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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313818_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313818_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm3_intergenic_Gm16063|Gm2301_chr5_119626555_F | TCGTCGGCAGCGTCCCACCTCCCTAGCCCAAAAT | 59.3 | 0.75 |
| mm3_intergenic_Gm16063|Gm2301_chr5_119626555_R | GTCTCGTGGGCTCGGTCTGCAGAAGGCTATCAGCG | 59.8 | 0.75 |
| mm4_exon_Gm16287_chr4_139175852_F | TCGTCGGCAGCGTCCTGGGGCTTCGTTCTGTGAT | 60.0 | 0.68 |
| mm4_exon_Gm16287_chr4_139175852_R | GTCTCGTGGGCTCGGCAAGGCAATGTTGTATGGGGT | 58.8 | 0.68 |
| mm4_intergenic_Pgap1|Ankrd44_chr1_54615487_F | Primer3: not found at this Tm | N.d. | 0.67 |
| mm4_intergenic_Pgap1|Ankrd44_chr1_54615487_R | Primer3: not found at this Tm | N.d. | 0.67 |
| mm3_intron_Plag1_chr4_3936878_F | TCGTCGGCAGCGTCCCAGAAGGTTCGCCAGTCTT | 59.9 | 0.62 |
| mm3_intron_Plag1_chr4_3936878_R | GTCTCGTGGGCTCGGCGGGTTTTGTTAGTGGCTCC | 59.1 | 0.62 |
| mm3_intron_Ccdc30_chr4_119385353_F | TCGTCGGCAGCGTCTGCAAATCGCCAATAGTCGC | 59.6 | 0.58 |
| mm3_intron_Ccdc30_chr4_119385353_R | GTCTCGTGGGCTCGGAGTCTTTCCCTCCCTCACCG | 60.9 | 0.58 |
| mm4_intergenic_Gm24696|Myc_chr15_61984262_F | TCGTCGGCAGCGTCTTCTAGGGTCTCTGCAGGCT | 59.9 | 0.57 |
| mm4_intergenic_Gm24696|Myc_chr15_61984262_R | GTCTCGTGGGCTCGGTGGGGTGGGGAAAATCAAGG | 59.8 | 0.57 |
| mm4_intergenic_4930526D03Rik|Oprl1_chr2_181708878_F | TCGTCGGCAGCGTCATTTTCTCTCCCGGCAGCTC | 60.1 | 0.56 |
| mm4_intergenic_4930526D03Rik|Oprl1_chr2_181708878_R | GTCTCGTGGGCTCGGCTAAGACCCAACCAGCAGCA | 59.9 | 0.56 |
| mm4_intergenic_Gm26580/Kcnq5|Rims1_chr1_22043337_F | TCGTCGGCAGCGTCGCAAGAACACTGGGGAGGAA | 59.8 | 0.56 |
| mm4_intergenic_Gm26580/Kcnq5|Rims1_chr1_22043337_R | GTCTCGTGGGCTCGGTGTCCATCTCCCTCTGGCAT | 60.3 | 0.56 |
| mm4_intergenic_Thumpd2|Slc8a1_chr17_81178734_F | TCGTCGGCAGCGTCGGAGGGCCCAAATGCTTAGT | 60.0 | 0.56 |
| mm4_intergenic_Thumpd2|Slc8a1_chr17_81178734_R | GTCTCGTGGGCTCGGCCCACACATGCCCAACACTA | 60.2 | 0.56 |
| mm3_intergenic_Ercc4|Mkl2_chr16_13208211_F | Primer3: not found at this Tm | N.d. | 0.56 |
| mm3_intergenic_Ercc4|Mkl2_chr16_13208211_R | Primer3: not found at this Tm | N.d. | 0.56 |
| mm4_intron_Map4k3_chr17_80646217_F | TCGTCGGCAGCGTCCACAAGCTGGGACCCCATAC | 60.3 | 0.56 |
| mm4_intron_Map4k3_chr17_80646217_R | GTCTCGTGGGCTCGGATAAAACAGACCGCCGCCAT | 60.3 | 0.56 |
| mm4_intron_Llgl2_chr11_115855262_F | TCGTCGGCAGCGTCGGCTCAGCAATGGAGAAGGT | 60.0 | 0.54 |
| mm4_intron_Llgl2_chr11_115855262_R | GTCTCGTGGGCTCGGGGAGGGGTGGCAGTTCTTTT | 60.1 | 0.54 |
| mm4_intron_Mctp2_chr7_72203189_F | TCGTCGGCAGCGTCGCCAATGGTGTAGAGCTGCT | 60.3 | 0.53 |
| mm4_intron_Mctp2_chr7_72203189_R | GTCTCGTGGGCTCGGAGAACAAACAAATGCCTGGGC | 59.9 | 0.53 |
| mm4_intergenic_RP23-417D20.1|RP24-129O14.1_chr9_80971705_F | TCGTCGGCAGCGTCATGGGGTGTCCTGGAGAGG | 60.3 | 0.53 |
| mm4_intergenic_RP23-417D20.1|RP24-129O14.1_chr9_80971705_R | GTCTCGTGGGCTCGGATTTCCATGACCCCGATGCC | 60.4 | 0.53 |
| mm4_exon_Pnkd_chr1_74286136_F | TCGTCGGCAGCGTCTCTGAAATGCGGGTGGAGAG | 59.7 | 0.52 |
| mm4_exon_Pnkd_chr1_74286136_R | GTCTCGTGGGCTCGGTGCTCCACAGAAAAGCCACT | 59.8 | 0.52 |
| mm4_intergenic_Atp4b|Grk1_chr8_13403279_F | TCGTCGGCAGCGTCACAACTGTATGTGCTCTGCCA | 59.9 | 0.52 |
| mm4_intergenic_Atp4b|Grk1_chr8_13403279_R | GTCTCGTGGGCTCGGAGGGGCTGAGGAGAATTTGC | 60.0 | 0.52 |
| mm4_exon_B4galt2/Ccdc24_chr4_117872051_F | TCGTCGGCAGCGTCCGGAGGCCTTGGAGTAACTG | 60.1 | 0.50 |
| mm4_exon_B4galt2/Ccdc24_chr4_117872051_R | GTCTCGTGGGCTCGGCTCTGACCCTCCCTCCCTAC | 60.1 | 0.50 |
| mm4_intergenic_Clstn3|C1rl_chr6_124478789_F | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_Clstn3|C1rl_chr6_124478789_R | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intron_Camk1d_chr2_5561641_F | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intron_Camk1d_chr2_5561641_R | Primer3: not found at this Tm | N.d. | 0.46 |
| mm4_intergenic_Gsx2|Pdgfra_chr5_75088897_F | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intergenic_Gsx2|Pdgfra_chr5_75088897_R | Primer3: not found at this Tm | N.d. | 0.45 |
| mm4_intron_Rbfox3_chr11_118732586_F | TCGTCGGCAGCGTCATGAAGGAAGGCCACACAGG | 59.9 | 0.45 |
| mm4_intron_Rbfox3_chr11_118732586_R | GTCTCGTGGGCTCGGTGCAGGAGCTCAGAAACCAG | 59.9 | 0.45 |
| mm4_intergenic_Gm25781|Ipo5_chr14_120848705_F | TCGTCGGCAGCGTCAAACACTGCCACCCTTTAAAAG | 57.5 | 0.43 |
| mm4_intergenic_Gm25781|Ipo5_chr14_120848705_R | GTCTCGTGGGCTCGGTGACTCGCTGCTCTTTCTGC | 60.6 | 0.43 |
| mm4_intergenic_Frem2|Gm24851_chr3_53691394_F | TCGTCGGCAGCGTCGCTATCTGAAGCAGCCACTGA | 60.1 | 0.42 |
| mm4_intergenic_Frem2|Gm24851_chr3_53691394_R | GTCTCGTGGGCTCGGCAGCAAAGGCCACAAACTCC | 59.9 | 0.42 |
| mm4_exon_BC068157_chr8_4213642_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_exon_BC068157_chr8_4213642_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intergenic_Gm15387|Bai1_chr15_74483491_F | TCGTCGGCAGCGTCAAACCCAGGAAGCATGCAGA | 59.8 | 0.41 |
| mm4_intergenic_Gm15387|Bai1_chr15_74483491_R | GTCTCGTGGGCTCGGAAGTGGTCGCCATCACTGTC | 60.3 | 0.41 |
| mm4_intergenic_Gm21614|Gm23249_chr12_91999069_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm21614|Gm23249_chr12_91999069_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intron_Susd4_chr1_182834708_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intron_Susd4_chr1_182834708_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_exon_Prkcd_chr14_30595733_F | TCGTCGGCAGCGTCTGATGGCAAAGGGAAGGCAA | 60.1 | 0.39 |
| mm4_exon_Prkcd_chr14_30595733_R | GTCTCGTGGGCTCGGGACTGGCTGATTTCTGCTGC | 59.5 | 0.39 |
| mm4_intron_Map1b_chr13_99465616_F | TCGTCGGCAGCGTCTCTTTTCCAGCATGTAAACGCA | 59.1 | 0.38 |
| mm4_intron_Map1b_chr13_99465616_R | GTCTCGTGGGCTCGGGTGGACGGCCCTTTTCTCTT | 60.2 | 0.38 |
| mm4_intergenic_Gm12700|Cachd1_chr4_100642133_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Gm12700|Cachd1_chr4_100642133_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Gm25684|Gm9966_chr7_95867953_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Gm25684|Gm9966_chr7_95867953_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intron_Prkca_chr11_108032698_F | TCGTCGGCAGCGTCACGAGGCCATCAACAGTGAG | 60.0 | 0.36 |
| mm4_intron_Prkca_chr11_108032698_R | GTCTCGTGGGCTCGGCCTGGATGGTTACTCGGCTC | 59.8 | 0.36 |
