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Contents:

PCR primers for off-targets of GACTCTCCAGAGGGGGGGAG GGG

In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.

In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.

If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.

Maximum amplicon length:     Primer Tm:

NamePrimer Sequence Tm CFD Score
ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313816_F TCGTCGGCAGCGTCAGGGAGCCTGGGATTAGGAG 60.1 1.00
ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313816_R GTCTCGTGGGCTCGGGTCCTTTCGGCTCTCCATCC 60.1 1.00
mm3_intron_Nkain1_chr4_130539400_F TCGTCGGCAGCGTCGCAAGGAGGACATCAAGGCT 60.0 0.87
mm3_intron_Nkain1_chr4_130539400_R GTCTCGTGGGCTCGGTCACCCCATGACTGTTTGTC 57.7 0.87
mm4_intergenic_Gm13418|Gm13417_chr2_24513083_F TCGTCGGCAGCGTCATGCTGGCAGGAAAGAACCA 59.8 0.80
mm4_intergenic_Gm13418|Gm13417_chr2_24513083_R GTCTCGTGGGCTCGGTCTGCATGGGCTCATTTCCC 60.3 0.80
mm3_intron_Cmip_chr8_117412744_F Primer3: not found at this Tm N.d. 0.77
mm3_intron_Cmip_chr8_117412744_R Primer3: not found at this Tm N.d. 0.77
mm4_intergenic_Ins1|Xpnpep1_chr19_52824084_F Primer3: not found at this Tm N.d. 0.76
mm4_intergenic_Ins1|Xpnpep1_chr19_52824084_R Primer3: not found at this Tm N.d. 0.76
mm2_intergenic_Eya1|Msc_chr1_14745697_F Primer3: not found at this Tm N.d. 0.76
mm2_intergenic_Eya1|Msc_chr1_14745697_R Primer3: not found at this Tm N.d. 0.76
mm3_intergenic_Gjb2|Gm4491_chr14_57106696_F Primer3: not found at this Tm N.d. 0.64
mm3_intergenic_Gjb2|Gm4491_chr14_57106696_R Primer3: not found at this Tm N.d. 0.64
mm3_exon_Igf2bp1/Mir3063_chr11_95961325_F TCGTCGGCAGCGTCGGAAGAGCCGGCTAAGGTAC 59.8 0.63
mm3_exon_Igf2bp1/Mir3063_chr11_95961325_R GTCTCGTGGGCTCGGAGCAGAGCTTTAGCCCTTGG 60.0 0.63
mm3_intron_Zfp389_chr13_21506373_F TCGTCGGCAGCGTCGCTCCACAGACTGCAGTTCT 59.9 0.60
mm3_intron_Zfp389_chr13_21506373_R GTCTCGTGGGCTCGGCCGTACTCTCCACCCCTCA 60.0 0.60
mm3_intergenic_Vegfa|Mrps18a_chr17_46110182_F Primer3: not found at this Tm N.d. 0.57
mm3_intergenic_Vegfa|Mrps18a_chr17_46110182_R Primer3: not found at this Tm N.d. 0.57
mm4_intergenic_Gm14366|Gm14375_chrX_5627930_F Primer3: not found at this Tm N.d. 0.57
mm4_intergenic_Gm14366|Gm14375_chrX_5627930_R Primer3: not found at this Tm N.d. 0.57
mm4_intergenic_Mrps33|Gm26833_chr6_39859719_F TCGTCGGCAGCGTCGTTTGCAAGGGTAGACACGC 59.7 0.56
mm4_intergenic_Mrps33|Gm26833_chr6_39859719_R GTCTCGTGGGCTCGGGGCCATCCTTACCAAGACCA 59.3 0.56
mm3_intron_Megf11_chr9_64478062_F Primer3: not found at this Tm N.d. 0.55
mm3_intron_Megf11_chr9_64478062_R Primer3: not found at this Tm N.d. 0.55
mm4_intergenic_Asxl3|Nol4_chr18_22612035_F Primer3: not found at this Tm N.d. 0.54
mm4_intergenic_Asxl3|Nol4_chr18_22612035_R Primer3: not found at this Tm N.d. 0.54
mm3_intron_Mctp2_chr7_72203191_F TCGTCGGCAGCGTCGCCAATGGTGTAGAGCTGCT 60.3 0.54
mm3_intron_Mctp2_chr7_72203191_R GTCTCGTGGGCTCGGAGAACAAACAAATGCCTGGGC 59.9 0.54
mm4_intergenic_Lin52|Vsx2_chr12_84547079_F TCGTCGGCAGCGTCCCCTCTAGGACCACCCTCTC 60.1 0.53
mm4_intergenic_Lin52|Vsx2_chr12_84547079_R GTCTCGTGGGCTCGGCTGCCAAAACTGAAGGGTGG 59.3 0.53
mm4_intron_Clasrp_chr7_19588128_F Primer3: not found at this Tm N.d. 0.47
mm4_intron_Clasrp_chr7_19588128_R Primer3: not found at this Tm N.d. 0.47
mm4_intergenic_Rassf5|Ikbke_chr1_131251282_F TCGTCGGCAGCGTCCTCTCTGGCCACTCTCGTTC 59.8 0.45
mm4_intergenic_Rassf5|Ikbke_chr1_131251282_R GTCTCGTGGGCTCGGACTGCCTTTTAGAGCCTTGGT 59.5 0.45
mm4_intergenic_Wnt11/Gm8398|Uvrag_chr7_98867132_F TCGTCGGCAGCGTCACAGTGGCTGGAAGGATTGG 59.9 0.45
mm4_intergenic_Wnt11/Gm8398|Uvrag_chr7_98867132_R GTCTCGTGGGCTCGGCCTGGTAGGCTCTGGTGTTC 59.7 0.45
mm4_intergenic_Sorcs2|mmu-mir-7689_chr5_36286599_F TCGTCGGCAGCGTCGGGTAGAAGCACCATGCCTT 60.0 0.44
mm4_intergenic_Sorcs2|mmu-mir-7689_chr5_36286599_R GTCTCGTGGGCTCGGGCTTGTCATTCGTGGGACCT 60.3 0.44
mm2_intron_Sorl1_chr9_41973188_F Primer3: not found at this Tm N.d. 0.44
mm2_intron_Sorl1_chr9_41973188_R Primer3: not found at this Tm N.d. 0.44
mm4_intron_Cntn6_chr6_104501774_F Primer3: not found at this Tm N.d. 0.44
mm4_intron_Cntn6_chr6_104501774_R Primer3: not found at this Tm N.d. 0.44
mm4_intergenic_Pitpnb|Mn1_chr5_111408537_F TCGTCGGCAGCGTCGTTGGGGAGGGTGGTTGTAG 59.9 0.43
mm4_intergenic_Pitpnb|Mn1_chr5_111408537_R GTCTCGTGGGCTCGGTTAAATCACAGGGAGCCGGG 59.7 0.43
mm4_intergenic_Gm7700|1110059M19Rik_chrX_44969302_F Primer3: not found at this Tm N.d. 0.43
mm4_intergenic_Gm7700|1110059M19Rik_chrX_44969302_R Primer3: not found at this Tm N.d. 0.43
mm4_intron_Ncoa5_chr2_165022139_F Primer3: not found at this Tm N.d. 0.43
mm4_intron_Ncoa5_chr2_165022139_R Primer3: not found at this Tm N.d. 0.43
mm4_intron_Frs2_chr10_117087868_F TCGTCGGCAGCGTCTGCCACTGCAGTCCATTGTA 59.6 0.41
mm4_intron_Frs2_chr10_117087868_R GTCTCGTGGGCTCGGACCTTCACATACATAGTCCCTTTCT 59.2 0.41
mm4_intron_Epb4.1l1_chr2_156509373_F TCGTCGGCAGCGTCGATGGAGGTATGGCTCAGGC 59.9 0.41
mm4_intron_Epb4.1l1_chr2_156509373_R GTCTCGTGGGCTCGGTACCGGCTGTCTCTTCTGGA 59.9 0.41
mm4_intron_Ncapd2_chr6_125185492_F Primer3: not found at this Tm N.d. 0.41
mm4_intron_Ncapd2_chr6_125185492_R Primer3: not found at this Tm N.d. 0.41
mm4_intergenic_1700061E18Rik|Adtrp_chr13_41802428_F TCGTCGGCAGCGTCACTGCCTTTACAAACGCCCC 61.1 0.40
mm4_intergenic_1700061E18Rik|Adtrp_chr13_41802428_R GTCTCGTGGGCTCGGGCGGGAATTTTGGCAAGAGG 60.1 0.40
mm4_intergenic_Gm23649|Lclat1_chr17_73006000_F Primer3: not found at this Tm N.d. 0.39
mm4_intergenic_Gm23649|Lclat1_chr17_73006000_R Primer3: not found at this Tm N.d. 0.39
mm4_intron_Ebi3_chr17_55953470_F Primer3: not found at this Tm N.d. 0.39
mm4_intron_Ebi3_chr17_55953470_R Primer3: not found at this Tm N.d. 0.39
mm4_intergenic_Papolg/Gm12061|Gm12062_chr11_23914121_F Primer3: not found at this Tm N.d. 0.35
mm4_intergenic_Papolg/Gm12061|Gm12062_chr11_23914121_R Primer3: not found at this Tm N.d. 0.35
mm4_intergenic_Gm5759|Gm8880_chrX_88909403_F Primer3: not found at this Tm N.d. 0.35
mm4_intergenic_Gm5759|Gm8880_chrX_88909403_R Primer3: not found at this Tm N.d. 0.35
mm4_intergenic_Gm22251|Zfp521_chr18_13461463_F TCGTCGGCAGCGTCTGTCTCACCCTTCACTCTTCT 58.0 0.34
mm4_intergenic_Gm22251|Zfp521_chr18_13461463_R GTCTCGTGGGCTCGGGATCACGCAGAGGCACAAAC 59.8 0.34
mm4_intergenic_Gm5909|Gypa_chr8_80149960_F Primer3: not found at this Tm N.d. 0.33
mm4_intergenic_Gm5909|Gypa_chr8_80149960_R Primer3: not found at this Tm N.d. 0.33
mm4_intron_Pura_chr18_36286825_F Primer3: not found at this Tm N.d. 0.32
mm4_intron_Pura_chr18_36286825_R Primer3: not found at this Tm N.d. 0.32
mm4_intergenic_Gm22495|Dtna_chr18_23373074_F Primer3: not found at this Tm N.d. 0.32
mm4_intergenic_Gm22495|Dtna_chr18_23373074_R Primer3: not found at this Tm N.d. 0.32
mm4_intergenic_Ide|Kif11_chr19_37358087_F TCGTCGGCAGCGTCTGCTCAACAAAGGTACAGGAGA 59.2 0.32
mm4_intergenic_Ide|Kif11_chr19_37358087_R GTCTCGTGGGCTCGGACCGGGTGAAGGTGTTACAC 59.8 0.32
mm4_intron_Tbx5_chr5_119845381_F TCGTCGGCAGCGTCGCCAAGTTGGAGCTGTTTGC 60.5 0.32
mm4_intron_Tbx5_chr5_119845381_R GTCTCGTGGGCTCGGAGCAGCACAATGTCACCTTT 58.3 0.32
mm4_intron_Ppil1_chr17_29255818_F Primer3: not found at this Tm N.d. 0.31
mm4_intron_Ppil1_chr17_29255818_R Primer3: not found at this Tm N.d. 0.31
mm4_exon_Plxna1/Gm26811_chr6_89318769_F TCGTCGGCAGCGTCGAAGGGTTCGCCTAGCCATT 60.1 0.31
mm4_exon_Plxna1/Gm26811_chr6_89318769_R GTCTCGTGGGCTCGGGAGTGCCACATCCTTCTGCT 60.0 0.31
mm4_intron_Cacna1e_chr1_154576427_F Primer3: not found at this Tm N.d. 0.31
mm4_intron_Cacna1e_chr1_154576427_R Primer3: not found at this Tm N.d. 0.31
mm4_intron_Cnot6l_chr5_96137478_F Primer3: not found at this Tm N.d. 0.31
mm4_intron_Cnot6l_chr5_96137478_R Primer3: not found at this Tm N.d. 0.31
mm3_intergenic_Itgb5|Umps_chr16_33950777_F Primer3: not found at this Tm N.d. 0.30
mm3_intergenic_Itgb5|Umps_chr16_33950777_R Primer3: not found at this Tm N.d. 0.30
mm4_exon_5830418K08Rik_chr9_15343529_F Primer3: not found at this Tm N.d. 0.30
mm4_exon_5830418K08Rik_chr9_15343529_R Primer3: not found at this Tm N.d. 0.30
mm4_intergenic_Ptgfrn|Gm12486_chr3_101131478_F Primer3: not found at this Tm N.d. 0.29
mm4_intergenic_Ptgfrn|Gm12486_chr3_101131478_R Primer3: not found at this Tm N.d. 0.29
mm3_intergenic_Agpat9|Gm20484_chr5_101050659_F Primer3: not found at this Tm N.d. 0.29
mm3_intergenic_Agpat9|Gm20484_chr5_101050659_R Primer3: not found at this Tm N.d. 0.29
mm4_intergenic_Gm8994|Gm15476_chr6_136359093_F TCGTCGGCAGCGTCTCCAGAGAGGGTGATGTCTGA 59.6 0.29
mm4_intergenic_Gm8994|Gm15476_chr6_136359093_R GTCTCGTGGGCTCGGGCCATTTGCCTAGAGTGGGT 60.0 0.29
mm4_intergenic_Igkv8-21|Igkv6-20_chr6_70316702_F Primer3: not found at this Tm N.d. 0.29
mm4_intergenic_Igkv8-21|Igkv6-20_chr6_70316702_R Primer3: not found at this Tm N.d. 0.29
mm4_intergenic_Olfr1126|Pramel7_chr2_87460842_F Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Olfr1126|Pramel7_chr2_87460842_R Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Ano6|D030018L15Rik_chr15_95986312_F Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Ano6|D030018L15Rik_chr15_95986312_R Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Gm25659|Gm25644_chr19_51067969_F Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Gm25659|Gm25644_chr19_51067969_R Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Gm23041|Nav3_chr10_109486679_F Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Gm23041|Nav3_chr10_109486679_R Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Ryr2|Mtr_chr13_12156201_F Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Ryr2|Mtr_chr13_12156201_R Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Gm26933|Tnfrsf11b_chr15_54161997_F Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Gm26933|Tnfrsf11b_chr15_54161997_R Primer3: not found at this Tm N.d. 0.27
mm4_intron_Mkl2_chr16_13266310_F TCGTCGGCAGCGTCGCAAACTGGCCTTGCATCTT 59.6 0.27
mm4_intron_Mkl2_chr16_13266310_R GTCTCGTGGGCTCGGTGGGTTTAACATACACACTTAGCC 58.9 0.27
mm4_intron_Gm14244_chr2_127692881_F Primer3: not found at this Tm N.d. 0.27
mm4_intron_Gm14244_chr2_127692881_R Primer3: not found at this Tm N.d. 0.27
mm4_intron_Zfp787_chr7_6150784_F Primer3: not found at this Tm N.d. 0.26
mm4_intron_Zfp787_chr7_6150784_R Primer3: not found at this Tm N.d. 0.26
mm4_intergenic_Nnmt|Zbtb16_chr9_48640697_F TCGTCGGCAGCGTCATAGGTGACATAAAAGCAGAGAGA 57.2 0.26
mm4_intergenic_Nnmt|Zbtb16_chr9_48640697_R GTCTCGTGGGCTCGGTCATCACACTTTGCTCATGGC 59.1 0.26
mm4_intron_Ankrd12_chr17_65988425_F Primer3: not found at this Tm N.d. 0.26
mm4_intron_Ankrd12_chr17_65988425_R Primer3: not found at this Tm N.d. 0.26
mm4_intergenic_Olfr372|Olfr373_chr8_72079927_F Primer3: not found at this Tm N.d. 0.26
mm4_intergenic_Olfr372|Olfr373_chr8_72079927_R Primer3: not found at this Tm N.d. 0.26
mm4_intron_Ap3b1_chr13_94372443_F Primer3: not found at this Tm N.d. 0.26
mm4_intron_Ap3b1_chr13_94372443_R Primer3: not found at this Tm N.d. 0.26
mm4_exon_Gadd45a_chr6_67035486_F Primer3: not found at this Tm N.d. 0.26
mm4_exon_Gadd45a_chr6_67035486_R Primer3: not found at this Tm N.d. 0.26
mm3_intron_Fut9_chr4_25787434_F Primer3: not found at this Tm N.d. 0.26
mm3_intron_Fut9_chr4_25787434_R Primer3: not found at this Tm N.d. 0.26
mm4_intergenic_Ucn3|Gm22460_chr13_3947833_F TCGTCGGCAGCGTCCTCTCCTCTCTTGAAGCCAGAC 59.8 0.26
mm4_intergenic_Ucn3|Gm22460_chr13_3947833_R GTCTCGTGGGCTCGGAGTCCTGTCAGCCAATGGAA 58.9 0.26
mm4_exon_Krt23_chr11_99478144_F Primer3: not found at this Tm N.d. 0.26
mm4_exon_Krt23_chr11_99478144_R Primer3: not found at this Tm N.d. 0.26
mm4_intron_Ttc23l_chr15_10555307_F TCGTCGGCAGCGTCTCTCTCACCAAACAACACCCC 60.1 0.25
mm4_intron_Ttc23l_chr15_10555307_R GTCTCGTGGGCTCGGGTGTGATTCAGCCTCAGCCT 60.0 0.25
mm4_intron_Wdr19_chr5_65248725_F TCGTCGGCAGCGTCAGAAAGTTGTTTGATCTTCAGCCC 59.7 0.25
mm4_intron_Wdr19_chr5_65248725_R GTCTCGTGGGCTCGGCCTGGCCCACCTGTTTCATA 59.6 0.25
