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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313819_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313819_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intron_Cdh13_chr8_119316410_F | Primer3: not found at this Tm | N.d. | 0.57 |
| mm4_intron_Cdh13_chr8_119316410_R | Primer3: not found at this Tm | N.d. | 0.57 |
| mm4_intron_Dgki_chr6_36850349_F | TCGTCGGCAGCGTCGGCTCTATCAGGCGTAGAACT | 59.0 | 0.51 |
| mm4_intron_Dgki_chr6_36850349_R | GTCTCGTGGGCTCGGGCTGCCCCAATAACTGCCTA | 60.1 | 0.51 |
| mm4_intergenic_Gm24696|Myc_chr15_61984263_F | TCGTCGGCAGCGTCTTCTAGGGTCTCTGCAGGCT | 59.9 | 0.49 |
| mm4_intergenic_Gm24696|Myc_chr15_61984263_R | GTCTCGTGGGCTCGGTGGGGTGGGGAAAATCAAGG | 59.8 | 0.49 |
| mm3_intron_Efcab6_chr15_83869214_F | Primer3: not found at this Tm | N.d. | 0.46 |
| mm3_intron_Efcab6_chr15_83869214_R | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_4930578I07Rik|Gm24258_chr14_66950799_F | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intergenic_4930578I07Rik|Gm24258_chr14_66950799_R | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intergenic_Gm26497|Piezo1_chr8_122548801_F | TCGTCGGCAGCGTCATGGGACTAGGGCATCACCT | 60.0 | 0.45 |
| mm4_intergenic_Gm26497|Piezo1_chr8_122548801_R | GTCTCGTGGGCTCGGTGGGGTGCTTAGCCTCTTTG | 59.9 | 0.45 |
| mm4_intron_Kazn_chr4_142150193_F | Primer3: not found at this Tm | N.d. | 0.44 |
| mm4_intron_Kazn_chr4_142150193_R | Primer3: not found at this Tm | N.d. | 0.44 |
| mm4_intron_Usp2_chr9_44074416_F | Primer3: not found at this Tm | N.d. | 0.44 |
| mm4_intron_Usp2_chr9_44074416_R | Primer3: not found at this Tm | N.d. | 0.44 |
| mm4_intron_Ass1_chr2_31509703_F | TCGTCGGCAGCGTCGCGTGTTCATGCATGTGTGT | 60.0 | 0.42 |
| mm4_intron_Ass1_chr2_31509703_R | GTCTCGTGGGCTCGGGGCCTGCAGTTGAAAACCTG | 59.9 | 0.42 |
| mm4_exon_Nynrin/Gm26751_chr14_55871428_F | TCGTCGGCAGCGTCTGCAACTGGATCTTCAGCGT | 59.9 | 0.41 |
| mm4_exon_Nynrin/Gm26751_chr14_55871428_R | GTCTCGTGGGCTCGGGATGAGGTAGTGAAGCCCCG | 59.8 | 0.41 |
| mm3_intergenic_Scaf4|Hunk_chr16_90292832_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm3_intergenic_Scaf4|Hunk_chr16_90292832_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm10293|Gm22798_chr3_52615205_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_Gm10293|Gm22798_chr3_52615205_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_Cldn4|Cldn3/Wbscr25_chr5_134967530_F | TCGTCGGCAGCGTCAAACCGATTCCACCCTGACC | 59.9 | 0.36 |
| mm4_intergenic_Cldn4|Cldn3/Wbscr25_chr5_134967530_R | GTCTCGTGGGCTCGGGCCTTGTTCTTGCGTGACAG | 60.0 | 0.36 |
| mm4_intergenic_Gyg|Cpa3_chr3_20191592_F | TCGTCGGCAGCGTCTCCAATTCTATTCCCTTCTCAGCA | 59.5 | 0.35 |
| mm4_intergenic_Gyg|Cpa3_chr3_20191592_R | GTCTCGTGGGCTCGGGATTCCTGGGCTGCAGATCA | 59.8 | 0.35 |
| mm4_intergenic_Gm20696/Foxp1|Gm20705_chr6_99382634_F | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intergenic_Gm20696/Foxp1|Gm20705_chr6_99382634_R | Primer3: not found at this Tm | N.d. | 0.34 |
| mm3_intron_Serpina1f_chr12_103691088_F | TCGTCGGCAGCGTCCTTCAGGCAGACTCAGGGTG | 60.0 | 0.34 |
| mm3_intron_Serpina1f_chr12_103691088_R | GTCTCGTGGGCTCGGGTGAGCAGTTGTACTCGGCT | 60.0 | 0.34 |
| mm4_intergenic_1700122O11Rik|1700067P10Rik_chr17_48038516_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_1700122O11Rik|1700067P10Rik_chr17_48038516_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm3_intron_Aldh1a2_chr9_71236735_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm3_intron_Aldh1a2_chr9_71236735_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm3_intergenic_Slc10a1|Smoc1_chr12_80986904_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm3_intergenic_Slc10a1|Smoc1_chr12_80986904_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intron_Chrna4_chr2_181042420_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intron_Chrna4_chr2_181042420_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intergenic_Gm24291|Mon1b_chr8_113551665_F | TCGTCGGCAGCGTCGCGTTGTTCTGAACCGGAAG | 59.7 | 0.30 |
| mm3_intergenic_Gm24291|Mon1b_chr8_113551665_R | GTCTCGTGGGCTCGGCCTCTCCTTCCTCCCTTGGA | 59.9 | 0.30 |
| mm4_intergenic_Gm24231|Gm24222_chr8_15314732_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Gm24231|Gm24222_chr8_15314732_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_Arhgef6_chrX_57249372_F | TCGTCGGCAGCGTCTAGGAAGAGGGGAGCATTCC | 58.1 | 0.27 |
| mm4_intron_Arhgef6_chrX_57249372_R | GTCTCGTGGGCTCGGGGGCTGATTGCTTTTCTGGC | 60.1 | 0.27 |
| mm4_intergenic_Gm26480|Gm6863_chr12_96819960_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm26480|Gm6863_chr12_96819960_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm3_intron_2310081O03Rik_chr4_56223674_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm3_intron_2310081O03Rik_chr4_56223674_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_3100003L05Rik_chr7_124659987_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_3100003L05Rik_chr7_124659987_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm2_intergenic_Gm7168|Dact2_chr17_14172760_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm2_intergenic_Gm7168|Dact2_chr17_14172760_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Ccdc6_chr10_70127946_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Ccdc6_chr10_70127946_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm25778|Ppapdc1a_chr7_129129292_F | TCGTCGGCAGCGTCCAGAACCAGGCCTCTCAGTG | 60.0 | 0.23 |