| mm4_intergenic_Tcf7|A630014C17Rik_chr11_52283453_F | TCGTCGGCAGCGTCGTCGGAACATCAAAGGCACC | 59.4 | 0.36 |
| mm4_intergenic_Tcf7|A630014C17Rik_chr11_52283453_R | GTCTCGTGGGCTCGGTTATTCCCAGTGGGCCTGTC | 59.3 | 0.36 |
| mm4_intergenic_Atp1a3|Grik5_chr7_25008251_F | TCGTCGGCAGCGTCGTGCATAACGCTCCCAATGC | 60.2 | 0.35 |
| mm4_intergenic_Atp1a3|Grik5_chr7_25008251_R | GTCTCGTGGGCTCGGTCCTCCATCCCTGTGACCTT | 59.8 | 0.35 |
| mm4_intergenic_Gm2348|Slc1a3_chr15_8571523_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Gm2348|Slc1a3_chr15_8571523_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intergenic_Sorbs2|Gm25309_chr8_45841719_F | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intergenic_Sorbs2|Gm25309_chr8_45841719_R | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intergenic_PVT1_3|Ndufa4_chr6_11485692_F | TCGTCGGCAGCGTCATGCACGGGACCAGAACATT | 59.9 | 0.34 |
| mm4_intergenic_PVT1_3|Ndufa4_chr6_11485692_R | GTCTCGTGGGCTCGGAACCTGGAAATGAGGTGCCA | 59.5 | 0.34 |
| mm4_intergenic_Gm10293|Gm22798_chr3_52615206_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm10293|Gm22798_chr3_52615206_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intron_Csmd2_chr4_128299765_F | TCGTCGGCAGCGTCAGTGCAATTTCTACACCAATTGT | 57.2 | 0.33 |
| mm4_intron_Csmd2_chr4_128299765_R | GTCTCGTGGGCTCGGTAGTAACAGTGAGGGCCACC | 58.7 | 0.33 |
| mm4_intergenic_Gpr158|Gm13337_chr2_21961447_F | TCGTCGGCAGCGTCGAGTCAGCCCAGAAACCACA | 59.8 | 0.31 |
| mm4_intergenic_Gpr158|Gm13337_chr2_21961447_R | GTCTCGTGGGCTCGGTGCAGAAGGGATTGCCTGAA | 59.5 | 0.31 |
| mm4_exon_Anks6_chr4_47049392_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_exon_Anks6_chr4_47049392_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Rhobtb1|Cdk1_chr10_69300423_F | TCGTCGGCAGCGTCACAGAAGAGAGTGGGGAAAGC | 59.6 | 0.29 |
| mm4_intergenic_Rhobtb1|Cdk1_chr10_69300423_R | GTCTCGTGGGCTCGGTGCTATCCCCAGGGTTCAGA | 59.9 | 0.29 |
| mm4_intron_Ano10_chr9_122265209_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Ano10_chr9_122265209_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Kcnk5|Gm24912_chr14_20193135_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Kcnk5|Gm24912_chr14_20193135_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Lce3f|Crct1_chr3_92999996_F | TCGTCGGCAGCGTCGGACAGAAATTTGGGAGCTGG | 59.1 | 0.27 |
| mm4_intergenic_Lce3f|Crct1_chr3_92999996_R | GTCTCGTGGGCTCGGCCTGAGACAACCTGGAAGCA | 59.6 | 0.27 |
| mm4_intergenic_Gm23867|Gm15204_chrX_162333517_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm23867|Gm15204_chrX_162333517_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm5899|Gm23884_chr7_94327357_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm5899|Gm23884_chr7_94327357_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Camta1|4930589P08Rik_chr4_151349014_F | TCGTCGGCAGCGTCCGAAAGGACAGCCACTTCCT | 59.9 | 0.27 |
| mm4_intergenic_Camta1|4930589P08Rik_chr4_151349014_R | GTCTCGTGGGCTCGGGAGACATCCTATGCCTCGACA | 59.0 | 0.27 |
| mm4_intron_Epb4.1l1_chr2_156509371_F | TCGTCGGCAGCGTCGATGGAGGTATGGCTCAGGC | 59.9 | 0.27 |
| mm4_intron_Epb4.1l1_chr2_156509371_R | GTCTCGTGGGCTCGGTACCGGCTGTCTCTTCTGGA | 59.9 | 0.27 |
| mm4_intergenic_Gm22302|Uri1_chr7_37829835_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm22302|Uri1_chr7_37829835_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm7275|Gm7204_chr16_48160037_F | TCGTCGGCAGCGTCACAACAACAGCAAGCCATGT | 58.8 | 0.27 |
| mm4_intergenic_Gm7275|Gm7204_chr16_48160037_R | GTCTCGTGGGCTCGGAATATGCCCAGCTGGACCAC | 60.1 | 0.27 |
| mm4_intergenic_Gm15270/Ctgf|Enpp1_chr10_24631982_F | TCGTCGGCAGCGTCACAAGGAAAAGGTGGGCACA | 60.0 | 0.27 |
| mm4_intergenic_Gm15270/Ctgf|Enpp1_chr10_24631982_R | GTCTCGTGGGCTCGGTGGAGCCTCGTCTGTATTTCG | 59.8 | 0.27 |
| mm4_intergenic_Gm24291|Mon1b_chr8_113551664_F | TCGTCGGCAGCGTCGCGTTGTTCTGAACCGGAAG | 59.7 | 0.26 |
| mm4_intergenic_Gm24291|Mon1b_chr8_113551664_R | GTCTCGTGGGCTCGGCCTCTCCTTCCTCCCTTGGA | 59.9 | 0.26 |
| mm4_intron_Aprt_chr8_122575906_F | TCGTCGGCAGCGTCCACTTACCAGGGCCACTCTG | 60.0 | 0.26 |
| mm4_intron_Aprt_chr8_122575906_R | GTCTCGTGGGCTCGGACAACTGCTGTCTACCTGGC | 59.9 | 0.26 |
| mm4_intergenic_Nrsn1|Tpi-rs8_chr13_25401713_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Nrsn1|Tpi-rs8_chr13_25401713_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Slc22a5_chr11_53887775_F | TCGTCGGCAGCGTCTGCCATGAAACTGCAAAGGC | 59.9 | 0.25 |
| mm4_intron_Slc22a5_chr11_53887775_R | GTCTCGTGGGCTCGGCCTGCCTGTGCTAGCCAT | 59.4 | 0.25 |
| mm4_exon_D630003M21Rik_chr2_158204719_F | TCGTCGGCAGCGTCGCAAGCTGGCCAGAGTAGTT | 60.3 | 0.25 |
| mm4_exon_D630003M21Rik_chr2_158204719_R | GTCTCGTGGGCTCGGTGAGCAAGTCCAAGGAGCTG | 59.9 | 0.25 |
| mm4_intergenic_Tulp1|Fkbp5_chr17_28394226_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Tulp1|Fkbp5_chr17_28394226_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Rgag1|Gm4760_chrX_143181211_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Rgag1|Gm4760_chrX_143181211_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm17384|3110047P20Rik/Gm9954_chr5_63124570_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm17384|3110047P20Rik/Gm9954_chr5_63124570_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm22597|Gm24514_chr18_55410022_F | TCGTCGGCAGCGTCTGTGGCAGATGTGAAGGTCG | 60.3 | 0.22 |
| mm4_intergenic_Gm22597|Gm24514_chr18_55410022_R | GTCTCGTGGGCTCGGTTTTGCTGTCTCACCGTTGC | 59.6 | 0.22 |
| mm4_intron_Snd1_chr6_28900998_F | TCGTCGGCAGCGTCAAAGGCCAAGGAGATGAGGC | 60.0 | 0.22 |
| mm4_intron_Snd1_chr6_28900998_R | GTCTCGTGGGCTCGGAAGTCCTGGTGTGTGTGTGA | 59.0 | 0.22 |
| mm4_intron_Tjp2_chr19_24221091_F | TCGTCGGCAGCGTCTCCACTCAGCCTTGCAGAAG | 59.9 | 0.22 |
| mm4_intron_Tjp2_chr19_24221091_R | GTCTCGTGGGCTCGGACTCAGCCAAGATCTAGCAAGA | 58.8 | 0.22 |
| mm4_intergenic_Gjb2|Gm4491_chr14_57106694_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gjb2|Gm4491_chr14_57106694_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Nps|4930544L04Rik_chr7_135388236_F | TCGTCGGCAGCGTCTATGTGCAGCAATGGGCCTG | 61.0 | 0.22 |
| mm4_intergenic_Nps|4930544L04Rik_chr7_135388236_R | GTCTCGTGGGCTCGGTTGCAGCCATCCAGTGTTGA | 60.1 | 0.22 |
