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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313774_F | TCGTCGGCAGCGTCCCTTGTCGCCTTAGCTCCTC | 60.1 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313774_R | GTCTCGTGGGCTCGGGTCCTTTCGGCTCTCCATCC | 60.1 | 1.00 |
| mm4_exon_Lrrc31_chr3_30683706_F | Primer3: not found at this Tm | N.d. | 0.84 |
| mm4_exon_Lrrc31_chr3_30683706_R | Primer3: not found at this Tm | N.d. | 0.84 |
| mm3_intron_Gramd1b_chr9_40460073_F | Primer3: not found at this Tm | N.d. | 0.80 |
| mm3_intron_Gramd1b_chr9_40460073_R | Primer3: not found at this Tm | N.d. | 0.80 |
| mm3_exon_H2-T3_chr17_36186476_F | TCGTCGGCAGCGTCCCAGTGACCCAGTCCTTTCC | 59.9 | 0.53 |
| mm3_exon_H2-T3_chr17_36186476_R | GTCTCGTGGGCTCGGCAGGCAAGGACAGCTTCTCT | 59.6 | 0.53 |
| mm4_exon_Rnf11_chr4_109454162_F | TCGTCGGCAGCGTCCATCTGCAGCCATCCAGGAA | 60.1 | 0.52 |
| mm4_exon_Rnf11_chr4_109454162_R | GTCTCGTGGGCTCGGCCAGGGTCTCTCGTCTGACT | 60.3 | 0.52 |
| mm4_intron_Glb1l3_chr9_26860041_F | TCGTCGGCAGCGTCCCTGTGGCAAAGGACATCCA | 60.2 | 0.48 |
| mm4_intron_Glb1l3_chr9_26860041_R | GTCTCGTGGGCTCGGTGGAACCGGGTAGAGCTACA | 59.9 | 0.48 |
| mm4_exon_9130213A22Rik/Hes7_chr11_69121380_F | TCGTCGGCAGCGTCAGTAGCAGGGAGTGAGAGGG | 60.0 | 0.45 |
| mm4_exon_9130213A22Rik/Hes7_chr11_69121380_R | GTCTCGTGGGCTCGGGATCCTGCCGCTGGGAAAA | 60.3 | 0.45 |
| mm4_intron_Myo3b_chr2_70138786_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intron_Myo3b_chr2_70138786_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intergenic_Agtr1b|Gm7488_chr3_20729961_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intergenic_Agtr1b|Gm7488_chr3_20729961_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intron_Eri3_chr4_117668948_F | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intron_Eri3_chr4_117668948_R | Primer3: not found at this Tm | N.d. | 0.41 |
| mm4_intergenic_Atg4a-ps/Syt6|Gm25325_chr3_103646809_F | TCGTCGGCAGCGTCCCAAGAAACCCAACCCCACT | 60.1 | 0.41 |
| mm4_intergenic_Atg4a-ps/Syt6|Gm25325_chr3_103646809_R | GTCTCGTGGGCTCGGGTGGACAGAGGAATGGTCCC | 59.7 | 0.41 |
| mm3_intergenic_Gm11204|Utp6_chr11_79924171_F | TCGTCGGCAGCGTCAAGGCTGGTTAACCTCTGGC | 59.9 | 0.39 |
| mm3_intergenic_Gm11204|Utp6_chr11_79924171_R | GTCTCGTGGGCTCGGCCTCCCGAGTCTCATGCTTC | 59.8 | 0.39 |
| mm3_intergenic_Gm10699|Dlgap2_chr8_14093790_F | Primer3: not found at this Tm | N.d. | 0.38 |
| mm3_intergenic_Gm10699|Dlgap2_chr8_14093790_R | Primer3: not found at this Tm | N.d. | 0.38 |
| mm4_intron_Hipk2_chr6_38702543_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intron_Hipk2_chr6_38702543_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm8835|Gm5682_chr17_36210184_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Gm8835|Gm5682_chr17_36210184_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intron_Hdac10_chr15_89124075_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intron_Hdac10_chr15_89124075_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Gm5423|Mcm9_chr10_53509704_F | TCGTCGGCAGCGTCTGGGCCATTGGAGTGGTATG | 59.7 | 0.31 |
| mm4_intergenic_Gm5423|Mcm9_chr10_53509704_R | GTCTCGTGGGCTCGGAAGTGCAGTCTGGTTTGGGA | 59.4 | 0.31 |
| mm4_intergenic_Gm26069|Gm25811_chr4_85976536_F | TCGTCGGCAGCGTCTTGTCAGCAAGAGGAGCTCC | 59.6 | 0.31 |
| mm4_intergenic_Gm26069|Gm25811_chr4_85976536_R | GTCTCGTGGGCTCGGGGAGGTCGCTGACAGATCTG | 59.8 | 0.31 |
| mm4_intergenic_Gm22434|Prrx1_chr1_163190937_F | TCGTCGGCAGCGTCTCTGCCAAGGCTGCAATCAT | 60.3 | 0.31 |
| mm4_intergenic_Gm22434|Prrx1_chr1_163190937_R | GTCTCGTGGGCTCGGGGGAGGGAAGAAAGCCTCTC | 59.4 | 0.31 |
| mm4_intron_Limd1_chr9_123491122_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Limd1_chr9_123491122_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Epsti1_chr14_77969926_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Epsti1_chr14_77969926_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Rhoh_chr5_65875830_F | TCGTCGGCAGCGTCTTCCCCAGCAGCAGAATCTG | 60.0 | 0.29 |
| mm4_intron_Rhoh_chr5_65875830_R | GTCTCGTGGGCTCGGTACAGCACTCACTGGTCACA | 58.5 | 0.29 |
| mm3_intron_Map4k3_chr17_80684301_F | TCGTCGGCAGCGTCTGCTTTCAGAGGGTCTGTCAC | 59.9 | 0.28 |
| mm3_intron_Map4k3_chr17_80684301_R | GTCTCGTGGGCTCGGCCACTGGAAAGAGAGCACCA | 59.6 | 0.28 |
| mm4_intergenic_Csnk2a2|Ccdc113_chr8_95527285_F | TCGTCGGCAGCGTCTTGTTCTGCAGCAACGTGTG | 59.9 | 0.28 |
| mm4_intergenic_Csnk2a2|Ccdc113_chr8_95527285_R | GTCTCGTGGGCTCGGTCCCAGGCTCTGCTCTAGTT | 59.9 | 0.28 |
| mm4_intergenic_Gja8|Gja5_chr3_96968804_F | TCGTCGGCAGCGTCGGGGCACAAATCATGGGGA | 59.9 | 0.27 |
| mm4_intergenic_Gja8|Gja5_chr3_96968804_R | GTCTCGTGGGCTCGGTCCAACATAACCGTGGTGACT | 59.3 | 0.27 |
| mm3_intron_Celf4_chr18_25752613_F | TCGTCGGCAGCGTCGGCTTACCTTTCAAAATGCACCT | 59.9 | 0.27 |
| mm3_intron_Celf4_chr18_25752613_R | GTCTCGTGGGCTCGGTTAGCAGGGAAAGAGCCGTC | 59.7 | 0.27 |
| mm3_intergenic_Evx2|Hoxd13_chr2_74665450_F | TCGTCGGCAGCGTCTCAGCAGTCTGGCTCAACAG | 59.9 | 0.27 |
| mm3_intergenic_Evx2|Hoxd13_chr2_74665450_R | GTCTCGTGGGCTCGGCTGAAAGGGCCCACAGGTAG | 60.0 | 0.27 |
| mm4_intergenic_Gm13327|Gpr158/Gm13327_chr2_21346151_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm13327|Gpr158/Gm13327_chr2_21346151_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm12805|Agbl4_chr4_111323837_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm12805|Agbl4_chr4_111323837_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Kirrel|Gm10705_chr3_87198233_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Kirrel|Gm10705_chr3_87198233_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm25905|Dcp1b_chr6_119074953_F | TCGTCGGCAGCGTCGAGCCGAGCAAGAGTCAAGT | 60.0 | 0.25 |
| mm4_intergenic_Gm25905|Dcp1b_chr6_119074953_R | GTCTCGTGGGCTCGGACGTGGACAAAGCAGAGAGG | 59.9 | 0.25 |
| mm4_intron_Dgkg_chr16_22482606_F | TCGTCGGCAGCGTCCAAGCCATTGCGGATCACAG | 59.9 | 0.24 |
| mm4_intron_Dgkg_chr16_22482606_R | GTCTCGTGGGCTCGGATCAAAAGCTCTGGCCACCA | 59.8 | 0.24 |
| mm4_intron_Myrip_chr9_120433040_F | TCGTCGGCAGCGTCAACCCGCAAGCACACAGATA | 59.9 | 0.24 |
| mm4_intron_Myrip_chr9_120433040_R | GTCTCGTGGGCTCGGAGCCCAAGTGACAACTCAGG | 59.8 | 0.24 |
| mm3_intergenic_Cadm2|Gm24681_chr16_68382183_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_Cadm2|Gm24681_chr16_68382183_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Spsb1_chr4_149923424_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Spsb1_chr4_149923424_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Igsf11|Gm24795_chr16_39151748_F | TCGTCGGCAGCGTCGCTCTAGACTCAGGAGGTGC | 59.2 | 0.23 |
| mm4_intergenic_Igsf11|Gm24795_chr16_39151748_R | GTCTCGTGGGCTCGGACAAATAGTGCATTCCCAGGC | 58.8 | 0.23 |
| mm4_intergenic_Epha8|Zbtb40_chr4_136969987_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Epha8|Zbtb40_chr4_136969987_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Nrsn2|Sox12_chr2_152378347_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Nrsn2|Sox12_chr2_152378347_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Maml3|Gm10728_chr3_51876195_F | TCGTCGGCAGCGTCGCTGTTCCCTGGTCTTTCCA | 59.8 | 0.23 |
| mm4_intergenic_Maml3|Gm10728_chr3_51876195_R | GTCTCGTGGGCTCGGAGAGTAGCTCAGACTCCGCA | 60.0 | 0.23 |
| mm4_intergenic_Prima1|Fam181a_chr12_103286941_F | TCGTCGGCAGCGTCCAAGCTGCCTCCACTGAGAA | 59.9 | 0.23 |
| mm4_intergenic_Prima1|Fam181a_chr12_103286941_R | GTCTCGTGGGCTCGGACCTTCCTCTCCCCTACCAC | 59.9 | 0.23 |
| mm4_intergenic_Dscaml1|Gm22069_chr9_45615325_F | TCGTCGGCAGCGTCGGCCTCCTTCTTCACACAGG | 60.3 | 0.22 |
| mm4_intergenic_Dscaml1|Gm22069_chr9_45615325_R | GTCTCGTGGGCTCGGCAGTAGATGGCTAGCGCTCC | 60.0 | 0.22 |
