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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313838_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313838_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm3_intron_Erbb2_chr11_98415644_F | TCGTCGGCAGCGTCCCTTTCTCTTGGGCCCTCTG | 60.0 | 0.60 |
| mm3_intron_Erbb2_chr11_98415644_R | GTCTCGTGGGCTCGGCCTGCCCACATCATTCCCAT | 60.1 | 0.60 |
| mm3_intron_Llgl2_chr11_115854045_F | TCGTCGGCAGCGTCGCCTGTGGCCTCTGTGAG | 60.0 | 0.59 |
| mm3_intron_Llgl2_chr11_115854045_R | GTCTCGTGGGCTCGGCCGACAGAGCTCCACATCTG | 60.1 | 0.59 |
| mm4_intron_Gm20681_chr8_122374323_F | TCGTCGGCAGCGTCGCAAGAGTGAGAAGAGGGGAC | 60.0 | 0.42 |
| mm4_intron_Gm20681_chr8_122374323_R | GTCTCGTGGGCTCGGAGAGGCTGGGGAGATGAACT | 59.9 | 0.42 |
| mm4_intron_Slamf8_chr1_172589020_F | TCGTCGGCAGCGTCCCAATGCAAGATAAAGGTGGAAACT | 60.0 | 0.40 |
| mm4_intron_Slamf8_chr1_172589020_R | GTCTCGTGGGCTCGGTCCCGCTTCACTCTCAAACC | 59.9 | 0.40 |
| mm4_intergenic_Gm25660|Slc27a6_chr18_58498801_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm25660|Slc27a6_chr18_58498801_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm22184|Asprv1_chr6_86606636_F | TCGTCGGCAGCGTCAAGGTTGTCAGGGCCCAAAT | 59.8 | 0.39 |
| mm4_intergenic_Gm22184|Asprv1_chr6_86606636_R | GTCTCGTGGGCTCGGGCCATCAGACTCCTGGTTCC | 60.1 | 0.39 |
| mm3_intron_Ece1_chr4_137922950_F | TCGTCGGCAGCGTCTCAGAGCATCCTGTTGCCAG | 60.0 | 0.38 |
| mm3_intron_Ece1_chr4_137922950_R | GTCTCGTGGGCTCGGGGGCACTCTTTGAGTCCTGG | 60.3 | 0.38 |
| mm4_intergenic_Gm15668|Kif22-ps_chr1_67389534_F | TCGTCGGCAGCGTCGGTTTTCAGCATGCACTTCCA | 59.6 | 0.37 |
| mm4_intergenic_Gm15668|Kif22-ps_chr1_67389534_R | GTCTCGTGGGCTCGGGCCTGGACATATAAAAGACATTCCC | 59.7 | 0.37 |
| mm4_intergenic_Gm6462|Gm25586_chr1_28959563_F | TCGTCGGCAGCGTCCCCTACCATGGGCAGAACC | 59.7 | 0.37 |
| mm4_intergenic_Gm6462|Gm25586_chr1_28959563_R | GTCTCGTGGGCTCGGACCTCTTACTGAAATGACTCTCAA | 57.3 | 0.37 |
| mm4_intron_A530013C23Rik_chr2_167709856_F | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intron_A530013C23Rik_chr2_167709856_R | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intergenic_Pde2a|Art2a-ps_chr7_101543249_F | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intergenic_Pde2a|Art2a-ps_chr7_101543249_R | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intron_Pxdc1_chr13_34644702_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intron_Pxdc1_chr13_34644702_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intron_Kcnq1_chr7_143148909_F | TCGTCGGCAGCGTCGGCCACCTTGGATGATGACA | 60.0 | 0.35 |
| mm4_intron_Kcnq1_chr7_143148909_R | GTCTCGTGGGCTCGGGCTCTGATTCCAAGGGCACT | 60.0 | 0.35 |
| mm4_intergenic_Gm649|Gm14805_chrX_89337902_F | TCGTCGGCAGCGTCGGGGATAAATCACCCTCCATGG | 60.2 | 0.34 |
| mm4_intergenic_Gm649|Gm14805_chrX_89337902_R | GTCTCGTGGGCTCGGAGGTCTCACAAATCTGTCCCA | 58.6 | 0.34 |
| mm4_intron_Tnni1_chr1_135803713_F | TCGTCGGCAGCGTCCCTCAGAGAACTCAGCCTGC | 60.1 | 0.34 |
| mm4_intron_Tnni1_chr1_135803713_R | GTCTCGTGGGCTCGGTCCGACTATCCAGGCCAAGA | 60.0 | 0.34 |
| mm3_intergenic_Gulp1|Col3a1_chr1_45225820_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm3_intergenic_Gulp1|Col3a1_chr1_45225820_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intron_Vmn2r19_chr6_123313854_F | TCGTCGGCAGCGTCGGAGCAGCTGTCTTCCTGAG | 60.1 | 0.32 |
| mm4_intron_Vmn2r19_chr6_123313854_R | GTCTCGTGGGCTCGGGCCAGAGGCTGTGATAGAAAGA | 59.8 | 0.32 |
| mm4_intergenic_Gm11468|Gm14268_chr2_166333558_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Gm11468|Gm14268_chr2_166333558_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm3_intron_Col24a1_chr3_145448799_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm3_intron_Col24a1_chr3_145448799_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm3_intron_Cad_chr5_31062089_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intron_Cad_chr5_31062089_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Atl3|Pla2g16_chr19_7549687_F | TCGTCGGCAGCGTCGCCCAGAAAGACTTGTTGGC | 59.6 | 0.27 |
| mm4_intergenic_Atl3|Pla2g16_chr19_7549687_R | GTCTCGTGGGCTCGGCCCTCCCCTGCTAAACTGTG | 60.0 | 0.27 |
| mm3_intergenic_Rhot1|Rhbdl3_chr11_80295030_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm3_intergenic_Rhot1|Rhbdl3_chr11_80295030_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gpr89|Gja8_chr3_96911748_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gpr89|Gja8_chr3_96911748_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Pcdh8|Gm6999_chr14_79828059_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Pcdh8|Gm6999_chr14_79828059_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm25754|Gm24555_chr1_83826538_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm25754|Gm24555_chr1_83826538_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Frk|Gm26341_chr10_35050311_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Frk|Gm26341_chr10_35050311_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Ackr3|5S_rRNA_chr1_90234333_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Ackr3|5S_rRNA_chr1_90234333_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Ppfibp1_chr6_147017854_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Ppfibp1_chr6_147017854_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_5033426O07Rik|Gm26815_chr8_121249014_F | TCGTCGGCAGCGTCCCCTCATGTCACACTTCCCC | 60.0 | 0.25 |
| mm4_intergenic_5033426O07Rik|Gm26815_chr8_121249014_R | GTCTCGTGGGCTCGGGGACCCATGATGCAATGGGA | 60.1 | 0.25 |
| mm4_intergenic_Ccdc154|BC003965_chr17_25173861_F | TCGTCGGCAGCGTCGCAAGTTAGGGCTGGCAGTA | 60.0 | 0.25 |
| mm4_intergenic_Ccdc154|BC003965_chr17_25173861_R | GTCTCGTGGGCTCGGCCCTCTAAGCCAGGTCCTCT | 60.0 | 0.25 |
| mm3_intergenic_Gm26963|Ypel5_chr17_72737228_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_Gm26963|Ypel5_chr17_72737228_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Vimp|Chsy1/Gm26827_chr7_66092633_F | TCGTCGGCAGCGTCTTCCTTGGCATCGTCTTCCC | 60.0 | 0.24 |
| mm4_intergenic_Vimp|Chsy1/Gm26827_chr7_66092633_R | GTCTCGTGGGCTCGGGCACATCTTCCAAATCAGGCC | 59.8 | 0.24 |
| mm4_intron_Tns1_chr1_73926758_F | TCGTCGGCAGCGTCAGCCCGGTACAGAGACAGAA | 60.2 | 0.24 |
| mm4_intron_Tns1_chr1_73926758_R | GTCTCGTGGGCTCGGCTACACGTTCAGTCCGCCTT | 60.0 | 0.24 |
| mm4_intergenic_Sorbs1|Aldh18a1_chr19_40521365_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Sorbs1|Aldh18a1_chr19_40521365_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm13508|Gm25215_chr2_49348546_F | TCGTCGGCAGCGTCCCTGCGGAAGAAGATGGTGA | 59.7 | 0.23 |
| mm4_intergenic_Gm13508|Gm25215_chr2_49348546_R | GTCTCGTGGGCTCGGGAATGCCCAGGCCCTATAGC | 60.3 | 0.23 |