| mm4_intron_Npy2r_chr3_82542035_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Npy2r_chr3_82542035_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Igf2bp1/Mir3063_chr11_95961323_F | TCGTCGGCAGCGTCGGGAAGAGCCGGCTAAGGTA | 61.0 | 0.22 |
| mm4_exon_Igf2bp1/Mir3063_chr11_95961323_R | GTCTCGTGGGCTCGGAGCAGAGCTTTAGCCCTTGG | 60.0 | 0.22 |
| mm4_intergenic_Olfr519|Nlrp10_chr7_108899322_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Olfr519|Nlrp10_chr7_108899322_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Shfm1_chr6_6572276_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Shfm1_chr6_6572276_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Nodal_chr10_61418205_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_exon_Nodal_chr10_61418205_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_intergenic_RP24-234J3.4/Gm21971|Gm21971_chr12_102726023_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_intergenic_RP24-234J3.4/Gm21971|Gm21971_chr12_102726023_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Pqlc3_chr12_16991776_F | TCGTCGGCAGCGTCCCTGTCCCTGTGTCCTGAAC | 59.9 | 0.21 |
| mm4_intron_Pqlc3_chr12_16991776_R | GTCTCGTGGGCTCGGGGTGTACTTGGAGGGAGCTG | 59.7 | 0.21 |
| mm4_exon_Tbata_chr10_61188831_F | TCGTCGGCAGCGTCTCTACCTTGACTCCAGCCCC | 60.6 | 0.21 |
| mm4_exon_Tbata_chr10_61188831_R | GTCTCGTGGGCTCGGGGAGGGGACACTTCTCTTCT | 58.0 | 0.21 |
| mm4_intergenic_Gm7168|Dact2_chr17_14105711_F | TCGTCGGCAGCGTCCAACAGGTCTTCCAGCTCGT | 59.9 | 0.20 |
| mm4_intergenic_Gm7168|Dact2_chr17_14105711_R | GTCTCGTGGGCTCGGGTCACCATACCTGAGCTGCA | 59.7 | 0.20 |
| mm4_intergenic_Tm4sf20|Gm22396/Agfg1_chr1_82833076_F | TCGTCGGCAGCGTCTGGCTTCCCTACACTCTGGA | 59.8 | 0.20 |
| mm4_intergenic_Tm4sf20|Gm22396/Agfg1_chr1_82833076_R | GTCTCGTGGGCTCGGTGATGGCGTGTTCCCATCTC | 60.1 | 0.20 |
| mm4_exon_Shbg_chr11_69615560_F | TCGTCGGCAGCGTCTACCTGGTAAAGCCCCAAGG | 59.0 | 0.20 |
| mm4_exon_Shbg_chr11_69615560_R | GTCTCGTGGGCTCGGGGTCTTGAGCCAAGGACCAA | 59.8 | 0.20 |
| mm4_intron_Grm2_chr9_106649249_F | TCGTCGGCAGCGTCACACAGGTTCCACAGCAACA | 60.0 | 0.20 |
| mm4_intron_Grm2_chr9_106649249_R | GTCTCGTGGGCTCGGCAATATATTGCCTCCCTCCCCA | 59.3 | 0.20 |
| mm2_intergenic_E030044B06Rik|mmu-mir-8092/Zfp518a_chr19_40874234_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm2_intergenic_E030044B06Rik|mmu-mir-8092/Zfp518a_chr19_40874234_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm27043|Gm25020_chr13_17129549_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm27043|Gm25020_chr13_17129549_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Prdx6|Tnfsf4_chr1_161288471_F | TCGTCGGCAGCGTCTCTCTGGCTGTGCTCTCTCT | 59.9 | 0.19 |
| mm4_intergenic_Prdx6|Tnfsf4_chr1_161288471_R | GTCTCGTGGGCTCGGATTGGGAGTGAGCCTGTGAC | 59.6 | 0.19 |
| mm4_intergenic_Gm17118|Cacna2d2_chr9_107460849_F | TCGTCGGCAGCGTCCCAGCTAAGTCTGCCAGTCC | 60.1 | 0.17 |
| mm4_intergenic_Gm17118|Cacna2d2_chr9_107460849_R | GTCTCGTGGGCTCGGGAGCTTGGGGCAGACAAGAT | 60.0 | 0.17 |
| mm4_exon_Dpy19l4/Gm26663_chr4_11322139_F | TCGTCGGCAGCGTCCTCCGAGTATCCAAACCCCG | 59.8 | 0.17 |
| mm4_exon_Dpy19l4/Gm26663_chr4_11322139_R | GTCTCGTGGGCTCGGCTCCCTGCACTCTGGTTCC | 59.7 | 0.17 |
| mm4_intron_Lasp1_chr11_97808235_F | TCGTCGGCAGCGTCGGGCTCACACAAACCCTGAT | 60.2 | 0.17 |
| mm4_intron_Lasp1_chr11_97808235_R | GTCTCGTGGGCTCGGCTAAAGCAGTCCAGCACCCA | 59.9 | 0.17 |
| mm4_exon_C230012O17Rik_chr4_24964048_F | TCGTCGGCAGCGTCCACATGATGCTTTGTGATCCCC | 59.9 | 0.17 |
| mm4_exon_C230012O17Rik_chr4_24964048_R | GTCTCGTGGGCTCGGTCAGTTGTGTGCCTGCTTCT | 59.8 | 0.17 |
| mm4_intron_Zc3h12c_chr9_52167947_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Zc3h12c_chr9_52167947_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Agfg1|Slc19a3_chr1_82911557_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Agfg1|Slc19a3_chr1_82911557_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Frs2|Gm26311_chr10_117167749_F | TCGTCGGCAGCGTCACAAAAGGCTGTAGGGGACA | 58.8 | 0.16 |
| mm4_intergenic_Frs2|Gm26311_chr10_117167749_R | GTCTCGTGGGCTCGGTCCCTTACACACACCTCGAA | 58.2 | 0.16 |
| mm3_intergenic_Gm13232|Gm13244_chr4_145745017_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm3_intergenic_Gm13232|Gm13244_chr4_145745017_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Park2_chr17_10963721_F | TCGTCGGCAGCGTCCTCCAAGTCTTTGTGAGGCCT | 59.9 | 0.15 |
| mm4_intron_Park2_chr17_10963721_R | GTCTCGTGGGCTCGGACCATTATGCAATGAAAGCCATGT | 59.8 | 0.15 |
| mm4_intergenic_Gm833|Gm25779_chr4_152890532_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm833|Gm25779_chr4_152890532_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Gm23558|Galc_chr12_97676887_F | TCGTCGGCAGCGTCAGCAGTTTGGGGAAGCTAGA | 58.6 | 0.15 |
| mm3_intergenic_Gm23558|Galc_chr12_97676887_R | GTCTCGTGGGCTCGGGAGAGGCTAGAGGGATCCCA | 59.5 | 0.15 |
| mm4_intergenic_Gm22618|Gm22976_chr5_50435160_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm22618|Gm22976_chr5_50435160_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Ppargc1a|mmu-mir-6417_chr5_52115284_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Ppargc1a|mmu-mir-6417_chr5_52115284_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Lmtk3_chr7_45791498_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Lmtk3_chr7_45791498_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Crybb1|Tpst2_chr5_112269688_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Crybb1|Tpst2_chr5_112269688_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Reln_chr5_21900575_F | TCGTCGGCAGCGTCCTCTGGCAGGCTGTCTTACC | 60.1 | 0.13 |
| mm4_intron_Reln_chr5_21900575_R | GTCTCGTGGGCTCGGGGGAAAGCGAGCTCCATCAT | 60.1 | 0.13 |
| mm4_intergenic_Gm23980|Gm22810_chr15_24756775_F | TCGTCGGCAGCGTCGCAAGGTAGCCATGAAGAACC | 59.2 | 0.13 |
| mm4_intergenic_Gm23980|Gm22810_chr15_24756775_R | GTCTCGTGGGCTCGGCTGAATGCAGGAGCTGAGAGT | 59.7 | 0.13 |
| mm3_intergenic_Hormad2|Mtmr3_chr11_4459526_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intergenic_Hormad2|Mtmr3_chr11_4459526_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Dock2_chr11_34287476_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Dock2_chr11_34287476_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Ttll6_chr11_96146342_F | TCGTCGGCAGCGTCAAGCTTTCCCAGAAGCTGCT | 59.8 | 0.13 |
| mm4_intron_Ttll6_chr11_96146342_R | GTCTCGTGGGCTCGGGGCAGCTAGAAGGCCAGTTC | 60.7 | 0.13 |