| mm4_intergenic_Kcnn4|Smg9_chr7_24388691_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Kcnn4|Smg9_chr7_24388691_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Eepd1|Gm25346_chr9_25555267_F | TCGTCGGCAGCGTCGCCCTGCTTTGGTGTTTTCT | 59.2 | 0.22 |
| mm4_intergenic_Eepd1|Gm25346_chr9_25555267_R | GTCTCGTGGGCTCGGGCACTAGGTTCTGGCTGGAA | 59.6 | 0.22 |
| mm4_intergenic_Gm23816|Serpine3_chr14_62648232_F | TCGTCGGCAGCGTCTGGCTTTCCCATAGCCACAT | 59.3 | 0.21 |
| mm4_intergenic_Gm23816|Serpine3_chr14_62648232_R | GTCTCGTGGGCTCGGGTGGCATGGTCACAGGAAGA | 59.9 | 0.21 |
| mm4_intergenic_Smpd3|Gm10629_chr8_106272957_F | TCGTCGGCAGCGTCCCTAGGTCTTTGCCTGAGCC | 60.1 | 0.21 |
| mm4_intergenic_Smpd3|Gm10629_chr8_106272957_R | GTCTCGTGGGCTCGGAGTCCCATGGCTTCTGCTTC | 60.0 | 0.21 |
| mm4_intron_Sulf2_chr2_166109059_F | TCGTCGGCAGCGTCGATGCCTGGATCTGAGAGCC | 59.9 | 0.21 |
| mm4_intron_Sulf2_chr2_166109059_R | GTCTCGTGGGCTCGGGGACTTCTGTTCCAGCCTCC | 60.0 | 0.21 |
| mm4_intron_Stk32c_chr7_139165067_F | TCGTCGGCAGCGTCACCAGATCCACTCAGCTGTG | 59.3 | 0.21 |
| mm4_intron_Stk32c_chr7_139165067_R | GTCTCGTGGGCTCGGAGAGAAGCTGAGGCAAGCTG | 60.0 | 0.21 |
| mm4_intron_Klk14_chr7_43692166_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Klk14_chr7_43692166_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm3_exon_Gm16150_chr1_38245661_F | TCGTCGGCAGCGTCCACTGTGCATGCTGACACAC | 60.0 | 0.20 |
| mm3_exon_Gm16150_chr1_38245661_R | GTCTCGTGGGCTCGGCCTGAACACTGGGTAAGGCA | 59.6 | 0.20 |
| mm4_intergenic_Sox18|Tcea2_chr2_181678079_F | TCGTCGGCAGCGTCTGCCTGTCCTTTTCAGACCT | 58.8 | 0.20 |
| mm4_intergenic_Sox18|Tcea2_chr2_181678079_R | GTCTCGTGGGCTCGGGTCTGCCCCTGAAGTGGATC | 60.1 | 0.20 |
| mm4_intron_Spock1_chr13_57657910_F | TCGTCGGCAGCGTCCAGGTTCTGGGCAGCTGTAA | 59.9 | 0.19 |
| mm4_intron_Spock1_chr13_57657910_R | GTCTCGTGGGCTCGGCCCTGAACATCTACCGTGTGA | 59.4 | 0.19 |
| mm3_intron_Snx9_chr17_5892691_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intron_Snx9_chr17_5892691_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gdap1|Gm25166_chr1_17506722_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gdap1|Gm25166_chr1_17506722_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intergenic_Hsfy2|Satb2_chr1_56781136_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intergenic_Hsfy2|Satb2_chr1_56781136_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Man1a_chr10_54022728_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Man1a_chr10_54022728_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Mobp|Myrip_chr9_120217146_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Mobp|Myrip_chr9_120217146_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Hivep3_chr4_119889410_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Hivep3_chr4_119889410_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Qk|Pacrg_chr17_10347969_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Qk|Pacrg_chr17_10347969_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_2410004I01Rik_chr11_102963782_F | TCGTCGGCAGCGTCGGTCCCCTCACTCTAGAGCA | 60.0 | 0.17 |
| mm4_intron_2410004I01Rik_chr11_102963782_R | GTCTCGTGGGCTCGGCGTGCCGGCCCTTTAATTAG | 59.3 | 0.17 |
| mm4_intron_Pdgfra_chr5_75156442_F | TCGTCGGCAGCGTCCGACCCTTGTCCCAGTAGC | 59.7 | 0.16 |
| mm4_intron_Pdgfra_chr5_75156442_R | GTCTCGTGGGCTCGGAAACTCAAGAGCGACCCAGG | 59.9 | 0.16 |
| mm4_intergenic_Gm22529|Gpr37_chr6_25583906_F | TCGTCGGCAGCGTCAGTAACTGTAGCTGCCCTGC | 59.7 | 0.16 |
| mm4_intergenic_Gm22529|Gpr37_chr6_25583906_R | GTCTCGTGGGCTCGGTCCACGCCCTAAATACTGC | 57.2 | 0.16 |
| mm3_exon_Gm15506_chr7_98693242_F | TCGTCGGCAGCGTCTACAGCACTGACGTGTGACC | 59.9 | 0.16 |
| mm3_exon_Gm15506_chr7_98693242_R | GTCTCGTGGGCTCGGGGCCTTCGTTATTGCTGTCG | 59.6 | 0.16 |
| mm4_intergenic_Spert|4930564B18Rik_chr14_75619143_F | TCGTCGGCAGCGTCCCTAGCTGTGCTAACACCCC | 60.1 | 0.15 |
| mm4_intergenic_Spert|4930564B18Rik_chr14_75619143_R | GTCTCGTGGGCTCGGAAGGCCCTAAGAGACACCCT | 59.8 | 0.15 |
| mm4_exon_Gpn1/4930566F21Rik_chr5_31494794_F | TCGTCGGCAGCGTCGGAATTCAGAGAGCCCGCAG | 60.8 | 0.15 |
| mm4_exon_Gpn1/4930566F21Rik_chr5_31494794_R | GTCTCGTGGGCTCGGCAACACCAACAGACACACGG | 59.6 | 0.15 |
| mm4_intron_a_chr2_154966030_F | TCGTCGGCAGCGTCAGAAAGCTCTGTGTCTTCATGG | 58.3 | 0.15 |
| mm4_intron_a_chr2_154966030_R | GTCTCGTGGGCTCGGGAGAGACACGGTCCTTGCC | 60.0 | 0.15 |
| mm4_intergenic_Gm26327|Gm6851_chr7_39917617_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm26327|Gm6851_chr7_39917617_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm23584|Gm24256_chr10_48491126_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm23584|Gm24256_chr10_48491126_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Ephb1|n-R5s88_chr9_102107859_F | TCGTCGGCAGCGTCGGTAGTACCGGCTTTGATGCT | 60.1 | 0.14 |
| mm4_intergenic_Ephb1|n-R5s88_chr9_102107859_R | GTCTCGTGGGCTCGGGGGCCCTTTTGAGCACAAAG | 59.9 | 0.14 |
| mm4_intron_Nfam1_chr15_83032530_F | TCGTCGGCAGCGTCGGTGCGCTGGCCTAGATAAA | 60.1 | 0.14 |
| mm4_intron_Nfam1_chr15_83032530_R | GTCTCGTGGGCTCGGGGCCAACACTGCTGTCCTAT | 60.0 | 0.14 |
| mm3_intron_Ttll12_chr15_83586644_F | TCGTCGGCAGCGTCACAGCCAGATCTAACTGCACA | 59.3 | 0.14 |
| mm3_intron_Ttll12_chr15_83586644_R | GTCTCGTGGGCTCGGGATGGAGGAGGCTTACCGTG | 59.8 | 0.14 |
| mm4_exon_Brsk1_chr7_4710792_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Brsk1_chr7_4710792_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm13865|Vav3_chr3_109234325_F | TCGTCGGCAGCGTCGTTGTGTTCAGACTTTGTCCCA | 58.9 | 0.13 |
| mm4_intergenic_Gm13865|Vav3_chr3_109234325_R | GTCTCGTGGGCTCGGAACGGTTGACTGGGTTGAGT | 59.4 | 0.13 |
| mm4_intergenic_n-R5s196|Maml3_chr3_51854364_F | TCGTCGGCAGCGTCTAAAGGCACAGAGCTCAGGC | 60.0 | 0.12 |
| mm4_intergenic_n-R5s196|Maml3_chr3_51854364_R | GTCTCGTGGGCTCGGACTCTCACCCCACCCTCATT | 60.1 | 0.12 |
| mm4_intron_E330012B07Rik_chr6_147196502_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_E330012B07Rik_chr6_147196502_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Dclre1c_chr2_3444416_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Dclre1c_chr2_3444416_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intron_Frk_chr10_34547657_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intron_Frk_chr10_34547657_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Cad_chr5_31077529_F | TCGTCGGCAGCGTCAGTGTACGGGACTTTGTGGC | 60.2 | 0.12 |
| mm4_intron_Cad_chr5_31077529_R | GTCTCGTGGGCTCGGTAAGGAGGGAGCTGGGTGAA | 59.8 | 0.12 |
| mm4_intron_Tifab_chr13_56177779_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Tifab_chr13_56177779_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm2_intergenic_Ccr3|Ccr2_chr9_124051332_F | TCGTCGGCAGCGTCAGAGGGGAGTTCAGCTCGTA | 59.6 | 0.11 |
| mm2_intergenic_Ccr3|Ccr2_chr9_124051332_R | GTCTCGTGGGCTCGGATGGAGAGGCAGGAGAGAGG | 60.1 | 0.11 |
| mm4_intergenic_Btg1|Gm24587_chr10_96635187_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Btg1|Gm24587_chr10_96635187_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Barx1|Phf2_chr13_48742535_F | TCGTCGGCAGCGTCAGCTCTTCTGTCTTAAAGGCAT | 57.4 | 0.11 |
| mm4_intergenic_Barx1|Phf2_chr13_48742535_R | GTCTCGTGGGCTCGGTTCTCTTGCCCTCCCTGTCT | 60.1 | 0.11 |
| mm4_intergenic_Bambi|Gm23643_chr18_3763763_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Bambi|Gm23643_chr18_3763763_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Gm14661/Gm14651|Gm14661_chrX_60661157_F | TCGTCGGCAGCGTCTGCAGCCTAAGTGTAGTGCT | 59.0 | 0.11 |
| mm3_intergenic_Gm14661/Gm14651|Gm14661_chrX_60661157_R | GTCTCGTGGGCTCGGGGTGTGAGATGCATGGTCCA | 60.0 | 0.11 |