| mm4_intron_Cdkn1a_chr17_29095488_F | TCGTCGGCAGCGTCATCGTGACGTGTTTTGTGGC | 59.6 | 0.23 |
| mm4_intron_Cdkn1a_chr17_29095488_R | GTCTCGTGGGCTCGGTGGTGAGTCAGTTTCCTGCC | 59.8 | 0.23 |
| mm4_intergenic_Gm12708|Gm830_chr4_95418181_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm12708|Gm830_chr4_95418181_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Meis2_chr2_115882411_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Meis2_chr2_115882411_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Cntnap2_chr6_47156479_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Cntnap2_chr6_47156479_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Cntnap2_chr6_47137544_F | TCGTCGGCAGCGTCAGAACTTTGGGTGAGATGACTC | 57.7 | 0.22 |
| mm4_intron_Cntnap2_chr6_47137544_R | GTCTCGTGGGCTCGGCAGCATCAGAAGGAAGGGCA | 60.0 | 0.22 |
| mm4_intron_Cntnap2_chr6_47119116_F | TCGTCGGCAGCGTCAGAGCTTTGGGTGAGATGACTC | 59.7 | 0.22 |
| mm4_intron_Cntnap2_chr6_47119116_R | GTCTCGTGGGCTCGGTTTGGGCCAGCATCAGAAGG | 60.6 | 0.22 |
| mm4_intron_Rreb1_chr13_37833082_F | TCGTCGGCAGCGTCAAGACAGGATGGGGAGGGAA | 59.8 | 0.22 |
| mm4_intron_Rreb1_chr13_37833082_R | GTCTCGTGGGCTCGGGCTGGGGTCCCATACAAACA | 59.9 | 0.22 |
| mm4_intron_Mettl15_chr2_109205877_F | TCGTCGGCAGCGTCACAAGCATTTCTTCTCTGTTCCT | 58.2 | 0.22 |
| mm4_intron_Mettl15_chr2_109205877_R | GTCTCGTGGGCTCGGTGCTAGATATGTCTGGGACTGA | 57.8 | 0.22 |
| mm4_intron_Alk_chr17_72341459_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Alk_chr17_72341459_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm5316|Clec4a1_chr6_122901768_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm5316|Clec4a1_chr6_122901768_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Dusp10_chr1_184034806_F | TCGTCGGCAGCGTCAGTCTTTTGGCTCTGCTTGC | 59.0 | 0.21 |
| mm4_intron_Dusp10_chr1_184034806_R | GTCTCGTGGGCTCGGTATTCCGTGCCACCACTGAG | 59.7 | 0.21 |
| mm4_intron_Pld5_chr1_175987635_F | TCGTCGGCAGCGTCTCATTTCCTCCTCCCTCCTT | 57.3 | 0.19 |
| mm4_intron_Pld5_chr1_175987635_R | GTCTCGTGGGCTCGGTGGACATGACTGAAATGGTGA | 57.2 | 0.19 |
| mm3_intergenic_Gm16087|Gm16086_chr12_107027851_F | TCGTCGGCAGCGTCAGACAGAGGGACAGACGCTA | 59.6 | 0.19 |
| mm3_intergenic_Gm16087|Gm16086_chr12_107027851_R | GTCTCGTGGGCTCGGCTCTCTGAAGTTACCCCGCC | 59.8 | 0.19 |
| mm4_intergenic_4933402E13Rik|Gm14679_chrX_62338517_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_4933402E13Rik|Gm14679_chrX_62338517_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Pds5a|1700022K14Rik_chr5_65717919_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Pds5a|1700022K14Rik_chr5_65717919_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Tmem189|Gm22355_chr2_167644223_F | TCGTCGGCAGCGTCGCCTGCAGCAGACACAGTTA | 60.6 | 0.18 |
| mm4_intergenic_Tmem189|Gm22355_chr2_167644223_R | GTCTCGTGGGCTCGGAAGCCGCACTTGAAAGAGGT | 60.1 | 0.18 |
| mm4_exon_Tulp2_chr7_45520993_F | TCGTCGGCAGCGTCGAAAGCACAGGGTCAGACCA | 59.8 | 0.18 |
| mm4_exon_Tulp2_chr7_45520993_R | GTCTCGTGGGCTCGGTGTGGCTGGACTTTCATCCTC | 59.9 | 0.18 |
| mm4_intron_Arpc2_chr1_74267681_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Arpc2_chr1_74267681_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_5430427O19Rik|Gm14763_chrX_85892500_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_5430427O19Rik|Gm14763_chrX_85892500_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Col4a3bp_chr13_96556294_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Col4a3bp_chr13_96556294_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Asphd2|Sez6l_chr5_112392254_F | TCGTCGGCAGCGTCTCAGTCACCGTGAAAGGGTT | 59.1 | 0.16 |
| mm4_intergenic_Asphd2|Sez6l_chr5_112392254_R | GTCTCGTGGGCTCGGGCTGGATCTCCATCTTCCCG | 59.9 | 0.16 |
| mm4_intron_St8sia3_chr18_64257136_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_St8sia3_chr18_64257136_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Mad1l1_chr5_140044611_F | TCGTCGGCAGCGTCCCACATGGGGCTCTCAGAAT | 59.4 | 0.16 |
| mm4_intron_Mad1l1_chr5_140044611_R | GTCTCGTGGGCTCGGTACTGACCTCTGCGACTCCA | 59.9 | 0.16 |
| mm4_intron_Elfn1_chr5_139913296_F | TCGTCGGCAGCGTCTCCCCATAAACTTGGAGCGG | 59.7 | 0.15 |
| mm4_intron_Elfn1_chr5_139913296_R | GTCTCGTGGGCTCGGTAAACACAGCCTGGGACACC | 59.8 | 0.15 |
| mm4_intron_Lag3_chr6_124904993_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Lag3_chr6_124904993_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gna12|Card11_chr5_140871016_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gna12|Card11_chr5_140871016_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Gm25226|Plxnb3_chrX_73756759_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Gm25226|Plxnb3_chrX_73756759_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm15074|Gm4996_chrX_146791936_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm15074|Gm4996_chrX_146791936_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Golm1_chr13_59674221_F | TCGTCGGCAGCGTCTGAAAAGACCAAAGCCCTGC | 58.9 | 0.14 |
| mm4_intron_Golm1_chr13_59674221_R | GTCTCGTGGGCTCGGAGTTGGAGGACAGAGGGAGG | 60.2 | 0.14 |
| mm4_intron_Tenm4_chr7_96468903_F | TCGTCGGCAGCGTCAAGGTGTTGGCCTTGGCAA | 60.3 | 0.14 |
| mm4_intron_Tenm4_chr7_96468903_R | GTCTCGTGGGCTCGGCCTCTCCCCACCCCTAAGTT | 60.2 | 0.14 |
| mm4_intergenic_Gm13855|Gm14546_chr6_34253093_F | TCGTCGGCAGCGTCCAAGCCCTCAACGACAGCTA | 60.0 | 0.14 |
| mm4_intergenic_Gm13855|Gm14546_chr6_34253093_R | GTCTCGTGGGCTCGGCACATTGAGTGTTGGTATGGCT | 58.9 | 0.14 |
| mm4_intergenic_Gm22777|Spock1_chr13_57139054_F | TCGTCGGCAGCGTCGCCGTGAGTCACATCCAAGA | 60.0 | 0.14 |
| mm4_intergenic_Gm22777|Spock1_chr13_57139054_R | GTCTCGTGGGCTCGGGGATGAACTGGGAGGCTGTG | 60.3 | 0.14 |
| mm4_intergenic_Gm6434|Cyp2b10_chr7_25895903_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm6434|Cyp2b10_chr7_25895903_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Ksr2_chr5_117576372_F | TCGTCGGCAGCGTCGCTGTTTCTCAACTGGCCTT | 58.6 | 0.13 |
| mm4_intron_Ksr2_chr5_117576372_R | GTCTCGTGGGCTCGGAAGGTAGAAGCCTTCCTGGG | 58.7 | 0.13 |
| mm4_intron_Epha10_chr4_124914650_F | TCGTCGGCAGCGTCATCCCGCCTAGAGTCCCTG | 60.1 | 0.13 |
| mm4_intron_Epha10_chr4_124914650_R | GTCTCGTGGGCTCGGCATCCTCCACGGCCTTGATT | 60.1 | 0.13 |
| mm3_intron_Rgs9_chr11_109246171_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intron_Rgs9_chr11_109246171_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Spsb4_chr9_96987464_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Spsb4_chr9_96987464_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_H2-T3|Gm4246_chr17_36192055_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_H2-T3|Gm4246_chr17_36192055_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intergenic_Rell1|Gm25608_chr5_63969227_F | TCGTCGGCAGCGTCTGGGTCCTGGGACTAGTCAG | 59.9 | 0.12 |