| mm4_intergenic_Gm25778|Ppapdc1a_chr7_129129292_R | GTCTCGTGGGCTCGGCTGGGAGTGGAGACCAAACA | 59.2 | 0.23 |
| mm4_intron_Arhgap42_chr9_9054647_F | TCGTCGGCAGCGTCTGCTGGACTCCAAAGCTGAG | 59.9 | 0.23 |
| mm4_intron_Arhgap42_chr9_9054647_R | GTCTCGTGGGCTCGGTCATAATCTGCTTCCATGTGGGA | 59.5 | 0.23 |
| mm4_intergenic_Cmklr1|1700069L16Rik_chr5_113684516_F | TCGTCGGCAGCGTCGAGCGTGAGTGTCCTTCAGT | 59.6 | 0.23 |
| mm4_intergenic_Cmklr1|1700069L16Rik_chr5_113684516_R | GTCTCGTGGGCTCGGTCCAGTGCCAGGAGAGCTAA | 60.2 | 0.23 |
| mm2_exon_Synpo_chr18_60601424_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm2_exon_Synpo_chr18_60601424_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Grin1_chr2_25308733_F | TCGTCGGCAGCGTCAGCGTGCGTGTACTGGTAAT | 59.7 | 0.23 |
| mm4_intron_Grin1_chr2_25308733_R | GTCTCGTGGGCTCGGTGGAATTAGCTGCCCCACTC | 59.7 | 0.23 |
| mm3_exon_Shbg_chr11_69615559_F | TCGTCGGCAGCGTCTACCTGGTAAAGCCCCAAGG | 59.0 | 0.22 |
| mm3_exon_Shbg_chr11_69615559_R | GTCTCGTGGGCTCGGGGTCTTGAGCCAAGGACCAA | 59.8 | 0.22 |
| mm4_intergenic_Olfr373|Olfr374_chr8_72103180_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Olfr373|Olfr374_chr8_72103180_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Cyp2b13|Cyp2b9_chr7_26139183_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Cyp2b13|Cyp2b9_chr7_26139183_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Cyp2b10|Cyp2b13_chr7_26019481_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Cyp2b10|Cyp2b13_chr7_26019481_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Galnt2_chr8_124287509_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Galnt2_chr8_124287509_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm2_intron_Slc41a2_chr10_83286591_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm2_intron_Slc41a2_chr10_83286591_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm3_intergenic_Gm13232|Gm13244_chr4_145745018_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm3_intergenic_Gm13232|Gm13244_chr4_145745018_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_4933407E24Rik|3100002H09Rik_chr4_124594999_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_4933407E24Rik|3100002H09Rik_chr4_124594999_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Olfr771|Gm25807_chr10_129170289_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Olfr771|Gm25807_chr10_129170289_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm3_intergenic_Atp2c1|Gm5621_chr9_105553784_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intergenic_Atp2c1|Gm5621_chr9_105553784_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Ulk1_chr5_110796545_F | TCGTCGGCAGCGTCGCTCAGGAGACTTGGGACAC | 60.0 | 0.18 |
| mm4_intron_Ulk1_chr5_110796545_R | GTCTCGTGGGCTCGGCTGGAGGCCCTCTGTAGAGT | 60.0 | 0.18 |
| mm4_intergenic_Gm23980|Gm22810_chr15_24756776_F | TCGTCGGCAGCGTCGCAAGGTAGCCATGAAGAACC | 59.2 | 0.18 |
| mm4_intergenic_Gm23980|Gm22810_chr15_24756776_R | GTCTCGTGGGCTCGGCTGAATGCAGGAGCTGAGAGT | 59.7 | 0.18 |
| mm4_intron_Hoxb3_chr11_96326662_F | TCGTCGGCAGCGTCTCTGGACAATCAAAGCTGACCA | 59.8 | 0.18 |
| mm4_intron_Hoxb3_chr11_96326662_R | GTCTCGTGGGCTCGGCTCGGAGGTTTCGAGGCAG | 60.1 | 0.18 |
| mm4_intron_Bai2_chr4_130016227_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Bai2_chr4_130016227_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm22227|Zfp703_chr8_26373151_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm22227|Zfp703_chr8_26373151_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm22527|Rnf144a_chr12_26243032_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm22527|Rnf144a_chr12_26243032_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Tpd52_chr3_8993109_F | TCGTCGGCAGCGTCTTGGAGTCTTCTAGCACCGC | 59.7 | 0.16 |
| mm4_intron_Tpd52_chr3_8993109_R | GTCTCGTGGGCTCGGAGAACGGATGCCTCAGGTTG | 60.0 | 0.16 |
| mm4_intron_Rbms3_chr9_116926053_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Rbms3_chr9_116926053_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Nck2|1500015O10Rik_chr1_43703404_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Nck2|1500015O10Rik_chr1_43703404_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Susd4_chr1_182834707_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Susd4_chr1_182834707_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Mirg/Mir377_chr12_109740401_F | TCGTCGGCAGCGTCGGGGCTCATCGGAGGTAATG | 59.9 | 0.13 |
| mm4_exon_Mirg/Mir377_chr12_109740401_R | GTCTCGTGGGCTCGGAATCAAACGTCAGCACAGGC | 59.4 | 0.13 |
| mm4_intergenic_Gm7180|Pde8a_chr7_81237129_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm7180|Pde8a_chr7_81237129_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Tmprss3_chr17_31183394_F | TCGTCGGCAGCGTCTGTTTGCCTAGCACCTGATGT | 59.9 | 0.13 |
| mm4_intron_Tmprss3_chr17_31183394_R | GTCTCGTGGGCTCGGAGAGGCCTTGCTGCAATGAA | 60.2 | 0.13 |
| mm4_intron_Thsd7a_chr6_12383784_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Thsd7a_chr6_12383784_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Dlgap3_chr4_127172323_F | TCGTCGGCAGCGTCTTCAGTCTGAAGGCTGCTGG | 59.9 | 0.12 |
| mm4_intron_Dlgap3_chr4_127172323_R | GTCTCGTGGGCTCGGTTAGCAACGATGAGCTGGCA | 60.0 | 0.12 |
| mm4_intergenic_Gm10040|Gm17641/1110032F04Rik_chr3_68818434_F | TCGTCGGCAGCGTCGGTTCAACCCAGGGCTGTAG | 60.3 | 0.12 |
| mm4_intergenic_Gm10040|Gm17641/1110032F04Rik_chr3_68818434_R | GTCTCGTGGGCTCGGTGGCACCTGTGACCTTCAAA | 59.7 | 0.12 |