mm4_intergenic_Gm25144|Gm23147_chr3_6023392_F Primer3: not found at this Tm N.d. 0.25
mm4_intergenic_Gm25144|Gm23147_chr3_6023392_R Primer3: not found at this Tm N.d. 0.25
mm4_intergenic_Tas1r2|Pax7_chr4_139710613_F TCGTCGGCAGCGTCAAGGCAACAAAGGACCCCAA 60.0 0.25
mm4_intergenic_Tas1r2|Pax7_chr4_139710613_R GTCTCGTGGGCTCGGCTGTCACCCATTACCCACCC 60.0 0.25
mm4_intergenic_Rprl2|Gm26354_chr3_22261831_F Primer3: not found at this Tm N.d. 0.25
mm4_intergenic_Rprl2|Gm26354_chr3_22261831_R Primer3: not found at this Tm N.d. 0.25
mm4_intron_Draxin_chr4_148110382_F Primer3: not found at this Tm N.d. 0.24
mm4_intron_Draxin_chr4_148110382_R Primer3: not found at this Tm N.d. 0.24
mm4_exon_Bpifb1_chr2_154213445_F Primer3: not found at this Tm N.d. 0.24
mm4_exon_Bpifb1_chr2_154213445_R Primer3: not found at this Tm N.d. 0.24
mm4_intron_Lasp1_chr11_97808233_F TCGTCGGCAGCGTCGGGCTCACACAAACCCTGAT 60.2 0.23
mm4_intron_Lasp1_chr11_97808233_R GTCTCGTGGGCTCGGCTAAAGCAGTCCAGCACCCA 59.9 0.23
mm4_intergenic_Gm24728|Lmo4_chr3_144155557_F Primer3: not found at this Tm N.d. 0.23
mm4_intergenic_Gm24728|Lmo4_chr3_144155557_R Primer3: not found at this Tm N.d. 0.23
mm3_intergenic_Atp1a3|Grik5_chr7_25008253_F Primer3: not found at this Tm N.d. 0.23
mm3_intergenic_Atp1a3|Grik5_chr7_25008253_R Primer3: not found at this Tm N.d. 0.23
mm4_intron_Coq10b_chr1_55058722_F Primer3: not found at this Tm N.d. 0.23
mm4_intron_Coq10b_chr1_55058722_R Primer3: not found at this Tm N.d. 0.23
mm3_intron_Sufu_chr19_46447210_F Primer3: not found at this Tm N.d. 0.23
mm3_intron_Sufu_chr19_46447210_R Primer3: not found at this Tm N.d. 0.23
mm4_intergenic_Gm21608|Gm21637_chrX_31760716_F Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm21608|Gm21637_chrX_31760716_R Primer3: not found at this Tm N.d. 0.22
mm4_intron_Car5a_chr8_121935137_F Primer3: not found at this Tm N.d. 0.22
mm4_intron_Car5a_chr8_121935137_R Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm16160|Ngf_chr3_102310566_F TCGTCGGCAGCGTCCCCCAAGGAACCTATGGCAG 60.1 0.22
mm4_intergenic_Gm16160|Ngf_chr3_102310566_R GTCTCGTGGGCTCGGTTAGGATGCCTCACAGCTGC 60.1 0.22
mm4_intron_Msi2_chr11_88399715_F Primer3: not found at this Tm N.d. 0.22
mm4_intron_Msi2_chr11_88399715_R Primer3: not found at this Tm N.d. 0.22
mm3_intron_Ubr4_chr4_139444018_F Primer3: not found at this Tm N.d. 0.22
mm3_intron_Ubr4_chr4_139444018_R Primer3: not found at this Tm N.d. 0.22
mm4_intron_Susd4_chr1_182834710_F Primer3: not found at this Tm N.d. 0.22
mm4_intron_Susd4_chr1_182834710_R Primer3: not found at this Tm N.d. 0.22
mm4_exon_Slc7a4/P2rx6_chr16_17573745_F Primer3: not found at this Tm N.d. 0.22
mm4_exon_Slc7a4/P2rx6_chr16_17573745_R Primer3: not found at this Tm N.d. 0.22
mm2_intergenic_E030044B06Rik|mmu-mir-8092/Zfp518a_chr19_40874236_F Primer3: not found at this Tm N.d. 0.22
mm2_intergenic_E030044B06Rik|mmu-mir-8092/Zfp518a_chr19_40874236_R Primer3: not found at this Tm N.d. 0.22
mm4_intron_Col1a1_chr11_94936877_F TCGTCGGCAGCGTCAAAGGCTGCGGGATGATTCA 60.0 0.22
mm4_intron_Col1a1_chr11_94936877_R GTCTCGTGGGCTCGGTTTCTCATCCAGCAACCCGC 60.9 0.22
mm3_intron_Dohh_chr10_81386574_F Primer3: not found at this Tm N.d. 0.22
mm3_intron_Dohh_chr10_81386574_R Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm22112|Rhbdd1_chr1_82440483_F Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm22112|Rhbdd1_chr1_82440483_R Primer3: not found at this Tm N.d. 0.22
mm4_exon_Rnf207_chr4_152314955_F TCGTCGGCAGCGTCGAACATGCAGCCCACTTTGG 60.0 0.22
mm4_exon_Rnf207_chr4_152314955_R GTCTCGTGGGCTCGGCCTCCCACCCTTGACCTCTA 59.9 0.22
mm4_intergenic_Ogfod2|Arl6ip4_chr5_124115747_F Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Ogfod2|Arl6ip4_chr5_124115747_R Primer3: not found at this Tm N.d. 0.22
mm4_exon_Ubn2/mmu-mir-7670_chr6_38502285_F TCGTCGGCAGCGTCTGGAGGCCAAAGTAAAGGGG 59.5 0.21
mm4_exon_Ubn2/mmu-mir-7670_chr6_38502285_R GTCTCGTGGGCTCGGGACTTCCCATCAGGTCGGTC 59.8 0.21
mm4_exon_Hes7_chr11_69122123_F Primer3: not found at this Tm N.d. 0.21
mm4_exon_Hes7_chr11_69122123_R Primer3: not found at this Tm N.d. 0.21
mm4_intergenic_Usp10/Gm20388|Usp10_chr8_119924880_F Primer3: not found at this Tm N.d. 0.21
mm4_intergenic_Usp10/Gm20388|Usp10_chr8_119924880_R Primer3: not found at this Tm N.d. 0.21
mm4_intron_Rnf43_chr11_87722612_F Primer3: not found at this Tm N.d. 0.21
mm4_intron_Rnf43_chr11_87722612_R Primer3: not found at this Tm N.d. 0.21
mm4_intergenic_Lekr1|Ccnl1_chr3_65889043_F TCGTCGGCAGCGTCCCCCTCACCAACACAGAGTT 59.5 0.21
mm4_intergenic_Lekr1|Ccnl1_chr3_65889043_R GTCTCGTGGGCTCGGAGGGCTGTCCTGTGACTACT 59.8 0.21
mm3_exon_Ece1_chr4_137963007_F TCGTCGGCAGCGTCAAAAGGGAAGGAGCTGCAGC 60.8 0.20
mm3_exon_Ece1_chr4_137963007_R GTCTCGTGGGCTCGGGTGGTGAGGCTCCATCCATC 60.1 0.20
mm3_intron_Rai14_chr15_10628116_F TCGTCGGCAGCGTCCTCCAAGTTCCTGAGCAGCT 59.6 0.20
mm3_intron_Rai14_chr15_10628116_R GTCTCGTGGGCTCGGAGTTACGTACAGTATGCGATTGC 59.2 0.20
mm4_intergenic_Cmklr1|1700069L16Rik_chr5_113684519_F Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Cmklr1|1700069L16Rik_chr5_113684519_R Primer3: not found at this Tm N.d. 0.20
mm4_intron_Apaf1_chr10_91072025_F TCGTCGGCAGCGTCCTATGGGCACAAGAGGGAGC 60.1 0.20
mm4_intron_Apaf1_chr10_91072025_R GTCTCGTGGGCTCGGTGTCAAAATAGAACGAGACCTCT 57.2 0.20
mm3_intron_Lphn1_chr8_83908438_F Primer3: not found at this Tm N.d. 0.20
mm3_intron_Lphn1_chr8_83908438_R Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Zfp746|Gm16630_chr6_48115083_F Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Zfp746|Gm16630_chr6_48115083_R Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Tbc1d22a|Gm23416_chr15_86593355_F Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Tbc1d22a|Gm23416_chr15_86593355_R Primer3: not found at this Tm N.d. 0.20
mm4_intron_Pax7_chr4_139758400_F TCGTCGGCAGCGTCTGCCAGGCTTGCCTAATGAA 59.9 0.19
mm4_intron_Pax7_chr4_139758400_R GTCTCGTGGGCTCGGCTCGCTCCTCAGACTAGGGT 60.1 0.19
mm4_intron_Ctdspl_chr9_118975386_F TCGTCGGCAGCGTCGCATGGAAGGGCTCTTTCCT 60.0 0.19
mm4_intron_Ctdspl_chr9_118975386_R GTCTCGTGGGCTCGGGCAGCAGGTACAGGCAAGTA 60.0 0.19
mm4_intergenic_Gm15170|Gm8662_chrX_158236317_F TCGTCGGCAGCGTCACCAACTTGCCCAGACTTCC 60.1 0.19
mm4_intergenic_Gm15170|Gm8662_chrX_158236317_R GTCTCGTGGGCTCGGTATCAGTGTGGGAGGGAGGG 60.0 0.19
mm4_intron_Spred2_chr11_19958931_F Primer3: not found at this Tm N.d. 0.19
mm4_intron_Spred2_chr11_19958931_R Primer3: not found at this Tm N.d. 0.19
mm4_intron_Eya4_chr10_23147297_F TCGTCGGCAGCGTCGTGGAGGGCATTGGACAGTA 59.3 0.19
mm4_intron_Eya4_chr10_23147297_R GTCTCGTGGGCTCGGGGCATCAGTGAGTGCTCAGT 60.0 0.19
mm4_intron_Sdk2_chr11_114038028_F TCGTCGGCAGCGTCGACAAAGAGGGACCTGCCAG 60.3 0.19
mm4_intron_Sdk2_chr11_114038028_R GTCTCGTGGGCTCGGATGGCTGGTTGAGTGGTTCG 60.6 0.19
mm4_intergenic_Glra3|Hpgd_chr8_56158479_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Glra3|Hpgd_chr8_56158479_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Tas1r2|Pax7_chr4_139688018_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Tas1r2|Pax7_chr4_139688018_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Fst|Gm25950_chr13_114488796_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Fst|Gm25950_chr13_114488796_R Primer3: not found at this Tm N.d. 0.19
mm4_intron_Uck2_chr1_167280615_F Primer3: not found at this Tm N.d. 0.19
mm4_intron_Uck2_chr1_167280615_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Tacc1|Gm10689_chr8_25233145_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Tacc1|Gm10689_chr8_25233145_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm7030|Gm19684/Gm7030_chr17_36128318_F TCGTCGGCAGCGTCTCCATCCTGAAACAGACTCTGA 58.4 0.19
mm4_intergenic_Gm7030|Gm19684/Gm7030_chr17_36128318_R GTCTCGTGGGCTCGGGCCTTTGTCTGCCTCAGGAT 60.0 0.19
mm4_intergenic_Tcerg1l|Mapk1ip1_chr7_138678887_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Tcerg1l|Mapk1ip1_chr7_138678887_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_n-R5s96|Cldn24_chr8_47741534_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_n-R5s96|Cldn24_chr8_47741534_R Primer3: not found at this Tm N.d. 0.19
mm4_intron_Pld5_chr1_175967418_F Primer3: not found at this Tm N.d. 0.19
mm4_intron_Pld5_chr1_175967418_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm5457|Gm5087_chr14_13031128_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm5457|Gm5087_chr14_13031128_R Primer3: not found at this Tm N.d. 0.19
mm4_intron_Celf2_chr2_6707389_F Primer3: not found at this Tm N.d. 0.18
mm4_intron_Celf2_chr2_6707389_R Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_Gm23593|Cryl1_chr14_57346056_F Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_Gm23593|Cryl1_chr14_57346056_R Primer3: not found at this Tm N.d. 0.18
mm4_intron_Fam53b_chr7_132809281_F TCGTCGGCAGCGTCTACCAACACGACCTGCTGTC 59.9 0.18
mm4_intron_Fam53b_chr7_132809281_R GTCTCGTGGGCTCGGTGTGGCCAGATCTTGCTAGG 59.4 0.18
mm4_intergenic_Lep|Gm25589_chr6_29104940_F TCGTCGGCAGCGTCGATTTTCAGCAAGCCCAAAGC 58.9 0.18
mm4_intergenic_Lep|Gm25589_chr6_29104940_R GTCTCGTGGGCTCGGTCCTCCTCCCCACTCATCTG 60.0 0.18
mm4_intron_Gse1_chr8_120346087_F TCGTCGGCAGCGTCTGCTACATTGGGGATGCTGG 60.1 0.18
mm4_intron_Gse1_chr8_120346087_R GTCTCGTGGGCTCGGCCCCACTCATCATATCCCAGG 59.3 0.18
mm4_intergenic_Dmrta2|Elavl4_chr4_110018249_F TCGTCGGCAGCGTCGCTTCCCAAGTAGACCGGAC 60.1 0.18
mm4_intergenic_Dmrta2|Elavl4_chr4_110018249_R GTCTCGTGGGCTCGGGGTCACTGGAGCTGCTTTCA 60.2 0.18
mm4_intergenic_Atf3|Gm24748_chr1_191196727_F TCGTCGGCAGCGTCAGCTCCTACAAGGGTGTGGA 60.1 0.18
mm4_intergenic_Atf3|Gm24748_chr1_191196727_R GTCTCGTGGGCTCGGGACCTCAAGTGGCTTTCCCA 59.8 0.18
mm4_intergenic_Gm25130|Gm22970_chr14_99492801_F TCGTCGGCAGCGTCTCCAGAGATTCATGTAGCAGCA 59.2 0.17
mm4_intergenic_Gm25130|Gm22970_chr14_99492801_R GTCTCGTGGGCTCGGCCCCAAGGGAAGAGTTCACTA 58.7 0.17
mm4_intron_Bcl7c_chr7_127704687_F TCGTCGGCAGCGTCCCAGAAGTGTGGGCCTATGG 60.1 0.17
mm4_intron_Bcl7c_chr7_127704687_R GTCTCGTGGGCTCGGGTCCCCAGTTCACTCACAGG 59.9 0.17
mm4_intron_Slco4a1_chr2_180458873_F Primer3: not found at this Tm N.d. 0.17
mm4_intron_Slco4a1_chr2_180458873_R Primer3: not found at this Tm N.d. 0.17
mm3_intron_Slc22a5_chr11_53887777_F Primer3: not found at this Tm N.d. 0.17
mm3_intron_Slc22a5_chr11_53887777_R Primer3: not found at this Tm N.d. 0.17
mm4_exon_Dlg4_chr11_70018691_F Primer3: not found at this Tm N.d. 0.16
mm4_exon_Dlg4_chr11_70018691_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_4930430O22Rik|Msi1_chr5_115436908_F TCGTCGGCAGCGTCCACTGGTCAGCAGGCCTC 60.0 0.16
mm4_intergenic_4930430O22Rik|Msi1_chr5_115436908_R GTCTCGTGGGCTCGGGGCTTTGGTCTCCATGGGAA 59.9 0.16
mm2_exon_Gm26794/Kcnj3_chr2_55436426_F TCGTCGGCAGCGTCGCCTGTTCTCTGTCACTGGG 60.3 0.16
mm2_exon_Gm26794/Kcnj3_chr2_55436426_R GTCTCGTGGGCTCGGGAGTTTTCACGCGCTCCAC 59.7 0.16
mm4_intergenic_Cd47|Gm8824_chr16_50027382_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Cd47|Gm8824_chr16_50027382_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Ifne|Mir31_chr4_88907329_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Ifne|Mir31_chr4_88907329_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Clec14a|Gm17529_chr12_58814220_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Clec14a|Gm17529_chr12_58814220_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm22594|1110002J07Rik_chr10_66698625_F TCGTCGGCAGCGTCTCCCAAGACACCTCTGAGAGA 59.5 0.16
mm4_intergenic_Gm22594|1110002J07Rik_chr10_66698625_R GTCTCGTGGGCTCGGGCACTTTGCACATAGGCTGG 59.8 0.16
mm4_intron_Ccdc115_chr1_34439006_F TCGTCGGCAGCGTCGGGAAGTTGGATCTCTGGCC 60.1 0.16
mm4_intron_Ccdc115_chr1_34439006_R GTCTCGTGGGCTCGGGTATGGAGCCTCAGGTCTGC 59.8 0.16
mm4_exon_Prph2_chr17_46923853_F TCGTCGGCAGCGTCGGGCTCTGTCCAAGTGTGAG 60.3 0.16
mm4_exon_Prph2_chr17_46923853_R GTCTCGTGGGCTCGGAGTGATGGTTGGGATGCAGA 59.0 0.16