| mm4_intron_Atp2b4_chr1_133767081_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Atp2b4_chr1_133767081_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_exon_Nono_chrX_101429638_F | TCGTCGGCAGCGTCACTGGCAGTTCACATAGCCA | 59.3 | 0.13 |
| mm4_exon_Nono_chrX_101429638_R | GTCTCGTGGGCTCGGCCACCGTCCCGAGAAAAGAG | 60.3 | 0.13 |
| mm4_exon_Col9a1_chr1_24179521_F | TCGTCGGCAGCGTCTTGAGAAGGCTGCATCTCGA | 59.1 | 0.13 |
| mm4_exon_Col9a1_chr1_24179521_R | GTCTCGTGGGCTCGGCCACTTGTAAGGCTGTGGAT | 57.5 | 0.13 |
| mm4_intergenic_Gm20696/Foxp1|Gm20705_chr6_99382635_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm20696/Foxp1|Gm20705_chr6_99382635_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm27043|Gm25020_chr13_17071225_F | TCGTCGGCAGCGTCTCATGTTCATGAGTAAACTGAGACT | 58.0 | 0.12 |
| mm4_intergenic_Gm27043|Gm25020_chr13_17071225_R | GTCTCGTGGGCTCGGTCCAATAAAACCCCTCTTCCCA | 59.0 | 0.12 |
| mm4_intergenic_Fbxl17|4930405O22Rik_chr17_63245524_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Fbxl17|4930405O22Rik_chr17_63245524_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Slmap_chr14_26534421_F | TCGTCGGCAGCGTCTTGGTTTCTCGGAGCTCTCG | 59.7 | 0.12 |
| mm4_exon_Slmap_chr14_26534421_R | GTCTCGTGGGCTCGGCAGTCCCTGCGATGCGAC | 60.8 | 0.12 |
| mm4_intergenic_Ptplb|Adcy5_chr16_35117462_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Ptplb|Adcy5_chr16_35117462_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Nfasc_chr1_132635793_F | TCGTCGGCAGCGTCCAGGGCCAGAGCAAACCTC | 60.6 | 0.12 |
| mm4_intron_Nfasc_chr1_132635793_R | GTCTCGTGGGCTCGGACCAAGGCCAGCTCTCTTTC | 59.9 | 0.12 |
| mm4_intergenic_Pard3|Gm6921_chr8_127518634_F | TCGTCGGCAGCGTCTAGCTGCATTTTCCAAGCCG | 59.1 | 0.12 |
| mm4_intergenic_Pard3|Gm6921_chr8_127518634_R | GTCTCGTGGGCTCGGCAGTGTTCACTTTGGAAGGCA | 58.9 | 0.12 |
| mm4_intergenic_Rarb|Thrb_chr14_16816793_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Rarb|Thrb_chr14_16816793_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm24503|Ccrn4l_chr3_50900570_F | TCGTCGGCAGCGTCCCCAAACTACCAGGTCAGGG | 59.6 | 0.12 |
| mm4_intergenic_Gm24503|Ccrn4l_chr3_50900570_R | GTCTCGTGGGCTCGGACCCAGTCATAGGAGGCTCA | 59.6 | 0.12 |
| mm4_intergenic_Eif3b|Chst12_chr5_140485967_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Eif3b|Chst12_chr5_140485967_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm22000|Myl4/Gm22000_chr11_104559908_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm22000|Myl4/Gm22000_chr11_104559908_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Cdkn2b|Gm12609_chr4_89312388_F | TCGTCGGCAGCGTCTGCTTCTGGGTGAAACGTCT | 59.5 | 0.10 |
| mm4_intergenic_Cdkn2b|Gm12609_chr4_89312388_R | GTCTCGTGGGCTCGGTTCCTCCGCCTCCCATTCTA | 60.0 | 0.10 |
| mm4_intergenic_Gm24444|Mgmt_chr7_136607308_F | TCGTCGGCAGCGTCTGCATGCTTGTGAGGTCATCA | 60.2 | 0.10 |
| mm4_intergenic_Gm24444|Mgmt_chr7_136607308_R | GTCTCGTGGGCTCGGTCAGAATTCCATGCATTTTAGCCA | 59.2 | 0.10 |
| mm4_intron_Gli2_chr1_118887044_F | TCGTCGGCAGCGTCAAAGATGAGGCTTGCCCGTT | 60.2 | 0.10 |
| mm4_intron_Gli2_chr1_118887044_R | GTCTCGTGGGCTCGGGTGCTCACAGGACTCCTTCC | 60.0 | 0.10 |
| mm4_intergenic_Trhr2|Gm20681_chr8_122363269_F | TCGTCGGCAGCGTCGTCCCAGGGCCAATCTGTAC | 60.1 | 0.10 |
| mm4_intergenic_Trhr2|Gm20681_chr8_122363269_R | GTCTCGTGGGCTCGGCAAGCCCAAGAGGACAGTGT | 59.8 | 0.10 |
| mm4_intron_Nxph1_chr6_9036939_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Nxph1_chr6_9036939_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Cep97|RPL24/RP24-288C12.6_chr16_55940243_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Cep97|RPL24/RP24-288C12.6_chr16_55940243_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Afap1l2_chr19_56930610_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Afap1l2_chr19_56930610_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Tpd52_chr3_8993108_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Tpd52_chr3_8993108_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Cd274|Pdcd1lg2_chr19_29408114_F | TCGTCGGCAGCGTCCTCTGACAACCCCTTCACCC | 59.9 | 0.08 |
| mm4_intergenic_Cd274|Pdcd1lg2_chr19_29408114_R | GTCTCGTGGGCTCGGGCTCTGACTCCTGGCCAAAA | 60.2 | 0.08 |
| mm4_exon_Pam_chr1_97977131_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Pam_chr1_97977131_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm21786|Mpp6_chr6_50045954_F | TCGTCGGCAGCGTCTGGCCTCTTTCTGAAGTGCT | 59.2 | 0.08 |
| mm4_intergenic_Gm21786|Mpp6_chr6_50045954_R | GTCTCGTGGGCTCGGTGCTCAAGAACAGCGAGAGG | 60.0 | 0.08 |
| mm4_intron_Mllt3_chr4_87907891_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Mllt3_chr4_87907891_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_3100003L05Rik_chr7_124659986_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_3100003L05Rik_chr7_124659986_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Onecut1/Gm20649|Fam214a_chr9_74907025_F | TCGTCGGCAGCGTCCTCTGAGGTCTGTGTGGCTG | 60.0 | 0.08 |
| mm4_intergenic_Onecut1/Gm20649|Fam214a_chr9_74907025_R | GTCTCGTGGGCTCGGCCAAGTTCAGGGACCCACTT | 59.5 | 0.08 |
| mm4_intron_Aff1_chr5_103749979_F | TCGTCGGCAGCGTCGAGGAGCCCTGCTTGGATAC | 59.8 | 0.08 |
| mm4_intron_Aff1_chr5_103749979_R | GTCTCGTGGGCTCGGTAAGGACAGGGCCACTTCCA | 60.4 | 0.08 |
| mm4_intron_Ank3_chr10_69940138_F | TCGTCGGCAGCGTCAAAGAGAAGTGGGGCAGGTG | 59.8 | 0.07 |
| mm4_intron_Ank3_chr10_69940138_R | GTCTCGTGGGCTCGGCAGAGACAGGAGCAGGCATC | 60.1 | 0.07 |
| mm4_intergenic_Ppp2r5a|Dtl_chr1_191397144_F | TCGTCGGCAGCGTCGGGGTGGAGGAAGGAGTTTG | 59.9 | 0.07 |
| mm4_intergenic_Ppp2r5a|Dtl_chr1_191397144_R | GTCTCGTGGGCTCGGGAGGGCACTGGCATGCTTTC | 61.9 | 0.07 |
| mm4_intergenic_Gm13237|Gm13233_chr4_146579899_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm13237|Gm13233_chr4_146579899_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm13167|Gm13169_chr4_146239254_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm13167|Gm13169_chr4_146239254_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm24979|Cdc5l_chr17_45342185_F | TCGTCGGCAGCGTCCAGTCCTGGGGCTTTGTAGG | 60.0 | 0.07 |
| mm4_intergenic_Gm24979|Cdc5l_chr17_45342185_R | GTCTCGTGGGCTCGGACAAAGAGAAAGGCTGCTGTG | 59.0 | 0.07 |
