← return to the list of all guides
Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313821_F | TCGTCGGCAGCGTCAGGGAGCCTGGGATTAGGAG | 60.1 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313821_R | GTCTCGTGGGCTCGGCATGTCCTTTCGGCTCTCCA | 59.7 | 1.00 |
| mm4_intron_Csmd2_chr4_128299768_F | Primer3: not found at this Tm | N.d. | 0.75 |
| mm4_intron_Csmd2_chr4_128299768_R | Primer3: not found at this Tm | N.d. | 0.75 |
| mm4_intron_Pitpnb_chr5_111380806_F | TCGTCGGCAGCGTCAGTTGTGCCAGCACTTCAGT | 60.1 | 0.61 |
| mm4_intron_Pitpnb_chr5_111380806_R | GTCTCGTGGGCTCGGTGCTTGAGAGAAGTGGTCAGG | 59.6 | 0.61 |
| mm2_intergenic_Kctd3|Kcnk2_chr1_189088957_F | Primer3: not found at this Tm | N.d. | 0.59 |
| mm2_intergenic_Kctd3|Kcnk2_chr1_189088957_R | Primer3: not found at this Tm | N.d. | 0.59 |
| mm3_exon_Krba1_chr6_48416008_F | Primer3: not found at this Tm | N.d. | 0.55 |
| mm3_exon_Krba1_chr6_48416008_R | Primer3: not found at this Tm | N.d. | 0.55 |
| mm4_intron_Uty_chrY_1201504_F | Primer3: not found at this Tm | N.d. | 0.53 |
| mm4_intron_Uty_chrY_1201504_R | Primer3: not found at this Tm | N.d. | 0.53 |
| mm4_intron_Mgam_chr6_40634046_F | Primer3: not found at this Tm | N.d. | 0.53 |
| mm4_intron_Mgam_chr6_40634046_R | Primer3: not found at this Tm | N.d. | 0.53 |
| mm4_intergenic_Gm26099|Gm24809_chrX_37067034_F | Primer3: not found at this Tm | N.d. | 0.53 |
| mm4_intergenic_Gm26099|Gm24809_chrX_37067034_R | Primer3: not found at this Tm | N.d. | 0.53 |
| mm4_intergenic_Gm26076|Gm25519_chr3_111465444_F | Primer3: not found at this Tm | N.d. | 0.53 |
| mm4_intergenic_Gm26076|Gm25519_chr3_111465444_R | Primer3: not found at this Tm | N.d. | 0.53 |
| mm4_intergenic_Gm26341|Amd2_chr10_35532437_F | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intergenic_Gm26341|Amd2_chr10_35532437_R | Primer3: not found at this Tm | N.d. | 0.50 |
| mm3_intergenic_1700013D24Rik|Pex5_chr6_124392546_F | Primer3: not found at this Tm | N.d. | 0.48 |
| mm3_intergenic_1700013D24Rik|Pex5_chr6_124392546_R | Primer3: not found at this Tm | N.d. | 0.48 |
| mm4_intron_Ctnnd2_chr15_30302354_F | TCGTCGGCAGCGTCGAACGGACCTGCTTCACTGA | 59.9 | 0.45 |
| mm4_intron_Ctnnd2_chr15_30302354_R | GTCTCGTGGGCTCGGAGCGGTTCTGAAACAAGAAAGC | 59.9 | 0.45 |
| mm2_intron_Sufu_chr19_46477778_F | Primer3: not found at this Tm | N.d. | 0.44 |
| mm2_intron_Sufu_chr19_46477778_R | Primer3: not found at this Tm | N.d. | 0.44 |
| mm4_intergenic_BC017158|Rgs10_chr7_128307285_F | TCGTCGGCAGCGTCTGGACATCTCTCCCACCTGG | 60.6 | 0.43 |
| mm4_intergenic_BC017158|Rgs10_chr7_128307285_R | GTCTCGTGGGCTCGGACCTTGGGGTGTTCCAGAGA | 60.4 | 0.43 |
| mm4_intron_Sema4f_chr6_82931569_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intron_Sema4f_chr6_82931569_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intron_Ppa1_chr10_61653066_F | TCGTCGGCAGCGTCCCATAAGACTCCGCCGTCTC | 59.9 | 0.39 |
| mm4_intron_Ppa1_chr10_61653066_R | GTCTCGTGGGCTCGGGTCAGCCAAGGGTTACCACA | 59.8 | 0.39 |
| mm4_intergenic_6430571L13Rik|Cacna2d2_chr9_107366351_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_6430571L13Rik|Cacna2d2_chr9_107366351_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_Gm12066|Gm12068_chr11_24349134_F | TCGTCGGCAGCGTCGCGTATCAGAGGCTGAGTGT | 59.5 | 0.36 |
| mm4_intergenic_Gm12066|Gm12068_chr11_24349134_R | GTCTCGTGGGCTCGGTGTCATTAGCAGGCACCCTC | 59.7 | 0.36 |
| mm3_intergenic_Rora|F830001A07Rik_chr9_68823588_F | TCGTCGGCAGCGTCTATCGTGGTGGAGCTGATGC | 59.8 | 0.35 |
| mm3_intergenic_Rora|F830001A07Rik_chr9_68823588_R | GTCTCGTGGGCTCGGATGACTGACCATGCCTGACC | 59.7 | 0.35 |
| mm4_intron_Atg2b_chr12_105642191_F | TCGTCGGCAGCGTCACCATTAGCTACCAACAAACCCA | 60.1 | 0.34 |