mm4_intron_Nav3_chr10_109832298_F TCGTCGGCAGCGTCAACCAGTTGGAAATGCGCAC 59.9 0.15
mm4_intron_Nav3_chr10_109832298_R GTCTCGTGGGCTCGGTGTGTTTCGCGGCAAAGAAG 59.9 0.15
mm4_intergenic_Gm24963|Gm10742_chr3_17458729_F Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Gm24963|Gm10742_chr3_17458729_R Primer3: not found at this Tm N.d. 0.15
mm4_intron_Hsd3b1_chr3_98859406_F Primer3: not found at this Tm N.d. 0.15
mm4_intron_Hsd3b1_chr3_98859406_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_4930583I09Rik|Gm25344_chr17_64923299_F Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_4930583I09Rik|Gm25344_chr17_64923299_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Ano6|D030018L15Rik_chr15_96002927_F TCGTCGGCAGCGTCACCCCATCCCTTCCCCATAA 59.9 0.15
mm4_intergenic_Ano6|D030018L15Rik_chr15_96002927_R GTCTCGTGGGCTCGGAGGGTGCTCAAAAGGACAGG 59.8 0.15
mm4_exon_Gps1_chr11_120787453_F Primer3: not found at this Tm N.d. 0.15
mm4_exon_Gps1_chr11_120787453_R Primer3: not found at this Tm N.d. 0.15
mm3_intergenic_Phf15|Gm26551_chr11_51891396_F Primer3: not found at this Tm N.d. 0.15
mm3_intergenic_Phf15|Gm26551_chr11_51891396_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Fbxl17|A930002H24Rik_chr17_63529956_F TCGTCGGCAGCGTCTCCATCCGGATTCCCTCCTT 60.0 0.15
mm4_intergenic_Fbxl17|A930002H24Rik_chr17_63529956_R GTCTCGTGGGCTCGGTCATAGCAGCATAGACGCGT 59.3 0.15
mm4_exon_Pnkd_chr1_74286138_F TCGTCGGCAGCGTCTCTGAAATGCGGGTGGAGAG 59.7 0.15
mm4_exon_Pnkd_chr1_74286138_R GTCTCGTGGGCTCGGTGCTCCACAGAAAAGCCACT 59.8 0.15
mm4_intergenic_Phka2|Ppef1_chrX_160611421_F Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Phka2|Ppef1_chrX_160611421_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Cmtm6|Cmtm7_chr9_114750404_F Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Cmtm6|Cmtm7_chr9_114750404_R Primer3: not found at this Tm N.d. 0.15
mm4_intron_Gm13816_chr2_92756246_F Primer3: not found at this Tm N.d. 0.15
mm4_intron_Gm13816_chr2_92756246_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Gm11914|Tpm3-rs2_chr4_27943463_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Gm11914|Tpm3-rs2_chr4_27943463_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Sgpp1|Syne2_chr12_75812208_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Sgpp1|Syne2_chr12_75812208_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Pgap1|Ankrd44_chr1_54615485_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Pgap1|Ankrd44_chr1_54615485_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Lphn3_chr5_81365689_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Lphn3_chr5_81365689_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_D630003M21Rik_chr2_158221637_F TCGTCGGCAGCGTCCTGAGCTGTGTGGTGGGAAT 59.9 0.14
mm4_intron_D630003M21Rik_chr2_158221637_R GTCTCGTGGGCTCGGACCCTTCCTGTTCTACCGGA 59.8 0.14
mm4_intron_Ddr2_chr1_170044847_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Ddr2_chr1_170044847_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_4930596D02Rik|Gm7853_chr14_36058076_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_4930596D02Rik|Gm7853_chr14_36058076_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Tfap2c|Gm22773_chr2_172759155_F TCGTCGGCAGCGTCTGAGAAGCTGCGTGAGACAG 60.0 0.14
mm4_intergenic_Tfap2c|Gm22773_chr2_172759155_R GTCTCGTGGGCTCGGCACTTTCTCTCCCTCCGCTC 59.8 0.14
mm4_intergenic_Cd274|Pdcd1lg2_chr19_29408112_F TCGTCGGCAGCGTCCTCTGACAACCCCTTCACCC 59.9 0.14
mm4_intergenic_Cd274|Pdcd1lg2_chr19_29408112_R GTCTCGTGGGCTCGGGCTCTGACTCCTGGCCAAAA 60.2 0.14
mm4_intergenic_Pdcd1|Gm23389_chr1_94551731_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Pdcd1|Gm23389_chr1_94551731_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Lrpap1|Adra2c_chr5_35236251_F TCGTCGGCAGCGTCAAGCGTCTGAACTGCACAGA 59.8 0.14
mm4_intergenic_Lrpap1|Adra2c_chr5_35236251_R GTCTCGTGGGCTCGGAAGAGCCACTGTGAGAAGGC 59.9 0.14
mm4_intergenic_Pbx1|Pbx1/AC096625.1_chr1_168375024_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Pbx1|Pbx1/AC096625.1_chr1_168375024_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Gm24445|Spg7_chr8_123045034_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Gm24445|Spg7_chr8_123045034_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Phkb|Gm23904_chr8_86068594_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Phkb|Gm23904_chr8_86068594_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Ano10_chr9_122285436_F TCGTCGGCAGCGTCGCAGATCAGGGTTCCACCTC 60.1 0.14
mm4_intron_Ano10_chr9_122285436_R GTCTCGTGGGCTCGGCCCTCCTCTGAGTCCGTGT 60.3 0.14
mm3_intergenic_Elac1|Me2_chr18_73760798_F Primer3: not found at this Tm N.d. 0.14
mm3_intergenic_Elac1|Me2_chr18_73760798_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Ttll5_chr12_85954162_F TCGTCGGCAGCGTCGGTGTTTGCTGTGAGGGGAT 60.2 0.14
mm4_intron_Ttll5_chr12_85954162_R GTCTCGTGGGCTCGGGCACAAAGGGCAGAATCTGG 59.4 0.14
mm4_intergenic_E430024P14Rik|Tagap_chr17_7915785_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_E430024P14Rik|Tagap_chr17_7915785_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Mical3|Pex26_chr6_121182548_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Mical3|Pex26_chr6_121182548_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Ust_chr10_8409203_F TCGTCGGCAGCGTCGCAAACTCCCCTCATGCTCT 60.0 0.13
mm4_intron_Ust_chr10_8409203_R GTCTCGTGGGCTCGGTGGCCATCAAACCCACTTCT 59.5 0.13
mm4_intron_Col23a1_chr11_51459630_F TCGTCGGCAGCGTCGACTGAGGGCTCTTTGGCAT 60.0 0.13
mm4_intron_Col23a1_chr11_51459630_R GTCTCGTGGGCTCGGAGCAACCCTGTCCTTCACTG 59.8 0.13
mm4_intron_Rbms3_chr9_117176135_F Primer3: not found at this Tm N.d. 0.13
mm4_intron_Rbms3_chr9_117176135_R Primer3: not found at this Tm N.d. 0.13
mm4_intron_Sntb1_chr15_55785610_F TCGTCGGCAGCGTCAGCCTCAGAGAACCAGGACT 59.8 0.13
mm4_intron_Sntb1_chr15_55785610_R GTCTCGTGGGCTCGGAGTTCACTGTCCTTTCATGACT 57.3 0.13
mm4_intron_Hpcal1_chr12_17733489_F Primer3: not found at this Tm N.d. 0.13
mm4_intron_Hpcal1_chr12_17733489_R Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Trpm5|Kcnq1_chr7_143100647_F TCGTCGGCAGCGTCCCTTACTGCTGCCTGTTCCA 59.9 0.13
mm4_intergenic_Trpm5|Kcnq1_chr7_143100647_R GTCTCGTGGGCTCGGGAGCTTCCCACTGTGAACCA 59.8 0.13
mm4_intergenic_Ear-ps3|Ang4_chr14_51754777_F Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Ear-ps3|Ang4_chr14_51754777_R Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Sorcs3|AC116451.1_chr19_49143698_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Sorcs3|AC116451.1_chr19_49143698_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm22342|Gm24584_chr3_83662285_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm22342|Gm24584_chr3_83662285_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm14947|Gm14940_chrX_122558022_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm14947|Gm14940_chrX_122558022_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_1700041M05Rik|Grik3_chr4_125484833_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_1700041M05Rik|Grik3_chr4_125484833_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Cdh23|4632428N05Rik_chr10_60341449_F TCGTCGGCAGCGTCTGGTGCATCATCATGGCTGT 60.0 0.12
mm4_intergenic_Cdh23|4632428N05Rik_chr10_60341449_R GTCTCGTGGGCTCGGTCCCTGCAGGAGTAGTGTGG 60.9 0.12
mm4_intron_Dgkb_chr12_38445347_F Primer3: not found at this Tm N.d. 0.12
mm4_intron_Dgkb_chr12_38445347_R Primer3: not found at this Tm N.d. 0.12
mm4_exon_Cpa1_chr6_30639960_F TCGTCGGCAGCGTCCTCCTTGTGCCTTTACGGGT 59.9 0.12
mm4_exon_Cpa1_chr6_30639960_R GTCTCGTGGGCTCGGCTTCGTCGGTGGCAGAGATT 60.1 0.12
mm4_intergenic_Gm20696/Foxp1|Gm20705_chr6_99382637_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm20696/Foxp1|Gm20705_chr6_99382637_R Primer3: not found at this Tm N.d. 0.12
mm3_intergenic_Olfr1008|Olfr1009_chr2_85717707_F Primer3: not found at this Tm N.d. 0.12
mm3_intergenic_Olfr1008|Olfr1009_chr2_85717707_R Primer3: not found at this Tm N.d. 0.12
mm4_intron_Atxn1_chr13_45818684_F Primer3: not found at this Tm N.d. 0.12
mm4_intron_Atxn1_chr13_45818684_R Primer3: not found at this Tm N.d. 0.12
mm4_exon_Gm7568_chr1_16254029_F Primer3: not found at this Tm N.d. 0.12
mm4_exon_Gm7568_chr1_16254029_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm16477|Gpr26_chr7_131728222_F TCGTCGGCAGCGTCCATGAACCTGGAAGGCTGGG 60.6 0.12
mm4_intergenic_Gm16477|Gpr26_chr7_131728222_R GTCTCGTGGGCTCGGGGATGGCATTAGCTCCCACT 59.5 0.12
mm4_intergenic_Olfr295|Olfr294_chr7_86611512_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Olfr295|Olfr294_chr7_86611512_R Primer3: not found at this Tm N.d. 0.12
mm4_intron_Kitl_chr10_100020730_F TCGTCGGCAGCGTCCCTTTCGGGGCTGTTGTGTA 60.2 0.11
mm4_intron_Kitl_chr10_100020730_R GTCTCGTGGGCTCGGTCAGCAAGGCACGAGTCAAT 59.9 0.11
mm4_intergenic_Gm15387|Bai1_chr15_74483493_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm15387|Bai1_chr15_74483493_R Primer3: not found at this Tm N.d. 0.11
mm4_exon_Mal_chr2_127656191_F Primer3: not found at this Tm N.d. 0.11
mm4_exon_Mal_chr2_127656191_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Cdc25a|Map4_chr9_109930806_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Cdc25a|Map4_chr9_109930806_R Primer3: not found at this Tm N.d. 0.11
mm4_intron_Setd7_chr3_51549542_F Primer3: not found at this Tm N.d. 0.11
mm4_intron_Setd7_chr3_51549542_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm24749|Gm5277_chr3_78888712_F TCGTCGGCAGCGTCGCAGGTCAGGGCAACTTGTA 60.2 0.11
mm4_intergenic_Gm24749|Gm5277_chr3_78888712_R GTCTCGTGGGCTCGGATGAGCACCATCCAATGCCT 59.7 0.11
mm4_intron_Abi3bp_chr16_56540138_F TCGTCGGCAGCGTCAGGAGTCCAGCCTGGTCTAT 59.3 0.11
mm4_intron_Abi3bp_chr16_56540138_R GTCTCGTGGGCTCGGACTTCTGGACTCTAGTGGGCA 60.2 0.11
mm4_intergenic_Gm22597|Gm24514_chr18_55410020_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm22597|Gm24514_chr18_55410020_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Ftl2/Mir692-2a|Grik3_chr4_125573821_F TCGTCGGCAGCGTCTCTATCTCCACCCTGCCTCC 60.1 0.11
mm4_intergenic_Ftl2/Mir692-2a|Grik3_chr4_125573821_R GTCTCGTGGGCTCGGGCTGAGATAGCGCCTTGAGA 59.6 0.11
mm3_exon_Axin2_chr11_108950127_F TCGTCGGCAGCGTCTCTGCTTGTCACAGACGTCC 59.9 0.11
mm3_exon_Axin2_chr11_108950127_R GTCTCGTGGGCTCGGTCTGGGACTACACGTACGGT 59.9 0.11
mm4_intergenic_Gm16314|Gnb1l_chr16_18503817_F TCGTCGGCAGCGTCTCTCACTATACATGGTTATGCTGA 57.0 0.10
mm4_intergenic_Gm16314|Gnb1l_chr16_18503817_R GTCTCGTGGGCTCGGTTGAGACTCAATCTGCGAGAGC 60.4 0.10
mm4_intergenic_Mir759|Pcdh8_chr14_79757524_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Mir759|Pcdh8_chr14_79757524_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Prex1|Gm23152_chr2_166652164_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Prex1|Gm23152_chr2_166652164_R Primer3: not found at this Tm N.d. 0.10
mm4_intron_Reln_chr5_21900573_F Primer3: not found at this Tm N.d. 0.10
mm4_intron_Reln_chr5_21900573_R Primer3: not found at this Tm N.d. 0.10
mm4_intron_Gbf1_chr19_46162579_F Primer3: not found at this Tm N.d. 0.10
mm4_intron_Gbf1_chr19_46162579_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm17590/Cdk6|Cdk6_chr5_3496971_F TCGTCGGCAGCGTCTGGTAGGACCCAGAGACAAAGA 60.1 0.10
mm4_intergenic_Gm17590/Cdk6|Cdk6_chr5_3496971_R GTCTCGTGGGCTCGGAGGCTGGCTTAACCGAATTCA 59.9 0.10
mm4_exon_Plcg2_chr8_117634257_F Primer3: not found at this Tm N.d. 0.10
mm4_exon_Plcg2_chr8_117634257_R Primer3: not found at this Tm N.d. 0.10
mm4_intron_Dars_chr1_128408915_F Primer3: not found at this Tm N.d. 0.10
mm4_intron_Dars_chr1_128408915_R Primer3: not found at this Tm N.d. 0.10
mm4_intron_Cntnap2_chr6_47156485_F TCGTCGGCAGCGTCAGAACTTTGGGTGAGATGACTC 57.7 0.10
mm4_intron_Cntnap2_chr6_47156485_R GTCTCGTGGGCTCGGCAGCATCAGAAGGAAGGGCA 60.0 0.10
mm4_intron_Cntnap2_chr6_47137550_F Primer3: not found at this Tm N.d. 0.10
mm4_intron_Cntnap2_chr6_47137550_R Primer3: not found at this Tm N.d. 0.10