| mm4_intergenic_Gm16314|Gnb1l_chr16_18503819_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm16314|Gnb1l_chr16_18503819_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm12439|Gm12438_chr4_48720104_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm12439|Gm12438_chr4_48720104_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_St3gal1|Zfat_chr15_67116252_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_St3gal1|Zfat_chr15_67116252_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Wsb2_chr5_117365251_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Wsb2_chr5_117365251_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_2810408A11Rik_chr11_69898594_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_2810408A11Rik_chr11_69898594_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Lep_chr6_29070427_F | TCGTCGGCAGCGTCAAGAGTCATCAGGGCTGCAC | 60.0 | 0.06 |
| mm4_intron_Lep_chr6_29070427_R | GTCTCGTGGGCTCGGCATTAGGGTCAAAGCCGTGC | 59.5 | 0.06 |
| mm4_intron_Ttyh1_chr7_4123683_F | TCGTCGGCAGCGTCGCGCCCTATAGCCAAGATTT | 58.1 | 0.05 |
| mm4_intron_Ttyh1_chr7_4123683_R | GTCTCGTGGGCTCGGTGTTCCTAGGCTCTGAGGGG | 60.3 | 0.05 |
| mm4_exon_Ece1_chr4_137963009_F | TCGTCGGCAGCGTCAAAAGGGAAGGAGCTGCAGC | 60.8 | 0.05 |
| mm4_exon_Ece1_chr4_137963009_R | GTCTCGTGGGCTCGGGTGGTGAGGCTCCATCCATC | 60.1 | 0.05 |
| mm4_exon_Sh3rf2_chr18_42101714_F | TCGTCGGCAGCGTCGCCAGCTCTGTGGAAGTCAT | 60.0 | 0.05 |
| mm4_exon_Sh3rf2_chr18_42101714_R | GTCTCGTGGGCTCGGCCTTGAGGAAGGTCAGGCAG | 60.0 | 0.05 |
| mm4_intergenic_Nlgn2|Tmem256_chr11_69837852_F | TCGTCGGCAGCGTCCACACCCCTCGCTTGCAC | 61.3 | 0.05 |
| mm4_intergenic_Nlgn2|Tmem256_chr11_69837852_R | GTCTCGTGGGCTCGGCCCTGCTCTAGTTCGCTACG | 59.9 | 0.05 |
| mm4_intergenic_Gm20424|Lbx1_chr19_45197137_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm20424|Lbx1_chr19_45197137_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm25550|Cdh9_chr15_16151663_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm25550|Cdh9_chr15_16151663_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Olfr721-ps1|Slc4a7_chr14_14591590_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Olfr721-ps1|Slc4a7_chr14_14591590_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_A330033J07Rik|Id4/A330033J07Rik_chr13_48240776_F | TCGTCGGCAGCGTCCTGAGCTGTTTTGCACACCA | 59.2 | 0.04 |
| mm4_intergenic_A330033J07Rik|Id4/A330033J07Rik_chr13_48240776_R | GTCTCGTGGGCTCGGGGAAACGTACCTGTTCGGGT | 59.9 | 0.04 |
| mm4_exon_Zfp324_chr7_12966240_F | TCGTCGGCAGCGTCCTATGCCCAGGTCTCTCGC | 59.6 | 0.04 |
| mm4_exon_Zfp324_chr7_12966240_R | GTCTCGTGGGCTCGGCCTGGTGGGTCCTTGGAAAG | 60.2 | 0.04 |
| mm4_exon_Asmt_chrX_170676323_F | TCGTCGGCAGCGTCCACCGGAGACAGGAAGTGAC | 60.0 | 0.04 |
| mm4_exon_Asmt_chrX_170676323_R | GTCTCGTGGGCTCGGGTCTCGAACACGGTGACCTC | 60.3 | 0.04 |
| mm4_intergenic_Zfp385c|Gm11547_chr11_100673393_F | TCGTCGGCAGCGTCGAGTAGCTGCCAGGAGCCTC | 62.0 | 0.04 |
| mm4_intergenic_Zfp385c|Gm11547_chr11_100673393_R | GTCTCGTGGGCTCGGCGACGGCCTAGCTCTTTAGG | 59.9 | 0.04 |
| mm4_intergenic_Cacna1e|Gm9530_chr1_155053516_F | TCGTCGGCAGCGTCGGGTGAGGACAGAGAAGGGA | 60.2 | 0.04 |
| mm4_intergenic_Cacna1e|Gm9530_chr1_155053516_R | GTCTCGTGGGCTCGGCCAGGCTGAGCTTTGAGACA | 59.9 | 0.04 |
| mm4_intron_Git2_chr5_114766646_F | TCGTCGGCAGCGTCTTGGGGCTGGTTTGGAAACA | 60.3 | 0.04 |
| mm4_intron_Git2_chr5_114766646_R | GTCTCGTGGGCTCGGAGTGGAGTCCAGCTTTGCC | 59.9 | 0.04 |
| mm4_exon_Tmem92_chr11_94777676_F | TCGTCGGCAGCGTCCCTCTGCAGCACACACAGTA | 59.9 | 0.04 |
| mm4_exon_Tmem92_chr11_94777676_R | GTCTCGTGGGCTCGGTTTTGTCCTGTGGCTGAGGG | 60.1 | 0.04 |
| mm4_intergenic_Manbal|Src_chr2_157396803_F | TCGTCGGCAGCGTCTGCCTGTGTTGCTACTGAGG | 59.9 | 0.04 |
| mm4_intergenic_Manbal|Src_chr2_157396803_R | GTCTCGTGGGCTCGGCAGAGCTGCCCTTTCTCTCC | 60.1 | 0.04 |
| mm4_intron_Tmem117_chr15_94793910_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Tmem117_chr15_94793910_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Il13|Rps2-ps4_chr11_53635711_F | TCGTCGGCAGCGTCACACCCGCACATAGCCTTTT | 60.2 | 0.03 |
| mm4_intergenic_Il13|Rps2-ps4_chr11_53635711_R | GTCTCGTGGGCTCGGGGTGAGGGTGCATCTTGACA | 59.9 | 0.03 |
| mm4_exon_Sgsm3_chr15_81009392_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Sgsm3_chr15_81009392_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_exon_Sympk_chr7_19045830_F | TCGTCGGCAGCGTCTGAGAGAGGGAGCAGGACAA | 59.8 | 0.03 |
| mm3_exon_Sympk_chr7_19045830_R | GTCTCGTGGGCTCGGTCTCCAAGTGTCGACATGCC | 60.0 | 0.03 |
| mm4_intergenic_Fut10|Gm23539_chr8_31384959_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Fut10|Gm23539_chr8_31384959_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Gm10612/Cbfa2t3_chr8_122698857_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Gm10612/Cbfa2t3_chr8_122698857_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Uncx|Micall2_chr5_139550177_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Uncx|Micall2_chr5_139550177_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Prkar1a_chr11_109651059_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Prkar1a_chr11_109651059_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_2810442N19Rik/Dnm3|Pigc_chr1_162022336_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_2810442N19Rik/Dnm3|Pigc_chr1_162022336_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Hs1bp3_chr12_8324507_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Hs1bp3_chr12_8324507_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm3667|Gm6356_chr14_6951004_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm3667|Gm6356_chr14_6951004_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm3091|Gm3269_chr14_4799158_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm3091|Gm3269_chr14_4799158_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm26630|Gm8356_chr14_6514438_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm26630|Gm8356_chr14_6514438_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Zfp64_chr2_168947343_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Zfp64_chr2_168947343_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Pitx1_chr13_55833965_F | TCGTCGGCAGCGTCGGTTCACTGAAGCAGGTCGA | 59.9 | 0.00 |
| mm4_intron_Pitx1_chr13_55833965_R | GTCTCGTGGGCTCGGCCCACAACAATGCAGGCATC | 60.1 | 0.00 |