| mm4_intergenic_Gm26651|Diras2_chr13_52069973_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm26651|Diras2_chr13_52069973_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intron_Sdk2_chr11_113805851_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intron_Sdk2_chr11_113805851_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Cntn6_chr6_104501777_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Cntn6_chr6_104501777_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_4933405L10Rik|Gfod2_chr8_105710958_F | TCGTCGGCAGCGTCCTGTAGCAGGTGAGCCAGAC | 60.1 | 0.12 |
| mm4_intergenic_4933405L10Rik|Gfod2_chr8_105710958_R | GTCTCGTGGGCTCGGATCCCTAACCAAAGCCGTCT | 58.7 | 0.12 |
| mm4_intergenic_Gm22521|Gm25702_chr15_62829785_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm22521|Gm25702_chr15_62829785_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Ifngr2_chr16_91560332_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Ifngr2_chr16_91560332_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Papss1_chr3_131614055_F | TCGTCGGCAGCGTCTACACTGTGATTGCCCCGTG | 60.3 | 0.11 |
| mm4_intron_Papss1_chr3_131614055_R | GTCTCGTGGGCTCGGGCCAAGAGGAGTGTAGTGGC | 60.3 | 0.11 |
| mm4_intron_Nxnl2_chr13_51172982_F | TCGTCGGCAGCGTCAGTTGAGATGGTGCTGGTGG | 59.9 | 0.11 |
| mm4_intron_Nxnl2_chr13_51172982_R | GTCTCGTGGGCTCGGCTACCATCCTCGCCAGCAAC | 60.8 | 0.11 |
| mm4_intergenic_Ctnna3|Gm22829_chr10_65033235_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Ctnna3|Gm22829_chr10_65033235_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Vmn1r-ps149|Gm26384_chr17_21272596_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Vmn1r-ps149|Gm26384_chr17_21272596_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intron_Fbxo21_chr5_118003644_F | TCGTCGGCAGCGTCTTCCTCATTGCCCAGTGGTC | 59.9 | 0.11 |
| mm3_intron_Fbxo21_chr5_118003644_R | GTCTCGTGGGCTCGGGTCCTGGTGCAGCAGAGATT | 60.0 | 0.11 |
| mm4_intergenic_Ucn3|Gm22460_chr13_3947836_F | TCGTCGGCAGCGTCCTCTCTTGAAGCCAGACCCC | 59.7 | 0.10 |
| mm4_intergenic_Ucn3|Gm22460_chr13_3947836_R | GTCTCGTGGGCTCGGAGTCCTGTCAGCCAATGGAA | 58.9 | 0.10 |
| mm4_intergenic_Gm22000|Myl4/Gm22000_chr11_104559907_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm22000|Myl4/Gm22000_chr11_104559907_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Myh3_chr11_67095861_F | TCGTCGGCAGCGTCGGCTGCGTAGGGTTTACAGT | 60.0 | 0.10 |
| mm4_intron_Myh3_chr11_67095861_R | GTCTCGTGGGCTCGGCATTGGGCCAAATGGGGTTG | 60.0 | 0.10 |
| mm4_exon_Tead4_chr6_128271025_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Tead4_chr6_128271025_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Slc25a20|Prkar2a_chr9_108688561_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Slc25a20|Prkar2a_chr9_108688561_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_mmu-mir-6393|Zdhhc25_chr15_87884816_F | TCGTCGGCAGCGTCCAGGAGAGTCAGAGGAGCCT | 60.0 | 0.10 |
| mm4_intergenic_mmu-mir-6393|Zdhhc25_chr15_87884816_R | GTCTCGTGGGCTCGGTGGCATAATGGCTTCTCAGCT | 59.7 | 0.10 |
| mm4_intergenic_Gm13237|Gm13233_chr4_146579900_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm13237|Gm13233_chr4_146579900_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm13167|Gm13169_chr4_146239255_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm13167|Gm13169_chr4_146239255_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Lep|Gm25589_chr6_29104937_F | TCGTCGGCAGCGTCGATTTTCAGCAAGCCCAAAGC | 58.9 | 0.10 |
| mm4_intergenic_Lep|Gm25589_chr6_29104937_R | GTCTCGTGGGCTCGGTCCTCCTCCCCACTCATCTG | 60.0 | 0.10 |
| mm4_exon_Olr1_chr6_129485759_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Olr1_chr6_129485759_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_n-R5s220|Cacna1e_chr1_154382958_F | TCGTCGGCAGCGTCTCCCTTGCTTCCCAAATGTT | 57.6 | 0.10 |
| mm4_intergenic_n-R5s220|Cacna1e_chr1_154382958_R | GTCTCGTGGGCTCGGAGTGTAAGGTGCAAGGGTCA | 58.8 | 0.10 |
| mm4_intergenic_Gm16065|Tbx5_chr5_119795634_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm16065|Tbx5_chr5_119795634_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gstt1|Gstt4_chr10_75811428_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gstt1|Gstt4_chr10_75811428_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm7275|Gm7204_chr16_48160036_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm7275|Gm7204_chr16_48160036_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Fbxo7|Gm24430_chr10_86037368_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Fbxo7|Gm24430_chr10_86037368_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Parva_chr7_112557589_F | TCGTCGGCAGCGTCCCTAGCTCTCACACCCTCCT | 60.0 | 0.08 |
| mm4_intron_Parva_chr7_112557589_R | GTCTCGTGGGCTCGGCTAGACTGCTGGTGACCGAC | 59.8 | 0.08 |
| mm4_intron_Pik3c2g_chr6_139912555_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Pik3c2g_chr6_139912555_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Map3k4_chr17_12235355_F | TCGTCGGCAGCGTCTGAGTGCTGAGGGAGTGGTA | 59.8 | 0.08 |
| mm4_intron_Map3k4_chr17_12235355_R | GTCTCGTGGGCTCGGGCTGTACCATCCCAGACAGG | 59.8 | 0.08 |
| mm4_intron_Stmn2_chr3_8551222_F | TCGTCGGCAGCGTCGTAGGGTCAGAACTGGGTGC | 60.0 | 0.08 |
| mm4_intron_Stmn2_chr3_8551222_R | GTCTCGTGGGCTCGGGAAGTAGAGGCTCCTCCCCA | 60.0 | 0.08 |
| mm4_exon_Pklr/Hcn3_chr3_89146130_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Pklr/Hcn3_chr3_89146130_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Kcnh1_chr1_192445287_F | TCGTCGGCAGCGTCTGGCTGTTCTAGGTGCACAG | 59.9 | 0.08 |
| mm4_intron_Kcnh1_chr1_192445287_R | GTCTCGTGGGCTCGGAAATGAGGGGTAAGCACGCA | 59.9 | 0.08 |