| mm4_intron_Atg2b_chr12_105642191_R | GTCTCGTGGGCTCGGCCAGCAGGGTTTTAAGGAACC | 59.1 | 0.34 |
| mm4_exon_Tor1aip2/Tor1aip1_chr1_156035585_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_exon_Tor1aip2/Tor1aip1_chr1_156035585_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm22674|Cdyl_chr13_35541958_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm22674|Cdyl_chr13_35541958_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Raxos1/Rax|Cplx4_chr18_65941747_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Raxos1/Rax|Cplx4_chr18_65941747_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_exon_Syt13_chr2_92954521_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_exon_Syt13_chr2_92954521_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Syce1l|Adamts18_chr8_113688097_F | TCGTCGGCAGCGTCGATAGACAGGACAGAGCGGC | 59.9 | 0.28 |
| mm4_intergenic_Syce1l|Adamts18_chr8_113688097_R | GTCTCGTGGGCTCGGAGAGGGAGATACAGCCTGCA | 60.0 | 0.28 |
| mm3_intron_Plekha7_chr7_116288629_F | TCGTCGGCAGCGTCGGGATGACTACCTGGGGACT | 60.0 | 0.28 |
| mm3_intron_Plekha7_chr7_116288629_R | GTCTCGTGGGCTCGGGCCAGCAACTTCCTCTCACT | 59.9 | 0.28 |
| mm4_intergenic_Peli2|Gm23881_chr14_48361056_F | TCGTCGGCAGCGTCTCTTTCCACGGTGTGCTGTT | 60.1 | 0.28 |
| mm4_intergenic_Peli2|Gm23881_chr14_48361056_R | GTCTCGTGGGCTCGGCATTTCTCGAACCCCAGGCA | 60.3 | 0.28 |
| mm4_intergenic_Gm16494|Gm4945_chr17_47033724_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm16494|Gm4945_chr17_47033724_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_exon_Elavl4_chr4_110211633_F | TCGTCGGCAGCGTCGGCTTCTTCTGCCTCAATCCT | 60.0 | 0.26 |
| mm4_exon_Elavl4_chr4_110211633_R | GTCTCGTGGGCTCGGAGGCAAAATATCCACAGGGCA | 59.9 | 0.26 |
| mm0_exon_Nynrin/Gm26751_chr14_55871430_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm0_exon_Nynrin/Gm26751_chr14_55871430_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_Ryr1_chr7_29078196_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intron_Ryr1_chr7_29078196_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Gm8730|Cdh5_chr8_103672674_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm8730|Cdh5_chr8_103672674_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Zfp64_chr2_168911038_F | TCGTCGGCAGCGTCGGGGCAAGTAGCTGAAGATGA | 59.7 | 0.23 |
| mm4_intron_Zfp64_chr2_168911038_R | GTCTCGTGGGCTCGGGTACCTTAGGTGGAGTGCCG | 59.8 | 0.23 |
| mm4_intron_Gm872_chr10_92936953_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Gm872_chr10_92936953_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Igf1r_chr7_68160316_F | TCGTCGGCAGCGTCTGCCCTTTAACCATGCCTGT | 59.8 | 0.22 |
| mm4_intron_Igf1r_chr7_68160316_R | GTCTCGTGGGCTCGGCTGCTCTCCATGAGTGCCAA | 60.0 | 0.22 |
| mm4_intergenic_Tars|Npr3_chr15_11637578_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Tars|Npr3_chr15_11637578_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Rad51ap2|Gm23781_chr12_11649905_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Rad51ap2|Gm23781_chr12_11649905_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Mir446q|Tnik_chr3_28474332_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Mir446q|Tnik_chr3_28474332_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Kcnh8|Efhb_chr17_53042716_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Kcnh8|Efhb_chr17_53042716_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm7488|Tbl1xr1_chr3_21460757_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm7488|Tbl1xr1_chr3_21460757_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Acacb_chr5_114233116_F | TCGTCGGCAGCGTCGTCTGGAAGAACCTGGAGGC | 60.0 | 0.22 |
| mm4_exon_Acacb_chr5_114233116_R | GTCTCGTGGGCTCGGGGAAGGTGATGTCATTGCCG | 59.2 | 0.22 |