| mm4_intron_Scd4_chr19_44339144_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Scd4_chr19_44339144_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Slc9a2_chr1_40765808_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Slc9a2_chr1_40765808_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Cpeb1|Ap3b2_chr7_81458156_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Cpeb1|Ap3b2_chr7_81458156_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Map3k12_chr15_102501491_F | TCGTCGGCAGCGTCGCAAGCATCCCAAGCTGAAG | 59.8 | 0.11 |
| mm4_exon_Map3k12_chr15_102501491_R | GTCTCGTGGGCTCGGCCCATGAGCCTGGAGGACTA | 60.3 | 0.11 |
| mm4_intron_Nav2_chr7_49235115_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Nav2_chr7_49235115_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Itsn1_chr16_91887529_F | TCGTCGGCAGCGTCTACGTGAACGACTTGCAGCT | 59.9 | 0.10 |
| mm4_intron_Itsn1_chr16_91887529_R | GTCTCGTGGGCTCGGAAGGCTCAGAGACAGGGCAT | 60.9 | 0.10 |
| mm3_intergenic_Gm3756|Arhgap32_chr9_31972787_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_intergenic_Gm3756|Arhgap32_chr9_31972787_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm23437|Gm24818_chr14_108261508_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm23437|Gm24818_chr14_108261508_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Ptprg_chr14_11597957_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Ptprg_chr14_11597957_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Ell2|Glrx_chr13_75786308_F | TCGTCGGCAGCGTCGAATCGTGAGCCTGAGGGAC | 60.1 | 0.10 |
| mm4_intergenic_Ell2|Glrx_chr13_75786308_R | GTCTCGTGGGCTCGGGCGGACAAGAAGGTGACGTA | 60.0 | 0.10 |
| mm4_intergenic_Cep112|Axin2_chr11_108876933_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Cep112|Axin2_chr11_108876933_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Upf3b_chrX_37093002_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Upf3b_chrX_37093002_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Kif26a_chr12_112165466_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Kif26a_chr12_112165466_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Ly6h|Gpihbp1_chr15_75581983_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Ly6h|Gpihbp1_chr15_75581983_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Cdk5rap2_chr4_70220882_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Cdk5rap2_chr4_70220882_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Muc6|Muc2_chr7_141655725_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Muc6|Muc2_chr7_141655725_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Gm14574|Gm14576_chrX_40823135_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Gm14574|Gm14576_chrX_40823135_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Dagla_chr19_10246187_F | TCGTCGGCAGCGTCAAAGACTCAGGCCCAGATGC | 60.0 | 0.09 |
| mm4_exon_Dagla_chr19_10246187_R | GTCTCGTGGGCTCGGCCTTGGAAGCATGGTCCCTT | 59.9 | 0.09 |
| mm4_intergenic_Gm25173|Gm11914_chr4_27842543_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm25173|Gm11914_chr4_27842543_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Prkcb_chr7_122412183_F | TCGTCGGCAGCGTCATGAGGGCAGGGTGTTGATG | 60.0 | 0.09 |
| mm4_intron_Prkcb_chr7_122412183_R | GTCTCGTGGGCTCGGTCACAGTTTGACAGGTGCCC | 60.4 | 0.09 |
| mm4_exon_Anks1b_chr10_90967132_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Anks1b_chr10_90967132_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm26321|Gm13597_chr2_68526400_F | TCGTCGGCAGCGTCCTCAGTGTCGGCCTTCCATT | 60.0 | 0.08 |
| mm4_intergenic_Gm26321|Gm13597_chr2_68526400_R | GTCTCGTGGGCTCGGCATAGTACACGCGCATGTGC | 60.0 | 0.08 |
| mm3_intergenic_Gm10355|Igsf3_chr3_101376847_F | TCGTCGGCAGCGTCTGCTATTGTTTACCGGGCGA | 59.7 | 0.08 |
| mm3_intergenic_Gm10355|Igsf3_chr3_101376847_R | GTCTCGTGGGCTCGGCACCTGGGATGAGCTGATGG | 60.1 | 0.08 |
| mm4_intron_Sil1_chr18_35455981_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Sil1_chr18_35455981_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intron_Adcy8_chr15_64736579_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intron_Adcy8_chr15_64736579_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Slc7a1|Ubl3_chr5_148409047_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Slc7a1|Ubl3_chr5_148409047_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm4889|Dusp4_chr8_34352838_F | TCGTCGGCAGCGTCGGGTGTCCCAAACTGAGATGT | 59.9 | 0.08 |
| mm4_intergenic_Gm4889|Dusp4_chr8_34352838_R | GTCTCGTGGGCTCGGCTCAGCAGAGATGGGGCAAA | 60.0 | 0.08 |
| mm4_exon_Kif26a_chr12_112177083_F | TCGTCGGCAGCGTCCTGTTTGAGGACCCTTGGCT | 59.8 | 0.08 |
| mm4_exon_Kif26a_chr12_112177083_R | GTCTCGTGGGCTCGGGCACAAGCCAGCATCATCTG | 59.8 | 0.08 |
| mm4_intron_A4galt_chr15_83228692_F | TCGTCGGCAGCGTCACGTTTCCTACTGACGCCAG | 60.0 | 0.08 |
| mm4_intron_A4galt_chr15_83228692_R | GTCTCGTGGGCTCGGTGTCACAGATGAGCAGCCAG | 60.0 | 0.08 |
| mm4_intron_Cyp2c29_chr19_39328177_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Cyp2c29_chr19_39328177_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Cacng3_chr7_122761864_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Cacng3_chr7_122761864_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Lama5_chr2_180180406_F | TCGTCGGCAGCGTCTAGAGGCTGACCACCTCCTC | 60.0 | 0.07 |
| mm4_exon_Lama5_chr2_180180406_R | GTCTCGTGGGCTCGGGTGTGGTTGGTCTCTGGGAG | 59.9 | 0.07 |
| mm4_exon_Axl_chr7_25788583_F | TCGTCGGCAGCGTCTCTTCCGAAGTTGATGGGCA | 59.3 | 0.07 |
| mm4_exon_Axl_chr7_25788583_R | GTCTCGTGGGCTCGGGAGTTGAGCCAGCCGAGG | 60.1 | 0.07 |
| mm4_intron_Dscam_chr16_96680724_F | TCGTCGGCAGCGTCCGTCATATGACAGGCAGGGA | 59.2 | 0.07 |
| mm4_intron_Dscam_chr16_96680724_R | GTCTCGTGGGCTCGGTCCAGGACCCTGTATCCACA | 59.5 | 0.07 |
| mm3_exon_Mxd4_chr5_34174688_F | TCGTCGGCAGCGTCTAGATCACCCCTCACAGGCC | 60.6 | 0.07 |
| mm3_exon_Mxd4_chr5_34174688_R | GTCTCGTGGGCTCGGTGGCTGAATTTTGTGGCAGC | 59.9 | 0.07 |
| mm3_intergenic_Tenm2|Gm12128_chr11_37249068_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_Tenm2|Gm12128_chr11_37249068_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Cln8|Arhgef10_chr8_14907495_F | TCGTCGGCAGCGTCTACACGGGTCCTGTAGTCGT | 59.9 | 0.07 |
| mm4_intergenic_Cln8|Arhgef10_chr8_14907495_R | GTCTCGTGGGCTCGGCCCTTGTGATTTCTGGGCCT | 59.9 | 0.07 |
| mm4_intron_Dlk1_chr12_109453909_F | TCGTCGGCAGCGTCCCTAACCCTAAGCCCTGCAC | 60.1 | 0.07 |
| mm4_intron_Dlk1_chr12_109453909_R | GTCTCGTGGGCTCGGCACTTCTGCCGGGCTAGAAG | 60.4 | 0.07 |
| mm4_intron_Crtc1_chr8_70413955_F | TCGTCGGCAGCGTCCCTGGAGGCTCCTTTCTGTC | 59.7 | 0.07 |
| mm4_intron_Crtc1_chr8_70413955_R | GTCTCGTGGGCTCGGCATGGACTGAGGCCAAGACA | 59.6 | 0.07 |
| mm4_intergenic_Gm25602|Tbc1d32_chr10_55867582_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm25602|Tbc1d32_chr10_55867582_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Ptprc_chr1_138141952_F | TCGTCGGCAGCGTCACTACCCTCAGGAAGGCACT | 59.8 | 0.07 |
| mm4_intron_Ptprc_chr1_138141952_R | GTCTCGTGGGCTCGGTGTCAGTAGGTGGGGAAGGT | 59.8 | 0.07 |
| mm4_intron_Dtnb_chr12_3746988_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Dtnb_chr12_3746988_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Clec16a_chr16_10707231_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Clec16a_chr16_10707231_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_4930467D21Rik_chr5_97392908_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_4930467D21Rik_chr5_97392908_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Ccdc112_chr18_46307708_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Ccdc112_chr18_46307708_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Slc25a21_chr12_57145772_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Slc25a21_chr12_57145772_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm25514|Gm13981_chr2_117042362_F | TCGTCGGCAGCGTCGCTCCAGGAGATTCCCATGT | 59.1 | 0.06 |