| mm4_intron_Scai_chr2_39077493_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Scai_chr2_39077493_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm16155|Tmcc3_chr10_94426566_F | TCGTCGGCAGCGTCGGTGAGAGATGCAGGCCAAT | 60.1 | 0.07 |
| mm4_intergenic_Gm16155|Tmcc3_chr10_94426566_R | GTCTCGTGGGCTCGGTCTGTCCCTATTCAGCGGGT | 60.3 | 0.07 |
| mm4_intron_Snx9_chr17_5925817_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Snx9_chr17_5925817_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm5218|Gm23880_chr15_81523282_F | TCGTCGGCAGCGTCCTCCGCTGCAAGCCATTCT | 60.7 | 0.07 |
| mm4_intergenic_Gm5218|Gm23880_chr15_81523282_R | GTCTCGTGGGCTCGGGGAGCTCCGCCCTCATCTAG | 61.5 | 0.07 |
| mm4_intergenic_Erv3|Lamr1-ps1_chr2_131892620_F | TCGTCGGCAGCGTCTGGTGTGCAAAACCCAGACT | 60.0 | 0.07 |
| mm4_intergenic_Erv3|Lamr1-ps1_chr2_131892620_R | GTCTCGTGGGCTCGGTGGCTCCTTTCTCCGGTTTC | 59.9 | 0.07 |
| mm4_intron_Ccdc65_chr15_98712635_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Ccdc65_chr15_98712635_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm12462|Pax5_chr4_44677301_F | TCGTCGGCAGCGTCTGCCTGCCACTCCTTTTCAT | 59.8 | 0.06 |
| mm4_intergenic_Gm12462|Pax5_chr4_44677301_R | GTCTCGTGGGCTCGGCCTCATCCCCTGGCATCATC | 59.9 | 0.06 |
| mm4_intergenic_Zfp787|Zfp444_chr7_6169453_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Zfp787|Zfp444_chr7_6169453_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_BC049730|Gm4763_chr7_24717998_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_BC049730|Gm4763_chr7_24717998_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Paqr5_chr9_61986807_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Paqr5_chr9_61986807_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Myh9_chr15_77804081_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Myh9_chr15_77804081_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Dnah2_chr11_69496625_F | TCGTCGGCAGCGTCAGATGGTGGCAAAGAGGTGG | 59.9 | 0.06 |
| mm4_exon_Dnah2_chr11_69496625_R | GTCTCGTGGGCTCGGCTCGAGGCTTGTGTCTCCAG | 60.1 | 0.06 |
| mm4_intergenic_Gm20628/Hist2h3b/Hist2h2bb|Hist2h2bb_chr3_96276238_F | TCGTCGGCAGCGTCCCTGCTCATTCGTCGGGAAT | 60.1 | 0.06 |
| mm4_intergenic_Gm20628/Hist2h3b/Hist2h2bb|Hist2h2bb_chr3_96276238_R | GTCTCGTGGGCTCGGGGTATTCACCACACTGGCCT | 59.6 | 0.06 |
| mm4_intergenic_Gm8994|Gm15476_chr6_136359090_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm8994|Gm15476_chr6_136359090_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Zcchc6|Gas1_chr13_60014358_F | TCGTCGGCAGCGTCGTGGGCTTTGCGAAAACTCC | 60.3 | 0.05 |
| mm4_intergenic_Zcchc6|Gas1_chr13_60014358_R | GTCTCGTGGGCTCGGGGGTTGGAGCCATCAGTCTG | 60.3 | 0.05 |
| mm4_intergenic_1110059M19Rik|Gm14606_chrX_45153346_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_1110059M19Rik|Gm14606_chrX_45153346_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm10110|Gm25495_chr14_89926474_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm10110|Gm25495_chr14_89926474_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gm16168_chr17_10564418_F | TCGTCGGCAGCGTCAGCAAACCTAGTGACCAGCA | 59.2 | 0.05 |
| mm4_intron_Gm16168_chr17_10564418_R | GTCTCGTGGGCTCGGCAGATGTCAGAACAGGCCGA | 59.7 | 0.05 |
| mm4_intergenic_Runx1|AC124326.1_chr16_92980229_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Runx1|AC124326.1_chr16_92980229_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Edil3_chr13_89115985_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Edil3_chr13_89115985_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_CT030233.1|Gm20675_chr14_67189164_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_CT030233.1|Gm20675_chr14_67189164_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm12439|Gm12438_chr4_48720103_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm12439|Gm12438_chr4_48720103_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Mccc2_chr13_99951085_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Mccc2_chr13_99951085_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Tia1_chr6_86408623_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intron_Tia1_chr6_86408623_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Gm26563|Gm26563/Suz12_chr11_80021819_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Gm26563|Gm26563/Suz12_chr11_80021819_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Adamtsl5|Plk5_chr10_80350887_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Adamtsl5|Plk5_chr10_80350887_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm22277|Lrrc30_chr17_67629387_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm22277|Lrrc30_chr17_67629387_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Lep_chr6_29070426_F | TCGTCGGCAGCGTCAAGAGTCATCAGGGCTGCAC | 60.0 | 0.04 |
| mm4_intron_Lep_chr6_29070426_R | GTCTCGTGGGCTCGGCATTAGGGTCAAAGCCGTGC | 59.5 | 0.04 |
| mm2_intergenic_E030044B06Rik|mmu-mir-8092/Zfp518a_chr19_40874233_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm2_intergenic_E030044B06Rik|mmu-mir-8092/Zfp518a_chr19_40874233_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_5S_rRNA|Rasa2_chr9_96526758_F | TCGTCGGCAGCGTCCTCCCTGGGTTCCTTAGGGA | 59.9 | 0.04 |
| mm4_intergenic_5S_rRNA|Rasa2_chr9_96526758_R | GTCTCGTGGGCTCGGACCTCCCAAGATCTGCTCCT | 59.9 | 0.04 |