| mm4_intergenic_Nlgn2|Tmem256_chr11_69837855_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Nlgn2|Tmem256_chr11_69837855_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Plxna4_chr6_32227655_F | TCGTCGGCAGCGTCCCCCAAGCAATAGGAGAGCC | 60.1 | 0.21 |
| mm4_intron_Plxna4_chr6_32227655_R | GTCTCGTGGGCTCGGCTGCCTACCAGAACAGAACCA | 59.6 | 0.21 |
| mm4_exon_Nfatc1_chr18_80698420_F | TCGTCGGCAGCGTCGTACGTCTTCCACCTCCACG | 60.1 | 0.20 |
| mm4_exon_Nfatc1_chr18_80698420_R | GTCTCGTGGGCTCGGTTCCTGTCCTCTGGCAACAC | 59.8 | 0.20 |
| mm4_intergenic_Gm12439|Gm12438_chr4_48720101_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm12439|Gm12438_chr4_48720101_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm3_intergenic_Gm24280|Rbm26/Gm17066_chr14_105074328_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm3_intergenic_Gm24280|Rbm26/Gm17066_chr14_105074328_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Otol1|Gm23477_chr3_70052789_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Otol1|Gm23477_chr3_70052789_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm13503|Gm13502_chr2_53633264_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm13503|Gm13502_chr2_53633264_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_exon_Lamb3_chr1_193302013_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Lamb3_chr1_193302013_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Dact2|Smoc2_chr17_14222133_F | TCGTCGGCAGCGTCTCCTAATCGCTAGGGGCTCA | 59.8 | 0.18 |
| mm4_intergenic_Dact2|Smoc2_chr17_14222133_R | GTCTCGTGGGCTCGGTGAGTTGGTGGCATGAATGGA | 59.9 | 0.18 |
| mm4_intron_Adap1_chr5_139287251_F | TCGTCGGCAGCGTCGTTCGTTCTGGGCAAGCATG | 60.1 | 0.17 |
| mm4_intron_Adap1_chr5_139287251_R | GTCTCGTGGGCTCGGTGGGAAATGCAGAAGTCCCC | 59.9 | 0.17 |
| mm4_intergenic_Gm22183|mmu-mir-378d_chr10_126354871_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm22183|mmu-mir-378d_chr10_126354871_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_exon_Rftn2_chr1_55201884_F | TCGTCGGCAGCGTCCACAGACTCGGACACTGGTC | 60.0 | 0.17 |
| mm4_exon_Rftn2_chr1_55201884_R | GTCTCGTGGGCTCGGGCCAAACCTCTACTCACCCC | 60.0 | 0.17 |
| mm4_intergenic_Rbpms|Gm9951_chr8_33943147_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Rbpms|Gm9951_chr8_33943147_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm5793|4930468A15Rik_chrX_76560195_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm5793|4930468A15Rik_chrX_76560195_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Kifc3_chr8_95110662_F | TCGTCGGCAGCGTCGAGACAGCCACATCCAGAGG | 59.8 | 0.16 |
| mm4_intron_Kifc3_chr8_95110662_R | GTCTCGTGGGCTCGGCGACTGCGATCAGAACTGGT | 60.1 | 0.16 |
| mm4_intergenic_Pcdh20|Gm25886_chr14_88696093_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Pcdh20|Gm25886_chr14_88696093_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Maf/Gm15655|Dynlrb2_chr8_116497864_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Maf/Gm15655|Dynlrb2_chr8_116497864_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm4929|Fam84a_chr12_13917587_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm4929|Fam84a_chr12_13917587_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm25255|Csmd1_chr8_15641624_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm25255|Csmd1_chr8_15641624_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm23389|Gm23181_chr1_94921769_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm23389|Gm23181_chr1_94921769_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm23276|Dach1_chr14_97723586_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm23276|Dach1_chr14_97723586_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Cmtm6|Cmtm7_chr9_114750399_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Cmtm6|Cmtm7_chr9_114750399_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm2343|Kifap3_chr1_163740504_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm2343|Kifap3_chr1_163740504_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Gm12239_chr11_55797332_F | TCGTCGGCAGCGTCTGCTGTAGGCAGGAGATCCTA | 59.7 | 0.15 |