| mm3_intergenic_Rell1|Gm25608_chr5_63969227_R | GTCTCGTGGGCTCGGCGCCATTCTGAAACTGCTGG | 59.8 | 0.12 |
| mm4_intergenic_Gm22848|Rp1_chr1_4072125_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm22848|Rp1_chr1_4072125_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Fam53b_chr7_132786607_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Fam53b_chr7_132786607_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Ppfia2_chr10_106738410_F | TCGTCGGCAGCGTCGGATCCTGACAGCTGCCATT | 60.1 | 0.11 |
| mm4_intron_Ppfia2_chr10_106738410_R | GTCTCGTGGGCTCGGTGGGTCTGTGACACTCGATG | 59.3 | 0.11 |
| mm4_intergenic_Gm25491|Eya1_chr1_14163370_F | TCGTCGGCAGCGTCGACTAAGATGCCTGCCCCTC | 59.8 | 0.10 |
| mm4_intergenic_Gm25491|Eya1_chr1_14163370_R | GTCTCGTGGGCTCGGAGAGCTTGTCCAAGGGAAGC | 59.9 | 0.10 |
| mm4_intergenic_Fgf9|Gm17109_chr14_58087790_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Fgf9|Gm17109_chr14_58087790_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Cacna1h_chr17_25427166_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Cacna1h_chr17_25427166_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm22845|Nt5c1b_chr12_10070541_F | TCGTCGGCAGCGTCACACTTGGAAATGGCCTCCA | 59.5 | 0.09 |
| mm4_intergenic_Gm22845|Nt5c1b_chr12_10070541_R | GTCTCGTGGGCTCGGTGTGCTATGACTGTGGAGGG | 59.0 | 0.09 |
| mm4_intergenic_9030612E09Rik|Pdss2_chr10_43214980_F | TCGTCGGCAGCGTCGGGATACACACAGTATTACATAGCA | 58.2 | 0.09 |
| mm4_intergenic_9030612E09Rik|Pdss2_chr10_43214980_R | GTCTCGTGGGCTCGGGCCCACAAGATCATTCTCAATTCT | 59.3 | 0.09 |
| mm3_intergenic_Acox3|Htra3_chr5_35622138_F | TCGTCGGCAGCGTCGGGCCTCAGTGAACCATACA | 59.3 | 0.08 |
| mm3_intergenic_Acox3|Htra3_chr5_35622138_R | GTCTCGTGGGCTCGGTGTGCTCAGGCTTTGGTGTA | 59.5 | 0.08 |
| mm4_intergenic_mmu-mir-6378|Gm25442_chr3_35066689_F | TCGTCGGCAGCGTCGGAAAGGAAAGAGGCCGCTT | 60.6 | 0.08 |
| mm4_intergenic_mmu-mir-6378|Gm25442_chr3_35066689_R | GTCTCGTGGGCTCGGTGGGTGGGTTGTCCTGTAAA | 58.7 | 0.08 |
| mm3_intron_Dscam_chr16_96736513_F | TCGTCGGCAGCGTCGGCTGCAAGAAAAGCATCCC | 60.1 | 0.08 |
| mm3_intron_Dscam_chr16_96736513_R | GTCTCGTGGGCTCGGGTGGGTCAGCACTTTCATGC | 59.7 | 0.08 |
| mm4_intergenic_3110083C13Rik|Fgf9_chr14_58061738_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_3110083C13Rik|Fgf9_chr14_58061738_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Iqca_chr1_90109688_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Iqca_chr1_90109688_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Rnf144b|4931429P17Rik_chr13_47636421_F | TCGTCGGCAGCGTCAGGACTCAAGAGAAACCCCA | 57.8 | 0.07 |
| mm4_intergenic_Rnf144b|4931429P17Rik_chr13_47636421_R | GTCTCGTGGGCTCGGCTCATTAGGTCCAGGTCCCC | 58.8 | 0.07 |
| mm4_intergenic_1700109G15Rik|Gm11431_chr11_84760809_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_1700109G15Rik|Gm11431_chr11_84760809_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Zfpm2_chr15_41056745_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Zfpm2_chr15_41056745_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rora|F830001A07Rik_chr9_68775566_F | TCGTCGGCAGCGTCGTAGAAACGCTGGGCTCTCC | 60.4 | 0.06 |
| mm4_intergenic_Rora|F830001A07Rik_chr9_68775566_R | GTCTCGTGGGCTCGGGGGGTTTGGGAACTGGATGT | 59.8 | 0.06 |
| mm4_intron_Rab27b_chr18_70094936_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Rab27b_chr18_70094936_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Usp25_chr16_77054625_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Usp25_chr16_77054625_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Gse1_chr8_120304608_F | TCGTCGGCAGCGTCAGTGACCAAACCCTCTGCAG | 59.8 | 0.06 |
| mm4_intron_Gse1_chr8_120304608_R | GTCTCGTGGGCTCGGCGGCCCATTCACAAAACAGG | 60.0 | 0.06 |
| mm4_intron_Igf2bp2_chr16_22136732_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Igf2bp2_chr16_22136732_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_St6galnac3_chr3_153463705_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_St6galnac3_chr3_153463705_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Vamp8|Ggcx_chr6_72409838_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Vamp8|Ggcx_chr6_72409838_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rxfp3|Adamts12_chr15_11063185_F | TCGTCGGCAGCGTCGCAAAACACAGGAGCCAGTG | 59.9 | 0.05 |
| mm4_intergenic_Rxfp3|Adamts12_chr15_11063185_R | GTCTCGTGGGCTCGGCAGGGACCCAAAATGCAAGG | 59.3 | 0.05 |
| mm4_intron_Hagh_chr17_24857839_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Hagh_chr17_24857839_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Apba1_chr19_23923067_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Apba1_chr19_23923067_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Slc6a1_chr6_114305034_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Slc6a1_chr6_114305034_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Rimbp2_chr5_128832917_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Rimbp2_chr5_128832917_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Sox5_chr6_143936789_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Sox5_chr6_143936789_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_5031439G07Rik|Upk3a_chr15_85000157_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_5031439G07Rik|Upk3a_chr15_85000157_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm23591|Speer2_chr16_69482569_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm23591|Speer2_chr16_69482569_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Olfr972|Olfr229_chr9_39904218_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Olfr972|Olfr229_chr9_39904218_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_R3hdm1_chr1_128131647_F | TCGTCGGCAGCGTCACCTGGAACTTGGGGAGACT | 60.1 | 0.04 |
| mm4_intron_R3hdm1_chr1_128131647_R | GTCTCGTGGGCTCGGTCACTGTTCCAACTCACTGTCT | 59.2 | 0.04 |
| mm4_intergenic_Gprc5b|Gpr139_chr7_119023582_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gprc5b|Gpr139_chr7_119023582_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25736|Tmeff2_chr1_51029470_F | TCGTCGGCAGCGTCAGAGCTGGATATATGGCTCCA | 57.8 | 0.03 |
| mm4_intergenic_Gm25736|Tmeff2_chr1_51029470_R | GTCTCGTGGGCTCGGAGTGAGTTTTCCTCCCTGCC | 59.5 | 0.03 |
| mm4_intron_Frmd4a_chr2_4414130_F | TCGTCGGCAGCGTCTGTTCTCACTGGTGCCATGG | 60.2 | 0.03 |
| mm4_intron_Frmd4a_chr2_4414130_R | GTCTCGTGGGCTCGGGGCTGCCATGATAGACTGCA | 60.1 | 0.03 |
| mm4_intergenic_Gm26430|Gm23895_chr18_78622505_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm26430|Gm23895_chr18_78622505_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Chrm1/Gm22820|Slc3a2_chr19_8695728_F | TCGTCGGCAGCGTCTGTCCTTGCTCTGCTTCCTG | 59.9 | 0.03 |