| mm3_intergenic_Naif1|Gm13412_chr2_32517275_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Naif1|Gm13412_chr2_32517275_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Gm4487|Gm24073_chr14_113620142_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Gm4487|Gm24073_chr14_113620142_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ak9_chr10_41380811_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ak9_chr10_41380811_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ext2_chr2_93797405_F | TCGTCGGCAGCGTCGGATCGCTCTTCCTGTCCAG | 59.8 | 0.04 |
| mm4_intron_Ext2_chr2_93797405_R | GTCTCGTGGGCTCGGGGCCCACCCTGAAGTTGTTA | 59.8 | 0.04 |
| mm4_intron_Magi1_chr6_93929116_F | TCGTCGGCAGCGTCACGCTAGCTGACCCAGTTTC | 60.0 | 0.04 |
| mm4_intron_Magi1_chr6_93929116_R | GTCTCGTGGGCTCGGTGGGATACTTCCAAGTCTGTGG | 59.4 | 0.04 |
| mm3_intergenic_Tm9sf4|Tspyl3_chr2_153220020_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Tm9sf4|Tspyl3_chr2_153220020_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Fars2|Gm26395_chr13_36555097_F | TCGTCGGCAGCGTCTGTGGCTTCTGTCCAGTGTC | 59.8 | 0.03 |
| mm4_intergenic_Fars2|Gm26395_chr13_36555097_R | GTCTCGTGGGCTCGGTGTAGGGACCAATCTGCAGC | 59.7 | 0.03 |
| mm3_intergenic_Kctd3|Kcnk2_chr1_189088959_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Kctd3|Kcnk2_chr1_189088959_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Bmper|Npsr1_chr9_23697125_F | TCGTCGGCAGCGTCTACAAACTCCCCTGCACCAC | 59.8 | 0.03 |
| mm4_intergenic_Bmper|Npsr1_chr9_23697125_R | GTCTCGTGGGCTCGGGGCACCTCCAGCATCAGATT | 60.1 | 0.03 |
| mm4_intergenic_Gm26104|Cep170_chr1_176715452_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm26104|Cep170_chr1_176715452_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Amz1_chr5_140752245_F | TCGTCGGCAGCGTCCGCCATGGAGGAGTATGGAC | 59.9 | 0.03 |
| mm4_exon_Amz1_chr5_140752245_R | GTCTCGTGGGCTCGGCCCTGTGAACATCTCCCACC | 60.0 | 0.03 |
| mm4_intergenic_Tmem131|Rpl12-ps1_chr1_36943091_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tmem131|Rpl12-ps1_chr1_36943091_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm5759|Gm8880_chrX_88909406_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm5759|Gm8880_chrX_88909406_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Atxn1_chr13_45818687_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Atxn1_chr13_45818687_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Rbm33|Shh/9530036O11Rik_chr5_28456604_F | TCGTCGGCAGCGTCAGAGTTGGAAATGGGCAGGG | 59.9 | 0.02 |
| mm4_intergenic_Rbm33|Shh/9530036O11Rik_chr5_28456604_R | GTCTCGTGGGCTCGGGCCCTCCTCATTGGAAGACC | 60.1 | 0.02 |
| mm3_intergenic_5430435G22Rik|Slc26a9_chr1_131742805_F | TCGTCGGCAGCGTCGGGCTCCAAGACAGTGTTCA | 59.8 | 0.02 |
| mm3_intergenic_5430435G22Rik|Slc26a9_chr1_131742805_R | GTCTCGTGGGCTCGGGTCGAGGTGTAGCCAGGATG | 59.8 | 0.02 |
| mm4_intergenic_Acaa2|Gm24559_chr18_74901972_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Acaa2|Gm24559_chr18_74901972_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Zfyve27_chr19_42174795_F | TCGTCGGCAGCGTCGTCTGAGGCTATGCGGAGAG | 59.6 | 0.02 |
| mm4_intron_Zfyve27_chr19_42174795_R | GTCTCGTGGGCTCGGCAGACCAGTGATCCCTCTGC | 59.8 | 0.02 |
| mm4_intron_E230008N13Rik_chr4_45919193_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_E230008N13Rik_chr4_45919193_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Plxnc1_chr10_94802828_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Plxnc1_chr10_94802828_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gfra2|Gm9192_chr14_71740223_F | TCGTCGGCAGCGTCGGTTCGCACAAGACATGTCAC | 60.0 | 0.02 |
| mm4_intergenic_Gfra2|Gm9192_chr14_71740223_R | GTCTCGTGGGCTCGGAAAAGCATCTGGAGTGGGCA | 59.8 | 0.02 |
| mm4_exon_Rtn2_chr7_19287094_F | TCGTCGGCAGCGTCCTGGAGGAACTGAGGCTGC | 60.0 | 0.02 |
| mm4_exon_Rtn2_chr7_19287094_R | GTCTCGTGGGCTCGGCTGGCCTCCAATCCATCAGG | 60.1 | 0.02 |
| mm4_intergenic_Ppargc1b|Gm25301_chr18_61397595_F | TCGTCGGCAGCGTCCTAAGCCTGGGTTAGCCACC | 60.1 | 0.02 |
| mm4_intergenic_Ppargc1b|Gm25301_chr18_61397595_R | GTCTCGTGGGCTCGGGTCCAGCTTCTTCCCCACAG | 60.3 | 0.02 |
| mm4_intergenic_Prdx6|Tnfsf4_chr1_161288470_F | TCGTCGGCAGCGTCTCTCTGGCTGTGCTCTCTCT | 59.9 | 0.02 |
| mm4_intergenic_Prdx6|Tnfsf4_chr1_161288470_R | GTCTCGTGGGCTCGGATTGGGAGTGAGCCTGTGAC | 59.6 | 0.02 |
| mm4_intron_Celsr1_chr15_85942654_F | TCGTCGGCAGCGTCAAACGCAGGGTAGTGTCACT | 59.2 | 0.02 |
| mm4_intron_Celsr1_chr15_85942654_R | GTCTCGTGGGCTCGGGGGGTGTTGAGGAGAACTGT | 59.2 | 0.02 |
| mm3_intron_Ncor2_chr5_125044176_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Ncor2_chr5_125044176_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Gm10612/Cbfa2t3_chr8_122698856_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Gm10612/Cbfa2t3_chr8_122698856_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm17118|Cacna2d2_chr9_107460850_F | TCGTCGGCAGCGTCCCAGCTAAGTCTGCCAGTCC | 60.1 | 0.01 |
| mm4_intergenic_Gm17118|Cacna2d2_chr9_107460850_R | GTCTCGTGGGCTCGGGAGCTTGGGGCAGACAAGAT | 60.0 | 0.01 |
| mm4_intergenic_Nbea|Gm25727_chr3_56311846_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Nbea|Gm25727_chr3_56311846_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Slc4a5_chr6_83272634_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Slc4a5_chr6_83272634_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Reep5|Pkd2l2_chr18_34405504_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Reep5|Pkd2l2_chr18_34405504_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Slc1a6|Olfr1356_chr10_78837698_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Slc1a6|Olfr1356_chr10_78837698_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Tnfaip1_chr11_78526135_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Tnfaip1_chr11_78526135_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Sfxn5_chr6_85220072_F | TCGTCGGCAGCGTCGAGGGAGCTGGATGTGTACG | 59.8 | 0.01 |