| mm4_intron_Gm12239_chr11_55797332_R | GTCTCGTGGGCTCGGGCTGGAGCTTCCTGTCTCAT | 59.4 | 0.15 |
| mm4_intron_Rnf40_chr7_127591871_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Rnf40_chr7_127591871_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Mir29b-1/Gm27019|Gm13834_chr6_31068370_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Mir29b-1/Gm27019|Gm13834_chr6_31068370_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Bmper|Npsr1_chr9_23812545_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Bmper|Npsr1_chr9_23812545_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Gm22788|Gm24432_chr18_34064848_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Gm22788|Gm24432_chr18_34064848_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Aldh1a3|Asb7_chr7_66626677_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Aldh1a3|Asb7_chr7_66626677_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Aqp8_chr7_123467310_F | TCGTCGGCAGCGTCGACCAGAGAGGAAACTGCCC | 60.0 | 0.13 |
| mm4_intron_Aqp8_chr7_123467310_R | GTCTCGTGGGCTCGGTTCCCCTGCAAGAAAGACCC | 59.8 | 0.13 |
| mm4_intron_Lama3_chr18_12359153_F | TCGTCGGCAGCGTCCCACATCACCTTGGAGCTGT | 59.9 | 0.13 |
| mm4_intron_Lama3_chr18_12359153_R | GTCTCGTGGGCTCGGAGCTGCCACAAGAAAGTCCA | 59.8 | 0.13 |
| mm3_intergenic_Gm13750|Gm25748_chr1_64174876_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intergenic_Gm13750|Gm25748_chr1_64174876_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Padi1|4930515B02Rik_chr4_140871159_F | TCGTCGGCAGCGTCCTCCAATGTCCTGGGAGCTC | 59.8 | 0.13 |
| mm4_intergenic_Padi1|4930515B02Rik_chr4_140871159_R | GTCTCGTGGGCTCGGTGCCTCTGTGTTTCCGAGAC | 59.9 | 0.13 |
| mm4_intergenic_Abhd8|Mrpl34_chr8_71463790_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Abhd8|Mrpl34_chr8_71463790_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_9330159F19Rik|Echdc1_chr10_29243563_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_9330159F19Rik|Echdc1_chr10_29243563_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Tnfaip2_chr12_111443802_F | TCGTCGGCAGCGTCGGAGATGGTGTGGGAAAGGG | 60.0 | 0.12 |
| mm4_intron_Tnfaip2_chr12_111443802_R | GTCTCGTGGGCTCGGGTGATCCAGGAACAGCTCCC | 60.1 | 0.12 |
| mm4_intergenic_Suclg2|Fam19a1_chr6_96017858_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Suclg2|Fam19a1_chr6_96017858_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Tle3|Rplp1_chr9_61783371_F | TCGTCGGCAGCGTCAGACACTCCAGGGTGCCTAT | 59.9 | 0.12 |
| mm4_intergenic_Tle3|Rplp1_chr9_61783371_R | GTCTCGTGGGCTCGGTGGGACGAGAAGATGCCAAA | 59.3 | 0.12 |
| mm4_intergenic_Gm27025|Gm25700_chr13_86264331_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm27025|Gm25700_chr13_86264331_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Gm23829|Gm5974_chr1_48166818_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_intergenic_Gm23829|Gm5974_chr1_48166818_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_CT030233.1|Gm20675_chr14_67189162_F | TCGTCGGCAGCGTCCGCCTAGGCTCTCTCTTCAC | 59.6 | 0.10 |
| mm4_intergenic_CT030233.1|Gm20675_chr14_67189162_R | GTCTCGTGGGCTCGGGCCCAGGTTCAAATTGCCTT | 59.3 | 0.10 |