mm4_intron_Cntnap2_chr6_47119122_F Primer3: not found at this Tm N.d. 0.10
mm4_intron_Cntnap2_chr6_47119122_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm8765|Gm22199_chr13_50809956_F TCGTCGGCAGCGTCAGAGCTTTGGGTGAGATGACTC 59.7 0.10
mm4_intergenic_Gm8765|Gm22199_chr13_50809956_R GTCTCGTGGGCTCGGTCAGAAGGAAGGGCGTTAGC 59.7 0.10
mm4_intergenic_Gm17611|Gm24300_chr13_49977933_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm17611|Gm24300_chr13_49977933_R Primer3: not found at this Tm N.d. 0.10
mm4_exon_1110032A03Rik_chr9_50763527_F Primer3: not found at this Tm N.d. 0.10
mm4_exon_1110032A03Rik_chr9_50763527_R Primer3: not found at this Tm N.d. 0.10
mm4_intron_C030046E11Rik_chr19_29565661_F TCGTCGGCAGCGTCAACGATGGACACCAGCCATT 59.9 0.10
mm4_intron_C030046E11Rik_chr19_29565661_R GTCTCGTGGGCTCGGTGGAGAGCAACAGATGTCACT 59.0 0.10
mm4_intron_Hoxb3_chr11_96326659_F TCGTCGGCAGCGTCGTCTGTGTTCTGGATCTGGACA 59.7 0.10
mm4_intron_Hoxb3_chr11_96326659_R GTCTCGTGGGCTCGGCGGAAAGTGCTGGAAGCCT 60.3 0.10
mm4_intergenic_Soga2|Gm4705_chr17_66387287_F TCGTCGGCAGCGTCGTCCAGCAGCAGGTACAGAG 60.1 0.10
mm4_intergenic_Soga2|Gm4705_chr17_66387287_R GTCTCGTGGGCTCGGAGCTGGGGTCTCAGTCTTCT 59.8 0.10
mm4_intergenic_Fat3|Gm5611_chr9_16403768_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Fat3|Gm5611_chr9_16403768_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm10451|Mir5135_chr12_76496226_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm10451|Mir5135_chr12_76496226_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Aloxe3|Alox12b_chr11_69152608_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Aloxe3|Alox12b_chr11_69152608_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm11355|Prl_chr13_26923069_F TCGTCGGCAGCGTCGCACAAGCAGGCACTAATCC 59.5 0.09
mm4_intergenic_Gm11355|Prl_chr13_26923069_R GTCTCGTGGGCTCGGTTGCCTTCACTCACTTGCCT 59.8 0.09
mm4_intron_Thsd7b_chr1_129496623_F TCGTCGGCAGCGTCGTGTGTGTTTGTGCACGTGT 60.1 0.09
mm4_intron_Thsd7b_chr1_129496623_R GTCTCGTGGGCTCGGAGGCAAGGTATGATAATTGCTTGG 59.4 0.09
mm4_intron_Wdr25_chr12_108932226_F Primer3: not found at this Tm N.d. 0.09
mm4_intron_Wdr25_chr12_108932226_R Primer3: not found at this Tm N.d. 0.09
mm3_intergenic_Slc28a3|Ntrk2_chr13_58614097_F TCGTCGGCAGCGTCAGGTGCTATCCTGGAGCTCT 59.7 0.09
mm3_intergenic_Slc28a3|Ntrk2_chr13_58614097_R GTCTCGTGGGCTCGGTCTTGCAAGCACACAGACGA 60.1 0.09
mm4_intergenic_Gm10974|Gm23957_chr7_66367737_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm10974|Gm23957_chr7_66367737_R Primer3: not found at this Tm N.d. 0.09
mm4_intron_Mep1a_chr17_43485225_F Primer3: not found at this Tm N.d. 0.09
mm4_intron_Mep1a_chr17_43485225_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_S100a9|Pglyrp4_chr3_90726248_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_S100a9|Pglyrp4_chr3_90726248_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm15405|Gm27039_chr17_92064857_F TCGTCGGCAGCGTCCCCAGCTCAACCTCCCTTTT 59.8 0.09
mm4_intergenic_Gm15405|Gm27039_chr17_92064857_R GTCTCGTGGGCTCGGGACCTTCTCTGCCCTTGGTT 59.5 0.09
mm4_exon_Wsb2_chr5_117365253_F Primer3: not found at this Tm N.d. 0.09
mm4_exon_Wsb2_chr5_117365253_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Cadm1|Nxpe2_chr9_47903207_F TCGTCGGCAGCGTCCGTGTCACCATCGAGCCTTA 59.8 0.09
mm4_intergenic_Cadm1|Nxpe2_chr9_47903207_R GTCTCGTGGGCTCGGGAAGTTGCAGGTAGGCCCTT 59.9 0.09
mm4_intergenic_AU018091|Mir290_chr7_3217736_F TCGTCGGCAGCGTCTCAGAGGAAGCAGGGTGGTA 59.8 0.08
mm4_intergenic_AU018091|Mir290_chr7_3217736_R GTCTCGTGGGCTCGGGAAGTCTCTGAGAGGCGTGG 59.8 0.08
mm4_intron_Zmat2_chr18_36796427_F TCGTCGGCAGCGTCGGCTGAGAGCTTCTTTTAGCC 58.9 0.08
mm4_intron_Zmat2_chr18_36796427_R GTCTCGTGGGCTCGGAGTCATTATAACATCCTCAGCCA 57.1 0.08
mm4_intron_Lamb3_chr1_193303186_F TCGTCGGCAGCGTCTTGAAGCCCTGAGAAGCCTG 59.9 0.08
mm4_intron_Lamb3_chr1_193303186_R GTCTCGTGGGCTCGGGGACATCCCATTGCAGCAGA 60.3 0.08
mm4_intron_Glis3_chr19_28326298_F TCGTCGGCAGCGTCTCCTGTCACTTCCTCGGTTC 59.0 0.08
mm4_intron_Glis3_chr19_28326298_R GTCTCGTGGGCTCGGTCTTCCCTGGACTCCACACT 59.8 0.08
mm4_intron_Ccdc6_chr10_70127949_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Ccdc6_chr10_70127949_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Kalrn|Ropn1_chr16_34640237_F TCGTCGGCAGCGTCTGCTTTTGGTGGGAGGTTTG 58.8 0.08
mm4_intergenic_Kalrn|Ropn1_chr16_34640237_R GTCTCGTGGGCTCGGACCAGGTTCTTATATCAACAGTGGT 59.7 0.08
mm4_intergenic_2610037D02Rik|Arid2_chr15_96286550_F TCGTCGGCAGCGTCTGCTAGCACGATGAAGCCC 60.1 0.08
mm4_intergenic_2610037D02Rik|Arid2_chr15_96286550_R GTCTCGTGGGCTCGGCTGAGAAGCAGGCTCGCTC 60.5 0.08
mm4_intron_Ulk3_chr9_57590082_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Ulk3_chr9_57590082_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Igfbp5|Tnp1_chr1_72877287_F TCGTCGGCAGCGTCAGTCCATTCTCTCTGCCCTCT 59.9 0.08
mm4_intergenic_Igfbp5|Tnp1_chr1_72877287_R GTCTCGTGGGCTCGGTCTCTGAGAGTGCGACCAGA 59.9 0.08
mm4_intergenic_Gm22618|Gm22976_chr5_50435162_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm22618|Gm22976_chr5_50435162_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Mcc|A930012L18Rik/Mcc_chr18_44661606_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Mcc|A930012L18Rik/Mcc_chr18_44661606_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm17384|3110047P20Rik/Gm9954_chr5_63124568_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm17384|3110047P20Rik/Gm9954_chr5_63124568_R Primer3: not found at this Tm N.d. 0.08
mm3_intergenic_Glb1|Ccr4_chr9_114476590_F TCGTCGGCAGCGTCTGTGAGGGATCTAAGCTGTGG 59.1 0.07
mm3_intergenic_Glb1|Ccr4_chr9_114476590_R GTCTCGTGGGCTCGGACACAGTTGCCTAGAGCCAG 59.6 0.07
mm4_intron_Ccser1_chr6_61725678_F TCGTCGGCAGCGTCAGCCATTCACCTTTAAGTTAATTCA 57.2 0.07
mm4_intron_Ccser1_chr6_61725678_R GTCTCGTGGGCTCGGCCCTAGTGCATACATGACAGCT 59.8 0.07
mm4_intergenic_Gm4217|Nup50_chr15_84882399_F TCGTCGGCAGCGTCAAGGGGAAGGAGATGAGGCT 59.9 0.07
mm4_intergenic_Gm4217|Nup50_chr15_84882399_R GTCTCGTGGGCTCGGTGTCCCTACCCCAGAGGATG 60.0 0.07
mm4_intergenic_Nudt4|Mir3058_chr10_95556301_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Nudt4|Mir3058_chr10_95556301_R Primer3: not found at this Tm N.d. 0.07
mm4_intron_Eif4g2_chr7_111079631_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Eif4g2_chr7_111079631_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Pard3|Gm6921_chr8_127518632_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Pard3|Gm6921_chr8_127518632_R Primer3: not found at this Tm N.d. 0.07
mm4_intron_Slc4a5_chr6_83289796_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Slc4a5_chr6_83289796_R Primer3: not found at this Tm N.d. 0.07
mm4_exon_Gm15419/Col4a2_chr8_11399691_F Primer3: not found at this Tm N.d. 0.07
mm4_exon_Gm15419/Col4a2_chr8_11399691_R Primer3: not found at this Tm N.d. 0.07
mm4_intron_Gm15338_chr7_124278781_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Gm15338_chr7_124278781_R Primer3: not found at this Tm N.d. 0.07
mm4_intron_Prkar1b_chr5_139027467_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Prkar1b_chr5_139027467_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_BC017158|Rgs10_chr7_128307280_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_BC017158|Rgs10_chr7_128307280_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Eya4|Rps12_chr10_23362585_F TCGTCGGCAGCGTCTGAGTTGTGTGGCTTGTCCA 59.7 0.07
mm4_intergenic_Eya4|Rps12_chr10_23362585_R GTCTCGTGGGCTCGGTTCTAGGCAGTGACGCAACT 59.3 0.07
mm4_intergenic_Gm1821|Gm15217_chr14_46172698_F TCGTCGGCAGCGTCAATGATGAGGAGTTGGCCGG 60.1 0.07
mm4_intergenic_Gm1821|Gm15217_chr14_46172698_R GTCTCGTGGGCTCGGTGAAGGTCTTCTGCAGGGAG 59.0 0.07
mm4_intergenic_Gm14303|Tfap2c_chr2_172516559_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm14303|Tfap2c_chr2_172516559_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Git2_chr5_114766644_F TCGTCGGCAGCGTCTTGGGGCTGGTTTGGAAACA 60.3 0.06
mm4_intron_Git2_chr5_114766644_R GTCTCGTGGGCTCGGGAGTCCAGCTTTGCCCTTCT 59.9 0.06
mm4_exon_Nsun7_chr5_66294769_F TCGTCGGCAGCGTCGGTGCTCCCTTCCTCTCTTG 59.7 0.06
mm4_exon_Nsun7_chr5_66294769_R GTCTCGTGGGCTCGGACAGTGGGAGAACAGGAGGA 59.8 0.06
mm4_intergenic_Gm24770|CT030684.1_chr14_96967488_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm24770|CT030684.1_chr14_96967488_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Eif3b|Chst12_chr5_140485965_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Eif3b|Chst12_chr5_140485965_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_A330033J07Rik|Id4/A330033J07Rik_chr13_48240778_F TCGTCGGCAGCGTCCTGAGCTGTTTTGCACACCA 59.2 0.06
mm4_intergenic_A330033J07Rik|Id4/A330033J07Rik_chr13_48240778_R GTCTCGTGGGCTCGGGGAAACGTACCTGTTCGGGT 59.9 0.06
mm4_intron_Dmd_chrX_84367181_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Dmd_chrX_84367181_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm22484|Gm23555_chr18_56099535_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm22484|Gm23555_chr18_56099535_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Tmem40_chr6_115742044_F TCGTCGGCAGCGTCTTCCTTCAACAGCAGGCACA 60.1 0.06
mm4_intron_Tmem40_chr6_115742044_R GTCTCGTGGGCTCGGCACACTTCCTAGTCGGGCAG 60.1 0.06
mm4_intron_Exoc2_chr13_30966842_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Exoc2_chr13_30966842_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_9330185C12Rik|Cntnap5a_chr1_114730718_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_9330185C12Rik|Cntnap5a_chr1_114730718_R Primer3: not found at this Tm N.d. 0.06
mm4_exon_Dbndd2_chr2_164486970_F TCGTCGGCAGCGTCACCTAGCTCTGGGAATTGGC 59.4 0.06
mm4_exon_Dbndd2_chr2_164486970_R GTCTCGTGGGCTCGGGACGCCTCTCTTTTCCCCTC 60.1 0.06
mm4_intergenic_Rnd1|Ccdc65_chr15_98696681_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Rnd1|Ccdc65_chr15_98696681_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Olfr721-ps1|Slc4a7_chr14_14591592_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Olfr721-ps1|Slc4a7_chr14_14591592_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Ube3b|Mmab_chr5_114428527_F TCGTCGGCAGCGTCGGACTTGAAAGCCTGGGACA 59.8 0.05
mm4_intergenic_Ube3b|Mmab_chr5_114428527_R GTCTCGTGGGCTCGGGGCTTTCCACCTGGTGAAGT 60.1 0.05
mm4_intron_Snph_chr2_151605690_F TCGTCGGCAGCGTCACTATGCAGGTTTCAGGGCG 60.3 0.05
mm4_intron_Snph_chr2_151605690_R GTCTCGTGGGCTCGGCCCAACTCCTGCCAGCTTAA 59.9 0.05
mm4_intergenic_Col13a1|Gm5424_chr10_62014124_F TCGTCGGCAGCGTCCCCCTGACACAGAAAGCCAA 60.1 0.05
mm4_intergenic_Col13a1|Gm5424_chr10_62014124_R GTCTCGTGGGCTCGGGTCCTTGGAGCCTGTCATCC 60.1 0.05
mm4_intergenic_Trhr2|Gm20681_chr8_122363271_F TCGTCGGCAGCGTCGTCCCAGGGCCAATCTGTAC 60.1 0.05
mm4_intergenic_Trhr2|Gm20681_chr8_122363271_R GTCTCGTGGGCTCGGCAAGCCCAAGAGGACAGTGT 59.8 0.05
mm4_intergenic_Gm7931|Slit2_chr5_47064396_F TCGTCGGCAGCGTCTGTAGTCAGATGATAGGCATTTGC 58.9 0.05
mm4_intergenic_Gm7931|Slit2_chr5_47064396_R GTCTCGTGGGCTCGGAGAAGCTGCAAAGTTTTGGTT 57.1 0.05
mm4_intergenic_Caln1|A330070K13Rik_chr5_130378367_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Caln1|A330070K13Rik_chr5_130378367_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Ofcc1_chr13_40239564_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Ofcc1_chr13_40239564_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm26497|Piezo1_chr8_122548804_F TCGTCGGCAGCGTCATGGGACTAGGGCATCACCT 60.0 0.05
mm4_intergenic_Gm26497|Piezo1_chr8_122548804_R GTCTCGTGGGCTCGGTGGGGTGCTTAGCCTCTTTG 59.9 0.05
mm4_intron_Podxl2_chr6_88869875_F TCGTCGGCAGCGTCCCATCAAGGGACAAAGCCCA 60.2 0.05
mm4_intron_Podxl2_chr6_88869875_R GTCTCGTGGGCTCGGGCACAGAGCATTCAGGGAAT 58.2 0.05
mm4_intergenic_Bcl11b|Setd3_chr12_108088579_F TCGTCGGCAGCGTCCAGAAAAGGGTAGCCAGCCA 59.9 0.05
mm4_intergenic_Bcl11b|Setd3_chr12_108088579_R GTCTCGTGGGCTCGGCCTCCCTGGGTCCTCTTCAT 60.3 0.05
mm4_intergenic_Gm10617|Gm25200_chr8_117826721_F TCGTCGGCAGCGTCGCGACTCCTTTATGGGAAATGT 58.7 0.05
