGCCGAACACGAAGGCTGGAGCGCCCCCTTTGGAGAGTCCCAGGCTCCGGCTGGAACAG CGCGCAGTATGCGCTGTGAACATGCA |
| mm4_intergenic_Gm22492|Pdcd6ip_chr9_113455155 |
TCTGCTCTCAAAACAGCCCAAAGCATCCCGGCCGAAAGATGGAGCAGCCCGTTCCACTGCTCTGGAGAGTCTAGGCCAAC AAGTGAGATGACAACAGCAGGAAAGAGACCGTGGAGCAGAGAT |
| mm4_exon_Sncaip_chr18_52768446 |
TCTGTCCGTCCATCCCTCCCGCCGTCCTCCCGCGCTCCGGTGAGTCCAGGTCCCAACCGCGGGCGCCGCAGGGAGGAGAG GGACGAGGGCAGCCCGTGCAACTTTGCACCGGGCGACACCCTGAGGGTTTTCGGGACC |
| mm4_intergenic_Six2|Srbd1_chr17_85696625 |
GTCCCTGTTTGCCTCTGGAAGGCTGAAGGCAGCANNNNNNNNNNNNNNNNNNNNNNTGGTGAGGCCTGGCTCTGCTCATG GCCCCACTGAGTTCTT |
| mm4_exon_Ankrd33_chr15_101119627 |
GCACGGTATGAGCTGACACTCAGGCCTCAGGGGCAGCAAAGTCTGGCTCCTCCAGTCTGGAGATTCCAGGAGAGGAAGAA GAAGGAGGAAGAAACAGAACCACGAGGAGGTG |
| mm4_intergenic_Gm5054|Ifitm10_chr7_142320863 |
GCTGCTGTCCCCTCTATTCCTGGCTTGGTTTACCAAGCCTCTGGATGTGAGTGGGATGCCAGGACTCTGGGGAGGGAGGG AACCGTGAGTTTCTTGGGGTTACCTCCTGTTGGGACCATGACCTTACCCT |
| mm4_intron_Ccdc85c_chr12_108245829 |
GTGATTCGACCTCCCTGAGCCGCAGAGCTGGGACTCTCCAGAGGGAAGCCCTGTCAGTCAGCGTGGGGGGCGGGAGAATG TTGGTCCTCGTTTAGACACAGGCTGTGGGACAGACGGTGTCCTTCATTGCGAT |
| mm4_intron_Gm3054_chr5_137165146 |
CGTAGCAGGGCAAGGTTGTATTCCCCCATGCTTCTCGAGAGGGGGGGATGGTATTAGACCCAGAGGAAGTATCAAGAGCT TCAGGATGGAGGAGG |
| mm3_intergenic_3110083C13Rik|Fgf9_chr14_58036449 |
TGGCGTTGAAAGGGTAGGACCTCTAACGAGCTGTTTCTGTCCCTAATGGCTGGGAGCCTGGAAATTAGCACAGTGCCTGC TGTTCTACATGAGTGACCCGGCCTCTGGAGAGTCCTAGTCCCTCCAGGAAGGTTCTGT |
| mm4_intergenic_Gm10858|Gtf3a_chr5_146914068 |
TTGTCTACACAGTGGCAGGCTGCATGGTGCTCACCGCTCCTCTCCCTTGGGCACCAAGATGCCTCACCCACTCTGAAGAG TGCTGGAAACCACTGACCTGGTCTTGTGGGTTCTGGCAAGGGAAACCT |
| mm4_intron_Aldh1a2_chr9_71236734 |
TGTTGCCAAACAGCTGTGACTAGTTCATAAACACTTTGGCAATTGATGAATTTCTCTTGCTCAGCTTGGATACCCAGACT CTGCAGAGGAAGGGAGTGTGAAAAGGCACTTCACTCACTCAGA |
| mm4_intron_Tsku_chr7_98355068 |
ACAGCCCAGATGTTGCTCTCCTCTGGGCCCTGGCCCTGGACTCTGCACAGGGAGGCAAAGTCTATCCTGCCATCCTCACA CAAGCCAACAAACCCCTG |
| mm4_intergenic_Gm20424|Lbx1_chr19_45201003 |
GGCATTTCAGACTGGGCTCTATTGCTCCTGAAATGCAACCCCCAAGGCCAACCTCTCCCTCTGGAGGGTCCAGGTGAAGG GGTTTGCAGGAGGAA |