| mm2_intergenic_Isg20|Gm26633_chr7_78930718_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm2_intergenic_Isg20|Gm26633_chr7_78930718_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Vmn1r62|Vmn1r63_chr7_5788764_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Vmn1r62|Vmn1r63_chr7_5788764_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_VMN1R62|VMN1R63_chr7_GL456219_random_135298_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_VMN1R62|VMN1R63_chr7_GL456219_random_135298_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Spata19|Opcml_chr9_27684841_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Spata19|Opcml_chr9_27684841_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm22815|Cntn5_chr9_9403422_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm22815|Cntn5_chr9_9403422_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm14894|Gm5942_chrX_114679117_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm14894|Gm5942_chrX_114679117_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm13916|Gm13915_chr2_108489609_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm13916|Gm13915_chr2_108489609_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Fam173b|Tas2r119_chr15_31894006_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Fam173b|Tas2r119_chr15_31894006_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Luzp1_chr4_136504439_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Luzp1_chr4_136504439_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Fam163b_chr2_27118673_F | TCGTCGGCAGCGTCCAGGGACCCTTCACATTCCC | 60.0 | 0.09 |
| mm4_intron_Fam163b_chr2_27118673_R | GTCTCGTGGGCTCGGCGAGAGCAGAGCAGTCGATT | 59.9 | 0.09 |
| mm3_exon_Zbtb39/Gpr182_chr10_127742016_F | TCGTCGGCAGCGTCCAGCCAGTGTGTCACTCTCA | 59.6 | 0.09 |
| mm3_exon_Zbtb39/Gpr182_chr10_127742016_R | GTCTCGTGGGCTCGGTGCATCAGTAGGCAGCACAT | 59.7 | 0.09 |
| mm3_intergenic_Ttc27|Ltbp1_chr17_74989877_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Ttc27|Ltbp1_chr17_74989877_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Shcbp1|Gm9457_chr8_4808983_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Shcbp1|Gm9457_chr8_4808983_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_1700122O11Rik|1700067P10Rik_chr17_48038518_F | TCGTCGGCAGCGTCCCATTTCCCCAGCTCCTCTG | 60.1 | 0.08 |
| mm4_intergenic_1700122O11Rik|1700067P10Rik_chr17_48038518_R | GTCTCGTGGGCTCGGTCAGGCATTGCTGGTGCTAC | 60.6 | 0.08 |
| mm4_intron_Dgki_chr6_37150720_F | TCGTCGGCAGCGTCCAGGCAACACATTAGCTCTGC | 59.8 | 0.08 |
| mm4_intron_Dgki_chr6_37150720_R | GTCTCGTGGGCTCGGAGGAGCCCAAACTGAGGTTG | 59.8 | 0.08 |
| mm4_intron_Nhsl1_chr10_18392271_F | TCGTCGGCAGCGTCATGAGAGCCAGCAGAGGAGA | 60.0 | 0.08 |
| mm4_intron_Nhsl1_chr10_18392271_R | GTCTCGTGGGCTCGGCCTGCAACAGAAGTGGGAGT | 59.8 | 0.08 |
| mm4_intergenic_Gm25693|Gm12129_chr11_38059074_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm25693|Gm12129_chr11_38059074_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Nfrkb_chr9_31386253_F | TCGTCGGCAGCGTCGACGAACCCCGGGTGAGA | 60.9 | 0.07 |
| mm4_exon_Nfrkb_chr9_31386253_R | GTCTCGTGGGCTCGGTTCTCCCTTTCTCCCCGCTT | 60.8 | 0.07 |
| mm4_intron_Tdp1_chr12_99938015_F | TCGTCGGCAGCGTCATCACTGCCAGCTCATGTCC | 60.1 | 0.07 |
| mm4_intron_Tdp1_chr12_99938015_R | GTCTCGTGGGCTCGGAGAACGAGGACCACAGCTTG | 59.9 | 0.07 |
| mm4_intron_Tspan18_chr2_93256675_F | TCGTCGGCAGCGTCTAGGACACCTAGCGCTTCCT | 60.0 | 0.07 |
| mm4_intron_Tspan18_chr2_93256675_R | GTCTCGTGGGCTCGGCTCCTGTCCACCCAGTTGTC | 59.9 | 0.07 |
| mm4_intergenic_Gm13415/Pax8|Pax8_chr2_24443218_F | TCGTCGGCAGCGTCTTTGAACATGGACCTGGCCA | 59.8 | 0.07 |
| mm4_intergenic_Gm13415/Pax8|Pax8_chr2_24443218_R | GTCTCGTGGGCTCGGGGCCATGTCTCAGTTCCACA | 59.9 | 0.07 |