| mm3_intergenic_Chrm1/Gm22820|Slc3a2_chr19_8695728_R | GTCTCGTGGGCTCGGTTCCACATAGGGACTTGGGC | 59.3 | 0.03 |
| mm4_intergenic_Tec|Gm9870/Slain2_chr5_72899246_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Tec|Gm9870/Slain2_chr5_72899246_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Slc25a30_chr14_75772694_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Slc25a30_chr14_75772694_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_9230111E07Rik|1200007C13Rik_chr2_167790512_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_9230111E07Rik|1200007C13Rik_chr2_167790512_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm25799|Slit3_chr11_34971500_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm25799|Slit3_chr11_34971500_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Ncapd2_chr6_125189713_F | TCGTCGGCAGCGTCGGCAGGGACTAGGAAAGACC | 59.4 | 0.02 |
| mm4_intron_Ncapd2_chr6_125189713_R | GTCTCGTGGGCTCGGCGTCAAGCACCTCTCATCCC | 60.4 | 0.02 |
| mm4_exon_Tmem116_chr5_121495258_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Tmem116_chr5_121495258_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Lrig3_chr10_126004204_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Lrig3_chr10_126004204_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_4933439C10Rik|Zkscan17_chr11_59521539_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_4933439C10Rik|Zkscan17_chr11_59521539_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm5611|Chordc1_chr9_18232752_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm5611|Chordc1_chr9_18232752_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Atm_chr9_53476837_F | TCGTCGGCAGCGTCTCCATCCGAGGTGGCTAGTA | 59.4 | 0.01 |
| mm4_intron_Atm_chr9_53476837_R | GTCTCGTGGGCTCGGTGAATGCACATCCTGCCAGT | 59.9 | 0.01 |
| mm4_intergenic_Gm5908|Gm3985_chr8_32876295_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm5908|Gm3985_chr8_32876295_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ccl1_chr11_82254769_F | TCGTCGGCAGCGTCACCTGACTGAGATTGGCAGC | 60.0 | 0.01 |
| mm3_intron_Ccl1_chr11_82254769_R | GTCTCGTGGGCTCGGGTTCCACAGGCCACACTTCT | 60.1 | 0.01 |
| mm4_intergenic_Chrm2|Gm25111_chr6_36603850_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Chrm2|Gm25111_chr6_36603850_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Rims4|Ywhab_chr2_163953362_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Rims4|Ywhab_chr2_163953362_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Eif4g2|Galnt18_chr7_111368991_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Eif4g2|Galnt18_chr7_111368991_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Pou3f1|Utp11l_chr4_124664679_F | TCGTCGGCAGCGTCCCCACATGGAAAGAGGGCTT | 59.9 | 0.01 |
| mm4_intergenic_Pou3f1|Utp11l_chr4_124664679_R | GTCTCGTGGGCTCGGATCGGGTGTGAGAGAGCAAC | 59.7 | 0.01 |
| mm3_intergenic_Arhgef39|Gm12454_chr4_43503634_F | TCGTCGGCAGCGTCCCCTCAAGCGCCAGTTAAGA | 60.0 | 0.01 |
| mm3_intergenic_Arhgef39|Gm12454_chr4_43503634_R | GTCTCGTGGGCTCGGAACTGGATGGGCGTGTCAAA | 60.1 | 0.01 |
| mm4_intergenic_Rnu1b6|5S_rRNA_chr3_96460453_F | TCGTCGGCAGCGTCCCACCCAGGAGTGACATCAC | 60.0 | 0.00 |
| mm4_intergenic_Rnu1b6|5S_rRNA_chr3_96460453_R | GTCTCGTGGGCTCGGTAGGGGTAAGAGACGGTGCA | 59.9 | 0.00 |
| mm4_intergenic_Fcgr1|Gm24830_chr3_96328137_F | TCGTCGGCAGCGTCTGCGCAAGTGAGAAAGTCCA | 60.1 | 0.00 |
| mm4_intergenic_Fcgr1|Gm24830_chr3_96328137_R | GTCTCGTGGGCTCGGCCACCCAGGAGTGACATCAC | 60.0 | 0.00 |
| mm4_intergenic_BC107364|Gm26232_chr3_96450158_F | TCGTCGGCAGCGTCTAGGGGTAAGAGACGGTGCA | 59.9 | 0.00 |
| mm4_intergenic_BC107364|Gm26232_chr3_96450158_R | GTCTCGTGGGCTCGGCCACCCAGGAGTGACATCAC | 60.0 | 0.00 |
| mm4_intergenic_Gm16968|Adam6a_chr12_113528554_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm16968|Adam6a_chr12_113528554_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dapk1_chr13_60695169_F | TCGTCGGCAGCGTCTGTCTCAGTACCTCCGAGGG | 60.0 | 0.00 |
| mm4_intron_Dapk1_chr13_60695169_R | GTCTCGTGGGCTCGGGAACACACAACCAGATCTCATTC | 57.7 | 0.00 |
| mm4_intergenic_Tex16|Gm6335_chrX_112162509_F | TCGTCGGCAGCGTCTATACCGGGAGCAGCATGTG | 59.6 | 0.00 |
| mm4_intergenic_Tex16|Gm6335_chrX_112162509_R | GTCTCGTGGGCTCGGTGGCATTGGATTTGACTCCCA | 59.9 | 0.00 |
| mm4_intergenic_Psmd13|Gm15542_chr7_140890842_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Psmd13|Gm15542_chr7_140890842_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Dnaja1_chr4_40722599_F | TCGTCGGCAGCGTCAACTTTCCAGAACGCTCGGT | 59.8 | 0.00 |
| mm4_exon_Dnaja1_chr4_40722599_R | GTCTCGTGGGCTCGGGAGGGAGGCCGGAGACTC | 60.8 | 0.00 |
| mm4_intron_Trpa1_chr1_14877290_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Trpa1_chr1_14877290_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tbl1xr1_chr3_22144884_F | TCGTCGGCAGCGTCGGCCAAGGTAGAGGAGAAGC | 59.8 | 0.00 |
| mm4_intron_Tbl1xr1_chr3_22144884_R | GTCTCGTGGGCTCGGCCTGCACATCATCTGCCCTT | 60.3 | 0.00 |
| mm4_intron_Spats2l_chr1_57783095_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Spats2l_chr1_57783095_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sh3gl3_chr7_82213127_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sh3gl3_chr7_82213127_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Msh2_chr17_87686849_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Msh2_chr17_87686849_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Mcat_chr15_83548124_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Mcat_chr15_83548124_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Grin2a_chr16_9784088_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Grin2a_chr16_9784088_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Greb1_chr12_16750158_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Greb1_chr12_16750158_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm14040_chr2_129515346_F | TCGTCGGCAGCGTCAATTCTGTCTCGGCAAAGCC | 58.8 | 0.00 |
| mm4_intron_Gm14040_chr2_129515346_R | GTCTCGTGGGCTCGGGCTGGGGCTGAGTAAACCAA | 60.2 | 0.00 |
| mm4_intron_Gm12160_chr11_45175291_F | TCGTCGGCAGCGTCACCACTGAACATCTGCTGGG | 59.9 | 0.00 |
| mm4_intron_Gm12160_chr11_45175291_R | GTCTCGTGGGCTCGGCACTTTAAGGGAAGCCACGC | 59.4 | 0.00 |
| mm4_intron_Filip1_chr9_79828428_F | TCGTCGGCAGCGTCTTTGCCACCCTGATGCATCC | 60.9 | 0.00 |
| mm4_intron_Filip1_chr9_79828428_R | GTCTCGTGGGCTCGGGAGGGACCGAGGTGAAAGTG | 60.0 | 0.00 |
| mm4_intron_Fam131c_chr4_141371465_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fam131c_chr4_141371465_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dcc_chr18_71623072_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dcc_chr18_71623072_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cntn4_chr6_106193413_F | TCGTCGGCAGCGTCCCATGCCCTGTTTCTCCCTT | 59.9 | 0.00 |