| mm4_intergenic_Gm25514|Gm13981_chr2_117042362_R | GTCTCGTGGGCTCGGATGAAGGTGTGCAGACCTGG | 59.9 | 0.06 |
| mm4_intergenic_Gjb6|Cryl1_chr14_57146126_F | TCGTCGGCAGCGTCTGCTTGATGCTGTTCCTTGTG | 59.3 | 0.06 |
| mm4_intergenic_Gjb6|Cryl1_chr14_57146126_R | GTCTCGTGGGCTCGGCTAACCACCAGGCTGCTCAC | 60.6 | 0.06 |
| mm4_intron_Ptpru_chr4_131802892_F | TCGTCGGCAGCGTCCACTAGGCTGCTCTACCCCT | 60.3 | 0.06 |
| mm4_intron_Ptpru_chr4_131802892_R | GTCTCGTGGGCTCGGCTCAGGTGAGCTTCCTTGGG | 60.0 | 0.06 |
| mm4_exon_Psmf1_chr2_151717430_F | TCGTCGGCAGCGTCGCACAGAATGGCCTACACCT | 60.0 | 0.06 |
| mm4_exon_Psmf1_chr2_151717430_R | GTCTCGTGGGCTCGGAGACTGGACTGACAGGACCA | 59.8 | 0.06 |
| mm4_intergenic_Slitrk4|Gm24598_chrX_64481793_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slitrk4|Gm24598_chrX_64481793_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Dlg2_chr7_91947249_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Dlg2_chr7_91947249_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Cdh23_chr10_60691445_F | TCGTCGGCAGCGTCACACAGCTGTCTCTGGAGGA | 60.1 | 0.06 |
| mm4_intron_Cdh23_chr10_60691445_R | GTCTCGTGGGCTCGGTGTGCCTGTTTACTGAGGCT | 59.2 | 0.06 |
| mm4_intergenic_Gm15323|Ankrd55_chr13_112058929_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm15323|Ankrd55_chr13_112058929_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Recql5|Smim5_chr11_115899147_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Recql5|Smim5_chr11_115899147_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_2210404O09Rik|Zfp942_chr17_21909303_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_2210404O09Rik|Zfp942_chr17_21909303_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Il1rapl1|Gm8855_chrX_87642711_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Il1rapl1|Gm8855_chrX_87642711_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Nkain3_chr4_20480903_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Nkain3_chr4_20480903_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Wdr93_chr7_79772035_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Wdr93_chr7_79772035_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Camk2g_chr14_20768722_F | TCGTCGGCAGCGTCGTGTGAAGTGTCCCAGCAGA | 59.8 | 0.05 |
| mm4_intron_Camk2g_chr14_20768722_R | GTCTCGTGGGCTCGGTGAATTCCAGTGCCAGCAGG | 60.6 | 0.05 |
| mm4_intergenic_8430408G22Rik|Rassf4_chr6_116658770_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_8430408G22Rik|Rassf4_chr6_116658770_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Ttc6|Sstr1_chr12_57794440_F | TCGTCGGCAGCGTCGCAAATAGGCGCACCATGAG | 59.9 | 0.05 |
| mm4_intergenic_Ttc6|Sstr1_chr12_57794440_R | GTCTCGTGGGCTCGGTCCCTGGTCAACTTGAAGCA | 59.1 | 0.05 |
| mm4_intron_Ncald_chr15_37393766_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Ncald_chr15_37393766_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Pard3b_chr1_62600999_F | TCGTCGGCAGCGTCGGACCTGCACCTCTGAGATG | 59.8 | 0.05 |
| mm4_intron_Pard3b_chr1_62600999_R | GTCTCGTGGGCTCGGTCCTTCATTCATGGGCGTGT | 59.6 | 0.05 |
| mm4_intergenic_Ptger4|AC133283.1_chr15_5292289_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Ptger4|AC133283.1_chr15_5292289_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gm4221_chr18_55040054_F | TCGTCGGCAGCGTCGAGGAGGTTACAAGACAACCCT | 59.3 | 0.05 |
| mm4_intron_Gm4221_chr18_55040054_R | GTCTCGTGGGCTCGGTCAGATGCATAAATTGTGCCGT | 58.9 | 0.05 |
| mm4_intron_Slit2_chr5_47985536_F | TCGTCGGCAGCGTCTTCCTGTACCCCTCTCGTCC | 60.3 | 0.05 |
| mm4_intron_Slit2_chr5_47985536_R | GTCTCGTGGGCTCGGCTTTGCAGTCTGGGAAACGC | 60.0 | 0.05 |
| mm4_intron_Gnl2_chr4_125050396_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gnl2_chr4_125050396_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Eqtn_chr4_94920749_F | TCGTCGGCAGCGTCTCCTTCTCACAGTTCTCCCA | 57.6 | 0.05 |
| mm4_intron_Eqtn_chr4_94920749_R | GTCTCGTGGGCTCGGAGTCAGAGAGCATTGACATGAGA | 59.2 | 0.05 |
| mm4_intron_2010111I01Rik_chr13_63064191_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_2010111I01Rik_chr13_63064191_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_4930412B13Rik|Gm13986_chr2_118022053_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_4930412B13Rik|Gm13986_chr2_118022053_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Lrrc52|Rxrg_chr1_167496410_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Lrrc52|Rxrg_chr1_167496410_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Adrbk2_chr5_112938424_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Adrbk2_chr5_112938424_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gm10044_chr14_7768677_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gm10044_chr14_7768677_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Aff3_chr1_38438431_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Aff3_chr1_38438431_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Psmd11_chr11_80448822_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Psmd11_chr11_80448822_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Foxo1|Gm10293_chr3_52526610_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Foxo1|Gm10293_chr3_52526610_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intron_Fam19a5_chr15_87728718_F | TCGTCGGCAGCGTCTTCCTGAGCTCTGACCCTGA | 59.8 | 0.04 |
| mm3_intron_Fam19a5_chr15_87728718_R | GTCTCGTGGGCTCGGCGCAGAACTGGCTAAGGACA | 60.0 | 0.04 |
| mm4_intron_Maml3_chr3_51756844_F | TCGTCGGCAGCGTCAGACCAAGAACAAGTACCTGGA | 58.6 | 0.04 |
| mm4_intron_Maml3_chr3_51756844_R | GTCTCGTGGGCTCGGTCCTGAGAAATACCCCGGGT | 59.9 | 0.04 |
| mm4_intron_Rnf165_chr18_77503268_F | TCGTCGGCAGCGTCAGCTGTCATCAGACTGTGCC | 60.0 | 0.04 |
| mm4_intron_Rnf165_chr18_77503268_R | GTCTCGTGGGCTCGGGGACCCCATTTCCACTCTGG | 60.0 | 0.04 |
| mm4_intergenic_Jph2|Oser1_chr2_163402013_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Jph2|Oser1_chr2_163402013_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Capn13|Galnt14_chr17_73475041_F | TCGTCGGCAGCGTCTGGAAGAGCTAGCTGTTGGT | 58.6 | 0.04 |
| mm4_intergenic_Capn13|Galnt14_chr17_73475041_R | GTCTCGTGGGCTCGGGAGCCAGGGTTCCTAAAGCA | 59.6 | 0.04 |
| mm4_intron_Snx8_chr5_140375932_F | TCGTCGGCAGCGTCCTGAGACACAGCTCAGGGTT | 59.3 | 0.04 |
| mm4_intron_Snx8_chr5_140375932_R | GTCTCGTGGGCTCGGAGAAGGAGTCCTCTGGCCTC | 60.3 | 0.04 |
| mm4_intergenic_Gm26977|Pard6g_chr18_79964557_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm26977|Pard6g_chr18_79964557_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Epha2_chr4_141322761_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Epha2_chr4_141322761_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Pla2g7|1700071M16Rik/Pla2g7_chr17_43587848_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Pla2g7|1700071M16Rik/Pla2g7_chr17_43587848_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm25634|Hs6st1_chr1_35855964_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm25634|Hs6st1_chr1_35855964_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Bahcc1_chr11_120253267_F | TCGTCGGCAGCGTCGCCAGACACAGAACCGAGAA | 59.9 | 0.04 |
| mm4_intron_Bahcc1_chr11_120253267_R | GTCTCGTGGGCTCGGGCAGCAGCTCCAGAGAAACA | 60.6 | 0.04 |
| mm4_intron_Hs6st3_chr14_119277393_F | TCGTCGGCAGCGTCGGCTTCTGGGCTGTGTAACT | 59.9 | 0.04 |
| mm4_intron_Hs6st3_chr14_119277393_R | GTCTCGTGGGCTCGGGGAAAGCTTAGGGGTGGTACA | 59.3 | 0.04 |
| mm4_intergenic_Snx16|Gm22795_chr3_10756550_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Snx16|Gm22795_chr3_10756550_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Sema4a|Sema4a/mmu-mir-7011_chr3_88439853_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Sema4a|Sema4a/mmu-mir-7011_chr3_88439853_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm5607|Sox1/Gm25239_chr8_12394379_F | TCGTCGGCAGCGTCAGAAGCCTTTACAATAACTCCCC | 58.1 | 0.03 |