| mm4_intergenic_Asb1|Twist2_chr1_91755153_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Asb1|Twist2_chr1_91755153_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Mep1a|Ankrd66_chr17_43519025_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Mep1a|Ankrd66_chr17_43519025_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Rpl21-ps13|mmu-mir-6401_chr7_139736126_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Rpl21-ps13|mmu-mir-6401_chr7_139736126_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Zfp385b_chr2_77443079_F | TCGTCGGCAGCGTCCCAAAACTGGCCTCACTGGA | 60.1 | 0.05 |
| mm4_intron_Zfp385b_chr2_77443079_R | GTCTCGTGGGCTCGGAAGTGCCCAGGTGTAGTTGG | 59.8 | 0.05 |
| mm4_intron_Hal_chr10_93509723_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Hal_chr10_93509723_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Synj1|Synj1/4930404I05Rik_chr16_91010663_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Synj1|Synj1/4930404I05Rik_chr16_91010663_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Zfp800_chr6_28261723_F | TCGTCGGCAGCGTCGCTCCACCTGCAACGGTC | 61.0 | 0.04 |
| mm4_exon_Zfp800_chr6_28261723_R | GTCTCGTGGGCTCGGCACGAGAGAACGGGACTGAC | 60.1 | 0.04 |
| mm3_exon_Stab2_chr10_86841452_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_exon_Stab2_chr10_86841452_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Fndc3b|Tmem212_chr3_27782243_F | TCGTCGGCAGCGTCAGCCAAGTACGGTGAACTGG | 59.9 | 0.03 |
| mm3_intergenic_Fndc3b|Tmem212_chr3_27782243_R | GTCTCGTGGGCTCGGGGAGGGTAAGGGCTCTGTCA | 60.6 | 0.03 |
| mm4_intergenic_Gm8793|Nkain2_chr10_31769799_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm8793|Nkain2_chr10_31769799_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Sh3bp4_chr1_89137218_F | TCGTCGGCAGCGTCGCTCTCTGTTCCTTGTGCCA | 60.2 | 0.03 |
| mm4_intron_Sh3bp4_chr1_89137218_R | GTCTCGTGGGCTCGGCCTCAGACCGTGCAGTACAT | 59.4 | 0.03 |
| mm4_intron_Cdh13_chr8_119313457_F | TCGTCGGCAGCGTCCTGTCACACGCAACCTCTCT | 59.9 | 0.03 |
| mm4_intron_Cdh13_chr8_119313457_R | GTCTCGTGGGCTCGGTGCTGGGAAGGAAGTGTGTG | 60.1 | 0.03 |
| mm4_intron_Dgat2_chr7_99176681_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Dgat2_chr7_99176681_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Tmem163_chr1_127677900_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Tmem163_chr1_127677900_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Pdzd2|Gm24302_chr15_12638566_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Pdzd2|Gm24302_chr15_12638566_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_C030017K20Rik_chr4_155465946_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_C030017K20Rik_chr4_155465946_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Olig3|Ifngr1_chr10_19462145_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Olig3|Ifngr1_chr10_19462145_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Irx1|Rpl9-ps4_chr13_72341467_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Irx1|Rpl9-ps4_chr13_72341467_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Slco5a1_chr1_12948946_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Slco5a1_chr1_12948946_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ncor2_chr5_125044178_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ncor2_chr5_125044178_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Hivep3_chr4_120035909_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Hivep3_chr4_120035909_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Zfy2|Gm22119_chrY_2371505_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Zfy2|Gm22119_chrY_2371505_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Zfp335|Gm11458/Zfp335_chr2_164911238_F | TCGTCGGCAGCGTCCGGGGTCAGTGGTTCACTC | 60.0 | 0.00 |