mm4_intergenic_Gm10617|Gm25200_chr8_117826721_R GTCTCGTGGGCTCGGCAGTTCCCAGGAGATGCCAA 59.6 0.05
mm4_intergenic_Tmem200c|Epb4.1l3_chr17_68983121_F TCGTCGGCAGCGTCGGCCAACCCTAGCAAATACTCT 60.0 0.05
mm4_intergenic_Tmem200c|Epb4.1l3_chr17_68983121_R GTCTCGTGGGCTCGGTCATGTACCCCTGCCCAAAC 59.9 0.05
mm4_intergenic_Anapc15-ps|4732465J04Rik_chr10_95790613_F TCGTCGGCAGCGTCAGCCATAGATGAATGTTTCCAGGA 59.8 0.05
mm4_intergenic_Anapc15-ps|4732465J04Rik_chr10_95790613_R GTCTCGTGGGCTCGGACACTGGTGGTTGATCTGAGG 59.6 0.05
mm4_intergenic_Gm22882|Cxcl12_chr6_116913905_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm22882|Cxcl12_chr6_116913905_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm22000|Myl4/Gm22000_chr11_104559910_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm22000|Myl4/Gm22000_chr11_104559910_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Dctd_chr8_48133715_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Dctd_chr8_48133715_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Gm21976_chr13_98302314_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Gm21976_chr13_98302314_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm20628/Hist2h3b/Hist2h2bb|Hist2h2bb_chr3_96276241_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm20628/Hist2h3b/Hist2h2bb|Hist2h2bb_chr3_96276241_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Dock2_chr11_34287478_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Dock2_chr11_34287478_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Hunk_chr16_90474262_F TCGTCGGCAGCGTCCACAGAGAGCCCTTCCTGTG 60.0 0.04
mm4_intron_Hunk_chr16_90474262_R GTCTCGTGGGCTCGGAGTGTTTACCTCACCAAAGCCT 59.8 0.04
mm4_intergenic_Slc25a20|Prkar2a_chr9_108688564_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Slc25a20|Prkar2a_chr9_108688564_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Syn3_chr10_86365224_F TCGTCGGCAGCGTCCTCCACTTGCCAAAAGACGG 59.4 0.04
mm4_intron_Syn3_chr10_86365224_R GTCTCGTGGGCTCGGTGTCACCTTGAGCAACTGCA 60.1 0.04
mm4_intergenic_Eif4g2|Galnt18_chr7_111283753_F TCGTCGGCAGCGTCGGCACATCTGGCAATCTGGA 60.3 0.04
mm4_intergenic_Eif4g2|Galnt18_chr7_111283753_R GTCTCGTGGGCTCGGTCACGGTTCTCAGTGGAACG 59.9 0.04
mm4_intron_Lep_chr6_29070429_F TCGTCGGCAGCGTCAAGAGTCATCAGGGCTGCAC 60.0 0.04
mm4_intron_Lep_chr6_29070429_R GTCTCGTGGGCTCGGCATTAGGGTCAAAGCCGTGC 59.5 0.04
mm4_intergenic_Gm22805|Gm4791_chr9_46958527_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm22805|Gm4791_chr9_46958527_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_n-R5s42|Fam19a5_chr15_87543939_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_n-R5s42|Fam19a5_chr15_87543939_R Primer3: not found at this Tm N.d. 0.04
mm3_exon_C230012O17Rik_chr4_24964046_F Primer3: not found at this Tm N.d. 0.04
mm3_exon_C230012O17Rik_chr4_24964046_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm10612/Cbfa2t3|Acsf3_chr8_122770617_F TCGTCGGCAGCGTCACAGTCTGAGCATGACGGTG 60.0 0.04
mm4_intergenic_Gm10612/Cbfa2t3|Acsf3_chr8_122770617_R GTCTCGTGGGCTCGGAATCCCCAAGAAGTGCCTGG 59.9 0.04
mm4_intergenic_Erf|Cic_chr7_25260787_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Erf|Cic_chr7_25260787_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Gm1082_chr7_30516150_F Primer3: not found at this Tm N.d. 0.03
mm4_intron_Gm1082_chr7_30516150_R Primer3: not found at this Tm N.d. 0.03
mm4_exon_Gpsm1_chr2_26326201_F Primer3: not found at this Tm N.d. 0.03
mm4_exon_Gpsm1_chr2_26326201_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Lrp1|Stat6_chr10_127621934_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Lrp1|Stat6_chr10_127621934_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Afap1l2_chr19_56930612_F Primer3: not found at this Tm N.d. 0.03
mm4_intron_Afap1l2_chr19_56930612_R Primer3: not found at this Tm N.d. 0.03
mm3_intron_Tpd52_chr3_8949198_F Primer3: not found at this Tm N.d. 0.02
mm3_intron_Tpd52_chr3_8949198_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_2810442N19Rik/Dnm3|Pigc_chr1_162022338_F TCGTCGGCAGCGTCGCTGAATGAACAAGGCACACT 59.3 0.02
mm4_intergenic_2810442N19Rik/Dnm3|Pigc_chr1_162022338_R GTCTCGTGGGCTCGGTGTGGAATGGGGAGGTACGA 60.2 0.02
mm4_intergenic_Blcap|2410019O14Rik_chr2_157591169_F TCGTCGGCAGCGTCTCCCTCTCCCTCTAGTCTGC 59.4 0.02
mm4_intergenic_Blcap|2410019O14Rik_chr2_157591169_R GTCTCGTGGGCTCGGTCCACCAGACTCTCACCTCT 59.2 0.02
mm2_intergenic_Phf15|Gm26551_chr11_51948424_F Primer3: not found at this Tm N.d. 0.02
mm2_intergenic_Phf15|Gm26551_chr11_51948424_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Sorl1_chr9_42076656_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Sorl1_chr9_42076656_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Arhgef11|Gm6570_chr3_87678265_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Arhgef11|Gm6570_chr3_87678265_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Gm22217|Gm22448_chr16_66039692_F TCGTCGGCAGCGTCAGCCTCTGTCAATTTAAGCTCTCT 59.7 0.02
mm3_intergenic_Gm22217|Gm22448_chr16_66039692_R GTCTCGTGGGCTCGGAGTAGCATTTAGTCGCAATCATG 57.3 0.02
mm4_intergenic_Gm24070|Gm24994_chr12_77906179_F TCGTCGGCAGCGTCGGGAGAGAACAGGAGGCCTA 60.0 0.02
mm4_intergenic_Gm24070|Gm24994_chr12_77906179_R GTCTCGTGGGCTCGGGATTAGCTAAGAGGGAGCGGG 59.7 0.02
mm4_intergenic_Smoc2|Thbs2_chr17_14427151_F TCGTCGGCAGCGTCTCTCTCCCACAGTGGAGACA 59.5 0.02
mm4_intergenic_Smoc2|Thbs2_chr17_14427151_R GTCTCGTGGGCTCGGTGCACGTCTCTCTCTCCAGA 59.9 0.02
mm4_intron_2810408A11Rik_chr11_69898592_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_2810408A11Rik_chr11_69898592_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm12721|1700024P16Rik_chr4_104974638_F TCGTCGGCAGCGTCTGTAGGCGTTGAACCTGTGT 59.5 0.02
mm4_intergenic_Gm12721|1700024P16Rik_chr4_104974638_R GTCTCGTGGGCTCGGCGGCCTTGTGACACAATTCC 59.7 0.02
mm4_intron_Slc25a42_chr8_70199458_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Slc25a42_chr8_70199458_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Atl2|Hnrnpll_chr17_79935972_F TCGTCGGCAGCGTCACACACACTCTGCAGGAAGC 60.5 0.01
mm4_intergenic_Atl2|Hnrnpll_chr17_79935972_R GTCTCGTGGGCTCGGACCACATGCTTATTTCATGCTGT 59.2 0.01
mm4_intron_Aldh3a2_chr11_61266828_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Aldh3a2_chr11_61266828_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Rft1|Sfmbt1_chr14_30698677_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Rft1|Sfmbt1_chr14_30698677_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Slc24a3_chr2_145631342_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Slc24a3_chr2_145631342_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Ufm1|Trpc4_chr3_53896482_F TCGTCGGCAGCGTCGCTTGTCCATTCTGGGTCAC 58.8 0.01
mm4_intergenic_Ufm1|Trpc4_chr3_53896482_R GTCTCGTGGGCTCGGGGCCTCCCATCTAGACATGC 59.9 0.01
mm4_intergenic_Gm12829|9130410C08Rik_chr4_114798687_F TCGTCGGCAGCGTCCCCATGCGAGGTGTGTATGA 59.8 0.00
mm4_intergenic_Gm12829|9130410C08Rik_chr4_114798687_R GTCTCGTGGGCTCGGTCAGTTCAGCTCTCCTGGAGA 59.9 0.00
mm4_intron_Vps4b_chr1_106796376_F TCGTCGGCAGCGTCGGCCGCTTCTCAGTCCCC 62.4 0.00
mm4_intron_Vps4b_chr1_106796376_R GTCTCGTGGGCTCGGCTCGGATCTCCACCATGGC 59.9 0.00
mm4_intron_Scai_chr2_39077496_F TCGTCGGCAGCGTCTCTGTGATGCAGTGGTTCCC 59.9 0.00
mm4_intron_Scai_chr2_39077496_R GTCTCGTGGGCTCGGCACCATACAACAGCATCATTCCA 59.3 0.00
mm4_intron_Pik3c2g_chr6_139912558_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Pik3c2g_chr6_139912558_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Lcorl_chr5_45856983_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Lcorl_chr5_45856983_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Kndc1_chr7_139912251_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Kndc1_chr7_139912251_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Fhod3_chr18_24869780_F TCGTCGGCAGCGTCGGGTAGAGGGCAGGGATGTA 60.1 0.00
mm4_intron_Fhod3_chr18_24869780_R GTCTCGTGGGCTCGGAACTGAGAAAGGCCTGCAGG 60.2 0.00
mm4_intron_Cux2_chr5_121911567_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Cux2_chr5_121911567_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Zfp362|Gm12968_chr4_128842359_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Zfp362|Gm12968_chr4_128842359_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Tnfrsf19|Sacs_chr14_61071166_F TCGTCGGCAGCGTCTCTGTTTCAAAAGCCCAGGGA 59.7 0.00
mm4_intergenic_Tnfrsf19|Sacs_chr14_61071166_R GTCTCGTGGGCTCGGTGGTTTTGGTGCTGGAGGTT 60.0 0.00
mm4_intergenic_Shc1|Pygo2_chr3_89430021_F TCGTCGGCAGCGTCGACAAGGAATGGTCGCCAAA 58.7 0.00
mm4_intergenic_Shc1|Pygo2_chr3_89430021_R GTCTCGTGGGCTCGGACCTCCCACAGACAGCCC 60.9 0.00
mm4_intergenic_Neurl1b|Dusp1_chr17_26458197_F TCGTCGGCAGCGTCTACGCGATGTCAACACTGCT 60.0 0.00
mm4_intergenic_Neurl1b|Dusp1_chr17_26458197_R GTCTCGTGGGCTCGGCTGTCTGTCAGGGCTTCTCA 59.0 0.00
mm4_intergenic_Mettl24|Cdc40_chr10_40811500_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Mettl24|Cdc40_chr10_40811500_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_MIMT1_1|Mir3099_chr7_6787931_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_MIMT1_1|Mir3099_chr7_6787931_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Lrfn2|Gm22978_chr17_49253813_F TCGTCGGCAGCGTCGGCTCCCAAATCCACCTTGA 59.9 0.00
mm4_intergenic_Lrfn2|Gm22978_chr17_49253813_R GTCTCGTGGGCTCGGAGCTGCCCATAATCCTGCTC 59.8 0.00
mm4_intergenic_Gpc5|Gpc6_chr14_116600902_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gpc5|Gpc6_chr14_116600902_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm9341|Gm24444_chr7_136449762_F TCGTCGGCAGCGTCCCACCCAGGTTGTTGCCA 60.1 0.00
mm4_intergenic_Gm9341|Gm24444_chr7_136449762_R GTCTCGTGGGCTCGGGGCATGCTCTGAGACCAACT 60.0 0.00
mm4_intergenic_Gm831|Gm12962_chr4_131577328_F TCGTCGGCAGCGTCCGTTGTTGCGTTTGTCTGGT 59.9 0.00
mm4_intergenic_Gm831|Gm12962_chr4_131577328_R GTCTCGTGGGCTCGGCTTCACCAAATCAGCAGCGC 60.4 0.00
mm4_intergenic_Gm6404|Isl1_chr13_116296147_F TCGTCGGCAGCGTCTGAGAAACAGGAGAGTGGGG 58.6 0.00
mm4_intergenic_Gm6404|Isl1_chr13_116296147_R GTCTCGTGGGCTCGGCATGCCTTCCTGTTTGCAGA 58.7 0.00
mm4_intergenic_Gm24691|Grm8_chr6_26471647_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm24691|Grm8_chr6_26471647_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm22563|Gm23043_chr4_51572206_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm22563|Gm23043_chr4_51572206_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm22492|Pdcd6ip_chr9_113455151_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm22492|Pdcd6ip_chr9_113455151_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm20476|Stard10_chr7_101320365_F TCGTCGGCAGCGTCCAGGGCTCCCAGAATGGAAG 60.1 0.00
mm4_intergenic_Gm20476|Stard10_chr7_101320365_R GTCTCGTGGGCTCGGCTGCAGAACACTGGAGCACA 60.5 0.00
mm4_intergenic_Dgat2|Mogat2_chr7_99188114_F TCGTCGGCAGCGTCCCCATGGACAGAAGAGCCAA 59.6 0.00
mm4_intergenic_Dgat2|Mogat2_chr7_99188114_R GTCTCGTGGGCTCGGCTGCCAGGTTACCATGGGTT 59.9 0.00
mm4_intergenic_D10Jhu81e|Pwp2_chr10_78170703_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_D10Jhu81e|Pwp2_chr10_78170703_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_RP24-289J12.1_chr15_75645967_F TCGTCGGCAGCGTCTGAGGCTCCTACAGGACAGG 60.3 0.00
mm4_exon_RP24-289J12.1_chr15_75645967_R GTCTCGTGGGCTCGGCTACTGTGGCACTCTGGGAG 59.4 0.00
mm4_exon_Gmfg_chr7_28448102_F TCGTCGGCAGCGTCAGGTGACTCGCCCAATCAAG 60.0 0.00
mm4_exon_Gmfg_chr7_28448102_R GTCTCGTGGGCTCGGACATCAGGGTGCTGGTACTTC 59.7 0.00
mm4_exon_A930009A15Rik_chr10_115582221_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_A930009A15Rik_chr10_115582221_R Primer3: not found at this Tm N.d. 0.00
mm3_intergenic_Anxa10|Gm22324_chr8_62534460_F Primer3: not found at this Tm N.d. 0.00
mm3_intergenic_Anxa10|Gm22324_chr8_62534460_R Primer3: not found at this Tm N.d. 0.00

Off-target amplicon sequences with primers

These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.

ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313816 AGGGAGCCTGGGATTAGGAGCTTACTTGGGGGTTTTCCCCCTCCCCCCCTCTGGAGAGTCCGGGGATGGAGAGCCGAAAG
GAC
mm3_intron_Nkain1_chr4_130539400 GCAAGGAGGACATCAAGGCTTCTATGCCTGGTTGTGGCTTTGGGGGAAGGGTGAGAATTTGAGTCACCCTGGTCCTGCCC
TCTCCTTCCTTCTGGAGAGTC
CATCTCATGACAAACAGTCATGGGGTGA
mm4_intergenic_Gm13418|Gm13417_chr2_24513083 ATGCTGGCAGGAAAGAACCAGTAAGGATAGGACTCTCCAGAAAGGAGGAAGGGTGTGAGCTGTTGAATTTTGGGAAATGA
GCCCATGCAGA
mm3_exon_Igf2bp1/Mir3063_chr11_95961325 GGAAGAGCCGGCTAAGGTACTGTCTCACCAGAGGGGAGGAGGGGTGCCCACAGTTTGACCCCCAAGGGCTAAAGCTCTGC
T
mm3_intron_Zfp389_chr13_21506373 GCTCCACAGACTGCAGTTCTGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTAGGGAGCCGGC
TCTCCAGAGGAGAGGAGAGG
GTGAGGGGTGGAGAGTACGG
mm4_intergenic_Mrps33|Gm26833_chr6_39859719 GTTTGCAAGGGTAGACACGCTTCTGTTGACACATACTTTCTTTTCCTGTATTAGATCCTTCTTCAGAAGCCCTAGAATCT
ACAGAGAGGGAGAGCGG
AATCTTAAGGGTTGGTCTTGGTAAGGATGGCC
mm3_intron_Mctp2_chr7_72203191 GCCAATGGTGTAGAGCTGCTGAAAACCTCAAACACATGGAAACACAGAAGCAAACCCTCCAAAGGGGGGGAGGGGCGCTT
AGGTGCCCAGGCATTTGTTTGTTCT
mm4_intergenic_Lin52|Vsx2_chr12_84547079 CCCTCTAGGACCACCCTCTCTAGTCTCTTTTAATCCCCTCCCTCCCTCTGGGGATACTCCAAGGTCTGCCCCTTGCCAGG
TCAGGCCAGCAGAGGCACATGCAGGCCCCACCCTTCAGTTTTGGCAG
mm4_intergenic_Rassf5|Ikbke_chr1_131251282 CTCTCTGGCCACTCTCGTTCCTCTCCATCTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGGTGAGGG
AGGTATGGAAAAACCAAGGCTCTAAAAGGCAGT
mm4_intergenic_Wnt11/Gm8398|Uvrag_chr7_98867132 ACAGTGGCTGGAAGGATTGGGTCCAGAATGCTGCCTATTGTCACTCACCCCAGCCCTTCCCCTCCCCTGGAGAGTAGTAG
GACTATGGGCAGTTCACAGAACACCAGAGCCTACCAGG
mm4_intergenic_Sorcs2|mmu-mir-7689_chr5_36286599 GGGTAGAAGCACCATGCCTTGCTTAACTGTAGAACCCCACCCACTCTGCCTCTCCAGGAGGAGGGAGGGGTTTGGTCAAT
GGGGTATAGGTCCCACGAATGACAAGC
mm4_intergenic_Pitpnb|Mn1_chr5_111408537 GTTGGGGAGGGTGGTTGTAGCCATGGCAGGAAGAGACCCAGGGCCTGGAGCAACCCCTCCTCTCCTTTGGAGCGTCAGTC
TCTGAGTCCCTGCACCCTGCCCCCCACTTTCTCCCGGCTCCCTGTGATTTAA
mm4_intron_Frs2_chr10_117087868 TGCCACTGCAGTCCATTGTATCACTTTATGTGTTAATTGTTTTGACTGTTAGCAAAGCTAACAATGTATTATGTGGATTT
GCTTGCTTTTCAGAGGGGGGGAGGGGCATTGAGAAAGGGACTATGTATGTGAAGGT
mm4_intron_Epb4.1l1_chr2_156509373 GATGGAGGTATGGCTCAGGCTACAGCTGGGGAGAGAGTGGTCCTCAGAGGAGAGGAGGGGCGTGGACAGGGCGGGTTCTC
CAGAGGAGAGGAGGGG
CGTGGACAGGGCGGGTTCTCCAGAAGAGACAGCCGGTA
mm4_intergenic_1700061E18Rik|Adtrp_chr13_41802428 ACTGCCTTTACAAACGCCCCCCCCTCCCCCTCTCTCTGGAGTCACAGGAGAAATTGTATCTCCAGCACTGTTTTTCTGCT
CACAATGTAAACACAGTGGCTGTGCTTTCAATATGGCCCCCTCTTGCCAAAATTCCCGC
mm4_intergenic_Gm22251|Zfp521_chr18_13461463 TGTCTCACCCTTCACTCTTCTTCTTTTACTACCCCTACCCCCTCTCTGTAGAGTCCAGAATTCAAAATGGTCTCAGCTCA
TGGCTGTTTAGATTGTTTGTGCCTCTGCGTGATC
mm4_intergenic_Ide|Kif11_chr19_37358087 TGCTCAACAAAGGTACAGGAGAAACTTTCCTGAGGGAGGGAGGGGTTCCTTAGAGGGAGGAGAGCAAAATAGAACGAGCA
GGCCTCCAGTGTAACACCTTCACCCGGT
mm4_intron_Tbx5_chr5_119845381 GCCAAGTTGGAGCTGTTTGCGTTGTATTCATGGTGAGAAAGAATCTCTCTCACCTATGCTTTCTAGTTAGAACCAAACTA
GTTATCACGCACAATTGGAGTCTACAGAAAGGGGGAGAGGAAAGGTGACATTGTGCTGCT
mm4_exon_Plxna1/Gm26811_chr6_89318769 GAAGGGTTCGCCTAGCCATTGTCCACATGTCACTTGGAAGTGGGGTCTGCAGGCCCTCCATAGGAGGGGAGTGGGGCCTC
TCTCCCCAGCAGAAGGATGTGGCACTC
mm4_intergenic_Gm8994|Gm15476_chr6_136359093 TCCAGAGAGGGTGATGTCTGAAGAAATAACTAACACCCAGACTCACCAGGGGAGGGAAGAGGAACCCACTCTAGGCAAAT
GGC
mm4_intron_Mkl2_chr16_13266310 GCAAACTGGCCTTGCATCTTTAGCGTAGATAGACGCAACTTCACATACACGCTCTTTTTGTGTCTTCAGAGAGGGGGAGG
GG
AAGGCTAAGTGTGTATGTTAAACCCA
mm4_intergenic_Nnmt|Zbtb16_chr9_48640697 ATAGGTGACATAAAAGCAGAGAGAGAATCAGCAGAGGAGGGGAGAGGAAAGGAGAAAAGAAAAATGGGGGCAGATGCCAT
GAGCAAAGTGTGATGA
mm4_intergenic_Ucn3|Gm22460_chr13_3947833 CTCTCCTCTCTTGAAGCCAGACCCCCTCCCCCTCTGTGAAGATTCAGGCATCTTTGTGACTGTTGTTGTCTCTGGAACCT
AGGGTTTTGACAATGAGAACAAGCATATCAGTTTCCATTGGCTGACAGGACT
mm4_intron_Ttc23l_chr15_10555307 TCTCTCACCAAACAACACCCCCCACACACCCGCTCCCCCCCCCCTGGGAGTCTTCTTGGCCTTCTAAAGGTCAATTCCTC
CGAGGCTGAGGCTGAATCACAC
mm4_intron_Wdr19_chr5_65248725 AGAAAGTTGTTTGATCTTCAGCCCCCACTCCCCCTCCCTGCAGAGTTTAAGATGCAGAATTTGATGAGGTTTCTCTCTTA
TGAAACAGGTGGGCCAGG
mm4_intergenic_Tas1r2|Pax7_chr4_139710613 AAGGCAACAAAGGACCCCAACTGTCCCTCAGGAGGGAGGACTCTCCTGGAGGGGGAAGGGGTGACTTGGTGAGGCAGGCG
ACCTAACTAGGGGTGGGTAATGGGTGACAG
mm4_intron_Lasp1_chr11_97808233 GGGCTCACACAAACCCTGATTCTCTGCCACTTCCTCCCCCCAACCCCCCTTTGGAGAGTGGGGTGAGGTTCAGAGGAAAA
AAAAAAAAGCCCAGGGCATTTAACCCTTTGGGTGCTGGACTGCTTTAG
mm4_intergenic_Gm16160|Ngf_chr3_102310566 CCCCAAGGAACCTATGGCAGATTCCTTGCTCATTGGTCACTAGGGTGACACAGCTGAGTGTGAGTAACCAGAGAGGGGGA
GGGG
CAAAAGGGAAGAAGAGCGGGAACTCTCTAAATCATCGCAGCTGTGAGGCATCCTAA
mm4_intron_Col1a1_chr11_94936877 AAAGGCTGCGGGATGATTCATAAGGAAAGATTGTTTGCCCTCTCTGCAGGCTAGACAGTGTTGCTGGGGCCTCCGGGGTG
CTGGGCTCTCGGGGGGGGGGGAGGGGACGCACGGAGAGGGCGGGTTGCTGGATGAGAAA
mm4_exon_Rnf207_chr4_152314955 GAACATGCAGCCCACTTTGGGTGGTAGCCACCTGTGCATCTCACACACACACACCCAGCTCCTCTCCCCCCCGATGTGGA
GTC
GCCGCCAAGGTTCAGGCTCAGCGCTAGAGGTCAAGGGTGGGAGG
mm4_exon_Ubn2/mmu-mir-7670_chr6_38502285 TGGAGGCCAAAGTAAAGGGGACACTAAGTTACCACGGAAACCTCAGTGACTTTCCAGCAAGGGGGAGAGGAACCACTTGG
CTGGCTGGCGGGACCGACCTGATGGGAAGTC
mm4_intergenic_Lekr1|Ccnl1_chr3_65889043 CCCCTCACCAACACAGAGTTTGACCTCACCAACACAGAATTAAGTAGCTGTGTGGGTGATCATGTCTCCCAACCCCTCCC
CCCATCTGTGGAGCC
TTAAAAGGCTGAGTAGTCACAGGACAGCCCT
mm3_exon_Ece1_chr4_137963007 AAAAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCCCCTCGGCCTAGGGCCCCTTC
CCCACTCTGGAGAGTA
TGCAGCCATCCTAAGCCTAAGATGGATGGAGCCTCACCAC
mm3_intron_Rai14_chr15_10628116 CTCCAAGTTCCTGAGCAGCTTCAAGAGAGAAACACTTGGTCCACACAATCTATGACTACCTAAGACCAACCTTCAAAAGG
AAGCTGTACAGTGACTCTGCAGAGAGGGGCAGAGGCTGCAATCGCATACTGTACGTAACT
mm4_intron_Apaf1_chr10_91072025 CTATGGGCACAAGAGGGAGCAATTTAGCCTTGAATGAGGCTTGCACATATATATATGCATTCAGAGAAATTTATTCAAAG
AAATACTGCCCAGAGGGGGGGGGGGGAAGAGGTCTCGTTCTATTTTGACA
mm4_intron_Pax7_chr4_139758400 TGCCAGGCTTGCCTAATGAAAATCAGAAGAAGCGGGTCTTGTGACATGCTTATGCCCCTCCCCCATTCTGAAGATTCTCA
GAGGACCCCACCCTAGTCTGAGGAGCGAG
mm4_intron_Ctdspl_chr9_118975386 GCATGGAAGGGCTCTTTCCTTCCCTCCTCCTGCTGCTTCCCCCTCCCCCGCCCTGGAGAGCTGCAGATTTGTCTTGCAGA
CCCACTTGAGTCTACTTGCCTGTACCTGCTGC
mm4_intergenic_Gm15170|Gm8662_chrX_158236317 ACCAACTTGCCCAGACTTCCTCCTCTCCAGAGGTGGGGAAAGGGAATTCGTCAAGCTTCTGTCCATTCCATCCCCCTCCC
TCCCACACTGATA
mm4_intron_Eya4_chr10_23147297 GTGGAGGGCATTGGACAGTAGAATGATCTCTGTAACTTTGTGCTGCCTCCTCTCTCTCCCACTGGAGAGTGAACACAGGA
TTCTGAGAGTAAGAGTCACTGAGCACTCACTGATGCC
mm4_intron_Sdk2_chr11_114038028 GACAAAGAGGGACCTGCCAGCCACTGGGGGTACACAAACACACATGTGATCCCCTACTTCTAATTTGGAAGCTCCTTGCT
CCAAATTAGACACTGCAGAAAGGGGGAGGGGGGCGAACCACTCAACCAGCCAT
mm4_intergenic_Gm7030|Gm19684/Gm7030_chr17_36128318 TCCATCCTGAAACAGACTCTGAACTATCCTGAGAGAAGGGAAATATTGAGGAGAGCCCCTCTCCCCCTCTGGATACTGGG
TCAAGAAAACTAGAAGCCTTCTCTCTATCCTGAGGCAGACAAAGGC
mm4_intron_Fam53b_chr7_132809281 TACCAACACGACCTGCTGTCGCCGGCCTGAGAGTGACACAGTGGGAAAAGTACTCCCCCCCCCCCCCCCCCCTAGAGATT
C
AAGGATGACTCTGAGGTTTGCTCTCCTTTCTATGAAGTCCTAGCAAGATCTGGCCACA
mm4_intergenic_Lep|Gm25589_chr6_29104940 GATTTTCAGCAAGCCCAAAGCTTCTCCAGACTCCGGAGAGGGGGGTAGGGGGAGGGCAGTTCCTTTTCTCTCCCATGTAC
ATTTAATTTCCCATTTTCCAGTTGCTCCTAGACAGATGAGTGGGGAGGAGGA
mm4_intron_Gse1_chr8_120346087 TGCTACATTGGGGATGCTGGGTCAGACCCTGAGGTTACAGACTACTGTTCAGAGGGGGGGGGTGGTCTGGAAACCCCAAA
TCTATGTTCCTGGGATATGATGAGTGGGG
mm4_intergenic_Dmrta2|Elavl4_chr4_110018249 GCTTCCCAAGTAGACCGGACTTCACCCCTCCCTCCCTCTGCAGTTTCCTTTCCGGGGTGGGGGGGGGGGAGTGAGTTTCC
TTTATGCGACTGCAAGCCCCTTCCCTTGCTTTGAAAGTTTGAAAGCAGCTCCAGTGACC
mm4_intergenic_Atf3|Gm24748_chr1_191196727 AGCTCCTACAAGGGTGTGGAACATGATAGGAAAGGGGCTCTCCTCAGGGAGGGAGGGGAGACCTGTGTAAGAATGCAGAC
ACAAGATGGATGAGTCTGGGAAAGCCACTTGAGGTC
mm4_intergenic_Gm25130|Gm22970_chr14_99492801 TCCAGAGATTCATGTAGCAGCAATTGTTAAGAAGACTCTCAAGTGGGAGGGAAGGGCAAATGAATCCATCAGTCTGTCTC
TCTTTTCTACTGAAAGAATTAGTGAACTCTTCCCTTGGGG
mm4_intron_Bcl7c_chr7_127704687 CCAGAAGTGTGGGCCTATGGCTCCACATGGAAGGGATGGCTCAGCTGGAGACAATGCTGCACCTTCCTGAGGGGGGGAGC
GG
TCTGGGGGCTTCCTCTGGGCCTGGGTTCCTGTGAGTGAACTGGGGAC
mm4_intergenic_4930430O22Rik|Msi1_chr5_115436908 CACTGGTCAGCAGGCCTCGGTCGCCTCCCCTCCCCCCCTCCGGAGCCCCCCTGCCCCCAGGTTCCCATGGAGACCAAAGC
C