| mm4_intron_Cntn4_chr6_106193413_R | GTCTCGTGGGCTCGGGTGACCTCTCTATGGTGCCA | 58.8 | 0.00 |
| mm4_intron_Chm_chrX_113185313_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Chm_chrX_113185313_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Casz1_chr4_148821083_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Casz1_chr4_148821083_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Bcor_chrX_12081883_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Bcor_chrX_12081883_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Batf2_chr19_6161622_F | TCGTCGGCAGCGTCGACTGGGAGCTTGGACGAAA | 59.9 | 0.00 |
| mm4_intron_Batf2_chr19_6161622_R | GTCTCGTGGGCTCGGCATTCCTAAAGGGTGGGGTCA | 59.3 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711714_F | TCGTCGGCAGCGTCCCAGGGATCACAGCTCCATC | 59.8 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711714_R | GTCTCGTGGGCTCGGGGATGGAACTGTGACCCCTG | 60.0 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711682_F | TCGTCGGCAGCGTCTCTCCTTCCCAGGGATCACA | 59.5 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711682_R | GTCTCGTGGGCTCGGGATGGAACTGTGACCCCTGG | 60.0 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711650_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711650_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711618_F | TCGTCGGCAGCGTCTCTCTTTCCCAGGGGTCACA | 60.1 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711618_R | GTCTCGTGGGCTCGGGATGGAGCTGTGATCCCTGG | 59.8 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711586_F | TCGTCGGCAGCGTCTCTCTTTCCCAGGGGTCACA | 60.1 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711586_R | GTCTCGTGGGCTCGGGAACTGTGACCCCTGGGAAG | 59.9 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711522_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711522_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711490_F | TCGTCGGCAGCGTCCAGGGGTCACAGTTCCATCC | 60.0 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711490_R | GTCTCGTGGGCTCGGTGTGACCCCTGGGAAAGAGA | 60.1 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711458_F | TCGTCGGCAGCGTCCATCCTCACTTCCCAGCTCC | 59.8 | 0.00 |
| mm4_intron_Atp6v0a2_chr5_124711458_R | GTCTCGTGGGCTCGGTGACCCCTGGGAAGGAGAG | 59.9 | 0.00 |
| mm4_intron_Ankrd46_chr15_36487485_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ankrd46_chr15_36487485_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Amfr_chr8_93979122_F | TCGTCGGCAGCGTCGGAAAGAAGGAGCCCGAACA | 59.9 | 0.00 |
| mm4_intron_Amfr_chr8_93979122_R | GTCTCGTGGGCTCGGGGGAACTTGGGAAGGGTTTG | 58.6 | 0.00 |
| mm4_intron_Agbl4_chr4_110841893_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Agbl4_chr4_110841893_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_n-R5s175|Gm2301_chr5_119313591_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_n-R5s175|Gm2301_chr5_119313591_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Zfp516|Gm26258_chr18_82958197_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Zfp516|Gm26258_chr18_82958197_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Urb2|Galnt2_chr8_124080542_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Urb2|Galnt2_chr8_124080542_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tasp1|Rps19-ps7_chr2_140070406_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tasp1|Rps19-ps7_chr2_140070406_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tada3|Arpc4_chr6_113378056_F | TCGTCGGCAGCGTCACTCGACCGCTACTGTCTCA | 60.3 | 0.00 |
| mm4_intergenic_Tada3|Arpc4_chr6_113378056_R | GTCTCGTGGGCTCGGCTGGACCATCTCGGGTAGGA | 60.1 | 0.00 |
| mm4_intergenic_Rps6-ps2|mmu-mir-8110_chr8_88925683_F | TCGTCGGCAGCGTCCACCCAGCCACTTGTCTCTT | 59.8 | 0.00 |
| mm4_intergenic_Rps6-ps2|mmu-mir-8110_chr8_88925683_R | GTCTCGTGGGCTCGGAGCACATCACCCAGGAAGTT | 59.2 | 0.00 |
| mm4_intergenic_Loxl4|Gm25216_chr19_42692212_F | TCGTCGGCAGCGTCTAGAGGCATGCTCTTGCTGG | 59.8 | 0.00 |
| mm4_intergenic_Loxl4|Gm25216_chr19_42692212_R | GTCTCGTGGGCTCGGGGGTCCCTGTGAACAAACCA | 60.1 | 0.00 |
| mm4_intergenic_Kirrel3|Gm23702_chr9_34947581_F | TCGTCGGCAGCGTCAGGCAAGAACTGACTCTGAGC | 59.9 | 0.00 |
| mm4_intergenic_Kirrel3|Gm23702_chr9_34947581_R | GTCTCGTGGGCTCGGGGGGTGCTCAGCTTCTTAGG | 60.1 | 0.00 |
| mm4_intergenic_Junb|Hook2_chr8_84987273_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Junb|Hook2_chr8_84987273_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Itgb4|B230344G16Rik/Itgb4_chr11_115987545_F | TCGTCGGCAGCGTCCCCCTGTGTGGCTTTGTCTA | 59.6 | 0.00 |
| mm4_intergenic_Itgb4|B230344G16Rik/Itgb4_chr11_115987545_R | GTCTCGTGGGCTCGGCTCGCTCACACCTCCATCTC | 59.8 | 0.00 |
| mm4_intergenic_Gm7488|Tbl1xr1_chr3_21995190_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm7488|Tbl1xr1_chr3_21995190_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm6245|Gcnt2_chr13_40796537_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm6245|Gcnt2_chr13_40796537_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5274|Gm23891_chr3_47166223_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5274|Gm23891_chr3_47166223_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26878|Fendrr_chr8_120927558_F | TCGTCGGCAGCGTCTCCCGTATTCCTCTCTTCCCA | 59.7 | 0.00 |
| mm4_intergenic_Gm26878|Fendrr_chr8_120927558_R | GTCTCGTGGGCTCGGCCACCACCCTAGCAGTGAAG | 60.0 | 0.00 |
| mm4_intergenic_Gm26480|Gm6863_chr12_96308239_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26480|Gm6863_chr12_96308239_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26228|Gdf10_chr14_33789539_F | TCGTCGGCAGCGTCAACCCTGACCTACAGCCTCT | 59.8 | 0.00 |
| mm4_intergenic_Gm26228|Gdf10_chr14_33789539_R | GTCTCGTGGGCTCGGCAACAGCATTGCGAAGACCC | 60.1 | 0.00 |
| mm4_intergenic_Gm25985|Gm6404_chr13_115224861_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25985|Gm6404_chr13_115224861_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25839|4930587A21Rik_chr1_61513298_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25839|4930587A21Rik_chr1_61513298_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25264|Gm25959_chr2_47462084_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25264|Gm25959_chr2_47462084_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25051|Gm1818_chr12_47954362_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25051|Gm1818_chr12_47954362_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23666|U7_chr8_53026720_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23666|U7_chr8_53026720_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23314|Lingo2_chr4_36855168_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23314|Lingo2_chr4_36855168_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22914|Skap2_chr6_51782698_F | TCGTCGGCAGCGTCCGGGGTCACTGGTTCTCTTC | 60.0 | 0.00 |