| mm4_intron_Sfxn5_chr6_85220072_R | GTCTCGTGGGCTCGGCTTCGTGGGCTCATTCCCTT | 60.0 | 0.01 |
| mm4_intron_Lasp1_chr11_97808236_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Lasp1_chr11_97808236_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ahdc1_chr4_133031804_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ahdc1_chr4_133031804_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Smyd3_chr1_179290133_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Smyd3_chr1_179290133_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ano10_chr9_122265208_F | TCGTCGGCAGCGTCTGGCTACCACTTTCACACCC | 59.8 | 0.01 |
| mm3_intron_Ano10_chr9_122265208_R | GTCTCGTGGGCTCGGCCTTCACAGTAGCTTGCCCT | 59.6 | 0.01 |
| mm4_intron_Atp8b5_chr4_43323622_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Atp8b5_chr4_43323622_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Irs4|Irs4/Gm15295_chrX_141720753_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Irs4|Irs4/Gm15295_chrX_141720753_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ptgfrn|Gm12486_chr3_101131475_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ptgfrn|Gm12486_chr3_101131475_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mbtps2|Mbtps2/Yy2_chrX_157587082_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mbtps2|Mbtps2/Yy2_chrX_157587082_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nhp2l1|4930407I10Rik_chr15_82058114_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nhp2l1|4930407I10Rik_chr15_82058114_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nlgn2|Tmem256_chr11_69837853_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nlgn2|Tmem256_chr11_69837853_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rassf5|Ikbke_chr1_131251285_F | TCGTCGGCAGCGTCCTCTCTGGCCACTCTCGTTC | 59.8 | 0.00 |
| mm4_intergenic_Rassf5|Ikbke_chr1_131251285_R | GTCTCGTGGGCTCGGACTGCCTTTTAGAGCCTTGGT | 59.5 | 0.00 |
| mm4_exon_Nhlrc4/Pigq_chr17_25944526_F | TCGTCGGCAGCGTCCACAGGTGTCTGGGTGTCTG | 60.2 | 0.00 |
| mm4_exon_Nhlrc4/Pigq_chr17_25944526_R | GTCTCGTGGGCTCGGCTCTGCATGCGATTTGAGCC | 59.9 | 0.00 |
| mm4_intron_Ssbp4_chr8_70604885_F | TCGTCGGCAGCGTCGCATCAGCATGTGCCATCAG | 59.9 | 0.00 |
| mm4_intron_Ssbp4_chr8_70604885_R | GTCTCGTGGGCTCGGTGAAAATGCCAGGAGGACCC | 59.9 | 0.00 |
| mm4_intron_Mrc2_chr11_105331462_F | TCGTCGGCAGCGTCTATGGGCCCTGCAATGTTCC | 60.3 | 0.00 |
| mm4_intron_Mrc2_chr11_105331462_R | GTCTCGTGGGCTCGGCCCTCTGTGTTGACCTCTGC | 60.3 | 0.00 |
| mm4_intron_Mgll_chr6_88769972_F | TCGTCGGCAGCGTCGCAGCTGCTCCTATGACTCA | 59.5 | 0.00 |
| mm4_intron_Mgll_chr6_88769972_R | GTCTCGTGGGCTCGGGGGCAGTAGATTCCTGTCCG | 59.8 | 0.00 |
| mm4_intron_L3mbtl3_chr10_26305159_F | TCGTCGGCAGCGTCAGCAAGATGAAAGACACCCA | 57.0 | 0.00 |
| mm4_intron_L3mbtl3_chr10_26305159_R | GTCTCGTGGGCTCGGTCGATGACCAGCCATTGCAT | 60.1 | 0.00 |
| mm4_intron_Hsd3b1_chr3_98859409_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Hsd3b1_chr3_98859409_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gpr142_chr11_114802823_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gpr142_chr11_114802823_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tha1|Gm11725_chr11_117879894_F | TCGTCGGCAGCGTCGCTGGATGAGTCTTGCGTCA | 60.3 | 0.00 |
| mm4_intergenic_Tha1|Gm11725_chr11_117879894_R | GTCTCGTGGGCTCGGCCAGACACAAAGCAAGGTGC | 59.9 | 0.00 |
| mm4_intergenic_Oaf|D630033O11Rik_chr9_43255585_F | TCGTCGGCAGCGTCTAGGAGGGGAGCAGAAGACC | 60.0 | 0.00 |
| mm4_intergenic_Oaf|D630033O11Rik_chr9_43255585_R | GTCTCGTGGGCTCGGTTCACAGAAGCTCCTGCAGG | 59.9 | 0.00 |
| mm4_intergenic_Nkd2|Trip13_chr13_73876110_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nkd2|Trip13_chr13_73876110_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Kif2b|Gm11498_chr11_91632238_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Kif2b|Gm11498_chr11_91632238_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23649|Lclat1_chr17_73005997_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23649|Lclat1_chr17_73005997_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Atp4b|Grk1_chr8_13403280_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Atp4b|Grk1_chr8_13403280_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Csmd2_chr4_128299766_F | TCGTCGGCAGCGTCAGTGCAATTTCTACACCAATTGT | 57.2 | 0.00 |
| mm3_intron_Csmd2_chr4_128299766_R | GTCTCGTGGGCTCGGAATAGTAACAGTGAGGGCCAC | 57.3 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_intron_Dgki_chr6_36850349 |
GGCTCTATCAGGCGTAGAACTGTTAACCATCTCAAGGTGAGATCCCACCATCTGGGGAGTCCGGCAGGTAGGCAGTTATT GGGGCAGC |
| mm4_intergenic_Gm24696|Myc_chr15_61984263 |
TTCTAGGGTCTCTGCAGGCTCCCCAGATCTGGGTTGGCAATTCACTCCTCCCCCTTTCTGGGAAGTCCGGGTTTTCCCCA ACCCCCCAATTCATGGCATATTCTCGCGTCTAGCGCCTTGATTTTCCCCACCCCA |
| mm4_intergenic_Gm26497|Piezo1_chr8_122548801 | ATGGGACTAGGGCATCACCTTGCCTGACTTTCCAGATTAGGGGAGTGGCAAAGAGGCTAAGCACCCCA |
| mm4_intron_Ass1_chr2_31509703 |
GCGTGTTCATGCATGTGTGTGCACAGCCGTCCCCCTCCCCCGACTCCCCAGTGGAAGGGAGGAAGGGCTATTTGGGGCCC TGGGCTCCACCGTAGTTGGTTTAATTACAGGTTTTCAACTGCAGGCC |
| mm4_exon_Nynrin/Gm26751_chr14_55871428 |
TGCAACTGGATCTTCAGCGTTCTCTGGGAGCTCCTGCCCCTCTGGAGAGTCCGGGGCTTCCTGTCATCTGACGGGGCTTC ACTACCTCATC |
| mm4_intergenic_Cldn4|Cldn3/Wbscr25_chr5_134967530 |