| mm4_intergenic_Zfp335|Gm11458/Zfp335_chr2_164911238_R | GTCTCGTGGGCTCGGGACAGCCCCGAGACACCAG | 62.3 | 0.00 |
| mm4_intergenic_Gm22202|Tmem106c_chr15_97949184_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22202|Tmem106c_chr15_97949184_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Asmt_chrX_170676326_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Asmt_chrX_170676326_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313821 |
AGGGAGCCTGGGATTAGGAGCTTACTTGGGGGTTTTCCCCCTCCCCCCCTCTGGAGAGTCCGGGGATGGAGAGCCGAAAG GACATG |
| mm4_intron_Pitpnb_chr5_111380806 | AGTTGTGCCAGCACTTCAGTACAGAGACCTCCCCTCTGGAGAGTCGGTATCCTGACCACTTCTCTCAAGCA |
| mm4_intron_Ctnnd2_chr15_30302354 |
GAACGGACCTGCTTCACTGACCTCTGACCTGGAAGAGGAAGCTGGGAGCTGAACTGTCCCTTGCTCTGCTCAACACTCTC CAGAGGGGTGGATGCTTTCTTGTTTCAGAACCGCT |
| mm4_intergenic_BC017158|Rgs10_chr7_128307285 |
TGGACATCTCTCCCACCTGGCCCCCTCTCTGGTGAGTCCTGGATATTTTTCTTTTCTCCAAGTTCTCTCTTCTCTGGAAC ACCCCAAGGT |
| mm4_intron_Ppa1_chr10_61653066 |
CCATAAGACTCCGCCGTCTCAGAGAACCCTGAGAAATGATGTTTTGTAGGACAGCCAAGGGTCATCTCCATCCCCCCTTC TGGAGTGTCCCGAGGCAGCTGTGGTAACCCTTGGCTGAC |
| mm4_intergenic_Gm12066|Gm12068_chr11_24349134 |
GCGTATCAGAGGCTGAGTGTGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCCTGGGA TCTTCCCCAGAGTCTCCAGAAAGGAGGCCACAGAGAGGGTGCCTGCTAATGACA |
| mm3_intergenic_Rora|F830001A07Rik_chr9_68823588 |
TATCGTGGTGGAGCTGATGCTTGAAAAACACATGTTTACCCAAAGTCTGGTGAGTTCCATGCCTCTGGAGAGTCCTGGGT TTTGTTTCCTTGCGGGTCAGGCATGGTCAGTCAT |
| mm4_intron_Atg2b_chr12_105642191 |
ACCATTAGCTACCAACAAACCCAAATAAACATAAATATAGCTCAGGAGCAGACAGAGAACCAGGACCCTGCAGAGGGGAG GGGTTCCTTAAAACCCTGCTGG |
| mm4_intergenic_Syce1l|Adamts18_chr8_113688097 |
GATAGACAGGACAGAGCGGCAGCACATTCATCTTGCCTCAATCCTATTTCATGTCTTCCGGACTCTGTAGAGGGGCGGTA GGTGGGAACAATTGATCTATTGAGAATTGCAGGCTGTATCTCCCTCT |
| mm3_intron_Plekha7_chr7_116288629 |
GGGATGACTACCTGGGGACTCAGTCCACCCCTCTGCTGAGTCCTGGGAGGAGGGACGGGCAGGAGGTAGTCCTCAGTAGT GAGAGGAAGTTGCTGGC |
| mm4_intergenic_Peli2|Gm23881_chr14_48361056 |
TCTTTCCACGGTGTGCTGTTCACATGGGACTCTGTGTGGAAGACAATGGCCCATTCTTTTCTCTCAAGTTTAGCTTTCCA GGAGGCCCCCTCTCTGGAGAGCGCTGGGTCCTTGTGGTGCCTGGGGTTCGAGAAATG |
| mm4_exon_Elavl4_chr4_110211633 |
GGCTTCTTCTGCCTCAATCCTCTTATCAAAGCGGATGAATCCCACCCCTCTAGAGACCCCTGGGGAAAGAAAAAGAACAT TTGTAAAGAGTGAACAAATGTAATCACTGGGAAGTGCCCTGTGGATATTTTGCCT |
| mm4_intron_Zfp64_chr2_168911038 |
GGGGCAAGTAGCTGAAGATGACGGAGGAATGTGTAGACATATAAAGGTATCCCCCTTCCCCGGGCTCTTCAGAAGTGGGG GATCTGCCAGTAGGAAGGCGGCACTCCACCTAAGGTAC |
| mm4_intron_Igf1r_chr7_68160316 |
TGCCCTTTAACCATGCCTGTGTGCCCCTCCTCTGGAGTGGCGGGGGAGGTCCCCTCCTTTCCCCCCATGGTGCTGTAATT GGAAATTTGGTTACTGCACTAAATTTTAAGTTTTGGCACTCATGGAGAGCAG |
| mm4_exon_Acacb_chr5_114233116 |
GTCTGGAAGAACCTGGAGGCATTTCAATTAGCCTTCATCTCATTCCCAGGTGGGCATGGTGGCCTTCAAAATGAGGTTCA AGACCCCGGAGTATCCAGAAGGCCGGGACGCCGTTGTCATCGGCAATGACATCACCTTCC |
| mm4_intron_Plxna4_chr6_32227655 |
CCCCAAGCAATAGGAGAGCCAAGTATGGAGGCATGCCTTCTGTCTGGCCTCTCCTCTTGAGAGTCCTGAGATGGTTCTGT TCTGGTAGGCAG |
| mm4_exon_Nfatc1_chr18_80698420 |
GTACGTCTTCCACCTCCACGTCGTGGAAAAACTGGCCGCTGCCATGGTGTAGGCCCAGGTAGGAGGTGATCTCGATTCTC GGACTCTCCAGAGTCGGGGCCCCGTTGGGTCTGGTGTTGCCAGAGGACAGGAA |
| mm4_intergenic_Dact2|Smoc2_chr17_14222133 |
TCCTAATCGCTAGGGGCTCATGGTGCCCCGTGTACTCTCCAGAGAGGTGGTTTATTCTGTGACGATTACATTACACCTCA ATAAGGCTGCTGGAAATTGAAAATGCAAACTGGGTTATCCATTCATGCCACCAACTCA |
| mm4_intron_Adap1_chr5_139287251 |
GTTCGTTCTGGGCAAGCATGGGGCCACTCCTCTGAAGAGTCCCGGCCTCACCTCTTTTGAGGCCCCACATTTCCCCTTTC TCCATCTGAGGGGACTTCTGCATTTCCCA |
| mm4_exon_Rftn2_chr1_55201884 |
CACAGACTCGGACACTGGTCAGCCTCCCCTCTGCAGTGTCCTCGGAAAGTCCTAGTGACACACACTCCAGTGTCCAGACC GCAGGCTGAGGGGGGTGAGTAGAGGTTTGGC |