| mm4_intergenic_Gm22914|Skap2_chr6_51782698_R | GTCTCGTGGGCTCGGGTCTTCCTCAAAGGGGCTCC | 60.0 | 0.00 |
| mm4_intergenic_Gm22438|Gm22159_chr1_109393847_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22438|Gm22159_chr1_109393847_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm17054|n-R5s37_chr16_61132857_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm17054|n-R5s37_chr16_61132857_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm15756/Aldh1l1|Aldh1l1_chr6_90597133_F | TCGTCGGCAGCGTCAGGAGGAGACTGAGTCAGCA | 59.5 | 0.00 |
| mm4_intergenic_Gm15756/Aldh1l1|Aldh1l1_chr6_90597133_R | GTCTCGTGGGCTCGGTTTTGCTCATCTGGGCCTGG | 60.6 | 0.00 |
| mm4_intergenic_Gm14920|Gm14918_chrX_117237814_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm14920|Gm14918_chrX_117237814_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm14318|B230312C02Rik_chr2_180352653_F | TCGTCGGCAGCGTCGCATCCTCACAAGGTGGGAA | 59.9 | 0.00 |
| mm4_intergenic_Gm14318|B230312C02Rik_chr2_180352653_R | GTCTCGTGGGCTCGGAGGAGGATGTGGTACTGGCA | 60.2 | 0.00 |
| mm4_intergenic_Gm13323|H2afb1_chr2_17865943_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm13323|H2afb1_chr2_17865943_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12450|Spag17_chr3_99806993_F | TCGTCGGCAGCGTCGGAAGTCTTCATTCCGCCCA | 60.0 | 0.00 |
| mm4_intergenic_Gm12450|Spag17_chr3_99806993_R | GTCTCGTGGGCTCGGTCAACGTAGAAGACTGTTTTCCT | 57.7 | 0.00 |
| mm4_intergenic_Gm10398|Gm26660_chr14_24978689_F | TCGTCGGCAGCGTCGTGTGACTCTGTGCGTCCTT | 60.2 | 0.00 |
| mm4_intergenic_Gm10398|Gm26660_chr14_24978689_R | GTCTCGTGGGCTCGGAAGGGTGTGCAGAGCTCTTC | 59.9 | 0.00 |
| mm4_intergenic_Fbxo2|Ptchd2_chr4_148173939_F | TCGTCGGCAGCGTCAGTATCGGGCTGCGTTTGAA | 60.0 | 0.00 |
| mm4_intergenic_Fbxo2|Ptchd2_chr4_148173939_R | GTCTCGTGGGCTCGGTCGGCGAGCAGAGTAATTGG | 60.1 | 0.00 |
| mm4_intergenic_Elmo1|Gm7611_chr13_20680589_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Elmo1|Gm7611_chr13_20680589_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Efcab4b|Prmt8_chr6_127661089_F | TCGTCGGCAGCGTCATATGCTTGAGCTTGGCCGA | 59.8 | 0.00 |
| mm4_intergenic_Efcab4b|Prmt8_chr6_127661089_R | GTCTCGTGGGCTCGGTAGGTCCATTCTCCCAGGGG | 60.0 | 0.00 |
| mm4_intergenic_E230025N22Rik|Cd14_chr18_36698218_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_E230025N22Rik|Cd14_chr18_36698218_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cdk19|Slc22a16_chr10_40568159_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cdk19|Slc22a16_chr10_40568159_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Agbl3|Gm13864_chr6_34785928_F | TCGTCGGCAGCGTCTGTGTCAGAGCACACGTGAA | 59.8 | 0.00 |
| mm4_intergenic_Agbl3|Gm13864_chr6_34785928_R | GTCTCGTGGGCTCGGAGGCAGAGACAAAGGGATTGA | 59.0 | 0.00 |
| mm4_intergenic_Adss|Gm16432_chr1_177802134_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Adss|Gm16432_chr1_177802134_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Frmd4a_chr2_4401119_F | TCGTCGGCAGCGTCCGCTAGGGAGGCAGAAGATC | 59.6 | 0.00 |
| mm4_exon_Frmd4a_chr2_4401119_R | GTCTCGTGGGCTCGGGCTCGATCGCTTGCGAAG | 59.3 | 0.00 |
| mm4_exon_Dnm3_chr1_162134565_F | TCGTCGGCAGCGTCGCTGGACATGAAGCCCTTCT | 60.0 | 0.00 |
| mm4_exon_Dnm3_chr1_162134565_R | GTCTCGTGGGCTCGGGGTGTGTTGGTTGCCATTGG | 60.2 | 0.00 |
| mm3_intron_Cib4_chr5_30540205_F | TCGTCGGCAGCGTCCCGTTGCCTTCCTTGAGCTT | 60.8 | 0.00 |
| mm3_intron_Cib4_chr5_30540205_R | GTCTCGTGGGCTCGGGGGTATACACATATCTGAGACAGCT | 59.5 | 0.00 |
| mm3_intergenic_4930564D02Rik|1700095B22Rik_chr3_105268394_F | TCGTCGGCAGCGTCTCCATTTTCGCTCCAGTTGT | 57.7 | 0.00 |
| mm3_intergenic_4930564D02Rik|1700095B22Rik_chr3_105268394_R | GTCTCGTGGGCTCGGGTAGAAGGCATGCACCTCCA | 59.7 | 0.00 |
| mm3_exon_A930016O22Rik/Ckm_chr7_19419065_F | TCGTCGGCAGCGTCACTGAAGATTGCTGAACTCTCA | 57.3 | 0.00 |
| mm3_exon_A930016O22Rik/Ckm_chr7_19419065_R | GTCTCGTGGGCTCGGAGGGGCGTTGTATACCTCCT | 60.0 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm3_intron_Erbb2_chr11_98415644 |
CCTTTCTCTTGGGCCCTCTGCAGTGCCAGGGATGGAGGGCCGGAAGGTGCAGAGATCACTAGGACATACAGGCTCATGGG AATGATGTGGGCAGG |
| mm3_intron_Llgl2_chr11_115854045 |
GCCTGTGGCCTCTGTGAGGTTGGGGGAGTGGGAGGGGGGTCTCAGGCACTGCCAGGGATGGAGAGCCAAGAGTATCTCAG ATGTGGAGCTCTGTCGG |
| mm4_intron_Gm20681_chr8_122374323 |
GCAAGAGTGAGAAGAGGGGACTTTGGTATTAACTCAGGCAAGAGCCAGGGATGGAGAGCATAGAGAACAGGAGGGAAGTT CAGAATCCATCTGGAAGGCCGACTCGTTCCCCAGTTCATCTCCCCAGCCTCT |
| mm4_intron_Slamf8_chr1_172589020 |
CCAATGCAAGATAAAGGTGGAAACTTAAACAAAGGAATGGAACCACCGGGGATGGGGAGCCAGAAAGAGTAATACTGTAT GTAGTTAGCAAACTCTAGTATTAGATTTGGTTTGAGAGTGAAGCGGGA |
| mm4_intergenic_Gm22184|Asprv1_chr6_86606636 |
AAGGTTGTCAGGGCCCAAATCAGATGCCTTTCTGTTCTCCACCCCAGGTAAGCACAAGGGTGACTCAGCTGAGAGCCCTG CCCTCAGTGGAACCAGGAGTCTGATGGC |
| mm3_intron_Ece1_chr4_137922950 |
TCAGAGCATCCTGTTGCCAGTGTAGGCCCAGAACTGTCTGCCCAGCTCTTGGCCCAGGGATGGAGAGCAGACAGGCTGCT CTGGGACTCCCCTTAAGAACCCTAATACGTGTCTCCAGGACTCAAAGAGTGCCC |
| mm4_intergenic_Gm15668|Kif22-ps_chr1_67389534 |
GGTTTTCAGCATGCACTTCCATTAAAATCTGTCTTTCTGCTCACCATCCCTGGTCCTAGGGGAATGTCTTTTATATGTCC AGGC |
| mm4_intergenic_Gm6462|Gm25586_chr1_28959563 |
CCCTACCATGGGCAGAACCTATGGAGAATAGAATATTGTCCCTGGAATGGAGAGCTGGCAGGAGCTAAATCAGATAACAC CATTTTTGCTTTCAGTAATTGAACTTTAATCCTATTTTGAGAGTCATTTCAGTAAGAGGT |
| mm4_intron_Kcnq1_chr7_143148909 |
GGCCACCTTGGATGATGACACCCAGGGATGGAGAGCTTAGTGGAAGGGAGACTTATCTTCCCAGTGCCCTTGGAATCAGA GC |
| mm4_intergenic_Gm649|Gm14805_chrX_89337902 |
GGGGATAAATCACCCTCCATGGATCCTTGGATGAAGAACTGAAAGGAAACCCAATTTAACTATTTCTATGTAACAATGAT CTTGAATACCATGGGACAGATTTGTGAGACCT |
| mm4_intron_Tnni1_chr1_135803713 |
CCTCAGAGAACTCAGCCTGCATGTAGTCCAGGGGTGGAGGGCTGAAAGTAAGTTGGTGTGCTGACTCAAGTGGAGAGGTG ATGTCACTGATGGAGGGGACTCTTGGCCTGGATAGTCGGA |
| mm4_intron_Vmn2r19_chr6_123313854 |
GGAGCAGCTGTCTTCCTGAGAGCAACACCTGGATTGGAGAACTGAAAGGAGCCTAGGCTTGTCCTGTCAGCAGGACAACA TGTCTTTCTATCACAGCCTCTGGC |
| mm4_intergenic_Atl3|Pla2g16_chr19_7549687 |
GCCCAGAAAGACTTGTTGGCATTCTTCCTGCTTTCCATCCCTGGTTGAGGATTGTGTCAGGTGAGGAAAAGGGCCTCACA GTTTAGCAGGGGAGGG |
| mm4_intergenic_5033426O07Rik|Gm26815_chr8_121249014 |
CCCTCATGTCACACTTCCCCTGCATTGAGTCACCGTTCTGCCTGTCCCTAGCAGGCTGGCCCAAGGCCACCCGTGGGTGA AGAGCCGAAAGGTCAGCTGGGGTGTTCCCATTGCATCATGGGTCC |
| mm4_intergenic_Ccdc154|BC003965_chr17_25173861 |
GCAAGTTAGGGCTGGCAGTACCCACTAGATGAGCCTGGATGTGTGACCCACAAAAGGCTGCTTCAGCTCTTTCCTCTCTC CATCCCTGGACCTCCTGAGCTCAGAGAGGACCTGGCTTAGAGGG |
| mm4_intergenic_Vimp|Chsy1/Gm26827_chr7_66092633 |
TTCCTTGGCATCGTCTTCCCGCAGACCCTGGGATGGAGGGACAAAAGGGATGAAGTGATGCGCAAGGGCAGTGGGCTCGC CCAAATGGCCTGATTTGGAAGATGTGC |