| mm4_intergenic_Efnb1|Gm14812_chrX_99187257 |
TGGCCCTCTCTGAGACATGAAGGGCCTTGGCAGGATGGATGGTTCCCACCCTGAGCAGAGTCCAGGAAGAAAGCAACTGG TCAGCCCTGTCACTTT |
| mm4_intergenic_Tas2r144|Gstk1_chr6_42218614 |
AGTGACAAAGTGGCATCCGGCTTCCAGAAGTCTCCAGAGGGGAAGAAGAAATGATGAGAGAGCATGTAAAGAGAGAGTCT GTAAAGACTAGGAACACAGGGAGTTTCTCTGGG |
| mm4_intron_Atg2b_chr12_105642192 |
GCTACCAACAAACCCAAATAAACATAAATATAGCTCAGGAGCAGACAGAGAACCAGGACCCTGCAGAGGGGAGGGGTTCC TTAAAACCCTGCTGGGCAGCCAGGTATCCCTGACCAAGTGTCATCCACTCAAATCCTCCT |
| mm4_intron_Nckap5_chr1_126254831 |
ATAATAGGCCAGCCAGGGTGGCAGGAAGATGCAGCATGGTTTTTCTGTAAGCCTGGACTATCCAGAGAGTAGGAGCCACA GAGCCAGATGAATCGAGAGGG |
| mm4_intron_Pknox2_chr9_36981509 |
TGCCAGTAAAACCAACAGTTCTGAATATTGTGACCACATAAGGAAATGTTGTAAAAGGAGCCATGACTCTACCGAAGGGG GGAATCCAGAGGGACAGGAATGGGGTCACTACACCACTGTG |
| mm4_intergenic_Gm26651|Diras2_chr13_52069972 |
GTCTGTCCTCTAAGTGTCAAGCACATGCTATGACTAACTAGCAAACCCTGTGTCTCCAGAGGGAGGGAATCCTAGCATCC TGAGGCTTCAGGGGAAGGCTGTGGGATTTGA |
| mm4_intergenic_Tmem117|Nell2_chr15_95209426 |
GGCCCAGAGGATAGCAAAGGAATGTCAGCCGGCCGCTGTCCCTCCCTCCCTCTGAAGGGTACCGGAACTTAGGGGGAGCT CCTGTTTTGACA |
| mm4_intron_Pde4c_chr8_70729728 | CGAAGTGACTGGCTCTGCTTCTGTCCCCAGCTCTTGAGATTCCTGGCCTGTGATTTTGTGTGCACACGTCTAGGTC |
| mm4_intron_Ccnh_chr13_85192970 |
AGTGTGGCTCAATACAGGCCATCTCATCAGAAAATGGCTCTCTTGCCATGACTAGAATCCTAGACTCCTCCCCTCTGGTG ACTCTTGGAGTGCCTAGCCTGGTAATCCTCTGCTTCTGGCTGGACTGGGCTGAAACTGA |
| mm4_intron_Akap12_chr10_4298393 |
TGGTGCGAAAGAGATCATGGTCCAGGAATCAACAGAGTGGGGGATGTTATCAAATTCATGATCCATCCTAAAACTTTGCC TGTCCATGCAAGCTTG |
| mm4_intron_Gm21002_chr8_21392056 |
TCCTTTGGAGACCCAGAAGGATCTGCTCTTCATGAAAAATGTGAGTAATGGTACCCAGTGTGATGGATGCCTGCATTCTC CCGAGGGAGGGATGAAGATGAGTCCTAGAATCCTGGTAGAGTAATGTGGCTCCCAAGGC |
| mm4_intron_Gm15308_chr8_21529275 |
TCCTTTGGAGACCCAGAAGGATCTGCTCTTCATGAAAAATGTGAGTAATGGTACCCAGTGTGATGGATGCCTGCATTCTC CCGAGGGAGGGATGAAGATGAGTCCTAGAATCCTGGTAGAGTAATGTGGCTCCCAAGGC |
| mm4_intron_Defa2_chr8_21378760 |
TCCTTTGGAGACCCAGAAGGATCTGCTCTTCATGAAAAATGTGAGTAATGGTACCCAGTGTGATGGATGCCTGCATTCTC CCGAGGGAGGGATGAAGATGAGTCCTAGAATCCTGGTAGAGTAATGTGGCTCCCAAGGC |