| mm4_intron_Kifc3_chr8_95110662 |
GAGACAGCCACATCCAGAGGTGGAAGAGTGACCACGTCTTGACACTCANNNNNNNNNNNNNNNNNNNNNAGGACGGTCCT GGGGTCCTCACCAGTTCTGATCGCAGTCG |
| mm4_intron_Gm12239_chr11_55797332 |
TGCTGTAGGCAGGAGATCCTAGTGAACAAACACATTATTAATTGGGATGCTCCAAGCAATGCCCCCACTGAGGAGGAGTG CCAGCCCTCTGGAGAGGTCAGGGGGCAGCATTGTTATGAGACAGGAAGCTCCAGC |
| mm4_intron_Aqp8_chr7_123467310 |
GACCAGAGAGGAAACTGCCCACCCACTGCCTGAGAGGACTCAGCTCAGGAAACCACCCGTCTAGAGAGTTCTGGGCTTAG AGATTTGTAATGGAGAGCTGGGTCTTTCTTGCAGGGGAA |
| mm4_intron_Lama3_chr18_12359153 |
CCACATCACCTTGGAGCTGTGTCTATTCAAATCTCCTTCCATGTTAGCCCCGGAGTTTCCTGAGGGCGGGACTGTTTCTT CCTGCTCCTGGACTTTCTTGTGGCAGCT |
| mm4_intergenic_Padi1|4930515B02Rik_chr4_140871159 |
CTCCAATGTCCTGGGAGCTCCTTGCGGGCTGAATCCCAACCTTGTAATTAAGTGTAGGGCTGGGCACTGCTTCCTGGACG CTCCACAGGGGGGGCAGTCTCGGAAACACAGAGGCA |
| mm4_intron_Tnfaip2_chr12_111443802 |
GGAGATGGTGTGGGAAAGGGCCCTTAAAGTGTGTTGTGTTTGGGCAAGCACCTCCCCTCCGCAGTTTCCGGGGTTCTCCT TCGTGATGGTGGGTCTTCCCACTTGCCTTACCGGGAGCTGTTCCTGGATCAC |
| mm4_intergenic_Tle3|Rplp1_chr9_61783371 |
AGACACTCCAGGGTGCCTATGTTAGGTACAGCTATAAAGCACCCAGACCCCAGCTCTGGAGAGGCTGGGGGTGGGTGGAG GGTGATGTCTGAATTTGGCATCTTCTCGTCCCA |
| mm4_intergenic_CT030233.1|Gm20675_chr14_67189162 |
CGCCTAGGCTCTCTCTTCACTTCCTGCCTCCTAACTCTCAAGAGGGGCGGAGCTGCTTTCTAGAAGGCAATTTGAACCTG GGC |
| mm4_intron_Fam163b_chr2_27118673 |
CAGGGACCCTTCACATTCCCGGGCATGCTGCCTAACAGTTCTGCCCCCCTCGGCCTCTCCAGAGGCTGGGGCCAGCTGGC CTTGCTAGGGTGAACCCAAACAGTCACTGGTGCCACTAGAATCGACTGCTCTGCTCTCG |
| mm3_exon_Zbtb39/Gpr182_chr10_127742016 |
CAGCCAGTGTGTCACTCTCAGTTGTCCCTCAGTAGATCCCACCCACCCCCTTGGAGAGTCCCGGGGGAGTGGGGAACACT TCGGTCCTGATAGAAACTATGTGCTGCCTACTGATGCA |
| mm4_intergenic_1700122O11Rik|1700067P10Rik_chr17_48038518 |
CCATTTCCCCAGCTCCTCTGTGGAATGGATGAGATACCACAGAGCCCACAGTTCAGCTGGGGACCCCTCTCCTCTGAAGA GTCAGGTGCTGCTGGGATTAAAGGTAGCACCAGCAATGCCTGA |
| mm4_intron_Dgki_chr6_37150720 |
CAGGCAACACATTAGCTCTGCATAATTCCCCAGACTCATCAGACGGGTGGAATTTTTGAAAGAAGATGGTCCAGTCATGG TTCCCTTTCCTCATGTTCTCCAAGATAGGTAGTTAACAACCTCAGTTTGGGCTCCT |
| mm4_intron_Nhsl1_chr10_18392271 |
ATGAGAGCCAGCAGAGGAGAGCAAAAGCGGAGAGGGTAGAGTGGGCCCAGTACTCTCCTCAGGGGAGGAGGGAGAATCAA GTCAAGACTCCCACTTCTGTTGCAGG |
| mm4_exon_Nfrkb_chr9_31386253 |
GACGAACCCCGGGTGAGACCCGCGGACTCTGCTGAGGTGAGGGCGGGCCCAGGCGTCGGGTTTGGTGGGTGCCGGGGGAA GGGGAGAAGCGGGGAGAAAGGGAGAA |
| mm4_intron_Tdp1_chr12_99938015 |
ATCACTGCCAGCTCATGTCCACGATCACCCAGGACCTCCCCTATGGAGGGCCCTGGGGAGGAACGAGAAACAAGCTGTGG TCCTCGTTCT |
| mm4_intron_Tspan18_chr2_93256675 |
TAGGACACCTAGCGCTTCCTGGTCCGGATCATGAAGACTGTTCCATCAGTATCTCCAGAGTGGCCCAGGCTCTCGAGAGG GGAGGCAAAGGGCCACGGGACAACTGGGTGGACAGGAG |
| mm4_intergenic_Gm13415/Pax8|Pax8_chr2_24443218 | TTTGAACATGGACCTGGCCAGAGCCTCTGTCCCCCCTGAGTCTCCTGAGGAGAGGTGTGGAACTGAGACATGGCC |
| mm4_intron_Zfp385b_chr2_77443079 |
CCAAAACTGGCCTCACTGGACACTGCCAAGGCTGACTCCTGGCACTCTCCAGATGGGAGGATCCAACTACACCTGGGCAC TT |
| mm4_exon_Zfp800_chr6_28261723 |
GCTCCACCTGCAACGGTCCCCCGGGCTTTGGAGAGGGGCGGGGAGCCGCGCGGGTCCCCCACCTGGGGCCTTGCGGGTAG CAGATGCTTCGGGAAACTTTATGGAAGTCAGTCCCGTTCTCTCGTG |
| mm3_intergenic_Fndc3b|Tmem212_chr3_27782243 |
AGCCAAGTACGGTGAACTGGGCCTCCCTTCAGTGTGGAAGTGCTTGTGACGCTGGCATAATGGATGCTGTATAAGAAGTC TGCTGAGTTCTCCCCTCTGGAATCTCCGGGGCGCCTGACAGAGCCCTTACCCTCC |
| mm4_intron_Sh3bp4_chr1_89137218 |
GCTCTCTGTTCCTTGTGCCAAGCCTCCCACGGCCACTCCTCCAACAGGACCCGCCACTCTGGACAGACAGGGGCTGTTTT CTTCCTGAGTCCTGGAAGTGCCAATGTACTGCACGGTCTGAGG |
| mm4_intron_Cdh13_chr8_119313457 |
CTGTCACACGCAACCTCTCTTTCCCCCTGCCTTTCCACAGGGGTGGGCAGAATTGAAATGTGGCCCACCACTGACCAGCG ACCTTACTAATTACAAAGCACTTCAGAGTCCTGCTATCCCACACACTTCCTTCCCAGCA |
| mm4_intergenic_Zfp335|Gm11458/Zfp335_chr2_164911238 |
CGGGGTCAGTGGTTCACTCCCCCTCCCCGGACTCCCCTGCGGAGGGGGCTGACAGCGACGGTCGCGGGGCCTGGTGTCTC GGGGCTGTC |