| mm4_intron_Tns1_chr1_73926758 |
AGCCCGGTACAGAGACAGAATGAGGAAGAAGCCAGGGAATGAGAGAACCTGACTCCTACCACCTCTCCATCCCTGGCACA GGTGGCCTCCACCTTGTGGGGAGGAAGGAAGGCGGACTGAACGTGTAG |
| mm4_intergenic_Gm13508|Gm25215_chr2_49348546 |
CCTGCGGAAGAAGATGGTGATGGGGGGGGGGGGGGCAGTTTTGCTGACCTGGGGTGGAGAGGAGAAAGGTAGAGTATATT TGGGGACTGTGCAGGGCTATAGGGCCTGGGCATTC |
| mm4_intron_Cdkn1a_chr17_29095488 |
ATCGTGACGTGTTTTGTGGCCCGGGGTCCCCCTCCTTTCCTCTCCTCTCTCCACCCCAGGGTGACGCGCAGCTCCGGTGC CCAAGCAGTTTTGGCGGGCGGGCAGCGCCGGGCAGGAAACTGACTCACCA |
| mm4_intron_Cntnap2_chr6_47137544 |
AGAACTTTGGGTGAGATGACTCAAATATTTTTATCAATCATTTCCTCTCCCCATCCCTGGAAAGTCTGTTCTGTTTGTAA CTCACTGCATTAATTGCTAATGCCCTTCCTTCTGATGCTG |
| mm4_intron_Cntnap2_chr6_47119116 |
AGAGCTTTGGGTGAGATGACTCAAATATTTTTATCAATCATTTCCTCTCCCCATCCCTGGAAAGTCTGTTCTGTTTGTAA CTCACTGCATTAACTGCTAACACCCTTCCTTCTGATGCTGGCCCAAA |
| mm4_intron_Rreb1_chr13_37833082 |
AAGACAGGATGGGGAGGGAACGAGGAGGGGGCCCAGGGATGGAGGGGAGAGAGGAAGTGCTTGTTTGTATGGGACCCCAG C |
| mm4_intron_Mettl15_chr2_109205877 |
ACAAGCATTTCTTCTCTGTTCCTTCCATACAGCTCTCCATACCTGGAGTTAAGCATGATAACATGGATTTTTATTCTCAG TAGCCAGTACTTGGCAAGTTGATAGAGAAATATAATCAGTCCCAGACATATCTAGCA |
| mm4_intron_Dusp10_chr1_184034806 |
AGTCTTTTGGCTCTGCTTGCCCTGGGATGAAGAGGGGAAATGAGTTTTGGTTTGGTTAAGATGCTTTATGGCAGTTTTCA AAGCCCAAGGCTTTGCTCATGATGCTCAGTGGTGGCACGGAATA |
| mm4_intron_Pld5_chr1_175987635 |
TCATTTCCTCCTCCCTCCTTTATTCTCTTTGTCTCTCCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCACCATTTCAGTCATGTCCA |
| mm3_intergenic_Gm16087|Gm16086_chr12_107027851 |
AGACAGAGGGACAGACGCTAGGCACCCCAAGTTCCCTGCTCCATTAGCCTCTCCATCCCTGGGACCACATTCTCCTGGCA GCAGCCACAGTAATGGACAACTTTCCCCGGGGCGGGGTAACTTCAGAGAG |
| mm4_intergenic_Tmem189|Gm22355_chr2_167644223 |
GCCTGCAGCAGACACAGTTATGGGGGTAGTGAGGAGAGCCAGCCCTGGGGTGGAGAGCCCTCAGGAGACAGGCAGAAGAA GGTGGAGCACACAGAAAGAGAGAGACCTCTTTCAAGTGCGGCTT |
| mm4_exon_Tulp2_chr7_45520993 |
GAAAGCACAGGGTCAGACCAACTGCAATGCAAACTATCTTGCCAGGAGACCAATGTCTTGGGATTCAGGGGGCCTCGGAA AATGACTGTGATCCTTCCAGGAATGGACAGCCGGAAGCAGAGGATGAAAGTCCAGCCACA |
| mm4_intergenic_Asphd2|Sez6l_chr5_112392254 |
TCAGTCACCGTGAAAGGGTTTTCATGACGTCCAAACCTGGGATGGAGACCAGAGAGCAGCAACGTGAATGTTATAGACTA GAAAAGGCCTAGCAGTTCCGGGAAGATGGAGATCCAGC |
| mm4_intron_Mad1l1_chr5_140044611 |
CCACATGGGGCTCTCAGAATTTCCTGGGATTGAGAGCCAGGAGGAGGAGGAGAGTAATGGGCACAGTGCCTGGAGTCGCA GAGGTCAGTA |
| mm4_intron_Elfn1_chr5_139913296 |
TCCCCATAAACTTGGAGCGGTCCTTATGGCTGTCCATCCAGGGGTTGGGGTTAGGAGTCTGTGAAACCGATCTCCCTCCA TTCCTAGCCTGCTTCTTCCTTAAGCTAGTGCCAGAGGGTGTCCCAGGCTGTGTTTA |
| mm4_intron_Golm1_chr13_59674221 |
TGAAAAGACCAAAGCCCTGCTCCCTTCCCCTCACCATCCCAGGACTTCCAGGGCTGCTCTGCAGGCCCAGGCTTCCTGCA AGCTCCCTCCCTCTGTCCTCCAACT |
| mm4_intron_Tenm4_chr7_96468903 |
AAGGTGTTGGCCTTGGCAAAATAAGTAATATCATGGCCAGAGATGGAGAAGAGAAAGGAGAGTCAGCAGCTCTTTATGCA GTTGCTATGAGCAAGGCTGTGCTGTTTTAGTGGATGCTTGAACTTAGGGGTGGGGAGAGG |
| mm4_intergenic_Gm13855|Gm14546_chr6_34253093 |
CAAGCCCTCAACGACAGCTAGCTGTTGGTGTTAGCGTAACACCTCTTAATTCTGTTTATATTACCTATCGCCTCTCCAAC CCAGGTAACAAAAGTTAGAAGAAAGCCATACCAACACTCAATGTG |
| mm4_intergenic_Gm22777|Spock1_chr13_57139054 |
GCCGTGAGTCACATCCAAGACCCTCTTTCCAGCCGTCTCCCTCCTTCATCTGTTTCTCCAGCCTTCCTTCTGGTCTCCAT CCCAGGATCACAGCCTCCCAGTTCATCC |
| mm4_intron_Ksr2_chr5_117576372 |
GCTGTTTCTCAACTGGCCTTTATTGTGAAACACTTTGAGATGCATAAAATGTTATAGCACAGAGTTTCCTACGTTCCTTT CAGCTAGTCATCCCCGGCTCAGCACTGCCCAGGAAGGCTTCTACCTT |
| mm4_intron_Epha10_chr4_124914650 |
ATCCCGCCTAGAGTCCCTGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATGTTGGGTAATTG GAAGCATCCTGTCTGCTCCCCATCACTGGAGCCTAGGTAATCAAGGCCGTGGAGGATG |
| mm3_intergenic_Rell1|Gm25608_chr5_63969227 |
TGGGTCCTGGGACTAGTCAGATGCGGGAAGAGGAAGGCAGAGGTTAGGCCAGGAAGCCCAGGATGGAGAGCAGACAGGAC CAGCAGTTTCAGAATGGCG |
| mm4_intron_Ppfia2_chr10_106738410 |
GGATCCTGACAGCTGCCATTGGTGGGCAGGATGGAAAAGGGCCCGAGATGAAGAGAAGAAAGGATGGCACTGTTCTTAGT ATGCATTCTTCCTTCTTCTACCCAGGTTACTGTCATCGAGTGTCACAGACCCA |
| mm4_intergenic_Gm25491|Eya1_chr1_14163370 |
GACTAAGATGCCTGCCCCTCCCCTGACCAGCTTTGCCTCTGGCACACCTGCTGTGTGGCTTCCTTCCACCTCTCAATCCC TGGGGCTTCCCTTGGACAAGCTCT |
| mm4_intergenic_Gm22845|Nt5c1b_chr12_10070541 | ACACTTGGAAATGGCCTCCATCTCATTGCCTGGCATGGGGAGCTGGAAGGAACCCTCCACAGTCATAGCACA |
| mm4_intergenic_9030612E09Rik|Pdss2_chr10_43214980 |
GGGATACACACAGTATTACATAGCATTTTTAAGCAATGATAGATAAAATGAAAACCACCCCAGGGTGGAGAGGCAAAAGG ACTAGAATTGAGAATGATCTTGTGGGC |
| mm3_intergenic_Acox3|Htra3_chr5_35622138 |
GGGCCTCAGTGAACCATACATCAAGAAAGTCTTGTCATACCAGTCAGCTCCATCCTGTCACCTCTCCATCCCAAGTCATC CAAGATTACACCAAAGCCTGAGCACA |
| mm4_intergenic_mmu-mir-6378|Gm25442_chr3_35066689 |
GGAAAGGAAAGAGGCCGCTTATTCATCAGTTGCTGCACCCCCCCCCAGCACCACCCCCCCAGCTACCCCACCAGAGATGG AGAGAAGCAAGGAACACCTCCAGCATGTCTTTTACAGGACAACCCACCCA |
| mm3_intron_Dscam_chr16_96736513 |
GGCTGCAAGAAAAGCATCCCTGTTTCAGAGTCCCACTTGAAATCAGAGAATTGGTTGCTTTCTGCTATCCATCCCCAGTC AGTGGCAAAGTCAGTGAGTCTCAAGCATGAAAGTGCTGACCCAC |
| mm4_intergenic_Rnf144b|4931429P17Rik_chr13_47636421 |
AGGACTCAAGAGAAACCCCAAAGAAACTGAAGATGAATATAAAAGACAGAACCAGGGATGGAGAGAGCATAGGACAAAAC ACCAACTCTGCCTTCTTCTCAATCTTGCCTGGGGGGACCTGGACCTAATGAG |
| mm4_intergenic_Rora|F830001A07Rik_chr9_68775566 |
GTAGAAACGCTGGGCTCTCCTGTTAGCTTGATTAGCAGGACACTACTTGTATCTTCCCCTGGATGGAGCCCCGTAAGGAT CAGTACATCCAGTTCCCAAACCCC |
| mm4_intron_Gse1_chr8_120304608 |
AGTGACCAAACCCTCTGCAGGGCTGAGCGATGTCCAAATTCCTGTTCCTTTTGGACCTCCATGCCAGGCCTTCTAGAAGG GAGCCCTGTTTTGTGAATGGGCCG |
| mm4_intergenic_Rxfp3|Adamts12_chr15_11063185 |
GCAAAACACAGGAGCCAGTGTCCCTCAGAAAGTCTTGATAGCTATGTTTCCCAGTGTGGAGTCCTTTGGGCTTTCCATCT AGGGCCTTGCATTTTGGGTCCCTG |
| mm4_intron_R3hdm1_chr1_128131647 |
ACCTGGAACTTGGGGAGACTGAAGACCAACCTGAGCTAAACCGTGGACGGAGGGCAGAAAGGAGAGAGGGTTGATTTCAG AAGACATTGTGGATAATGATAGACAGTGAGTTGGAACAGTGA |
| mm4_intergenic_Gm25736|Tmeff2_chr1_51029470 |
AGAGCTGGATATATGGCTCCATAGTAGAATGTTTGTTTCATGTGTGTAAATTTTTGGATTATATCCCTGGCATGGAGAGA AGAAATGAAAGAAAGAAAATAGGGGGCAGGGAGGAAAACTCACT |
| mm4_intron_Frmd4a_chr2_4414130 | TGTTCTCACTGGTGCCATGGGACACCTGGCATGGACAGCTGAAGGGAATATCAGGAAGTGCAGTCTATCATGGCAGCC |
| mm3_intergenic_Chrm1/Gm22820|Slc3a2_chr19_8695728 |
TGTCCTTGCTCTGCTTCCTGGAACTACTCTGTTCAGCCTTGTCTCTACCCTGGGAGTGCATCCTCCAGTCCCAAGAATAA AACTGACATCATTCTCTCCTCTTGTCTCTCCATCCCAGAGCCCAAGTCCCTATGTGGAA |
| mm4_intron_Ncapd2_chr6_125189713 |
GGCAGGGACTAGGAAAGACCTCCCTGGCCCAGATGGAGTGTCCCGGGGCTGTAGAACAGAAAGGATAACATCATTGCATG GAGTCTCTCACCTCTAAGCTGGGATGAGAGGTGCTTGACG |
| mm4_intron_Atm_chr9_53476837 |
TCCATCCGAGGTGGCTAGTATCAAGTAGAACTCAGAAGACAGTGAGGGGATCTCTACTGCTGAACCAGAGCTGGAAAGCA GAAAGGATGAGGGGCACAGAGGGAACACAACTGGCAGGATGTGCATTCA |
| mm3_intron_Ccl1_chr11_82254769 |
ACCTGACTGAGATTGGCAGCAGCTTGTCTCTGGAGTGACCATCTCAGGGATGGAGAGTGGAAGGGACAACCCAGAAGTGT GGCCTGTGGAAC |
| mm4_intergenic_Pou3f1|Utp11l_chr4_124664679 |