| mm4_intergenic_Gm5607|Sox1/Gm25239_chr8_12394379_R | GTCTCGTGGGCTCGGTGGCCGTAATCCATGAATCTCA | 59.5 | 0.03 |
| mm4_intergenic_Smad7|Ctif_chr18_75396149_F | TCGTCGGCAGCGTCCTGTGGCTGACTTCAGGAGG | 60.0 | 0.03 |
| mm4_intergenic_Smad7|Ctif_chr18_75396149_R | GTCTCGTGGGCTCGGTCTGTCCCTGACCCAATCCT | 59.8 | 0.03 |
| mm3_intergenic_Gm13313|Gm13367_chr2_15228352_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Gm13313|Gm13367_chr2_15228352_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Gm26373|Kcnd2_chr6_21215324_F | TCGTCGGCAGCGTCTGGGAAGGTGACAAGGAGGA | 60.1 | 0.03 |
| mm3_intergenic_Gm26373|Kcnd2_chr6_21215324_R | GTCTCGTGGGCTCGGCCGGAAAGGGAAAGGCAGAG | 60.6 | 0.03 |
| mm4_intergenic_Trav20|Trav21-dv12_chr14_53866702_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Trav20|Trav21-dv12_chr14_53866702_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24935|Gm21232_chr13_87529499_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24935|Gm21232_chr13_87529499_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Serp2|Lacc1_chr14_76699378_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Serp2|Lacc1_chr14_76699378_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Mctp1_chr13_76754938_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Mctp1_chr13_76754938_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Arf3_chr15_98753817_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Arf3_chr15_98753817_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tmem200c|Epb4.1l3_chr17_69006941_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tmem200c|Epb4.1l3_chr17_69006941_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tdrd3|Rps3a2_chr14_87699450_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tdrd3|Rps3a2_chr14_87699450_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Lingo2|Gm12369_chr4_35986221_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Lingo2|Gm12369_chr4_35986221_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24288|Gm17215_chr8_7237520_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24288|Gm17215_chr8_7237520_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Scube1|Mpped1_chr15_83763552_F | TCGTCGGCAGCGTCATTCAGCTCCTGGCCTGTTC | 60.0 | 0.03 |
| mm3_intergenic_Scube1|Mpped1_chr15_83763552_R | GTCTCGTGGGCTCGGATGGCAGGCAGAACTAGACG | 59.8 | 0.03 |
| mm3_intron_Lama2_chr10_27275424_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intron_Lama2_chr10_27275424_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm23665|Csmd3_chr15_47336402_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm23665|Csmd3_chr15_47336402_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm16391|Gm17538_chr17_77539730_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm16391|Gm17538_chr17_77539730_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm18359|Vmn2r-ps70_chr7_85499283_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm18359|Vmn2r-ps70_chr7_85499283_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Enah|Srp9_chr1_182109319_F | TCGTCGGCAGCGTCCTGTGTCGGGTACAAAGGAGA | 59.3 | 0.02 |
| mm4_intergenic_Enah|Srp9_chr1_182109319_R | GTCTCGTGGGCTCGGATGACCCTGCTTTGCTCCTC | 60.0 | 0.02 |
| mm4_intron_Colq_chr14_31569948_F | TCGTCGGCAGCGTCGGGAGCAGAGTGTTGGAAGT | 59.6 | 0.02 |
| mm4_intron_Colq_chr14_31569948_R | GTCTCGTGGGCTCGGCCACATGGGTCACTGGGTTT | 60.1 | 0.02 |
| mm3_intron_2310067B10Rik_chr11_115783453_F | TCGTCGGCAGCGTCAGAGCTTCGGCCTCTGAATG | 59.8 | 0.02 |
| mm3_intron_2310067B10Rik_chr11_115783453_R | GTCTCGTGGGCTCGGATCTGGGTCAGAGGAAGCCT | 59.9 | 0.02 |
| mm4_exon_Myh10_chr11_68692534_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Myh10_chr11_68692534_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm5839|Gm25440_chr18_48848655_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm5839|Gm25440_chr18_48848655_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Plagl1_chr10_13109853_F | TCGTCGGCAGCGTCCCAAGGGGCTTGCACTCTAA | 59.9 | 0.02 |
| mm4_intron_Plagl1_chr10_13109853_R | GTCTCGTGGGCTCGGGGATCAGATCCCATGCCTCC | 59.6 | 0.02 |
| mm4_intron_Fgfr3_chr5_33726351_F | TCGTCGGCAGCGTCCTTAGCAGGACCACCCACTC | 59.7 | 0.02 |
| mm4_intron_Fgfr3_chr5_33726351_R | GTCTCGTGGGCTCGGTACCACCAGCTGGGCTATCT | 60.0 | 0.02 |
| mm4_intron_Unc5b_chr10_60803229_F | TCGTCGGCAGCGTCTTTACCCTTGGGCTGAAGGC | 60.2 | 0.02 |
| mm4_intron_Unc5b_chr10_60803229_R | GTCTCGTGGGCTCGGAGTGGTTCCTGGAGTCCCAT | 60.1 | 0.02 |
| mm4_intergenic_Pemt|SMCR2_1_chr11_60060267_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Pemt|SMCR2_1_chr11_60060267_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Pemt|SMCR2_1_chr11_60060137_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Pemt|SMCR2_1_chr11_60060137_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Pla2g16_chr19_7569083_F | TCGTCGGCAGCGTCTGCCCAATCTGGTCTTGGTG | 60.2 | 0.02 |
| mm4_intron_Pla2g16_chr19_7569083_R | GTCTCGTGGGCTCGGCCGCCAATTTTCCTGTGAGC | 60.1 | 0.02 |
| mm3_intergenic_1700028N14Rik/Map3k14|Arhgap27_chr11_103276100_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_1700028N14Rik/Map3k14|Arhgap27_chr11_103276100_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm23252|Olfr796_chr10_129599453_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm23252|Olfr796_chr10_129599453_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm7052|Zfp943_chr17_22050733_F | TCGTCGGCAGCGTCCCAGCCTGGGAGAACACAAT | 59.9 | 0.02 |
| mm4_intergenic_Gm7052|Zfp943_chr17_22050733_R | GTCTCGTGGGCTCGGAACCATCCCAGCATGCATCA | 60.0 | 0.02 |
| mm4_intron_Cpne4_chr9_104985346_F | TCGTCGGCAGCGTCAACCAGGCAGAGTCAAAGCA | 59.8 | 0.02 |
| mm4_intron_Cpne4_chr9_104985346_R | GTCTCGTGGGCTCGGTCCCTTGGCTGACAAATGCT | 59.8 | 0.02 |
| mm4_intergenic_Gm24856|Car10_chr11_93483490_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm24856|Car10_chr11_93483490_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Rasa3_chr8_13595225_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Rasa3_chr8_13595225_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Prr12_chr7_45036675_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Prr12_chr7_45036675_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Nin|Abhd12b_chr12_70129920_F | TCGTCGGCAGCGTCCCTTTGGGGTTTCCTCTCCC | 59.9 | 0.01 |
| mm4_intergenic_Nin|Abhd12b_chr12_70129920_R | GTCTCGTGGGCTCGGTTGCTGCTTGACCTGATCGT | 59.9 | 0.01 |
| mm4_intergenic_Wdr43|Fam179a_chr17_71666667_F | TCGTCGGCAGCGTCTGCCATCCTCACTCACTGTC | 59.3 | 0.01 |
| mm4_intergenic_Wdr43|Fam179a_chr17_71666667_R | GTCTCGTGGGCTCGGGGGTTCCTTTCTGAGCTGCT | 59.9 | 0.01 |
| mm4_intergenic_Cx3cl1|Ccl17_chr8_94793063_F | TCGTCGGCAGCGTCTTCCTTCCCAGGCTAGGTCA | 59.8 | 0.01 |
| mm4_intergenic_Cx3cl1|Ccl17_chr8_94793063_R | GTCTCGTGGGCTCGGTAGCTCAGGCCCACTAGGTT | 59.9 | 0.01 |
| mm4_intergenic_Stox2|4930448N21Rik/Gm10083_chr8_47408728_F | TCGTCGGCAGCGTCGTCTCTGCAGACGTCAGAGA | 58.8 | 0.01 |
| mm4_intergenic_Stox2|4930448N21Rik/Gm10083_chr8_47408728_R | GTCTCGTGGGCTCGGTGCTCACCGGTTCCTCTAAC | 59.3 | 0.01 |
| mm4_intergenic_Hs3st5|Gm22554_chr10_36734259_F | TCGTCGGCAGCGTCACACTAATGAAGGAATTCCAAGTGG | 59.2 | 0.01 |
| mm4_intergenic_Hs3st5|Gm22554_chr10_36734259_R | GTCTCGTGGGCTCGGTCAGGCAAGCCTTTGTTGAT | 58.0 | 0.01 |
| mm4_intergenic_Mpp7|Gm24292_chr18_7682581_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Mpp7|Gm24292_chr18_7682581_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm11366|Mboat1_chr13_30185220_F | TCGTCGGCAGCGTCTCTAGGTAGCTGGCTCCAGG | 60.1 | 0.01 |