| mm4_intergenic_Rbm33|Shh/9530036O11Rik_chr5_28456605 |
AGAGTTGGAAATGGGCAGGGGAAGATTGTCCCCCTCAATTCCCCAACTCTGGAGAGTGTGGGCGGAGCTTTGCATAGCAA GTACAGGGCTGGGGTCTTCCAATGAGGAGGGC |
| mm4_intergenic_D230002A01Rik|Gm24254_chr8_91903848 |
GTTGCTGCCAAAGTCAGTGGATGAGCCTGGATTGTCCGGGACTATGCAGAGGGTGGTATCCATGTGCTCTGGCTCAGTTG CCTTTCTCATGTGGAGATGGACAATGGGGGTGAGGATGGACCACAGGTC |
| mm4_intron_Arhgap8_chr15_84737324 |
CGTGTGCCCTTCCTTCTGAAAATCAAGATAGAGGTAGCCTGAGGTGCAGTGTCCCCCCCTCAGGAGGGGACAGGTTCAGC CATGTCACAGCAGCATCTGCGTAGCTCTGGCCTTTA |
| mm4_intergenic_Prdm11|Gm13802_chr2_93065246 |
AGCAGCTATTAGGAACCGGCAACTACCTGGAGCCTCCACAGGAGGGGAACTTGCACACAGTCCACGACTTCTATTAAGAT CATAGAGGACTGACACTAAACAGAGTTGGACAGCCAGCTGGTAAG |
| mm4_exon_Muc1_chr3_89231777 |
GAAATCCACCTCCCTTGGGGACTTCCCTGACCACCGCTTTCCCTTCTAGTGAATGAGATGCAGTTCCCTCCCTCTGCCCA GTCCCGGCCGGGGGTACCAGGCTGGGGCATTGCCCTGCTGGTGCTGGTCTGTAT |
| mm4_exon_Gm16998_chr10_54075903 |
GGAGTTTACGGGAAGCGCTGCCTCTCCGGGACCCGGCAGAGGCGGGGAGGTCGCGGCTCCCCTGGGCTCCCGAGGACTGG AACTGCGCCCGGGAGCCGTGTTAAGACTCG |
| mm4_intron_Mtmr3_chr11_4484476 |
CCACTGGCTTTCCCCAAAGACGAGCCCTGCAGGAGCATCCCTTCTCATCAGGAGTCTCAGAGCCCAGCTGGCCTGGACAG TCCAGAGGGGAGCACACGGCTGCAGCGGACACACCCCTGGCAGCTTCTTCCATCAGTTGC |
| mm4_intron_Gli2_chr1_119005029 |
TGATTCCCACAGGCAACACAAAAGCTTCTTCAAAGAAGGGTCTGAGAGCCCCAGGACACTCCAGGGGAGGAGAGTCAACA CCCCACTTTCTTTTACAGCTCTGGAAATGCCCG |
| mm4_intergenic_Ryr2|Mtr_chr13_12164622 |
ACACTGCAGCAGTAACTCACATCCAGGCCACTCCAGAGAGGAGGAACATGTAGTGCACCTTAGTGGACATAAAAGGACAG TCCGAACCACC |
| mm4_exon_Taf11_chr17_27908880 |
ACTGCAGAAGTAAAACTCTCAGGTCTTCCCTCCAGGAGGCACCAGAGGGAGGGATTTTTCAAGTCTGGTTCTAGATCTCC GCGC |
| mm4_exon_Map3k3_chr11_106123795 |
AGCTCACACTTTTGCCTCCTCTCTTATAGACTAGTTCCTCTCCCCACTCTGGAGTGTCCAGGCAGGTTCGGATCAAGCCT TCCCAGTCTGC |
| mm3_intergenic_Padi1|4930515B02Rik_chr4_140871160 |
CTCCAATGTCCTGGGAGCTCCTTGCGGGCTGAATCCCAACCTTGTAATTAAGTGTAGGGCTGGGCACTGCTTCCTGGACG CTCCACAGGGGGGGCAGTCTCGGAAACACAGAGGCA |
| mm2_intron_Ppa1_chr10_61653065 |
CCATAAGACTCCGCCGTCTCAGAGAACCCTGAGAAATGATGTTTTGTAGGACAGCCAAGGGTCATCTCCATCCCCCCTTC TGGAGTGTCCCGAGGCAGCTGTGGTAACCCTTGGCTGAC |