| mm4_intron_Parva_chr7_112557588_F | TCGTCGGCAGCGTCCCTAGCTCTCACACCCTCCT | 60.0 | 0.00 |
| mm4_intron_Parva_chr7_112557588_R | GTCTCGTGGGCTCGGCTAGACTGCTGGTGACCGAC | 59.8 | 0.00 |
| mm4_intron_Ifngr2_chr16_91560331_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ifngr2_chr16_91560331_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Eml5_chr12_98879947_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Eml5_chr12_98879947_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Clstn2_chr9_97796195_F | TCGTCGGCAGCGTCCATGTGACTGAAAGGAGGCCT | 59.9 | 0.00 |
| mm4_intron_Clstn2_chr9_97796195_R | GTCTCGTGGGCTCGGGCACTGGCTATAGGAAACATGG | 59.1 | 0.00 |
| mm4_intron_Ccdc11_chr18_74339668_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ccdc11_chr18_74339668_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Arhgef17_chr7_100918682_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Arhgef17_chr7_100918682_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Aff3_chr1_38639900_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Aff3_chr1_38639900_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Six2|Srbd1_chr17_85781894_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Six2|Srbd1_chr17_85781894_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pitpnc1|Psmd12_chr11_107470707_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pitpnc1|Psmd12_chr11_107470707_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Klf2|Eps15l1_chr8_72333059_F | TCGTCGGCAGCGTCGAAAGGACCCTGCAGCTCTT | 59.9 | 0.00 |
| mm4_intergenic_Klf2|Eps15l1_chr8_72333059_R | GTCTCGTGGGCTCGGAGGGCTCTCACCATAGGAGT | 59.3 | 0.00 |
| mm4_intergenic_Gm26556|Ppp1r9a_chr6_4971080_F | TCGTCGGCAGCGTCAATTCTGACTGGGTGGAGGC | 59.6 | 0.00 |
| mm4_intergenic_Gm26556|Ppp1r9a_chr6_4971080_R | GTCTCGTGGGCTCGGTGCCATCCCTCAATCCAAGT | 58.9 | 0.00 |
| mm4_intergenic_Gm25672|Barhl2_chr5_106247903_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25672|Barhl2_chr5_106247903_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Bach1|Gm23994_chr16_87738556_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Bach1|Gm23994_chr16_87738556_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_AC175117.1|Hnf4g_chr3_3201186_F | TCGTCGGCAGCGTCTCCTGGCACTTCGGATAGGA | 60.0 | 0.00 |
| mm4_intergenic_AC175117.1|Hnf4g_chr3_3201186_R | GTCTCGTGGGCTCGGTCGAAACATTGAGCTGGGAGA | 59.3 | 0.00 |
| mm4_intergenic_4930474N05Rik|Gm24394_chr14_36209749_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_4930474N05Rik|Gm24394_chr14_36209749_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Gmfb_chr14_46817189_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Gmfb_chr14_46817189_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm3_intergenic_Gm16063|Gm2301_chr5_119626555 |
CCACCTCCCTAGCCCAAAATTGTAAGAAACCACTTGGAAAACTAATTTCAGCGTCATGGTACAATCTGATTGGACTTTCC AGAGGGAGGGGGGAAAACGCTGATAGCCTTCTGCAGA |
| mm4_exon_Gm16287_chr4_139175852 |
CTGGGGCTTCGTTCTGTGATCTGCCGAGCCTTTGTTCAGACTCCCAAGAGGGAGGGAGGACCGGTTATTAAAAGAGCAGA TTCTTCGTTCAATATTTACCCCATACAACATTGCCTTG |
| mm3_intron_Plag1_chr4_3936878 |
CCAGAAGGTTCGCCAGTCTTGCCCTCCAGTCTCTCTGGGCAACAGCACCTTTCCACCCCTCCTCTGGAGAGCCCAGCTTA AAGAAAGGAGGGAGCCACTAACAAAACCCG |
| mm3_intron_Ccdc30_chr4_119385353 |
TGCAAATCGCCAATAGTCGCTACAACATTGCAAATTCTCAAATATCAGCTTCCACCTGTATTAGACAGGGCTCTCCAGAG AGGGGGAGGGCGGTGAGGGAGGGAAAGACT |
| mm4_intergenic_Gm24696|Myc_chr15_61984262 |
TTCTAGGGTCTCTGCAGGCTCCCCAGATCTGGGTTGGCAATTCACTCCTCCCCCTTTCTGGGAAGTCCGGGTTTTCCCCA ACCCCCCAATTCATGGCATATTCTCGCGTCTAGCGCCTTGATTTTCCCCACCCCA |
| mm4_intergenic_4930526D03Rik|Oprl1_chr2_181708878 |
ATTTTCTCTCCCGGCAGCTCTTTTTTCCCGCCCCCCCTCTTAATAGTCCTTTTTGTGTTAAAATATCTTTATTATACTGG GTAGTCCTTTTCAGTGTTAAAGTCAATGCTGCTGGTTGGGTCTTAG |
| mm4_intergenic_Gm26580/Kcnq5|Rims1_chr1_22043337 |
GCAAGAACACTGGGGAGGAAGCTAATAATTCTGAAAAGGGTAGGGGGGGACTCTCCAGAGGAAGTGTGGTTAAAGTTTTT CTTTGACCATTGAATATATTCCAGGAGAGAAATGCCAGAGGGAGATGGACA |
| mm4_intergenic_Thumpd2|Slc8a1_chr17_81178734 |
GGAGGGCCCAAATGCTTAGTTGGAGAGGGGATTGGAAACAGTGTTGAAAGCATTCAAAACTTTGGCCTATGCTTCCTTGG AAGACCCCCCCCCCCTCTGAAATGTCCCATCACCAGTAGTGTTGGGCATGTGTGGG |
| mm4_intron_Map4k3_chr17_80646217 |
CACAAGCTGGGACCCCATACGCAGGACCAGGACGTCTGGGGAAGGGGCAGCAGAGCCACAGGAGTCCCCAGAGGGAGGGC GGGAACAGAAAATGTTCCCGATGGCGGCGGTCTGTTTTAT |
| mm4_intron_Llgl2_chr11_115855262 |
GGCTCAGCAATGGAGAAGGTAGGGCTGTGGGCACTCCAGAGGAGGGGAGGGCCTGCTGCCAGGGAGGGATGGGAAGGCGG TCCTTAAAAGAACTGCCACCCCTCC |
| mm4_intron_Mctp2_chr7_72203189 |
GCCAATGGTGTAGAGCTGCTGAAAACCTCAAACACATGGAAACACAGAAGCAAACCCTCCAAAGGGGGGGAGGGGCGCTT AGGTGCCCAGGCATTTGTTTGTTCT |
| mm4_intergenic_RP23-417D20.1|RP24-129O14.1_chr9_80971705 |
ATGGGGTGTCCTGGAGAGGAACAAAAAAGAAGGGGGAGAAGAGGGACTCTGTAGAGGAGGGGAGGTTTCTCTGAGAGATG GTTGACAAACTACTCTACTACTACTACAAAAAAGGGGCATCGGGGTCATGGAAAT |
| mm4_exon_Pnkd_chr1_74286136 |
TCTGAAATGCGGGTGGAGAGCTGAATCCAAGGGAAGGAAATTGCTGGAGTCAAGGGATGGACTCTCAGAAGGGGGGGGGG GGCTAGGGTGGAAAAATATGTAAAATTGGGGGATAGTGGCTTTTCTGTGGAGCA |
| mm4_intergenic_Atp4b|Grk1_chr8_13403279 |
ACAACTGTATGTGCTCTGCCATTATCTCAAGAGTTTAACTGAACAAGGATACTCAGAGAGTATACCCTCCCCCCTCTGAA TAGTCTGGCCCGGGAACCGAACTCATCCTACTTTGGTGGCAAATTCTCCTCAGCCCCT |
| mm4_exon_B4galt2/Ccdc24_chr4_117872051 |
CGGAGGCCTTGGAGTAACTGTCGGAGTTCTTGGCGAATGAGGTCCCTCAAGAGGGGGGGTGGTGCCAGTAGGGAGGGAGG GTCAGAG |
| mm4_intron_Rbfox3_chr11_118732586 |
ATGAAGGAAGGCCACACAGGGTGCCAGCAGCTGGGACTGTGTGACCCCCAAGGTCTGCATCTGCCCTCAGCCTCACTCCC TCTGTAGAGTCTGAAAGTCTGGTTTCTGAGCTCCTGCA |
| mm4_intergenic_Gm25781|Ipo5_chr14_120848705 |
AAACACTGCCACCCTTTAAAAGGAATGTATTGTTCAGAATTTCTACAAAGCCTAGGCCCACCCCCTCTCTGGCTAGTCTG AACCGACTTTTACAACCTGCTGTCGCAGAAAGAGCAGCGAGTCA |
| mm4_intergenic_Frem2|Gm24851_chr3_53691394 |
GCTATCTGAAGCAGCCACTGACCCCCCCCCCCCTGAAGAGTTCAAATAGTATTATGACCAAGGAAAATATCCCTCCTAGT GATGGATGCTTGACTTAAGCTCAAGGTTATTTATGGAGTTTGTGGCCTTTGCTG |
| mm4_intergenic_Gm15387|Bai1_chr15_74483491 |
AAACCCAGGAAGCATGCAGACCTGCAATGTTTAAGGAAGCCAGCAGACCCAGGCAGATGCCCGCTGGTCAACAGACAGAA GACAACAGACTCTAAAGGGGGGGGGGGGGGAGACAGTGATGGCGACCACTT |
| mm4_exon_Prkcd_chr14_30595733 |
TGATGGCAAAGGGAAGGCAAATTCACAAACAGTTCACAGAGGAAGTACTGTGAGCCCAGCCAGCAGGAGCCGGACTCTCC AAGGAGGAGGGGGTGGCAGCAGAAATCAGCCAGTC |
| mm4_intron_Map1b_chr13_99465616 |
TCTTTTCCAGCATGTAAACGCATTTTATATCCACCTCTCCTCTGAAGAGTCAGAGAAATGGGGAGAAAGAGAAAAGGGCC GTCCAC |
| mm4_intron_Prkca_chr11_108032698 |