mm2_exon_Gm26794/Kcnj3_chr2_55436426 GCCTGTTCTCTGTCACTGGGTGAGTGCCCAGGCTTCCAGAGCTCCCTGGAGCGCAGGGGTAGCTTGACGTCCGCTCACCC
CCTCCGGAGAGTC
CACCCAAAGGCCCAGGTGGAGCGCGTGAAAACTC
mm4_intergenic_Gm22594|1110002J07Rik_chr10_66698625 TCCCAAGACACCTCTGAGAGACCCCCCCCCCCCTCTGGACAGAATACCAGGTGCACTTCTGCAAAAGCCAGACAGTATTC
CCAGCCTATGTGCAAAGTGC
mm4_intron_Ccdc115_chr1_34439006 GGGAAGTTGGATCTCTGGCCGCGCCGGCCTAGGTCCTGCCCATCCACTCTCCAANNNNNNNNNNNNNNNNNNNNNNTCAC
CTGGCACGCACGCAGACCTGAGGCTCCATAC
mm4_exon_Prph2_chr17_46923853 GGGCTCTGTCCAAGTGTGAGTCCAGATCTCTCATAGGTGACTGGCCACACCAAGGGCCTCTCCCCTCCTCAGTAGTGTCT
GCCTCTTTTAAGCTACAAGTTCTGCATCCCAACCATCACT
mm4_intron_Nav3_chr10_109832298 AACCAGTTGGAAATGCGCACAGTAGGTCTCCTCTCCCCCTCACTGGAGAGGGAAAGGTTGGTCAGAGACTTTTGTTTCTG
GAGACAGGCTCCTTTTTTCTTTACTTCTTTGCCGCGAAACACA
mm4_intergenic_Ano6|D030018L15Rik_chr15_96002927 ACCCCATCCCTTCCCCATAATCCCTTCTCTCCCACCCCCCCCCCTCTCTTGAGAATCACACCCTCATATGTGGGTATGCC
TGTCCTTTTGAGCACCCT
mm4_intergenic_Fbxl17|A930002H24Rik_chr17_63529956 TCCATCCGGATTCCCTCCTTTCTTTCATGGAATGGGGAAGGCACCTTTCCAATGACAGTCTTGCGACTTTCCTCAGGGGA
GGAGCGG
GTAAACGCGTCTATGCTGCTATGA
mm4_exon_Pnkd_chr1_74286138 TCTGAAATGCGGGTGGAGAGCTGAATCCAAGGGAAGGAAATTGCTGGAGTCAAGGGATGGACTCTCAGAAGGGGGGGGGG
GG
CTAGGGTGGAAAAATATGTAAAATTGGGGGATAGTGGCTTTTCTGTGGAGCA
mm4_intron_D630003M21Rik_chr2_158221637 CTGAGCTGTGTGGTGGGAATGGGGAAGTCACTCCCCAGAGCGGGGGTGAGGGGGGGTGGTGGTGGGGGATCCTTAGTCCG
GTAGAACAGGAAGGGT
mm4_intergenic_Tfap2c|Gm22773_chr2_172759155 TGAGAAGCTGCGTGAGACAGGACATCTTGGCCCAGCCTGCTTCCGCTCCTCCCCACTGCAGAGTAGAGTGGCTTTTCTGA
CTGGCTTCCAGGGAGCCTGTCTGAAGGGCAGCTGTGAGGAGCGGAGGGAGAGAAAGTG
mm4_intergenic_Cd274|Pdcd1lg2_chr19_29408112 CTCTGACAACCCCTTCACCCCCAACCCCCCCACCCCCGCTCTGAAGAGGCCTTTCTGGGGGAAGGAGATCTGACTTAAAT
TTGACAATTTTGAGTTCAGTAACTTGCCTTTTGGCCAGGAGTCAGAGC
mm4_intergenic_Lrpap1|Adra2c_chr5_35236251 AAGCGTCTGAACTGCACAGAGACTCACCGGAAGTGGGGAGAGGTGACATGGACATCCTGTCTTGACTTTGGGATTCTTGT
CCTTGGTCCCGGGTGCCTTCTCACAGTGGCTCTT
mm4_intron_Ano10_chr9_122285436 GCAGATCAGGGTTCCACCTCCAGTGACAGGCTCTGAGGAAGTGAATCAAATTAGAGACTCAGCAGAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGACGGACACGGACTCAGAGGAGGG
mm4_intron_Ttll5_chr12_85954162 GGTGTTTGCTGTGAGGGGATAAACACTGGCGTTTGAATCGGGGACTGCAGCGCCGACAAATGGATTATCAAACCTGTCCA
ATCCACCCTCTCCTCCCCTCTGCACACTCTATTGTCCAGATTCTGCCCTTTGTGC
mm4_intron_Ust_chr10_8409203 GCAAACTCCCCTCATGCTCTAGGGAAATGAGTGGGATTACTCTCCCGGGGGGGGGGGGGGGGGTTACACAGGCTAGTTGG
AGATGCTCATGAATGCCGATGTCAATTTAGAAGTGGGTTTGATGGCCA
mm4_intron_Col23a1_chr11_51459630 GACTGAGGGCTCTTTGGCATCATCTACAAAGGCATCCAAGCTGGGAACAGCTGAGTCTGAGGCAGGCTGCTCTGCACAGC
AGTGACAGGAGGCTCCAGAGGGGGACAGGGGGACAGTGAAGGACAGGGTTGCT
mm4_intron_Sntb1_chr15_55785610 AGCCTCAGAGAACCAGGACTAGAAAGTGATGAAATTTGGTAAATGAATTCTTATTCTGCTCTGTTCTGACTCTCCTGGGG
GGGGGGAGGG
GAACCATGTGAAATAAAGAAGTTTAATTAGTCATGAAAGGACAGTGAACT
mm4_intergenic_Trpm5|Kcnq1_chr7_143100647 CCTTACTGCTGCCTGTTCCATCCACAAGGATAGACAATAGTCACCAGTGGGGGGGAGGGGCTACAGAGAGATATCAGTGG
TTCACAGTGGGAAGCTC
mm4_intergenic_Cdh23|4632428N05Rik_chr10_60341449 TGGTGCATCATCATGGCTGTGACTGCTGCTCTCTAGGTGCTCCGCTAGTCCCCTCTGAAGAGTCCCCCCTTTAAATGTTT
GAGTCAAGCCTTTTCTTCATATACCACACTACTCCTGCAGGGA
mm4_exon_Cpa1_chr6_30639960 CTCCTTGTGCCTTTACGGGTTCAGTAGACCTGTAAGAAGCCTGTGAAGTGGGGGGGGGGGTACCGCAGGTTCTCAGAGCC
CCTCCCCCCCTCTGCCCAGGC
ACCAGGTTCTCCGAATCTCTGCCACCGACGAAG
mm4_intergenic_Gm16477|Gpr26_chr7_131728222 CATGAACCTGGAAGGCTGGGCACTCAGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTGACTCAGC
GGCTCCCCAGGGCTCTCCTGAAGGCGGGAGAGGCTGGCTTAGTGGGAGCTAATGCCATCC
mm4_intron_Kitl_chr10_100020730 CCTTTCGGGGCTGTTGTGTATGCATAGACTCTCCTTGGGGGGGGGGGGGAACATTGACTCGTGCCTTGCTGA
mm4_intergenic_Gm24749|Gm5277_chr3_78888712 GCAGGTCAGGGCAACTTGTATTTTACCCAGCAGACTCATTACACAGACTCTGAACAGGGAGGGAGTGGCATTGAGAGATA
CTGAGAGCATCTATGATACAGGCATTGGATGGTGCTCAT
mm4_intron_Abi3bp_chr16_56540138 AGGAGTCCAGCCTGGTCTATACTGAGTGAGTCTCAAAAGGGGGGGGGGGGTGGGAGATGGGATCTTAGTAGATTGATTGA
AGCAGTAGAAAATTTTACTTAATGCCCACTAGAGTCCAGAAGT
mm4_intergenic_Ftl2/Mir692-2a|Grik3_chr4_125573821 TCTATCTCCACCCTGCCTCCCCACCCCACCCCCCATCTGTAGAGACGTCCCATTGTTCAAGATTATCAGTCTCAAGGCGC
TATCTCAGC
mm3_exon_Axin2_chr11_108950127 TCTGCTTGTCACAGACGTCCTGTGGGTTGGTTGTGACAGCATCTTCACCACTTTGGGGACCATCCAGAGTGGGGGAGTGG
GGGAGACTTCACCCTGGAGCCAAAGGCTACACCGTACGTGTAGTCCCAGA
mm4_intergenic_Gm16314|Gnb1l_chr16_18503817 TCTCACTATACATGGTTATGCTGAAAAAAAAGCCCCTACCCCACCCCCGCTCTGCAGAGTATGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCTCGCAGATTGAGTCTCAA
mm4_intergenic_Gm17590/Cdk6|Cdk6_chr5_3496971 TGGTAGGACCCAGAGACAAAGATAATAGTTTCCCAAAGCCACTCTCCTGGGGGGGGGGGGGGGCAGGGAGTTAGATTCCA
TTTTTGTAAAAAGCTCTAGTGTGATAGAACCTGAATTCGGTTAAGCCAGCCT
mm4_intron_Cntnap2_chr6_47156485 AGAACTTTGGGTGAGATGACTCAAATATTTTTATCAATCATTTCCTCTCCCCATCCCTGGAAAGTCTGTTCTGTTTGTAA
CTCACTGCATTAATTGCTAATGCCCTTCCTTCTGATGCTG
mm4_intergenic_Gm8765|Gm22199_chr13_50809956 AGAGCTTTGGGTGAGATGACTCAAATATTTTTAGCAATCATTCCCTCTCCCCATCCCTGGAAAGTCTGTTCTGTTTGTAA
CTCACTGCATTAATTGCTAACGCCCTTCCTTCTGA
mm4_intron_C030046E11Rik_chr19_29565661 AACGATGGACACCAGCCATTGTTCAACAAGTTGTTTACTTTTAATTGAGGTAAATAGAGTATCTTATGTAGATTCTCCTG
GGGGGGGGGGCGG
GAGTGACATCTGTTGCTCTCCA
mm4_intron_Hoxb3_chr11_96326659 GTCTGTGTTCTGGATCTGGACAATCAAAGCTGACCACCCCCCCCCCCTACAGAGTCTGGGCCCCGCCGGCGCCCCCTCCC
CGTGGGGCAGGGGCAGGCTTCCAGCACTTTCCG
mm4_intergenic_Soga2|Gm4705_chr17_66387287 GTCCAGCAGCAGGTACAGAGAAGCCTATCTTAGGTCTGAGACTTCTTTCCCCATAGTTCATAGGCTTTCCGAGGGTTTCA
TCTATACTCTGCAGCCGGGGGGAGGGGGGGTATTTCGATGAGAAGACTGAGACCCCAGCT
mm4_intergenic_Gm11355|Prl_chr13_26923069 GCACAAGCAGGCACTAATCCAATGACTCTCAAGTCAGGGGGAGGGGGATTAAAACCCATAGGCAAGTGAGTGAAGGCAA
mm4_intron_Thsd7b_chr1_129496623 GTGTGTGTTTGTGCACGTGTCTGTGTGCCCCCTCCCCCCGTGTGTACAGTCGTTCATTGTGATCATTGGAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGCAATTATCATACCTTGCCT
mm3_intergenic_Slc28a3|Ntrk2_chr13_58614097 AGGTGCTATCCTGGAGCTCTTGCTACCTCTGCCGCCCTCTGGAGAGACTCTTAGTCCGTCACACATTATCGTCTGTGTGC
TTGCAAGA
mm4_intergenic_Gm15405|Gm27039_chr17_92064857 CCCAGCTCAACCTCCCTTTTCTTCCACTTCCCCACTCAGGAGAGACTAGTGGCCAGATACCTGCCTTCATTCTAGAGCCT
GCGAGTATCTCAGGAGATCTCCAGTAACCAAGGGCAGAGAAGGTC
mm4_intergenic_Cadm1|Nxpe2_chr9_47903207 CGTGTCACCATCGAGCCTTAGGAAGTTCCATCCTCCCCTCCCCTGTGGACAGTCACTCCCCCACCCCCACCCCTCACCGA
GGAGGCTTGGCATGACCCTGCCAAGAAACCAAGCAGGGCAAGGGCCTACCTGCAACTTC
mm4_intergenic_AU018091|Mir290_chr7_3217736 TCAGAGGAAGCAGGGTGGTAGAGTAAGGATTCTCCGGGGTGGGGGAGGGGTATCAGAGCCTCCCAGTCCAGGGGGCCAAT
GAGCCTTCAGACTATATAAGAACCTAGAGCCTCCCCCACGCCTCTCAGAGACTTC
mm4_intron_Zmat2_chr18_36796427 GGCTGAGAGCTTCTTTTAGCCATAGTTATTTTTGTTGTGTACTTTATTATGAAAAGGTAAACAAGTAAACAAACCTAAAA
AAGCCAGGGCGAGACTTTCCCGGGGGGGGGGGGGGTGGCTGAGGATGTTATAATGACT
mm4_intron_Lamb3_chr1_193303186 TTGAAGCCCTGAGAAGCCTGTCCCCCCCCCCCCCCTCTGCAGAAACAAAGCCTTAGACCTCCCTTTAGTTATCTGCTGCA
ATGGGATGTCC
mm4_intron_Glis3_chr19_28326298 TCCTGTCACTTCCTCGGTTCTTCTTCCTCTTTCCATAGCTTCCCCCCCCCCCCCCCGCTCTGGAGAACCTCTCCAAGTTA
ATAGGGTTAACACATTTGTGTTTCAGTATGGCACTTTCTAGTGTGGAGTCCAGGGAAGA
mm4_intergenic_Kalrn|Ropn1_chr16_34640237 TGCTTTTGGTGGGAGGTTTGTATGTTGATGAAAAGCTACCACCCCCCAAAATGCTCCCCCTCCCCCACTCCAGAGTGTCT
CCATTTCTAAGACATCTAATACCACTGTTGATATAAGAACCTGGT
mm4_intergenic_2610037D02Rik|Arid2_chr15_96286550 TGCTAGCACGATGAAGCCCGGAGGCCAACGCCTCCCGCTAGCAACGTCTCCAGAGGGGGCGAGCGGACTCGTCCGCGGCC
GCCGGGGCTGCGCCGAGCGAGCCTGCTTCTCAG
mm4_intergenic_Igfbp5|Tnp1_chr1_72877287 AGTCCATTCTCTCTGCCCTCTATTCGAAAAGCCCTGGACTCTTCAGAAGATGGGAGGGGGGGGGACTTAATATCAACAGA
GTTTCACTGAGATGACTAACTTATTCTGGACACACTGAAATCTGGTCGCACTCTCAGAGA
mm3_intergenic_Glb1|Ccr4_chr9_114476590 TGTGAGGGATCTAAGCTGTGGTACAATACCACATGTGGGCTATAGGAACGTAAAGTGACTGTCCAGAGAGTGGGAGGGGA
CACGCTGGCTCTAGGCAACTGTGT
mm4_intron_Ccser1_chr6_61725678 AGCCATTCACCTTTAAGTTAATTCAAATTACTTTAAGTACTTATAGAGAATACCCCCCCCCACCTCTGGAGAGGAGAACA
GAAATGTCCTAATTTGTGTTGAGCTGTCATGTATGCACTAGGG
mm4_intergenic_Gm4217|Nup50_chr15_84882399 AAGGGGAAGGAGATGAGGCTGTTGCCAGGCTGAGAGCAAGACTATCCAGAGAGCGGGTGAGGGAACAGGAAGGTCAGGAC
TCAGCACTGGAACCCACAAGGCTGGAACCATCATCCTCTGGGGTAGGGACA
mm4_intergenic_Eya4|Rps12_chr10_23362585 TGAGTTGTGTGGCTTGTCCAGGAAATACGTGCAGAGGGATATGTTCACTCTCCAGAGGGTAGAAGAGGACAACCTATCTA