CCCACATGGAAAGAGGGCTTGCCTCGGGTTTGTAGCAGGCATAAGGCCCCGTGTTATTTTTATTTCTTTTCTCTCGGCTC TCTGTCCCTGGAGGGTTCTGGGGAATAGCGGTGGCTCCGTTGCTCTCTCACACCCGAT |
| mm3_intergenic_Arhgef39|Gm12454_chr4_43503634 |
CCCTCAAGCGCCAGTTAAGAGTATGACCCCATCTGCTCCTGTGGCCTCTCCATCCCAGAGTAGACTAGCTATTCCCACAG GCTGCCTTTGACACGCCCATCCAGTT |
| mm4_intergenic_Rnu1b6|5S_rRNA_chr3_96460453 |
CCACCCAGGAGTGACATCACGCCCCTTCCTTTCGCCGCCCGATCCCGGGGCCTGTTGGACTTTCTCACTGGCGCAGTGCT GGAGCGGTGAAGGACCAGGGACAAGTCACCTTGCACCGTCTCTTACCCCTA |
| mm4_intergenic_Fcgr1|Gm24830_chr3_96328137 | TGCGCAAGTGAGAAAGTCCAACAGGCCCCGGGATCGGGCGGCGAAAGGAAGGGGCGTGATGTCACTCCTGGGTGG |
| mm4_intergenic_BC107364|Gm26232_chr3_96450158 |
TAGGGGTAAGAGACGGTGCAAGGTGACTTGTCCCTGGTCCTTCACCGCTCCAGCACTGCGCCAGTGAGAAAGTCCAACAG GCCCCGGGATCGGGCGGCGAAAGGAAGGGGCGTGATGTCACTCCTGGGTGG |
| mm4_intron_Dapk1_chr13_60695169 |
TGTCTCAGTACCTCCGAGGGATTGCCATGTAATTGCATGGCCTCATTGTTATCTAACCACTCGCTGTCTTGCTAACTTCC TTTCTGATCTCCATGCGTGGGAATGAGATCTGGTTGTGTGTTC |
| mm4_intergenic_Tex16|Gm6335_chrX_112162509 |
TATACCGGGAGCAGCATGTGGCGGAGCTGCGCTGTGCTCCACTCCTTTCTGCTCTCCGGCGCTGGCCCGCTCACCGGCTG TAAAAAATGATGAAAGAAACCACTTACTACGATGTTTTGGGAGTCAAATCCAATGCCA |
| mm4_exon_Dnaja1_chr4_40722599 |
AACTTTCCAGAACGCTCGGTGGGTGGTGGAGGAGCAGCGTGTGGCTGAGCTGCGCTGTGCTCCGCTCCTTTCCGCTCTCC GGCGCCGGCCCGCTCACCGGTGAGTCTCCGGCCTCCCTC |
| mm4_intron_Tbl1xr1_chr3_22144884 |
GGCCAAGGTAGAGGAGAAGCTGATGGAGAACCAGTCCTAAAGTGCTATAGTGCACAAGTGCTGGAACCTGGGCTGCAGAG CAGACAGGACTGTGTCTCTAGAAAGCAAATGTAAAGTAAAGGGCAGATGATGTGCAGG |
| mm4_intron_Gm14040_chr2_129515346 |
AATTCTGTCTCGGCAAAGCCCAGCGAAGCGATTTATCTCCTTTCCCGGGAGGGAGGGCAGAAGGGAGAGAAGGGAGCCCA GGAAGCCAGAACATTTCCCTTTCTCAGGGCCAGACTTGGTTTACTCAGCCCCAGC |
| mm4_intron_Gm12160_chr11_45175291 |
ACCACTGAACATCTGCTGGGAATCAGAGTTCTACACCCAGGGAAGGAGAACCGTACGGAGGGCGTGGCTTCCCTTAAAGT G |
| mm4_intron_Filip1_chr9_79828428 | TTTGCCACCCTGATGCATCCATCCCCTTGGGCTCTCCTTCCCAGGTGTCACTTTCACCTCGGTCCCTC |
| mm4_intron_Cntn4_chr6_106193413 |
CCATGCCCTGTTTCTCCCTTGAGATGCCTCTCGGCTCTCATTCCCAGGGAAGAATTCCATATGGCACCATAGAGAGGTCA C |
| mm4_intron_Batf2_chr19_6161622 |
GACTGGGAGCTTGGACGAAAGAGCGATTGTGTTCTCCTTCCAGCTCTGCCTCCCTGGGGTGGGAGACCTTAACTCTCTGG GTTTTATGACCCCACCCTTTAGGAATG |
| mm4_intron_Atp6v0a2_chr5_124711714 |
CCAGGGATCACAGCTCCATCCCGCTCTCCTTCCCAGGGGTCACAGCTCCGTCCCGCTCTCCTTCCCAGGGATCACAGCTC GTCCCGCTCTCCTTCCCAGGGGTCACAGTTCCATCC |
| mm4_intron_Atp6v0a2_chr5_124711682 |
TCTCCTTCCCAGGGATCACAGCTCCATCCCGCTCTCCTTCCCAGGGGTCACAGCTCCGTCCCGCTCTCCTTCCCAGGGAT CACAGCTCGTCCCGCTCTCCTTCCCAGGGGTCACAGTTCCATC |
| mm4_intron_Atp6v0a2_chr5_124711618 |
TCTCTTTCCCAGGGGTCACAGCTCCGTCCCGCTCTCCTTCCCAGGGGTCACAGCTCCATCCCGCTCTCCTTCCCAGGGGT CACAGTTCCGTCCCGCTCTCCTTCCCAGGGATCACAGCTCCATC |
| mm4_intron_Atp6v0a2_chr5_124711586 |
TCTCTTTCCCAGGGGTCACAGCTCCGTCCCGCTCTCCTTCCCAGGGGTCACAGCTCCATCCCGCTCTCCTTCCCAGGGGT CACAGTTC |
| mm4_intron_Atp6v0a2_chr5_124711490 |
CAGGGGTCACAGTTCCATCCCGCTCTCCTTCCCAGGGGTCACAGCTCCGTCCCGCTCTCCTTCCCAGGGGTCACAGCTCC GTCCCGCTCTCCTTCCCAGGGGTCACAGCTCCGTCCCGCTCTCTTTCCCAGGGGTCACA |
| mm4_intron_Atp6v0a2_chr5_124711458 |
CATCCTCACTTCCCAGCTCCGTCCCTGCTCTCCTTCCCAGGGGTCACAGTTCCATCCCGCTCTCCTTCCCAGGGGTCACA GCTCCGTCCCGCTCTCCTTCCCAGGGGTCA |
| mm4_intron_Amfr_chr8_93979122 |
GGAAAGAAGGAGCCCGAACATATAAGCAATACCCAGGATTAACTCCCAAGAGCTCCACCNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNTGAAAAAGAAAAGAATTTCCTTTGACAAACCCTTCCCAAGTTCCC |
| mm4_intergenic_Tada3|Arpc4_chr6_113378056 |
ACTCGACCGCTACTGTCTCATAGCAGGTCTTCTACAAGTCCCAGAGGTCCCAGTGTGAAATCGCCCCGGAGATCTGAATA TCTCTCGGCTCTCCCTCCCCGGTCCTACCCGAGATGGTCCAG |
| mm4_intergenic_Rps6-ps2|mmu-mir-8110_chr8_88925683 |
CACCCAGCCACTTGTCTCTTCCTTGGGCCTGTTGTGGCAGCTTGGGCCAGGTTGGCTGTTGTATTCAGCACCATGGCTGC AGAGACGAAAGGATAACTTCCTGGGTGATGTGCT |
| mm4_intergenic_Loxl4|Gm25216_chr19_42692212 |
TAGAGGCATGCTCTTGCTGGTCTCTCTCTCTCTAACCCTCCTTCCTTTCCTTTCTCCTTCCCGGGTCTCCCCACTGGTTT GTTCACAGGGACCC |
| mm4_intergenic_Kirrel3|Gm23702_chr9_34947581 |
AGGCAAGAACTGACTCTGAGCAGAGCTTTAGCTTCCCTGGGAGGCAGAGGAGAAAGGAGCCAGAGAATGAGGGGAAAGTG GGGGAGTGAACTGTACCTAAGAAGCTGAGCACCCC |
| mm4_intergenic_Itgb4|B230344G16Rik/Itgb4_chr11_115987545 |
CCCCTGTGTGGCTTTGTCTACGGTTTCTTCTCTTCAGCTCTCCTTCCCAGGGGTGGTGGGGAATGAAATAGTAAGCTAGG TGTATCTGGAGAAGGGCAGACAGTTAATAGAGATGGAGGTGTGAGCGAG |
| mm4_intergenic_Gm26878|Fendrr_chr8_120927558 |
TCCCGTATTCCTCTCTTCCCATCTTTCCTCCTCCCTCCGGCTCCCCCTCCCTGGCCAGGATAAAGAAACATAGTTTCTTT TAGCTAACAAAGGATATAGAACAGAAAGCAGACTCTTCACTGCTAGGGTGGTGG |
| mm4_intergenic_Gm26228|Gdf10_chr14_33789539 |
AACCCTGACCTACAGCCTCTGCCTCTCCTTTCCTCTCTGCCTCCCAGGGCTCCACATTGCCATCACAATTCTCCCTGGCC AGGGTCTTCGCAATGCTGTTG |
| mm4_intergenic_Gm22914|Skap2_chr6_51782698 | CGGGGTCACTGGTTCTCTTCTGTCCTGGGAAGGAGAGCCGAAGATAAAAGGAGCCCCTTTGAGGAAGAC |
| mm4_intergenic_Gm15756/Aldh1l1|Aldh1l1_chr6_90597133 |
AGGAGGAGACTGAGTCAGCAGAGAACCTGTGCACCATGCCTGGGCTGCCTGCCTCTTAAAACACAAAAGAGGTTCTGGCT TCCCTTTGCCTCTCCTTCCCTGGGCCAGAATGGCCTCCAGGCCCAGATGAGCAAAA |
| mm4_intergenic_Gm14318|B230312C02Rik_chr2_180352653 |
GCATCCTCACAAGGTGGGAAGAGACCAAAGGTCTGGTTCACCCTTCTGGCTCTCCCTCCCTGGACAGCTGTTTGCCAGTA CCACATCCTCCT |
| mm4_intergenic_Gm12450|Spag17_chr3_99806993 |
GGAAGTCTTCATTCCGCCCAGCATAGATCTATCTGGCAAACAGTCACCAAGGAAGGAGAGCAGAATGGAAATAAGTAGGA AAACAGTCTTCTACGTTGA |
| mm4_intergenic_Gm10398|Gm26660_chr14_24978689 | GTGTGACTCTGTGCGTCCTTTGCCACTTTCTGCTCTGCATCCCTGGACACTCAGTGGGAAGAGCTCTGCACACCCTT |
| mm4_intergenic_Fbxo2|Ptchd2_chr4_148173939 |
AGTATCGGGCTGCGTTTGAAATCAGACCATCCCGGGGAGGGAGCGCCGGAGGGAGGGAGCGCCAGCCCCCGGACCAATTA CTCTGCTCGCCGA |
| mm4_intergenic_Efcab4b|Prmt8_chr6_127661089 |
ATATGCTTGAGCTTGGCCGAGCCATAGTCCATGATGGCTGGACTGTGAGACTCAGGAAGTCAAAGGCATCCGTCCTTCCT GCCGCCTCTGCATCCCCGGCCCACTTGCTAGCTTACCACCCCTGGGAGAATGGACCTA |
| mm4_intergenic_Agbl3|Gm13864_chr6_34785928 |
TGTGTCAGAGCACACGTGAACTACAATTGCACTCATTTCTGCTCTCCCACCCTGGTCCCCAGTCTCTTTTCTTCAATCCC TTTGTCTCTGCCT |
| mm4_exon_Frmd4a_chr2_4401119 |
CGCTAGGGAGGCAGAAGATCTCATTGTTGTCCTGGGATCCAGTGGCGAAAGGAGGCCCCTCCAGCGGGCCCGCGCTCAAT CCCTGCTTCGCAAGCGATCGAGC |
| mm4_exon_Dnm3_chr1_162134565 |
GCTGGACATGAAGCCCTTCTCCACATCCCGGACCTTCAGGTTGTCCAGGGGAAGCATATATTTCTTTTCTTTCTCCTGGG ATACAGAGGTGAAAGGAGGGGATGTTAATAGAACATCACACCAATGGCAACCAACACACC |
| mm3_intron_Cib4_chr5_30540205 |
CCGTTGCCTTCCTTGAGCTTTTCCTCATTGCCATCCTTGTCACTAACATTTCCATCCATTTGCTAGGGTCCTTTCGTCTC TGCATCCTGGGTCTTTGAGTTTGATTACTAATTTTAGCTGTCTCAGATATGTGTATACCC |
| mm3_intergenic_4930564D02Rik|1700095B22Rik_chr3_105268394 |
TCCATTTTCGCTCCAGTTGTTTAAAGACATTCCACGAGCATCCTTGTGGCTCTGCATCCCAGGGGATATTCCAGGGAGAG ACTGCTTTATGACTCAAAGAGAGAAGGGTAGAGTAAATGGAGGTGCATGCCTTCTAC |
| mm3_exon_A930016O22Rik/Ckm_chr7_19419065 |
ACTGAAGATTGCTGAACTCTCAGAACCCTGGGATGCAAATCCGAAAGGAGAATCTTGGGATCCAAGGGGATATAACATTG GGTGTAGGACCTGTGGTCACAGGAGGTATACAACGCCCCT |