ACGAGGCCATCAACAGTGAGACTCAGTGAGAACAGGAACTTGGTTGGCCGACCTGCCCCCCTCTGTGGAGTCCTCTCCTC TCAGTCAAGATGGATTGAGCCGAGTAACCATCCAGG |
| mm4_intergenic_Tcf7|A630014C17Rik_chr11_52283453 |
GTCGGAACATCAAAGGCACCGCGGGCAGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGAGGGGCTAA CGTCCCAGGCCCCGCCCTCCCCTCCCTGGAGAGACCGGGACAGGCCCACTGGGAATAA |
| mm4_intergenic_Atp1a3|Grik5_chr7_25008251 | GTGCATAACGCTCCCAATGCGAGACTCTGCAGAAGGGGGGTGGGGAGACTTTGGAAGGTCACAGGGATGGAGGA |
| mm4_intergenic_PVT1_3|Ndufa4_chr6_11485692 |
ATGCACGGGACCAGAACATTCAAGCACAACACGAGGGATACATGCAGCATGAGAAATGAGAAGATGAAGAAGCCTTCTTG ACTTTCCAGAGGGGGTGTGGCAGTAATGGCACCTCATTTCCAGGTT |
| mm4_intron_Csmd2_chr4_128299765 |
AGTGCAATTTCTACACCAATTGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNCTCCTCCCCTCTGGATAGTTTGGGTGGCCCTCACTGTTACTA |
| mm4_intergenic_Gpr158|Gm13337_chr2_21961447 |
GAGTCAGCCCAGAAACCACAGTTCACAAACACCAGGTGTGGCCTTTCATATTAACTCAAGACCAAGGAGAGTCTTCATTT ACATCCTTGCAGACTCTGCAGGGGGAGGGTGGCAGATAGTTTCAGGCAATCCCTTCTGCA |
| mm4_intergenic_Rhobtb1|Cdk1_chr10_69300423 |
ACAGAAGAGAGTGGGGAAAGCTGTACTCTACAGAGGGGAGGGGGAGGGGGGCCTTGAGTAGAGCTCTGAACCCTGGGGAT AGCA |
| mm4_intergenic_Lce3f|Crct1_chr3_92999996 |
GGACAGAAATTTGGGAGCTGGATGGGGGAAGCTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNTCCCAGGAGAGATTGACATTTTGCTTCCAGGTTGTCTCAGG |
| mm4_intergenic_Camta1|4930589P08Rik_chr4_151349014 |
CGAAAGGACAGCCACTTCCTAGATCCATAGGAAAAGGAACCGAACTCTCAGGGGGGGGGGGGGAATCCTCCTCAAAGAGC CAGATTTTCATATAAATAATAGACATGTCGAGGCATAGGATGTCTC |
| mm4_intron_Epb4.1l1_chr2_156509371 |
GATGGAGGTATGGCTCAGGCTACAGCTGGGGAGAGAGTGGTCCTCAGAGGAGAGGAGGGGCGTGGACAGGGCGGGTTCTC CAGAGGAGAGGAGGGGCGTGGACAGGGCGGGTTCTCCAGAAGAGACAGCCGGTA |
| mm4_intergenic_Gm7275|Gm7204_chr16_48160037 |
ACAACAACAGCAAGCCATGTTTTAGTTTAAAGAATCCAGACTCACCAGACAGGGGGTGGGAACACTGTTTATGGTGTGGT CCAGCTGGGCATATT |
| mm4_intergenic_Gm15270/Ctgf|Enpp1_chr10_24631982 |
ACAAGGAAAAGGTGGGCACAAGAATGACGTAAACCACCACCACCCCTCTGGAGAAACCACATCAAAAGCTTCCGAAATAC AGACGAGGCTCCA |
| mm4_intergenic_Gm24291|Mon1b_chr8_113551664 |
GCGTTGTTCTGAACCGGAAGAAGTGAAGACAGCTTCCTCCTACCCCCATCTCAGAGCAGAGCAACTTCCTCTTGACTTTC CCTCCCCTCCCCTGGAGAATCAGGGAGTAGCAGGTAACACTCCAAGGGAGGAAGGAGAGG |
| mm4_intron_Aprt_chr8_122575906 |
CACTTACCAGGGCCACTCTGTTCTCTGGGGTGCCCACCCTCCCTCTGGACACTCCTGGTGGACATTCAGCTGTCCTAGGG TGTTTCTGAAGCTCAGGCATGGAGCCAGGTAGACAGCAGTTGT |
| mm4_intron_Slc22a5_chr11_53887775 |
TGCCATGAAACTGCAAAGGCAAAAAATGAGGGTCTGTGATTCTCCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCTAGCACAGGCAGG |
| mm4_exon_D630003M21Rik_chr2_158204719 |
GCAAGCTGGCCAGAGTAGTTCCACCTTCCCTCTGGAGAGCCAGCAGGCCCGGGTCCCTCAGCACCGTCTCCATCAGCTCC TTGGACTTGCTCA |
| mm4_intergenic_Gm22597|Gm24514_chr18_55410022 |
TGTGGCAGATGTGAAGGTCGCCCTTGTAATGGAATAAGTGAGATGGAGAGTGACCCCCCCCCCCCCCCGGAAGAGTCCTG ATACAACGGCGTTAGATCTAAGATGGCTCCCAAGCAACGGTGAGACAGCAAAA |
| mm4_intron_Snd1_chr6_28900998 |
AAAGGCCAAGGAGATGAGGCTGTAATGCACCCTCCAGGGGGGGGGGGGGAGAAACAGAGACCCTTCCCATTCCTATCACA CACACACCAGGACTT |
| mm4_intron_Tjp2_chr19_24221091 |
TCCACTCAGCCTTGCAGAAGTAAGAAGAATTAGCGGTTGGAACGCTGTGAATGCCGGAATCTCTNNNNNNNNNNNNNNNN NNNNNNNAATGGACAGACTTTCTTGCTAGATCTTGGCTGAGT |
| mm4_intergenic_Nps|4930544L04Rik_chr7_135388236 |
TATGTGCAGCAATGGGCCTGCACACATGCACACATGCAAACACACGGAGTCTCTAAAGGGGGGCTGGAGTGATTGAAGCT GCAATTTAGCAAAAACCTTCGTGTAGAGTCAGTCAACACTGGATGGCTGCAA |
| mm4_exon_Igf2bp1/Mir3063_chr11_95961323 |
GGGAAGAGCCGGCTAAGGTACTGTCTCACCAGAGGGGAGGAGGGGTGCCCACAGTTTGACCCCCAAGGGCTAAAGCTCTG CT |
| mm4_intron_Pqlc3_chr12_16991776 |
CCTGTCCCTGTGTCCTGAACTACTTGCTATGGCCAGCCCTGGCCATATTGGGTGTCACTCCTCTGATCAAATCCTTATTT AGCTTTTAAGACCTTGCCCCCTCTGGAGACTCTGCTCTCAGCTCCCTCCAAGTACACC |
| mm4_exon_Tbata_chr10_61188831 |
TCTACCTTGACTCCAGCCCCTGGCCTCCAACAGTACTAAATAAAATCCTGCCCTCCCTCTTGGATGAGGGCAGTTCCACC CTCCCTCAGGAGTGTCTGTGTTTAGATGGTTTCTTCTAGAAGAGAAGTGTCCCCTCC |
| mm4_intergenic_Gm7168|Dact2_chr17_14105711 |
CAACAGGTCTTCCAGCTCGTCGGACACCCCACAGGGGGCGGGGTATACACCTGCCAGTATCTGCCTTTGCAGCTCAGGTA TGGTGAC |
| mm4_intergenic_Tm4sf20|Gm22396/Agfg1_chr1_82833076 |
TGGCTTCCCTACACTCTGGATTCTTCTTGCTGTCAGTTAACCCCTGCCTCTCTGGAGAGTCAGTCTCAGGTCCCAGAGGA GCTCGGGGTGAAGGAACAACTGAAGACTAAGAATGGAGATGGGAACACGCCATCA |
| mm4_exon_Shbg_chr11_69615560 |
TACCTGGTAAAGCCCCAAGGGAGAGATGGCCCTGAGGGTGGGACCAGAGTCTCCAGAGGGAGGCAGGTCTCAAAAGAGAC ATAGAAAGGACTTCCATCTTTGGTCCTTGGCTCAAGACC |
| mm4_intron_Grm2_chr9_106649249 | ACACAGGTTCCACAGCAACAGAGCTAGCTAACTCTCCGGGGGGGGGGGGGTGGGGAGGGAGGCAATATATTG |
| mm4_intergenic_Prdx6|Tnfsf4_chr1_161288471 |
TCTCTGGCTGTGCTCTCTCTTTGCCCCAGTCGCTGCCTTGTAATCCTGACCCGCCAGAGGGGGCGGGGCCTCGCGGAGGC ACGCCCCCCACGTCACAGGCTCACTCCCAAT |
| mm4_intergenic_Gm17118|Cacna2d2_chr9_107460849 |
CCAGCTAAGTCTGCCAGTCCTCTGCCCCCTCCCCTCTGGAGTGGCTGGCTTCCCCCTGCCCCAGCTCTTCAGTATCATCA CCATCTTGTCTGCCCCAAGCTC |
| mm4_exon_Dpy19l4/Gm26663_chr4_11322139 |
CTCCGAGTATCCAAACCCCGCGGCCGCCCCGGCCAGCTCCCGGCTGCCGCGCCCCCACTTCCTGACCCGCCCCCCTCTGG TGTCTCCGCCAACTGGGTCCCTCCAAGGCGCTCCGGGAACCAGAGTGCAGGGAG |
| mm4_intron_Lasp1_chr11_97808235 |
GGGCTCACACAAACCCTGATTCTCTGCCACTTCCTCCCCCCAACCCCCCTTTGGAGAGTGGGGTGAGGTTCAGAGGAAAA AAAAAAAAGCCCAGGGCATTTAACCCTTTGGGTGCTGGACTGCTTTAG |
| mm4_exon_C230012O17Rik_chr4_24964048 |
CACATGATGCTTTGTGATCCCCCCGCCCCCCCACTGGAGGGTCATCTCTCCGCAGCTCAATCTACTTTCATGGGGACTGT GGCCATATTCTCCATCACTGCTCCTGTACATTTAGAAGCAGGCACACAACTGA |
| mm4_intergenic_Frs2|Gm26311_chr10_117167749 |
ACAAAAGGCTGTAGGGGACAGATCCCCCCCCCCCCCCCGGGAGTCCGAGCATACGTTACATAAAGGTCATCCTATTCGAG GTGTGTGTAAGGGA |
| mm4_intron_Park2_chr17_10963721 |
CTCCAAGTCTTTGTGAGGCCTATACCAACATCTTTTTAAACTATGTATTTCAACAAAGAATGTTTTACACATACATTTGC CCCCCCCCCCATGGAGAGTTTGTACATGGCTTTCATTGCATAATGGT |
| mm3_intergenic_Gm23558|Galc_chr12_97676887 |
AGCAGTTTGGGGAAGCTAGAACCATCAAGGATAAAGAGAGGAGGAGTCTCCAGAGGGTGGGGGGGATGTTTGATAATTGG GGTGAAGGAATTATCCTCTCCCTGATGGGATCCCTCTAGCCTCTC |
| mm4_intron_Reln_chr5_21900575 |
CTCTGGCAGGCTGTCTTACCCCCCCCCCCCCCCCCCGAGAGTCTGACCAGATATTGTCCCAAACATTGGCCTCTAGAAGC CCAAGCAGTAGAAATGAACTTGGTTGTATGATGGAGCTCGCTTTCCC |
| mm4_intergenic_Gm23980|Gm22810_chr15_24756775 |
GCAAGGTAGCCATGAAGAACCAACTCCCCCCCCCCCCCCCGAGAGTCTGGATGTTGCACAGTCACACTTACTCTCAGCTC CTGCATTCAG |
| mm4_intron_Ttll6_chr11_96146342 |
AAGCTTTCCCAGAAGCTGCTGGCACGCCACAAATGTCACACTGCTCCTCTGAACAACATGGACTCTTCAGGGGGCGGGCG GGAACTGGCCTTCTAGCTGCC |
| mm4_exon_Nono_chrX_101429638 |