GTTGCGTCACTGCCTAGAA
mm4_intergenic_Gm1821|Gm15217_chr14_46172698 AATGATGAGGAGTTGGCCGGCAGTTGGCAAACAAGGCATCCTTAGCCTTGGGCACATGCTGGAACCATTCTCCAGAGGGT
AGGAGGGG
CTTAGGGTGAGCAGGGAAACTCCCTGCAGAAGACCTTCA
mm4_intron_Git2_chr5_114766644 TTGGGGCTGGTTTGGAAACAAATAAGAACACAGTTCACTTAACAGCTCTGACACATTTCTCATTCTTTGTGCTGTAAGAA
GAGGAAGTGACACCCCCCCCCCCCCACTGGACAGTAAGAAGGGCAAAGCTGGACTC
mm4_exon_Nsun7_chr5_66294769 GGTGCTCCCTTCCTCTCTTGTATGAAGAGTCATTTTAACGGCTTACCCCTCTCTCCCCCACTGCAGACTCAGTCCTCCTG
TTCTCCCACTGT
mm4_intergenic_A330033J07Rik|Id4/A330033J07Rik_chr13_48240778 CTGAGCTGTTTTGCACACCATAAGGAAGATTATCAACCTCATGAATATAAAGCCAGAACTCTCTCTCCTGAGGGGGGGCG
GGG
GGCGGGAAGCAAAACCCGAACAGGTACGTTTCC
mm4_intron_Tmem40_chr6_115742044 TTCCTTCAACAGCAGGCACATGAGACCCTTCCCACCTTCTGGAGACTCTCCCCACTTCCAGCACAAGCTGTCCAGAAACT
TCTTGAGATCTGGGGAGTGGCCAAGGACCTGCCCGACTAGGAAGTGTG
mm4_exon_Dbndd2_chr2_164486970 ACCTAGCTCTGGGAATTGGCTCCGCAGCCCCCCTGTGGACAGTCCCTTCAGCCTGGTAAGACCACAACGTCAGGGGGAGG
GGAAAAGAGAGGCGTC
mm4_intergenic_Ube3b|Mmab_chr5_114428527 GGACTTGAAAGCCTGGGACATACCCTCTCAAGACTGTCATCAGTGGTGCCAAGTTGTCCTGAAACTCATGCCTGCCTCCT
CTCCCCCGCACTGGGGACTC
ATGTTTTTCTCCCATGACTTCACCAGGTGGAAAGCC
mm4_intron_Snph_chr2_151605690 ACTATGCAGGTTTCAGGGCGGTCTCATCCCCCCCCCCCCCCTCCGCAGACTCGAGTCCAGCCTTCCTGCACTTAAGCTGG
CAGGAGTTGGG
mm4_intergenic_Col13a1|Gm5424_chr10_62014124 CCCCTGACACAGAAAGCCAACCCCCCTCCCCTTAGACTCTGCAGTGGAGGGGTGAGGACCACCCTGTCTGTCAGAAGCTC
TACTTAGGAGAGTAGGGATGACAGGCTCCAAGGAC
mm4_intergenic_Trhr2|Gm20681_chr8_122363271 GTCCCAGGGCCAATCTGTACCAACATCAGCAGCCTAGGTCTCTCCAGCAGGGGGGCGGGGAGGGGAAGCATGGACACTGT
CCTCTTGGGCTTG
mm4_intergenic_Gm7931|Slit2_chr5_47064396 TGTAGTCAGATGATAGGCATTTGCCTCCCCCTCACCCCTTGTGGACAGTCAAGGTTTGAGCAGATTTCATTACTAAATTA
ATAACCAAAACTTTGCAGCTTCT
mm4_intergenic_Gm26497|Piezo1_chr8_122548804 ATGGGACTAGGGCATCACCTTGCCTGACTTTCCAGATTAGGGGAGTGGCAAAGAGGCTAAGCACCCCA
mm4_intron_Podxl2_chr6_88869875 CCATCAAGGGACAAAGCCCAGTACCCCTCCCCCACTCTTCACAGTCGAAATCATTCCCTGAATGCTCTGTGC
mm4_intergenic_Bcl11b|Setd3_chr12_108088579 CAGAAAAGGGTAGCCAGCCACCACATTCGTGGGACTCAGAGACTCCAGTGGAGGGGAGAGGAGAGTGGAATGAAGAGGAC
CCAGGGAGG
mm4_intergenic_Gm10617|Gm25200_chr8_117826721 GCGACTCCTTTATGGGAAATGTGAGTCTTCAGAGGGGGTGTGGGGGAAAGGAGAGGGACCCCAGTATTTTAACATCTACC
CAATTTCATATCTTCCCCCTACCCCCCAACAGCTCAATGATTGGCATCTCCTGGGAACTG
mm4_intergenic_Tmem200c|Epb4.1l3_chr17_68983121 GGCCAACCCTAGCAAATACTCTGCAAGCATAAGAGGTATTTATCATTAAAAGGGACTCTCCAGAAGCGGTGTGTGGACCA
AAACAATAAGCAGAGTGCATGTCTGCTCAGGAGGTAGAGTTTGGGCAGGGGTACATGA
mm4_intergenic_Anapc15-ps|4732465J04Rik_chr10_95790613 AGCCATAGATGAATGTTTCCAGGAAATCTGGAGAGTCCAATAAAAATGTCCCCCCCTGACCCCCGCTCCCCAGCTCTGGA
GTGTA
GCTGTGAAGACGTTATCCTCAGATCAACCACCAGTGT
mm4_intron_Hunk_chr16_90474262 CACAGAGAGCCCTTCCTGTGTTTAGCAACCTCTTCAGTGATAAAGATTTACAATATGGCTTATAGTTTTCTAGCCTCTCC
ACAGGGGGCTAGAGG
CAGGCTTTGGTGAGGTAAACACT
mm4_intron_Syn3_chr10_86365224 CTCCACTTGCCAAAAGACGGCTGTTTTACTGCCATGGAAGTCTGTTACTGACTCTCTAGCAGGTGGGAGAGGGGATGTGG
AGAGTTATTAAGCCTCTTAGTTGTCTGGGGATGCAGTTGCTCAAGGTGACA
mm4_intergenic_Eif4g2|Galnt18_chr7_111283753 GGCACATCTGGCAATCTGGATACTGCAGCAGACAACTCCATTAGCAAATAGACACTCCACGGGGGGGGGGGGGGAGCAGG
GTTAGTTACCGTTCCACTGAGAACCGTGA
mm4_intron_Lep_chr6_29070429 AAGAGTCATCAGGGCTGCACATGGAGAGGCCCAACTACCCAAATGTGGGTGGAAATGAGAGGAAGCCAGTGGGAAAAGCC
CTTCCTGGTAACCAGACTCAGCAGAGTGGGGGGGGGGGGCACGGCTTTGACCCTAATG
mm4_intergenic_Gm10612/Cbfa2t3|Acsf3_chr8_122770617 ACAGTCTGAGCATGACGGTGCATGGGCACATGTGGGGACGTGACTGGGCAGAGGGGGTGAGGGGCAAAGGCTAATGTCTG
TGGCCAGGTGGTGGATACTCAACCAGGCTTGTCTGGCCAGGCACTTCTTGGGGATT
mm4_intergenic_2810442N19Rik/Dnm3|Pigc_chr1_162022338 GCTGAATGAACAAGGCACACTGACTCTCCAGGTTGGGGGGGGGGGGACTATATTATTTGATTTCGTACCTCCCCATTCCA
CA
mm4_intergenic_Blcap|2410019O14Rik_chr2_157591169 TCCCTCTCCCTCTAGTCTGCTGACCTTAGGATTCCCCAGTGGGTGGGAGTGGATGGGTTTCTATGCGTGTAAAGATGAGG
TCTGGAAAGAAGAGAGGTGAGAGTCTGGTGGA
mm3_intergenic_Gm22217|Gm22448_chr16_66039692 AGCCTCTGTCAATTTAAGCTCTCTCCTCTCTCTCTCCCCCCCTCTGGTGTGTTTGAAGCACAGTTTGAATCTAAATAAAG
TACTTAGTTTTCCAATGATGTGCATGATTGCGACTAAATGCTACT
mm4_intergenic_Gm24070|Gm24994_chr12_77906179 GGGAGAGAACAGGAGGCCTAAAGTCTACTTCAGGAGTAGAGAACGGTATGTTTCCCCCTCCCCAGCTCTGCAGTGTCCCC
GCTCCCTCTTAGCTAATC
mm4_intergenic_Smoc2|Thbs2_chr17_14427151 TCTCTCCCACAGTGGAGACACATGGGAGTCTCCTTGTTCTCTAAGGGAGTCCAGTTTTTGAATGTAGAAGTGTGACTCTT
CACACGGTGGGAGAGG
GTATCTGGAGAGAGAGACGTGCA
mm4_intergenic_Gm12721|1700024P16Rik_chr4_104974638 TGTAGGCGTTGAACCTGTGTACCCACTCCCACCCTCTTGAGTCTCCTCAGATTGAGTCCTTTGGGGTAGCTGATATTCTA
AATGGAATTGTGTCACAAGGCCG
mm4_intergenic_Atl2|Hnrnpll_chr17_79935972 ACACACACTCTGCAGGAAGCAGGTTTTTAAAAGCATTTGGTCAAAGATTTGGTTTATTAAGTTTCCAAAGGGGGGGAGGG
A
ATAGGATATAAAGAAACAGCAACATACAGCATGAAATAAGCATGTGGT
mm4_intergenic_Ufm1|Trpc4_chr3_53896482 GCTTGTCCATTCTGGGTCACTGATGATACAGGAGCAAAAGAATGAGACTCCAGAGGGTGGGGGTGGAAGAGGAAGGGGAA
GACGTGGGAGCTCTGGTGTGTGCACTGTCTAGACCTGAGAGCATGTCTAGATGGGAGGCC
mm4_intergenic_Gm12829|9130410C08Rik_chr4_114798687 CCCATGCGAGGTGTGTATGAATGGAGACACCAAAGCCCCCGCCCACTCACTGGAGAGTCACTGAAGCAGACCAGATCACT
TAGTACTCCAGAGAACAGAAATTACGGGTCTCTCCAGGAGAGCTGAACTGA
mm4_intron_Vps4b_chr1_106796376 GGCCGCTTCTCAGTCCCCCGCCCCCACTCCTTCCCCGCGGGCTCCGGCTCTCCAGAGGGGCCCAGAGGAGCCCAGAAGGA
CCGCGGTACCTGCAGGTTGGTGTTCGTGGACGCCATGGTGGAGATCCGAG
mm4_intron_Scai_chr2_39077496 TCTGTGATGCAGTGGTTCCCAGACTCACCAGAAGGGTAGAGAGGAAAACATTCTGGAATGATGCTGTTGTATGGTG
mm4_intron_Fhod3_chr18_24869780 GGGTAGAGGGCAGGGATGTAGTTGGTGCCCTCCCCACCCCTCTGCAGAGGCTCAGCCCAGATTTTGCTGTTGCTGGTGTC
CTGAGGCGCACACAGGCTTATGTGTCCTGCAGGCCTTTCTCAGTT
mm4_intergenic_Tnfrsf19|Sacs_chr14_61071166 TCTGTTTCAAAAGCCCAGGGAAATACTTCATCAGAGCCTGCAGAGGGGTGGAGCGGGATAGCTCAGGGACAGAGCGCCTG
CTAACAGGCATGGGGCCAGCCCTGGGCCCAACCTCCAGCACCAAAACCA
mm4_intergenic_Shc1|Pygo2_chr3_89430021 GACAAGGAATGGTCGCCAAATTTTTGGTTTGGATGTCTTATACCAAAGGGAAATAGTCTTCATTAAAGTTCGTATTTCTT
TTACCTCGGCCTCTCAACTCCTCTGGAAAGTCTGATTGATGGGGGCTGTCTGTGGGAGGT
mm4_intergenic_Neurl1b|Dusp1_chr17_26458197 TACGCGATGTCAACACTGCTTAATTTTCTCAGTCTGGGCTTCTGACTCCACTGAGGGGTGGAGGGGACAGTTGCGTCAGC
CTGGGCCACCTAGAGCACAGCTCTATGAGCTCTCTCGCTTTGAGAAGCCCTGACAGACAG
mm4_intergenic_Lrfn2|Gm22978_chr17_49253813 GGCTCCCAAATCCACCTTGAAACACTCCCCAAAGCTTAGCTAACGAAAGGTCCTCATCTACTAACCGCCCCCGCCCCGCC
CCTCTGTATAGTC
TAGTAACCTCTTGAGACCATGCAACTGGAGCAGGATTATGGGCAGCT
mm4_intergenic_Gm9341|Gm24444_chr7_136449762 CCACCCAGGTTGTTGCCACCCTCTCCATCCCTCTGGAGAGAGTTGTAAAGTTCTGTATGAGTTGGTCTCAGAGCATGCC
mm4_intergenic_Gm831|Gm12962_chr4_131577328 CGTTGTTGCGTTTGTCTGGTCGAGGTGGCAGACTCCGCAGAGGGCTGGAGGGGAAGGCGCTGCTGATTTGGTGAAG
mm4_intergenic_Gm6404|Isl1_chr13_116296147 TGAGAAACAGGAGAGTGGGGGGCAAAGACAATAGCAAATAAGGGGTTTGTTTAGAAGAAGGGTGCTCAAAACTGAGTCTC
CAGAGGTGTGCAGAGG
AAAGGAAAGAGGGAACCAGGATAATCTGCAAACAGGAAGGCATG
mm4_intergenic_Gm20476|Stard10_chr7_101320365 CAGGGCTCCCAGAATGGAAGAGTAGGCAGAAGAGTTAGTGGACAGAATTTACATCAGGCTACAGAGTAGAGCTCTGGTCC
ACTCTATTCTACAGAGGGGTGGAGGGGGCCTGTGCTCCAGTGTTCTGCAG
mm4_intergenic_Dgat2|Mogat2_chr7_99188114 CCCATGGACAGAAGAGCCAAAGGGAGAAGGCTCTACAGAGGGGTGGTGAGGGGAAACGACTGCCCAATAGGAGCTGGGGG
CAAAGACAACCCATGGTAACCTGGCAG
mm4_exon_RP24-289J12.1_chr15_75645967 TGAGGCTCCTACAGGACAGGGACCTGGCTGCTCCTGGCACTCCTGGCACACACACACACACCCAGCCTCTCCACCCCTCT
GAATAGTG
CCCCATTCAGGCTTTCCCTGGGCTCAGCTCCCAGAGTGCCACAGTAG
mm4_exon_Gmfg_chr7_28448102 AGGTGACTCGCCCAATCAAGAGCAAATCTGGAAAGCAAAGACTAACCAAAGGGGCGGAGGGGTGGTTCGATGGGTTCAGT
CTTTTAAGAAGTACCAGCACCCTGATGT

Input file for Crispresso

Crispresso, written by Luca Pinello, is a software package to quantify the Cas9-induced mutations on off- or on-targets.

Click here to download an amplicon input file for Crispresso. For each off-target, it includes the off-target name, its PCR amplicon and the guide sequence. Keep a copy of this file.

After sequencing, run CRISPRessoPooled. The tool will map the reads to the amplicons and analyse the mutations:
CRISPRessoPooled -r1 Reads1.fastq.gz -r2 Reads2.fastq.gz -f crisporAmplicons_mN1FkRligAThyqKv3eg3.txt --name MY_EXPERIMENT

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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.