| mm3_intergenic_Gm11366|Mboat1_chr13_30185220_R | GTCTCGTGGGCTCGGCCAGAAGACAGAGAGCAGGC | 60.1 | 0.01 |
| mm4_exon_Myo5a_chr9_75217951_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Myo5a_chr9_75217951_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Abca17_chr17_24327761_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Abca17_chr17_24327761_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm7485|Gm14926_chrX_119016887_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm7485|Gm14926_chrX_119016887_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Gabbr2_chr4_46934462_F | TCGTCGGCAGCGTCCACTGGGTTTTAGGGAGGCC | 60.3 | 0.01 |
| mm4_intron_Gabbr2_chr4_46934462_R | GTCTCGTGGGCTCGGCTCCAAAGCCAAGCTGGTTG | 59.6 | 0.01 |
| mm4_intron_Sorcs2_chr5_36091075_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Sorcs2_chr5_36091075_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_4930428N03Rik|Gm10398_chr14_24842797_F | TCGTCGGCAGCGTCAGGTCAGCTGGGTACTCTGA | 59.5 | 0.01 |
| mm4_intergenic_4930428N03Rik|Gm10398_chr14_24842797_R | GTCTCGTGGGCTCGGGGGACTCTTGGTCTTCCACA | 58.9 | 0.01 |
| mm2_intron_Gm9530_chr1_155070835_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intron_Gm9530_chr1_155070835_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Eif4g2|Galnt18_chr7_111307938_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Eif4g2|Galnt18_chr7_111307938_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Map3k9_chr12_81721951_F | TCGTCGGCAGCGTCCAGTGCAAGGAGGAGGTCTG | 60.0 | 0.01 |
| mm4_exon_Map3k9_chr12_81721951_R | GTCTCGTGGGCTCGGAAGGGAGAAGACGGAGGAGG | 60.3 | 0.01 |
| mm4_exon_Mgat5b_chr11_116986694_F | TCGTCGGCAGCGTCAGGAACACTGCCATTGCTCA | 59.8 | 0.01 |
| mm4_exon_Mgat5b_chr11_116986694_R | GTCTCGTGGGCTCGGCTGGATTCTGCTGCCACAGA | 60.0 | 0.01 |
| mm4_intergenic_Dapk2|Herc1_chr9_66275239_F | TCGTCGGCAGCGTCCTCCCAGCATATGTTGAAAGCA | 58.9 | 0.01 |
| mm4_intergenic_Dapk2|Herc1_chr9_66275239_R | GTCTCGTGGGCTCGGTCCGCATGTACTCGCTTTGA | 59.7 | 0.01 |
| mm4_intergenic_Gm25297|Dlk1_chr12_109360770_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm25297|Dlk1_chr12_109360770_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Fhdc1_chr3_84448707_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Fhdc1_chr3_84448707_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ctbp2|Tex36_chr7_133372382_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ctbp2|Tex36_chr7_133372382_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc9_chr15_72999925_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc9_chr15_72999925_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm22713|Prss12_chr3_123411721_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm22713|Prss12_chr3_123411721_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Arl4c_chr1_88682807_F | TCGTCGGCAGCGTCGGCTATGAGACAGACCTGGC | 59.8 | 0.00 |
| mm4_intron_Arl4c_chr1_88682807_R | GTCTCGTGGGCTCGGTCTCCTGGAGGTGCTGATGA | 59.9 | 0.00 |
| mm4_intergenic_Asap1|Adcy8_chr15_64427828_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Asap1|Adcy8_chr15_64427828_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_AC161214.1|Gm11033_chr8_74568721_F | TCGTCGGCAGCGTCCTGGATCAGCCTTCATCCCC | 59.8 | 0.00 |
| mm4_intergenic_AC161214.1|Gm11033_chr8_74568721_R | GTCTCGTGGGCTCGGAGGAATGGGGTTGGGTTACT | 58.2 | 0.00 |
| mm4_intergenic_Gm9049|Ifng_chr10_118357743_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm9049|Ifng_chr10_118357743_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Isl1|Gm23198_chr13_116606645_F | TCGTCGGCAGCGTCCCTCACAGCTCTCAGGGTTG | 60.0 | 0.00 |
| mm4_intergenic_Isl1|Gm23198_chr13_116606645_R | GTCTCGTGGGCTCGGTGAAACAGTGCATTGATGGAAGT | 59.1 | 0.00 |
| mm4_intergenic_Vmn2r99|Vmn2r-ps121_chr17_19431114_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Vmn2r99|Vmn2r-ps121_chr17_19431114_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rftn1_chr17_50082318_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rftn1_chr17_50082318_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tnfsf11_chr14_78296897_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tnfsf11_chr14_78296897_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Enpp6|Stox2_chr8_47169805_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Enpp6|Stox2_chr8_47169805_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Osbp2_chr11_3827897_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Osbp2_chr11_3827897_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Armc9_chr1_86248412_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Armc9_chr1_86248412_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Agbl1|Gm23239_chr7_76871503_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Agbl1|Gm23239_chr7_76871503_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Stard9_chr2_120690685_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Stard9_chr2_120690685_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sntg2_chr12_30311395_F | TCGTCGGCAGCGTCCATCCAGATCGCCCACAGAG | 60.2 | 0.00 |
| mm4_intron_Sntg2_chr12_30311395_R | GTCTCGTGGGCTCGGCCCCATGCTTTACAGGACTCA | 59.7 | 0.00 |
| mm4_intron_Smoc2_chr17_14339028_F | TCGTCGGCAGCGTCGATAGCAGGTGAGAGTGGCC | 59.8 | 0.00 |
| mm4_intron_Smoc2_chr17_14339028_R | GTCTCGTGGGCTCGGAACATCGCCTGGTTGCTGAT | 60.3 | 0.00 |
| mm4_intron_Fam73b_chr2_30364722_F | TCGTCGGCAGCGTCTGTTGATGTTCACTGTGGGGT | 59.7 | 0.00 |
| mm4_intron_Fam73b_chr2_30364722_R | GTCTCGTGGGCTCGGATGTCCTGTTTGTCCCACCC | 59.8 | 0.00 |
| mm4_intron_Dzank1_chr2_144506768_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dzank1_chr2_144506768_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dcc_chr18_72240059_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Dcc_chr18_72240059_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Acot7_chr4_152261186_F | TCGTCGGCAGCGTCCAGGCTGTCCCATCGCTG | 60.5 | 0.00 |
| mm4_intron_Acot7_chr4_152261186_R | GTCTCGTGGGCTCGGACACAACCCAAGGAACCTGG | 60.1 | 0.00 |
| mm4_intergenic_Rbm38/Gm14453|Ctcfl_chr2_173044848_F | TCGTCGGCAGCGTCATTGAACATGCCAGCCTCCA | 59.9 | 0.00 |
| mm4_intergenic_Rbm38/Gm14453|Ctcfl_chr2_173044848_R | GTCTCGTGGGCTCGGCCTGGAGAGGAGTGAGCTCT | 60.0 | 0.00 |
| mm4_intergenic_Gm24246|Pik3c3_chr18_29057529_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24246|Pik3c3_chr18_29057529_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24050|Rnft2_chr5_118217473_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24050|Rnft2_chr5_118217473_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_4631405K08Rik|Plxna2_chr1_193587781_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_4631405K08Rik|Plxna2_chr1_193587781_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gm27011/Banp_chr8_121950502_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gm27011/Banp_chr8_121950502_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Gm23432|Ptbp2_chr3_119685226_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Gm23432|Ptbp2_chr3_119685226_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_exon_Ipo13_chr4_117894985_F | TCGTCGGCAGCGTCAGCCTGTCTCCTCTGTAGCA | 59.9 | 0.00 |
| mm3_exon_Ipo13_chr4_117894985_R | GTCTCGTGGGCTCGGTGCTGTGAGGATCTGCAGTC | 59.7 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313774 |
CCTTGTCGCCTTAGCTCCTCTTCTCAGCCAAGATCCCAGGGAGCCTGGGATTAGGAGCTTACTTGGGGGTTTTCCCCCTC CCCCCCTCTGGAGAGTCCGGGGATGGAGAGCCGAAAGGAC |
| mm3_exon_H2-T3_chr17_36186476 |
CCAGTGACCCAGTCCTTTCCAGTTTGCCTCAGCCCCAATCCCAGGCTCCCAGGTGTCACCTTTTCAAGTATCCAGAGACA AGAGAGAAGCTGTCCTTGCCTG |