ACTGGCAGTTCACATAGCCAATCGGGAATCCAAAATTGACCCCCCCCCCCCTCGGGAGGTACCGAGCTCCGTCGGCTCGT TTCCGGCGGTCGCGCGCTCTTTTCTCGGGACGGTGG |
| mm4_exon_Col9a1_chr1_24179521 | TTGAGAAGGCTGCATCTCGAAGGACTATCCAGAGGGTGGTGGGATCCACAGCCTTACAAGTGG |
| mm4_intergenic_Gm27043|Gm25020_chr13_17071225 |
TCATGTTCATGAGTAAACTGAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNCTCTCCAAAGTCAGAGGGATTTTTAGTTGGGAAGAGGGGTTTTATTGGA |
| mm4_exon_Slmap_chr14_26534421 |
TTGGTTTCTCGGAGCTCTCGGGCTCTGCTGCTCAGCACATGGGCCACCTCCCCTCAGGAGCGTCCTCGCGAGGGTCGCAT CGCAGGGACTG |
| mm4_intron_Nfasc_chr1_132635793 |
CAGGGCCAGAGCAAACCTCCCCCCCCCCCCCCACTGCATTGTCCGAGACACAGTCTCCTACTCTGAGACAGTAACATATG ATTTAACATCTTCACTTTGCTACGATGTATCATTTGGCAGAAAGAGAGCTGGCCTTGGT |
| mm4_intergenic_Pard3|Gm6921_chr8_127518634 |
TAGCTGCATTTTCCAAGCCGGCCTCCTGAGGGCGGAGCCCCCCCCCCCCCCCCCCAGGAGACTCCACAACATTGGAAACA TTCTTTCTTTTTTATACCTTTAGAATGCCTTCCAAAGTGAACACTG |
| mm4_intergenic_Gm24503|Ccrn4l_chr3_50900570 |
CCCAAACTACCAGGTCAGGGTTTGATACAAAATCAAGCTAGATACAGTGCAAAGTGCCACCTCCGCTCTGGGGAGACCGT GTGAGCCTCCTATGACTGGGT |
| mm4_intergenic_Cdkn2b|Gm12609_chr4_89312388 |
TGCTTCTGGGTGAAACGTCTTCCCGCCCCCCCCTCGGGAGTCCGTCATTCACGGTTGCCAGTGTGCACAGGTAGAATGGG AGGCGGAGGAA |
| mm4_intergenic_Gm24444|Mgmt_chr7_136607308 |
TGCATGCTTGTGAGGTCATCAAATTTAAATTGAGGCTCAGGCCTATAAAGCACATTAATAAAAATACTGTACTCTACAGA GGGTGGGGGGAATTTAATATGAATGGCTAAAATGCATGGAATTCTGA |
| mm4_intron_Gli2_chr1_118887044 |
AAAGATGAGGCTTGCCCGTTCACAAGACATCTATTGTGCACTGGCAGACATGTGGCAGTCCCCCTACCCCCTGGAGGGTC CGAGACAACAGCAGATCTTTGGGTAAGACGGAAGGAGTCCTGTGAGCAC |
| mm4_intergenic_Trhr2|Gm20681_chr8_122363269 |
GTCCCAGGGCCAATCTGTACCAACATCAGCAGCCTAGGTCTCTCCAGCAGGGGGGCGGGGAGGGGAAGCATGGACACTGT CCTCTTGGGCTTG |
| mm4_intergenic_Cd274|Pdcd1lg2_chr19_29408114 |
CTCTGACAACCCCTTCACCCCCAACCCCCCCACCCCCGCTCTGAAGAGGCCTTTCTGGGGGAAGGAGATCTGACTTAAAT TTGACAATTTTGAGTTCAGTAACTTGCCTTTTGGCCAGGAGTCAGAGC |
| mm4_intergenic_Gm21786|Mpp6_chr6_50045954 |
TGGCCTCTTTCTGAAGTGCTTGTCTTCCTCCAGCCCTCTGCAGAGTCTGACATGACAGCCCCTTCTTTGAAATGGGATTT CTGTGCCACTGTTGCTTCTTGAGATGTTTCCCAGTCCTCTCGCTGTTCTTGAGCA |
| mm4_intergenic_Onecut1/Gm20649|Fam214a_chr9_74907025 |
CTCTGAGGTCTGTGTGGCTGGAGGAACTAAAGACTCTAGAGAGAGACTTCAACTGCCCTCCCACCCTCGGGTGAGTCCTC TGATAATATTAACACAGAGCTTCCTGCTACCTCTGAAGTGGGTCCCTGAACTTGG |
| mm4_intron_Aff1_chr5_103749979 |
GAGGAGCCCTGCTTGGATACTTGCTGAGCTCTGGGGTTGGGACCCACCCACCCTCTGGAGAGAACAGTCCCTTGGAAGTG GCCCTGTCCTTA |
| mm4_intron_Ank3_chr10_69940138 |
AAAGAGAAGTGGGGCAGGTGCCCCGCCCCCTATGGATACTCCGCCCCCTATAGATGCCCCGCCCCCACGGATGCCTGCTC CTGTCTCTG |
| mm4_intergenic_Ppp2r5a|Dtl_chr1_191397144 |
GGGGTGGAGGAAGGAGTTTGACTGACAACTTCCGCGGGGTCCCACTAGCCTCCGGAGTCTCCGGAGGGGGCCGGGGCGGG AAAGCATGCCAGTGCCCTC |
| mm4_intergenic_Gm24979|Cdc5l_chr17_45342185 |
CAGTCCTGGGGCTTTGTAGGTCTCTTGCATGCCACACGGGCTTTCTCAGTTTTTGTATTGCACAGGTTTTCTAACAGAAG CTCGGACTCCCGAGATGGGAGGGGGCACAGCAGCCTTTCTCTTTGT |
| mm4_intron_Lep_chr6_29070427 |
AAGAGTCATCAGGGCTGCACATGGAGAGGCCCAACTACCCAAATGTGGGTGGAAATGAGAGGAAGCCAGTGGGAAAAGCC CTTCCTGGTAACCAGACTCAGCAGAGTGGGGGGGGGGGGCACGGCTTTGACCCTAATG |
| mm4_intron_Ttyh1_chr7_4123683 |
GCGCCCTATAGCCAAGATTTTTTTTCTCATCAGGCTCTCCAGAATGGGGGTGGATGGGGGTGGGATGTTGAAAAAGGCCC AGTGGGGGTGAGGCACAGCCCCAGCCCCCTCAGAGCCTAGGAACA |
| mm4_exon_Ece1_chr4_137963009 |
AAAAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCCCCTCGGCCTAGGGCCCCTTC CCCACTCTGGAGAGTATGCAGCCATCCTAAGCCTAAGATGGATGGAGCCTCACCAC |
| mm4_exon_Sh3rf2_chr18_42101714 |
GCCAGCTCTGTGGAAGTCATCAAACAGCTGCCCCAACCACCCCCACTCTGCAGAGCCCTCTACAACTTTGACCTTCGAGA CAAGGATAAGAGTGAGAACCAGGACTGCCTGACCTTCCTCAAGG |
| mm4_intergenic_Nlgn2|Tmem256_chr11_69837852 |
CACACCCCTCGCTTGCACCCGCCTGCCCACCCGCCCTCTGGAGTGTGGGGGGGGATTGAAGACAGTGAAAGGGGTGGGAG TGGACAGACGGACGGATGGACGTAGCGAACTAGAGCAGGG |
| mm4_intergenic_A330033J07Rik|Id4/A330033J07Rik_chr13_48240776 |
CTGAGCTGTTTTGCACACCATAAGGAAGATTATCAACCTCATGAATATAAAGCCAGAACTCTCTCTCCTGAGGGGGGGCG GGGGGCGGGAAGCAAAACCCGAACAGGTACGTTTCC |
| mm4_exon_Zfp324_chr7_12966240 |
CTATGCCCAGGTCTCTCGCCCGTCATGCCCCGCCCCCACTGCAGATTCCGGCGGCGGCAACCTGGCCGCTGACAAATCCA CCGCGGGTGAGTGTAGGAATCTTTCCAAGGACCCACCAGG |
| mm4_exon_Asmt_chrX_170676323 |
CACCGGAGACAGGAAGTGACGTCACCCCCCCCCCCCGCAGGTGGGTCCGGGGCGCTGGCCCGCATGGCCGCCCGGCTCTA CCCGGGCAGCGAGGTCACCGTGTTCGAGAC |
| mm4_intergenic_Zfp385c|Gm11547_chr11_100673393 |
GAGTAGCTGCCAGGAGCCTCTCCAGCCCCGCTCTGGAGAGCCAGAGAGGGACTCCTTCCCCTGCCTAAAGAGCTAGGCCG TCG |
| mm4_intergenic_Cacna1e|Gm9530_chr1_155053516 |
GGGTGAGGACAGAGAAGGGAAGGGGAGGGTGGGAAGCAGCAGCAGAACAGGAGCTGGCTCCCACTCTCCAGGTGGGGGGT GGCAGGAACTGGGAGTGTCTCAAAGCTCAGCCTGG |
| mm4_intron_Git2_chr5_114766646 |
TTGGGGCTGGTTTGGAAACAAATAAGAACACAGTTCACTTAACAGCTCTGACACATTTCTCATTCTTTGTGCTGTAAGAA GAGGAAGTGACACCCCCCCCCCCCCACTGGACAGTAAGAAGGGCAAAGCTGGACTCCACT |
| mm4_exon_Tmem92_chr11_94777676 |
CCTCTGCAGCACACACAGTAAACAGAGGGGCAAGGTGCCAAGGCATGGGCACCAGGAACTGTCTTCACTCTCCCCACCCA CTCTGGACAGTCCAAGCTCCAAGCTGTCCTCAGCCCCTCAGCCACAGGACAAAA |
| mm4_intergenic_Manbal|Src_chr2_157396803 |
TGCCTGTGTTGCTACTGAGGAGGGAAAGGGGCAGCCTGGGTCTCTCCTGAGGGTGGGGGGAACACTGTCCCCAAGAAGTG GGACAGTGTGGAGAGAAAGGGCAGCTCTG |
| mm4_intergenic_Il13|Rps2-ps4_chr11_53635711 |
ACACCCGCACATAGCCTTTTCCCTACTCTTTCCTCATACTGAGCCACCCACCCCCTGCAGAGGCCGCAGCATTTGCCTAT TGGGTAGTGATGTCAAGATGCACCCTCACC |
| mm3_exon_Sympk_chr7_19045830 |
TGAGAGAGGGAGCAGGACAAGAGTAAGCTTGCACAACAGCCTGAGCATCACCCCCCCTCTGCAGAGTCGTGCCTACCTGG GCATGTCGACACTTGGAGA |
| mm4_intron_Pitx1_chr13_55833965 |
GGTTCACTGAAGCAGGTCGAGTTCTATTCCACTACCCTTCCCACCTGTGCAGAGTCCGAAATATTTCTCTGTCCTTCAAG AAACCGGGAGACGGTGATCTGGAGATGCCTGCATTGTTGTGGG |
| mm4_intron_Parva_chr7_112557588 | CCTAGCTCTCACACCCTCCTCCTCCCTCCCTCCCAACCTCTGCAGAGACCGGAGTCGGTCACCAGCAGTCTAG |
| mm4_intron_Clstn2_chr9_97796195 |
CATGTGACTGAAAGGAGGCCTACTGAAATGGAGTCTCTAGAGGCGGGGAGGTATAGCTCTGTGCTTTTTAATGTGTACTT TATAGTACTTTCCATGTTTCCTATAGCCAGTGC |
| mm4_intergenic_Klf2|Eps15l1_chr8_72333059 |
GAAAGGACCCTGCAGCTCTTGCCCATCTGTTGTTGCTTCTGTGGAAGCTGATGTTTATGGCTGAACAATTGCTACAAACT GACTTTCCTGAGGTGGGGTGGTGGTGGGGGGACTCCTATGGTGAGAGCCCT |
| mm4_intergenic_Gm26556|Ppp1r9a_chr6_4971080 |
AATTCTGACTGGGTGGAGGCTGGTCTGGAACCCCCTCACCTCAGGAGACTCCGATTGTTTGGACTGGAAATTGTACTTGC ACTTGGATTGAGGGATGGCA |
| mm4_intergenic_AC175117.1|Hnf4g_chr3_3201186 |
TCCTGGCACTTCGGATAGGAAACATACTCCAAGAACCACAGTCAGCCCTCCCACCCCTGGAGAGTCAGAACTGAGCCTGG GTCTCCCAGCTCAATGTTTCGA |