AAACCGATTCCACCCTGACCTGGCCGCTCTCACCTCGCACCTTCCCAATGTACCCCCCCACGGGAGAGTCAGGTCACACC CAGAACTATGGACTTTCTGGGTGAGAATACAACACCCTGTCACGCAAGAACAAGGC |
| mm4_intergenic_Gyg|Cpa3_chr3_20191592 |
TCCAATTCTATTCCCTTCTCAGCATCTATTAACTAGCTATAGATCCCCAGAATCTCCAGAAAGGGGAAGCGCTTCCNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNGATGTTCTGTGTTGATCTGCAGCCCAGGAATC |
| mm3_intron_Serpina1f_chr12_103691088 |
CTTCAGGCAGACTCAGGGTGTTCACATGCAATCATGTTCCTGCAGTGTTTGGCCACCCCTCTTACTCAGCCAGACATTCC CCCAAGACCTGACTCTCGAGAGAGTGGGAGTCAGAGCAGCCGAGTACAACTGCTCAC |
| mm3_intergenic_Gm24291|Mon1b_chr8_113551665 |
GCGTTGTTCTGAACCGGAAGAAGTGAAGACAGCTTCCTCCTACCCCCATCTCAGAGCAGAGCAACTTCCTCTTGACTTTC CCTCCCCTCCCCTGGAGAATCAGGGAGTAGCAGGTAACACTCCAAGGGAGGAAGGAGAGG |
| mm4_intron_Arhgef6_chrX_57249372 |
TAGGAAGAGGGGAGCATTCCCATTTTGTCAAAGCATCAAAATAAAGTGGTAAAGGGGGGGTATTTCTCCCTCCCCATGAA GAGTCTGGAGAGACAAGGAACAGATTCCTACCAACTAGAGCCAGAAAAGCAATCAGCCC |
| mm4_intergenic_Gm25778|Ppapdc1a_chr7_129129292 |
CAGAACCAGGCCTCTCAGTGATCATGAGTTTGACACTCTGGTCTCCTAAATCTGAGCGGGTGATACTCCCGACTCTCCAG AGGGTCTCAGAACTAGAGCCTGAAATGGCAAAGGAATCCATGTTTGGTCTCCACTCCCAG |
| mm4_intron_Arhgap42_chr9_9054647 |
TGCTGGACTCCAAAGCTGAGAACCTGCAACCCAGGAGAGGACCCACATTCTCGCAGGCTCTGCTCCTCCCCACTGCAAAG TCTGGTGGGATCCCACATGGAAGCAGATTATGA |
| mm4_intergenic_Cmklr1|1700069L16Rik_chr5_113684516 |
GAGCGTGAGTGTCCTTCAGTAGTCAATGACTCCAACGTCTGAGAAGCCTGCCCTGACTCTCCCGAGGGGAGTTGTGGGAG TGCCTCCATCATTCTTGTTTAGCTCTCCTGGCACTGGA |
| mm4_intron_Grin1_chr2_25308733 |
AGCGTGCGTGTACTGGTAATGGGACAATTGGCACCTGCTTCCTGACTCTCCTGGGGGGAGGTGATGAAGTTGAGGATATT ATTCAACACCACATCTGACCACTATCATCCTCAGAGTGGGGCAGCTAATTCCA |
| mm3_exon_Shbg_chr11_69615559 |
TACCTGGTAAAGCCCCAAGGGAGAGATGGCCCTGAGGGTGGGACCAGAGTCTCCAGAGGGAGGCAGGTCTCAAAAGAGAC ATAGAAAGGACTTCCATCTTTGGTCCTTGGCTCAAGACC |
| mm4_intron_Ulk1_chr5_110796545 |
GCTCAGGAGACTTGGGACACCATGGTCTCTCTCTCTCTCTGGAGAGACAGGAGTGTACATGACTGTGTGGAAAGACAAGT GCAGGGACTAAGCACCAGCACCACTCTACAGAGGGCCTCCAG |
| mm4_intergenic_Gm23980|Gm22810_chr15_24756776 |
GCAAGGTAGCCATGAAGAACCAACTCCCCCCCCCCCCCCCGAGAGTCTGGATGTTGCACAGTCACACTTACTCTCAGCTC CTGCATTCAG |
| mm4_intron_Hoxb3_chr11_96326662 |
TCTGGACAATCAAAGCTGACCACCCCCCCCCCCTACAGAGTCTGGGCCCCGCCGGCGCCCCCTCCCCGTGGGGCAGGGGC AGGCTTCCAGCACTTTCCGCAGGGGTCCTGCTGCCTCGAAACCTCCGAG |
| mm4_intron_Tpd52_chr3_8993109 |
TTGGAGTCTTCTAGCACCGCCCCTCCCCCACTGGAGAGCCAGGGCTCTGGGAGACCCATCCTGAGGCATCGGTCCTCCAG CCCAGCTGAGAGCCGGGGCTCTGGGAGACCCAACCTGAGGCATCCGTTCT |
| mm4_exon_Mirg/Mir377_chr12_109740401 |
GGGGCTCATCGGAGGTAATGCCAGCCTCCCTAGAGGGTGGGAGTCAGGGAGCCAGAGCCGAGGGAGGCAGGGCTGCCTGG GGAAGAGGCGCCCTGCTCAACTCTCGGCCTGTGCTGACGTTTGATT |
| mm4_intron_Tmprss3_chr17_31183394 |
TGTTTGCCTAGCACCTGATGTGTGTGTGGCCAGGCCTTGCTTCCCCACAGCCCTTCCCCTCTCAGGAGAGACGGGGGTTG TAGACGTCTGACTTTCATTGCAGCAAGGCCTCT |
| mm4_intron_Dlgap3_chr4_127172323 |
TTCAGTCTGAAGGCTGCTGGCTCAGCGGGCCTCCTGCCGTCTGGGGAGTCTGGGTTTGAGCTGGGGTGAGGCGGTGGCAC CATCGTTATGGTAACAAGCTGCCAGCTCATCGTTGCTAA |
| mm4_intergenic_Gm10040|Gm17641/1110032F04Rik_chr3_68818434 |
GGTTCAACCCAGGGCTGTAGCCACCGTGCCTCTCCGCTCACCTCACCCGACTCTCCTCAGGGTGGAAGCATGCTTCAGTC CCTCTTTGAATTTTACACCTCTGCCAGTTTTGAAGGTCACAGGTGCCA |
| mm4_intergenic_4933405L10Rik|Gfod2_chr8_105710958 | CTGTAGCAGGTGAGCCAGACTTGGGCCTGACTTTGCAGAGGGCTGGAGAGACGGCTTTGGTTAGGGAT |
| mm4_intron_Papss1_chr3_131614055 |
TACACTGTGATTGCCCCGTGCTGTGTGCCCTCTGTCTTTGACAAAAGGGATGATTTTATGATCCTGGGACAACTCACCCC CTCTGGAAAGCAGGGATGCCACTACACTCCTCTTGGC |
| mm4_intron_Nxnl2_chr13_51172982 |
AGTTGAGATGGTGCTGGTGGCACTAATTAGGCGGAGAACTCTGCCCCTCTGGAGACTAGGGCGCTGGGTTGCTGGCGAGG ATGGTAG |
| mm3_intron_Fbxo21_chr5_118003644 |
TTCCTCATTGCCCAGTGGTCACAGGGCAGCCCTGCACAGTGTGACAGGCTCAGCCACGTAGTTCCGCTATGGCTCCCTCC CTCTGCAGAGCCTGGCATTATAGCACAGCTTCTCTCTTCAATCTCTGCTGCACCAGGAC |
| mm4_intergenic_Ucn3|Gm22460_chr13_3947836 |
CTCTCTTGAAGCCAGACCCCCTCCCCCTCTGTGAAGATTCAGGCATCTTTGTGACTGTTGTTGTCTCTGGAACCTAGGGT TTTGACAATGAGAACAAGCATATCAGTTTCCATTGGCTGACAGGACT |
| mm4_intron_Myh3_chr11_67095861 |
GGCTGCGTAGGGTTTACAGTAGTATTTTACTAGGCTGCTATTTGCTTTTCAGGGATACACCCCTACTCTCAAGAGGAGGG GGGTCTCTCACCTTTATTATTTGCAACCCCATTTGGCCCAATG |
| mm4_intergenic_mmu-mir-6393|Zdhhc25_chr15_87884816 |
CAGGAGAGTCAGAGGAGCCTACATTTTGTTCTCCCTCCCCATGGAGAGCCAGGAGTTAAAATTGACGCTATAATACCCAC ATAGGATCTCTCTTAGTTTTAGCTCCACCAAGTAAACAGCTGAGAAGCCATTATGCCA |
| mm4_intergenic_Lep|Gm25589_chr6_29104937 |
GATTTTCAGCAAGCCCAAAGCTTCTCCAGACTCCGGAGAGGGGGGTAGGGGGAGGGCAGTTCCTTTTCTCTCCCATGTAC ATTTAATTTCCCATTTTCCAGTTGCTCCTAGACAGATGAGTGGGGAGGAGGA |
| mm4_intergenic_n-R5s220|Cacna1e_chr1_154382958 |
TCCCTTGCTTCCCAAATGTTACTTACTCAGTAGCTTCTCCCCTACTCTGGAGAACCTGGACTATCTTCCAGGTAGAGATA TGACCCTTGCACCTTACACT |
| mm4_intron_Parva_chr7_112557589 | CCTAGCTCTCACACCCTCCTCCTCCCTCCCTCCCAACCTCTGCAGAGACCGGAGTCGGTCACCAGCAGTCTAG |
| mm4_intron_Map3k4_chr17_12235355 | TGAGTGCTGAGGGAGTGGTACAGCCATGCCCGACTCTCCTCAGGGGGGCTGCCTGCCTCCTGTCTGGGATGGTACAGC |
| mm4_intron_Stmn2_chr3_8551222 |
GTAGGGTCAGAACTGGGTGCAGTTTACACAGTCGCCCACCCTCTCGAGAGGCTGGATCTCCGCCGTTATGGGGAGGAGCC TCTACTTC |
| mm4_intron_Kcnh1_chr1_192445287 |
TGGCTGTTCTAGGTGCACAGGGTCACAGTATGGTAGGGCCTAAGCAGCATCCGGGCTATCATGGCTGGGTTCTGGCCACT ACTGCCTCCCTCTGTGGAGTCAGGCACTGTCTGTTCCTGTGCGTGCTTACCCCTCATTT |
| mm4_intergenic_Gm16155|Tmcc3_chr10_94426566 |
GGTGAGAGATGCAGGCCAATCAACAGTTTCCGCACAGAGTGGGAGGGGCCGTGGTGGGGCAGCTGCAGGGCAAGGCGGCT TCCTGACTCTAGAGAGGTGGGGACACACAAGAGTTAACCCGCTGAATAGGGACAGA |
| mm4_intergenic_Gm5218|Gm23880_chr15_81523282 |
CTCCGCTGCAAGCCATTCTGCGCACTCGCTCCCTCTGGGGAGGCTGGTCACGTGCCCGGGGTGGGGGTTGGGAGGACGAG CAGCAAGCGCCCCCGGGCTGCACGTGCCGGGCTAGATGAGGGCGGAGCTCC |