| mm4_exon_Rnf11_chr4_109454162 |
CATCTGCAGCCATCCAGGAATTTTTAGGAAACTTTTGTGCATGATCTTAATTCCTAATCCCTGGCTCTTTGGGCTCAGTG ACAAAAGATCAAAACCACCAAAACTGATGGTTCACTTGAAGTCAGACGAGAGACCCTGG |
| mm4_intron_Glb1l3_chr9_26860041 | CCTGTGGCAAAGGACATCCATTAGAGGCGTTCTCCCAGAGAACCTGGGATAAGGGAGGCTGTAGCTCTACCCGGTTCCA |
| mm4_exon_9130213A22Rik/Hes7_chr11_69121380 |
AGTAGCAGGGAGTGAGAGGGAAACGAATGGACCAGACCCAAGCAGCCTGGGATTAGGGGAAAGGGGCGCATGGGGGGTTT TCCCAGCGGCAGGATC |
| mm4_intergenic_Atg4a-ps/Syt6|Gm25325_chr3_103646809 |
CCAAGAAACCCAACCCCACTCAGAGTTTGGAGCCTAATTCCAGCCTCTCTGGGAAGCCCAGAGGGGACCATTCCTCTGTC CAC |
| mm3_intergenic_Gm11204|Utp6_chr11_79924171 |
AAGGCTGGTTAACCTCTGGCTCCTCCACAGAGCCCAAATCCCAGGCTCCATGGAACCTGGAAGTACAGCTAAGGGCAGAA GAGCAACTCAATGGTCTCCCTTGGGACCAGGACCCCTGCAGAAGCATGAGACTCGGGAGG |
| mm4_intergenic_Gm5423|Mcm9_chr10_53509704 |
TGGGCCATTGGAGTGGTATGTTCAGAAAAGACAACTCTGCAGAGACAGCATGTACATCAGTGGGTGCCTGGGATTGGGAA GGGAATGGAGAGGAAGCATAGAGAAATGATCCCAAACCAGACTGCACTT |
| mm4_intergenic_Gm26069|Gm25811_chr4_85976536 |
TTGTCAGCAAGAGGAGCTCCCAAGGATTCTTGGGAACCTGGGATTGGGTCGTCTTATTTATTAACTTCTCCTAGGGTTGA TGTCCCACGTTGGTAAATAGTGCATTTTTCAGAACAGATCTGTCAGCGACCTCC |
| mm4_intergenic_Gm22434|Prrx1_chr1_163190937 |
TCTGCCAAGGCTGCAATCATTCTCTCATTTATAAATCTAAGTTTAAATTAAACCAAATCCCAGGCTTTCTTGGTTCCAAA TCTTCCCTTTTGGCAAAGCTTATTCTTGGTTCAAAGAAAAGAGAGGCTTTCTTCCCTCCC |
| mm4_intron_Rhoh_chr5_65875830 |
TTCCCCAGCAGCAGAATCTGTATCTTGTCCGCACAGTCAGCCAAATCCCAGGCAAGCTGGGACTACTGTGACCAGTGAGT GCTGTA |
| mm3_intron_Map4k3_chr17_80684301 |
TGCTTTCAGAGGGTCTGTCACTACTCTTTGACTTATTAATTCAAAAGGTCTGTCAAAAACTTGCTATAAGGTATCAGTTC CAAACCCCAGTCTCTCTGGGATGAATAATTAACTTCTGGTGCTCTCTTTCCAGTGG |
| mm4_intergenic_Csnk2a2|Ccdc113_chr8_95527285 |
TTGTTCTGCAGCAACGTGTGCTGAATAGTTTCTCTCCCCAAACTCAGGCTCCCTTGGAACTCCCAACATGACCCTTCATT AGGACAAGGGTTTTCACAGGTGTAACTAGAGCAGAGCCTGGGA |
| mm4_intergenic_Gja8|Gja5_chr3_96968804 |
GGGGCACAAATCATGGGGACAAAGGGCTGCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNCACCCCATTGAATATAATGAAAGAGTCACCACGGTTATGTTGGA |
| mm3_intron_Celf4_chr18_25752613 |
GGCTTACCTTTCAAAATGCACCTCTTGAATGCATAATATTATTTCCCAAATCCCAGCCTCACTGGGAAAGGAGATTGTTC AGATTTTCTAGACCCCTCACTCCACCCAGGGGACGGCTCTTTCCCTGCTAA |
| mm3_intergenic_Evx2|Hoxd13_chr2_74665450 | TCAGCAGTCTGGCTCAACAGCAGTGACTTCCCTGGGATCCTGGGATTTGGAGTTCTACCTGTGGGCCCTTTCAG |
| mm4_intergenic_Gm25905|Dcp1b_chr6_119074953 |
GAGCCGAGCAAGAGTCAAGTTCAGGCAAGCAATGGGGAGGTAGAGATGAGCCAAGGAGAGGGTTTAAGATAAAAGAAGCA AAGGCCAAATCTCAGGGTCCCTGGAGTCCAGCCTGAGAGTCCTCTCTGCTTTGTCCACGT |
| mm4_intron_Dgkg_chr16_22482606 |
CAAGCCATTGCGGATCACAGTAGAAAAGCAGGTAGGAAACCCAAATCCCAGGCTCCATGCTACAGGATCAATTGCCTACA GTGGTGGCCAGAGCTTTTGAT |
| mm4_intron_Myrip_chr9_120433040 |
AACCCGCAAGCACACAGATATTTTGAAAGTAGGATGACCCTTCTCTGCGCATAGTACCCAAGAGAGCCTGGGTTTGGGCT CTGCTGTCTAAGATTCTATTGGTCTTGCGGCCAAGCGCACCCTGAGTTGTCACTTGGGCT |
| mm4_intergenic_Igsf11|Gm24795_chr16_39151748 | GCTCTAGACTCAGGAGGTGCACAGGGAGGGAGAACTAAGGGAGCCAGGGATTGGGGCCTGGGAATGCACTATTTGT |
| mm4_intergenic_Maml3|Gm10728_chr3_51876195 | GCTGTTCCCTGGTCTTTCCAAATCCCCAATCCCAACCTCCCTGGTGTGTGCGGAGTCTGAGCTACTCT |
| mm4_intergenic_Prima1|Fam181a_chr12_103286941 |
CAAGCTGCCTCCACTGAGAAGATACATTTATAAGATTTCTGAGTTCAGCCTATCTCCTGCCAAGGTCTCCATCAAACCTC TCCGCCCATCTCCCAGGGAGACTAGGGTTGGGTTGTGGGTGGTAGGGGAGAGGAAGGT |
| mm4_intergenic_Dscaml1|Gm22069_chr9_45615325 |
GGCCTCCTTCTTCACACAGGACCAGGAGTAGAAAAAGGAGTCACAAACCAGGAAGAGCCCAGGGAATCTGGGTTTTGGAG ACAAGCCATAGGAACTGGAGTTAGAGAGAGTAGGAGCGCTAGCCATCTACTG |
| mm4_intergenic_Eepd1|Gm25346_chr9_25555267 |
GCCCTGCTTTGGTGTTTTCTATGTGTGACAAGTATATATTCGTTTTACCAGGAAGCCTGGGGTTAGGAAAATTAAACTTA ATACAGTAGTCACTCTTCCAGCCAGAACCTAGTGC |
| mm4_intergenic_Gm23816|Serpine3_chr14_62648232 |
TGGCTTTCCCATAGCCACATTAATGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCCT ATCCCAGTCTTCCTGGGCTTGTATACTTTAGTTCTTCCTGTGACCATGCCAC |
| mm4_intergenic_Smpd3|Gm10629_chr8_106272957 |
CCTAGGTCTTTGCCTGAGCCTCCACTCATCCCAAGGATCCTGAGATAAGGGGTAAGAACCTTCCTACACCAGACCCACTG CAGAAAGTTGACTGAAGCAGAAGCCATGGGACT |
| mm4_intron_Sulf2_chr2_166109059 |
GATGCCTGGATCTGAGAGCCACGAGGAGAGAGAGGCAGAGCCTGGGGAGCCTGGGATATGGAGAGCTGAGGAGGCTGGAA CAGAAGTCC |
| mm4_intron_Stk32c_chr7_139165067 |
ACCAGATCCACTCAGCTGTGAAATCCTATTGAGCCTAGGATTGGGTCATGGCCATGATGCTTTGAAATGGCCCAGGAGGA CACACCAGCAGTCTGCTGTCAGGAGCCAGTTATCATCAGCTTGCCTCAGCTTCTCT |
| mm3_exon_Gm16150_chr1_38245661 |
CACTGTGCATGCTGACACACCGGACCATCCTCTCTTTGCCGAATGCCAGGCTCCTTGGGAGTGGGAGCCACAAATGATGG ATCTTGGTATGTTGATCCTTGAATGGTGCCTTACCCAGTGTTCAGG |
| mm4_intergenic_Sox18|Tcea2_chr2_181678079 |
TGCCTGTCCTTTTCAGACCTTCAAGCTGGGATATCTCTATCCCAGGGTCCCTAGGATAGGGCTATGTTGCTCACTGAGGA CTCTTGAAGTCAGAGATCCACTTCAGGGGCAGAC |
| mm4_intron_Spock1_chr13_57657910 |
CAGGTTCTGGGCAGCTGTAAGAGGTGACATTCAGAGCACACAAGTCAGAAGATTCTAGTCCAAACCCCAGGCTCCCAGGA ACTACCTACAAATTTACTGTCACACGGTAGATGTTCAGGG |
| mm4_intron_2410004I01Rik_chr11_102963782 | GGTCCCCTCACTCTAGAGCAGCCCCTATCCCAGGCCCCCTAGGAGTCTCTAATTAAAGGGCCGGCACG |
| mm4_intron_Pdgfra_chr5_75156442 |
CGACCCTTGTCCCAGTAGCCCTGGGCGGTCGAGCGGTCCCCAGCCGGGAGCCCAGTGCGCCTGGAATTTGGGCTCACCTG GGTCGCTCTTGAGTTT |
| mm4_intergenic_Gm22529|Gpr37_chr6_25583906 |
AGTAACTGTAGCTGCCCTGCCCTTCAGTACATCACACGATTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGTATTTAGGGCGTGGA |
| mm3_exon_Gm15506_chr7_98693242 |
TACAGCACTGACGTGTGACCGCTTAACTGTGGCCGTTTCCTGGCCCAGGGAGCCTGGGCTTTGGGGAGCCTGGGAAAGAG ACAAGAAAGAGAGCTTTATATGAGGTAAGCCTCGACAGCAATAACGAAGGCC |
| mm4_intergenic_Spert|4930564B18Rik_chr14_75619143 |
CCTAGCTGTGCTAACACCCCAGCTCACCAAACCCCAGGCTCCCTTGAACTGCCCTGCAGCCTGCAGCAGTACCCTTTGCT CCTCTACTCTCGTCTGTGCCAGGGTGTCTCTTAGGGCCTT |
| mm4_exon_Gpn1/4930566F21Rik_chr5_31494794 |
GGAATTCAGAGAGCCCGCAGGCCGCCGGGCGATCCCTGAGTGGTGGGCGTGGCTGAGGAAAGATGGCGGCGCCCGTGGCT CCATCCGAACCCCAGGCTTCCCGGGCTCCTCAGCCCCCCGTGTGTCTGTTGGTGTTG |
| mm4_intron_a_chr2_154966030 |
AGAAAGCTCTGTGTCTTCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCTCTCCC TAGCTCTTCCGAATCCCTGACTGCCTGGGAGCTTCCTATCGGCAAGGACCGTGTCTCTC |
| mm4_intergenic_Ephb1|n-R5s88_chr9_102107859 | GGTAGTACCGGCTTTGATGCTGCTCCAGGGAGCCTGGGAGTGGGCAGGGCTCTCTTTGTGCTCAAAAGGGCCC |
| mm4_intron_Nfam1_chr15_83032530 |
GGTGCGCTGGCCTAGATAAATTGGCCTCTACCCCACAGCTTGCTTTGAATCCAGACCTCCCAGCTTCCAAGGGAGCCTGG AACTAGGATAGGACAGCAGTGTTGGCC |
| mm3_intron_Ttll12_chr15_83586644 |
ACAGCCAGATCTAACTGCACAGACCTCTTCTTCCCAAACCCAGACTACCTGGGATCTAGACCAAGACAGACAGCCACCCT GTGTGGCTACAGGAGCTGGTGCACGGTAAGCCTCCTCCATC |
| mm4_intergenic_Gm13865|Vav3_chr3_109234325 |
GTTGTGTTCAGACTTTGTCCCATACTCTAATTCGTTCATTATGCATTTGCAAATATTCCCAAATCCTAAATCCCAGGCAC TCTGGATTCAAGTGTTTGGGATATGGGCTACTCAACCCAGTCAACCGTT |
| mm4_intergenic_n-R5s196|Maml3_chr3_51854364 |
TAAAGGCACAGAGCTCAGGCCTGTCTGAGCAGGTCAGCACGGCCTCCTGGCCCAGTGGCTTCCAGGCAGCCTGGGGTTGG GGTAGGGAATGAGGGTGGGGTGAGAGT |
| mm4_intron_Cad_chr5_31077529 |
AGTGTACGGGACTTTGTGGCCTCCCGAGGCACCAAGCAGGTGAGATCCTGGTGACTTAGTCCACGCCAGAGAGCCCGGGA TTGGGCGGTGAGAGCCGTGCAGGGCATTCACCCAGCTCCCTCCTTA |
| mm2_intergenic_Ccr3|Ccr2_chr9_124051332 |
AGAGGGGAGTTCAGCTCGTAAATTGGAACCCAGGCAGCCTGGGATTAAGAGGGAAATTTCTTTCTCCTCATTCACTTCCT CTTTTTCCTCTCTCTTCCGTCCTCTCTCCTGCCTCTCCAT |
| mm4_intergenic_Barx1|Phf2_chr13_48742535 |
AGCTCTTCTGTCTTAAAGGCATATCTCAACTAAGAAAACCACAGGGGGCCTGGGAATGGGCGAGAATCATGTTTGTTCCA GAATGCACACAGCAGACAGGGAGGGCAAGAGAA |
| mm3_intergenic_Gm14661/Gm14651|Gm14661_chrX_60661157 |
TGCAGCCTAAGTGTAGTGCTTCCTCCCCACTCCCAGGCTACCTGGGAGGAACTGCGGGACCTCCGACAGCTGTTCATGGA CCATGCATCTCACACC |
| mm4_exon_Map3k12_chr15_102501491 | GCAAGCATCCCAAGCTGAAGGGCCCACTCCTAGGCCCCCTGGGCTTCCTAGTCCTCCAGGCTCATGGG |
| mm4_intron_Itsn1_chr16_91887529 |
TACGTGAACGACTTGCAGCTGGTCACAGAGGTACCAGCAGCCCTGGGAGGCTGGGGTTGGGCCTGCGGGGATGGCAAGAG GTGGAGGCCCTGCTGAGGGCGCCATGCCCTGTCTCTGAGCCTT |