| mm4_intergenic_Erv3|Lamr1-ps1_chr2_131892620 |
TGGTGTGCAAAACCCAGACTTCTGTAAACCAGACTCACTAGAGGAGGGCAGACAGCAAAGCGAAGAAACCTCAGACTTAG GAGAGGATGCAGAAACCGGAGAAAGGAGCCA |
| mm4_intergenic_Gm12462|Pax5_chr4_44677301 |
TGCCTGCCACTCCTTTTCATACCCACCGAGGGCTCTGCCCAGGCGCAGGCTGCTTCATCCCTACTCCTCCTCTCTGGAGG ATCAGGCAGGTGACAAGCATTCAGATGATGCCAGGGGATGAGG |
| mm4_exon_Dnah2_chr11_69496625 |
AGATGGTGGCAAAGAGGTGGCTGCCTATGTCATTGACCACACTCGCCAGAGTCTGCAGAGTCGGGGAGAATTCCACCTGC AGGAGAGAGCAGAGGAGCTCAGCACAGCTGGCTGGAGACACAAGCCTCGAG |
| mm4_intergenic_Gm20628/Hist2h3b/Hist2h2bb|Hist2h2bb_chr3_96276238 |
CCTGCTCATTCGTCGGGAATAACAATAAGATAGACCACTGTGTGCCAGACTCTCCACAGGTGAGCAGGGGATGGTATGTG CTGAGTCTGAACTGAAGAAAGGCCAGTGTGGTGAATACC |
| mm4_intergenic_Zcchc6|Gas1_chr13_60014358 |
GTGGGCTTTGCGAAAACTCCATGCCCAGGCTCTCCAGGGGGCGAGAGACTTGGACACTGCTTTCTCCCTAGAAGGCTTCA GAGTCAGACTGATGGCTCCAACCC |
| mm4_intron_Gm16168_chr17_10564418 |
AGCAAACCTAGTGACCAGCATTCCAAAACACCATCTCTGGAAGCCAGTGCTCCTCATCTCTGGAGTGTCTGGGCTCAATG TCCTGTTAGTGTCTGTTCATGTTTTAGGTGTTAACTTCGGCCTGTTCTGACATCTG |
| mm4_intron_Lep_chr6_29070426 |
AAGAGTCATCAGGGCTGCACATGGAGAGGCCCAACTACCCAAATGTGGGTGGAAATGAGAGGAAGCCAGTGGGAAAAGCC CTTCCTGGTAACCAGACTCAGCAGAGTGGGGGGGGGGGGCACGGCTTTGACCCTAATG |
| mm4_intergenic_5S_rRNA|Rasa2_chr9_96526758 |
CTCCCTGGGTTCCTTAGGGAATCAGCTGTCGTGGTATAGTCACATCCACACAGCATGAACCACCCAAACTCTCCAGCCGG GGGCAGGGTGTGTGAAAGAGGAGCAGATCTTGGGAGGT |
| mm4_intron_Ext2_chr2_93797405 |
GGATCGCTCTTCCTGTCCAGACAAAGGTTACTATAAACACCGACTGCATCTCCACCACTACCAGCCAGAAACTCCAGAGG GAGGCAGTACTTCCTGAGAGAGTATTTTAACAACTTCAGGGTGGGCC |
| mm4_intron_Magi1_chr6_93929116 | ACGCTAGCTGACCCAGTTTCTGTGTTTGCTCCCCGACTCGCCACAGTGTGGGAGCCACAGACTTGGAAGTATCCCA |
| mm4_intergenic_Fars2|Gm26395_chr13_36555097 |
TGTGGCTTCTGTCCAGTGTCCTTAGCTCCTCCCACCCTCTGGAGACCTGGGTATATATGGAAGGGTGGAAAAGAGATGAA TTTGCCTCTGTTGCAGCAGCTGCAGATTGGTCCCTACA |
| mm4_intergenic_Bmper|Npsr1_chr9_23697125 |
TACAAACTCCCCTGCACCACGTGTGGGAAGTCTCCACTCCTGTGGAGAGACTGGTGTTCTTCATTGTTCTAATTAAAGGA CAATCTGATGCTGGAGGTGCC |
| mm4_exon_Amz1_chr5_140752245 |
CGCCATGGAGGAGTATGGACAGTGGCTGACTGCGTGCATCCAGACCCTGGAGAGGGAGGGAGCTGAAGAGGAGCTGCTCC AGGTGGATGCGGCTGTGGATGCCCTGAGCCGGTGGGAGATGTTCACAGGG |
| mm4_intergenic_Rbm33|Shh/9530036O11Rik_chr5_28456604 |
AGAGTTGGAAATGGGCAGGGGAAGATTGTCCCCCTCAATTCCCCAACTCTGGAGAGTGTGGGCGGAGCTTTGCATAGCAA GTACAGGGCTGGGGTCTTCCAATGAGGAGGGC |
| mm3_intergenic_5430435G22Rik|Slc26a9_chr1_131742805 |
GGGCTCCAAGACAGTGTTCACTGACACGTTCTCCCCCCCACTGGAGTGGCAGGCATACTTGGGTCCCTGGCATCCTGGCT ACACCTCGAC |
| mm4_intron_Zfyve27_chr19_42174795 |
GTCTGAGGCTATGCGGAGAGCAGTGTGTCGCTGGATGGAGGGGGAGCTCCCCCCAGCTGGAGTCTCTGGATGCTGGCAGA GGGATCACTGGTCTG |
| mm4_intergenic_Gfra2|Gm9192_chr14_71740223 |
GGTTCGCACAAGACATGTCACATGCTGTTGTGACTTCCCTCCTCTGAAGAGTGAGGGTGATGAATTCGGGAGTGGTGAAT AACTTGATAAGTACCTAGAGGCTTGTACCCAGCATGGTGTGCCCACTCCAGATGCTTTT |
| mm4_exon_Rtn2_chr7_19287094 |
CTGGAGGAACTGAGGCTGCGGCTGGACCAGCTTGGCTGGGTTGTCCGGAGTGCGGGATCTGGGGAGGATTCGGCCACCAG CAGCTCCACCCCTCTGGAAAATGAGGAGCCTGATGGATTGGAGGCCAG |
| mm4_intergenic_Ppargc1b|Gm25301_chr18_61397595 |
CTAAGCCTGGGTTAGCCACCAAAGACAAGAAGAACTCTTTGGGGGAACAGAGACAATCCACTTTCCCCAACCCTCCCGAG GGGGAGAGCTGGGGGGAGGGGAGGGTCTGGGAAGGGCTGTGGGGAAGAAGCTGGAC |
| mm4_intergenic_Prdx6|Tnfsf4_chr1_161288470 |
TCTCTGGCTGTGCTCTCTCTTTGCCCCAGTCGCTGCCTTGTAATCCTGACCCGCCAGAGGGGGCGGGGCCTCGCGGAGGC ACGCCCCCCACGTCACAGGCTCACTCCCAAT |
| mm4_intron_Celsr1_chr15_85942654 |
AAACGCAGGGTAGTGTCACTAGATTTTACAACTGGCACACTAGATAGAAGACTCTTCCTCCTCCCTGGAGAGTCTGACTA CAGTTCTCCTCAACACCCC |
| mm4_intergenic_Gm17118|Cacna2d2_chr9_107460850 |
CCAGCTAAGTCTGCCAGTCCTCTGCCCCCTCCCCTCTGGAGTGGCTGGCTTCCCCCTGCCCCAGCTCTTCAGTATCATCA CCATCTTGTCTGCCCCAAGCTC |
| mm4_intron_Sfxn5_chr6_85220072 |
GAGGGAGCTGGATGTGTACGCACAGCCAGCGCCTCCAGAGTGGGGGAGCTTGCCCGGAAGAGCAGATGGAGGGGAACAGG CACATTCGAGGGGCGGGGAAGGGAATGAGCCCACGAAG |
| mm3_intron_Ano10_chr9_122265208 |
TGGCTACCACTTTCACACCCTGATGGGATCTCAGTTAGCTGGAGGAAAAGAGAACTCCTCACCCATGAGTCCTCTTACAA TCCATCACTCAGACTCTCCACAGAGGAGGAGGGAAGTAAAGGGCAAGCTACTGTGAAGG |
| mm4_intergenic_Rassf5|Ikbke_chr1_131251285 |
CTCTCTGGCCACTCTCGTTCCTCTCCATCTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TGGTGAGGGAGGTATGGAAAAACCAAGGCTCTAAAAGGCAGT |
| mm4_exon_Nhlrc4/Pigq_chr17_25944526 |
CACAGGTGTCTGGGTGTCTGCAGCAGGGGTCTGAGAGACACCACACACTCAAGAGGGGCGGAGGTTTACCTCTAAGGCTC AAATCGCATGCAGAG |
| mm4_intron_Ssbp4_chr8_70604885 |
GCATCAGCATGTGCCATCAGTGCAGGATGGTGGCGGGGCCAGGGTGGCATCCCAGCCCTGCCCCCCTCCTGACAGTCAGG GGCTGGGGTCCTCCTGGCATTTTCA |
| mm4_intron_Mrc2_chr11_105331462 |
TATGGGCCCTGCAATGTTCCTGGCTGCTCTCCCCACCTCTGGTCAGACTGGGCCTCACTATCAGCCAAGACTCCTTTCCC TTGTTTCTTTTATCCAAGACTGCAGAGGTCAACACAGAGGG |
| mm4_intron_Mgll_chr6_88769972 |
GCAGCTGCTCCTATGACTCACTGGAAACCCCTTGGCCCTCCACACAGGCATCCTGGCCAGCCAGACTGTACAGAGTGGGT GAGAAGGGCCTATGGAGAGCGGACAGGAATCTACTGCCC |
| mm4_intron_L3mbtl3_chr10_26305159 |
AGCAAGATGAAAGACACCCAAAATACACTCACTATACAAATGACAAAGCCCTTTCTTTCTTACTAAGCCCAGTCTATCCA GAAGGGGTGAGAACTGCATCAGAAAGACAGCAAAGAGATGCAATGGCTGGTCATCGA |
| mm4_intergenic_Tha1|Gm11725_chr11_117879894 |
GCTGGATGAGTCTTGCGTCATCAGACTTACTCCGGCCCTCTGGGCAGTCAGGCACGTGGGATGTGGGATGTGTGGCCTTG GGATGTGTAGCACCTTGCTTTGTGTCTGG |
| mm4_intergenic_Oaf|D630033O11Rik_chr9_43255585 |
TAGGAGGGGAGCAGAAGACCACCTGCTCCCCCCCTCAGGCCAGGCAGGCCTACAGATGAGACTCAGAGGGACCACCCAGG GTGTGAGGCCTGCCTGCCACCAGTCCTGAGACCCAAGGGCCTGCAGGAGCTTCTGTGAA |
| mm3_intron_Csmd2_chr4_128299766 |
AGTGCAATTTCTACACCAATTGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNCTCCTCCCCTCTGGATAGTTTGGGTGGCCCTCACTGTTACTATT |