| mm4_intergenic_Ell2|Glrx_chr13_75786308 |
GAATCGTGAGCCTGAGGGACAGGCATCAGAGGGAGCTCGGGATTGGGCTCCTGTTAACGTAGACTACTTGTTACCCGGAT ATGCTTTCATCTCCACATCTCCTACACCTTACGTCACCTTCTTGTCCGC |
| mm4_exon_Dagla_chr19_10246187 |
AAAGACTCAGGCCCAGATGCCAGGAATCATGAGTTGGTCAGGGAAACCTAGGCAGCCCAGAGAGGCTGGGAGTGGGGCTA GAGTGGAAGGGACCATGCTTCCAAGG |
| mm4_intron_Prkcb_chr7_122412183 |
ATGAGGGCAGGGTGTTGATGGGACCAGAAGGTGGATGTGTCAGTCCAACAGGGACTTGCTGAAAAGAAACCCAAATACCA GGCACCCATGGATATGGGGCACCTGTCAAACTGTGA |
| mm4_intergenic_Gm26321|Gm13597_chr2_68526400 | CTCAGTGTCGGCCTTCCATTTCCTTCCATTTCCCAGGCACACTGGGATTGCACATGCGCGTGTACTATG |
| mm3_intergenic_Gm10355|Igsf3_chr3_101376847 |
TGCTATTGTTTACCGGGCGAAAGACGCGTCCCCGGGAGCCTGGGCTTTGGGAGGGGCCCTTGGGGCGCGAACCCCAGGTT AACTTTCCATCAGCTCATCCCAGGTG |
| mm4_intergenic_Gm4889|Dusp4_chr8_34352838 |
GGGTGTCCCAAACTGAGATGTCACGTGTATCCCAGGTATCCTGAGGTTGGGCCCTGTGGACTTGCTGTAAAGTGGAACTC AGGCACCTGCACCACAGGAGAAGCTATTTTTGCCCCATCTCTGCTGAG |
| mm4_exon_Kif26a_chr12_112177083 |
CTGTTTGAGGACCCTTGGCTGCTCCGGGCAGAGGACTGTGACACGCGCCAGATAGCCTCTACGGGCAGAGCCCCAAGCCC AACCCCAGGCTCCCCTCGATTGCCTGAGACTCAGATGATGCTGGCTTGTGC |
| mm4_intron_A4galt_chr15_83228692 |
ACGTTTCCTACTGACGCCAGGGAAAGATAATATTCCAAAGCCCAGGGTCTCTGGGACACATGAGGCATGAGTTGTACCCT GGCAGGCTGGCTGCTCATCTGTGACA |
| mm4_exon_Lama5_chr2_180180406 |
TAGAGGCTGACCACCTCCTCATTCAGTGTTTCCATCTCAATGCAGCCCAGGTAGCCAGGGAATCGGAGGGGTTCAGGGGG CTGGGGGTAAAGTGTATGGTCAGGGCACCTTCCTACCTCCCAGAGACCAACCACAC |
| mm4_exon_Axl_chr7_25788583 |
TCTTCCGAAGTTGATGGGCACCTCGCTAGGAAAGGGGGCAGGGCCGGGTTGTCCCCGGCCCTCCCCCCACCCCTGGGCTC CTGGGATTTGGCACTGCCCGCCTGGCACAGCGGGAGCCCCTCGGCTGGCTCAACTC |
| mm4_intron_Dscam_chr16_96680724 |
CGTCATATGACAGGCAGGGAACTAAAGGACAGAAAAGCAATACATTGCCAGAATTCAAGGCCATGATCCCTGAGAGCCTG GGCTATGGAGGCAGGCTTCACATCCACCATACAAGATTGTGGATACAGGGTCCTGGA |
| mm3_exon_Mxd4_chr5_34174688 |
TAGATCACCCCTCACAGGCCTGCTAGCGGAAGGGGCAGCTGGCTAGCACCCCTGGGTGACTGAGGAGGCCAACTCCCAGG CTACATGGGATCCATAGCCTGAAAAGGCAAAGGGCTGAGCTGCCACAAAATTCAGCCA |
| mm4_intergenic_Cln8|Arhgef10_chr8_14907495 |
TACACGGGTCCTGTAGTCGTCTCTTTCATATTTTCCCTTTGGCCTCCCGTCTATCACAAGGAGCCTGGGTTGGGGCAGGG ATAGAAATAGATCTCTAGGCCCAGAAATCACAAGGG |
| mm4_intron_Dlk1_chr12_109453909 |
CCTAACCCTAAGCCCTGCACTGTGCCCGCCTCATCCGCCCTGCACCACTCTTGCTTGTTGAGCCCAATCCCGGGGTCCCA GGGTTTGTGGGAGGTGGAGGGTCCCAGCCCCTTCTAGCCCGGCAGAAGTG |
| mm4_intron_Crtc1_chr8_70413955 |
CCTGGAGGCTCCTTTCTGTCTTGTCTATCTACAAACCCAAGGCAGCCTGGGACTTGGGGTCATGGCTCTAGCATCTACAG TCCACACTGTACCTCCTATGTCTTGGCCTCAGTCCATG |
| mm4_intron_Ptprc_chr1_138141952 |
ACTACCCTCAGGAAGGCACTTCTGAATCCCAGGCCCCCTGGATGTCCTCAGAGCAATGCCAGGCCAGGTAGACTCTGGAA CTGTTTCCTGGAGGTCATCATGGAACCTTCCCCACCTACTGACA |
| mm4_intergenic_Gm25514|Gm13981_chr2_117042362 |
GCTCCAGGAGATTCCCATGTCAAGCTCAGAAATGGCTCTTCCAGCAAAGAGAAACTGTTGAGGTTGCTGTGACAGTGAGC CTGGGATTCAGAAGATGCTGGCCAGGTCTGCACACCTTCAT |
| mm4_intergenic_Gjb6|Cryl1_chr14_57146126 |
TGCTTGATGCTGTTCCTTGTGTGATAGTTTCCCAGGGAGCAAGGGAATGGGAGGACATGAAAGTAGAGACTCTGAACACC TATTGTTTATAAGGCTCAGCTTCAGCTCCTGGCAAGGGGGTGAGCAGCCTGGTGGTTAG |
| mm4_intron_Ptpru_chr4_131802892 | CACTAGGCTGCTCTACCCCTCCATATCCTAGGAGCCCTGGGATTCTGGGCCGCATCCCAAGGAAGCTCACCTGAG |
| mm4_exon_Psmf1_chr2_151717430 |
GCACAGAATGGCCTACACCTTCAAGGTGGTCAGTGCCTGACCCATGGGATCCTTCAACAGCTAGGGAGCCTGCTCATGCT GGATTGAGCCCCAAGCCCAGCCTCCCTGAGACTGGCCCTGGTCCTGTCAGTCCAGTCT |
| mm4_intron_Cdh23_chr10_60691445 |
ACACAGCTGTCTCTGGAGGAGAGGGACAAACTAGAGGAGGCAACTCCTGCTGGCTACCACAGTGGGCCTGGGATTTAGCC ATCTTTCCTGAGCCTCAGTAAACAGGCACA |
| mm4_intron_Camk2g_chr14_20768722 |
GTGTGAAGTGTCCCAGCAGAGCCAGGCCAAGCCCACTGGTACAGTCCTCCCACCCCCAAGCTCCCTGGGCTATCGCTGCC TCCTCCCACCCACAGCCTGGTCCTCCCCTGCTGGCACTGGAATTCA |
| mm4_intergenic_Ttc6|Sstr1_chr12_57794440 |
GCAAATAGGCGCACCATGAGGCTAAGCGTGAATATGTCTTTGGAAGGGATTTCCCCAACCCCATCCTCCCTGGGCTTTAG AGACAAAAGAACATTTGCTTCAAGTTGACCAGGGA |
| mm4_intron_Pard3b_chr1_62600999 |
GGACCTGCACCTCTGAGATGCTCCTGAAATTGCAGGGAGCCTGGAATGTGGAAGTTGGCTTTAAGGTACTTAATTCAGAC ACGCCCATGAATGAAGGA |
| mm4_intron_Gm4221_chr18_55040054 |
GAGGAGGTTACAAGACAACCCTAAAAATTGTCAGACTTACCCAATACCATGCTCTCTTGGATACAAAATGGGGCAATAAA AAGAACGGCACAATTTATGCATCTGA |
| mm4_intron_Slit2_chr5_47985536 |
TTCCTGTACCCCTCTCGTCCTTTGTAACTGCTTGTGCACTGTGGACCAGTTCTTTCTGGCTGAGGAGAGAGGCGCCTGGA ACTAGAATCCCAGGGTGCCTGGGGCAAGGGAGGTGTGCCCGCGTTTCCCAGACTGCAAAG |
| mm4_intron_Eqtn_chr4_94920749 |
TCCTTCTCACAGTTCTCCCATGCCCACTCCCAGGGTCCCAGGAATCTTCACGACTTTCTAGGTAATATTTAGGTAAGAAG TAAATATATATTCTCATGTCAATGCTCTCTGACT |
| mm3_intron_Fam19a5_chr15_87728718 |
TTCCTGAGCTCTGACCCTGAGCCAGGCTATCCCTTAGTCCCAGGCTCCCTGAGTTGGTCCTCATTGTTAGATATACATAT CTGACCCCCTGTCCTTAGCCAGTTCTGCG |
| mm4_intron_Maml3_chr3_51756844 |
AGACCAAGAACAAGTACCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT GCCAGGGATGCTGGGATATGGCTTCTCCATACCCGGGGTATTTCTCAGGA |
| mm4_intron_Rnf165_chr18_77503268 |
AGCTGTCATCAGACTGTGCCAGGGTCCAGTAGGCTTACTCACTTCGGTCTGACACTCATCATTTCCCACACTGAGCTTTG TCCCAGGGAACCTGGTCTTAGGAAGGCCCTCCAGAGTGGAAATGGGGTCC |
| mm4_intergenic_Capn13|Galnt14_chr17_73475041 |
TGGAAGAGCTAGCTGTTGGTATCTTCCCTTCTGAGAAGGAGACTTCAGGTTCCTATTTGCCTAACTAGACACCATATATT ATCCATCTCCCAGGCTGACTGGGATCTTGCCCCTATTTGCTTTAGGAACCCTGGCTC |
| mm4_intron_Snx8_chr5_140375932 |
CTGAGACACAGCTCAGGGTTAAGACTATCCCAGAGAACCTGGGTTCGGGTCACATGCGCATGGAGGCCAGAGGACTCCTT CT |
| mm4_intron_Bahcc1_chr11_120253267 |
GCCAGACACAGAACCGAGAAGGCCCATGCCAGCAGCCAGTCAGCTGGGCTTCCGGAAGCAACAGGAGCCCAGAGAGCCTG GGAAGGGGCTTGTTTCTCTGGAGCTGCTGC |
| mm4_intron_Hs6st3_chr14_119277393 |
GGCTTCTGGGCTGTGTAACTGCTATTTTCCCCTGTGTTAGTGATGGTCCCAGGGTGCCTGGTCTTAGGACATTGTACCAC CCCTAAGCTTTCC |
| mm4_intergenic_Gm5607|Sox1/Gm25239_chr8_12394379 |
AGAAGCCTTTACAATAACTCCCCCCCCCTTTTTTTTTTTGGACATGATGGTCTGATCCCAAGTAGCCTGGGGTGGGGTTG GAAATCTCTTATACATCCCGGAATCATATTTGTTCTGAGATTCATGGATTACGGCCA |
| mm4_intergenic_Smad7|Ctif_chr18_75396149 | CTGTGGCTGACTTCAGGAGGAAAAGTATCCCTGGGAGACTGGGGTGGGGGGAGGATTGGGTCAGGGACAGA |
| mm3_intergenic_Gm26373|Kcnd2_chr6_21215324 |
TGGGAAGGTGACAAGGAGGAGGGAGGCACGGAGGGTGGGGGAAGGGGACGGAGAGCTCGCCAGAGCTTTATTTATGCTCC CCGGGAGCCTGGGATCTGGCTGCTCGGGAGCCGCTGGCTCTGCCTTTCCCTTTCCGG |
| mm3_intergenic_Scube1|Mpped1_chr15_83763552 |
ATTCAGCTCCTGGCCTGTTCCTGGCTATGTGTGCCTCTTGTCGTGGCAGCTTTATCCCAGTTAGCCTGGGATCTGGTCTC CTGGCTGGACAGAGGTCACACGCGTCTAGTTCTGCCTGCCAT |
| mm4_intergenic_Enah|Srp9_chr1_182109319 |
CTGTGTCGGGTACAAAGGAGATGTAAACACTCATTTTCTCCCCTTTCTCCCAGGGAGGCTGGGGTGGGGAAACTCCACCA TCTCTACAGAGGAGCAAAGCAGGGTCAT |
| mm4_intron_Colq_chr14_31569948 |
GGGAGCAGAGTGTTGGAAGTGTTACTCCTGATGTCACAGGAGAAGAGAAAGCTTGGTCCCCAAGACTTGGCTTGTAACTA TCCCAGATCCCTGTCTTCCTGGGATGCCCAGTAGTATTGAAACCCAGTGACCCATGTGG |
| mm3_intron_2310067B10Rik_chr11_115783453 |
AGAGCTTCGGCCTCTGAATGCTGTGCATCCCAGGAACCCTGGGATCAGGCTCTAGAGGGGAAGCTGGGGAGACTGAGTCC AAGAGAGTGGGGAGGGAAGGTAAGAAGGTGCTAGGAGCACAGGCTTCCTCTGACCCAGAT |
| mm4_intron_Plagl1_chr10_13109853 |
CCAAGGGGCTTGCACTCTAACTAGGTAGATCATTGTCACTGTTTCCCAGCCCAGGAAGCCTGGGAGGAGGGGGGCTAGGC AGAATGCAGGAGGCATGGGATCTGATCC |
| mm4_intron_Fgfr3_chr5_33726351 |
CTTAGCAGGACCACCCACTCCTGTCCTGGGCCCCAAGCCCAGCCGCCCTGTGATGGGCATTGTCAGGTTCTGGCAGGGAG GCCTGGAGGAGATAGCCCAGCTGGTGGTA |
| mm4_intron_Unc5b_chr10_60803229 |
TTTACCCTTGGGCTGAAGGCACGGGCTGCTTGAATCCAGGGAGGCTGGGATCAGGGGACAGGAACTAGGATGGGACTCCA GGAACCACT |
| mm4_intron_Pla2g16_chr19_7569083 |
TGCCCAATCTGGTCTTGGTGGCCAGGAATACCAAGGGTGGTGCTGACCACTTCCCAGGCTACCTGGGAGTTGAAGGTGCC CTTTGGGGGCCATTTAACCCTGAATATAAACCACTCCAGCTCACAGGAAAATTGGCGG |
| mm4_intergenic_Gm7052|Zfp943_chr17_22050733 |
CCAGCCTGGGAGAACACAATTGTATCAGGGATTACCAGGGATCCTAGGGAGGGTGGGATACGGAGATGATGCATGCTGGG ATGGTT |
| mm4_intron_Cpne4_chr9_104985346 |
AACCAGGCAGAGTCAAAGCACCATAGGCAAACTTGATAAATGGGAGGCTCATGGGTTTTTTTTCTTAATTCAGACCATTT TCAAGGCTCCCTGGGATCACAATTTACTTTTAGCATTTGTCAGCCAAGGGA |
| mm4_intergenic_Nin|Abhd12b_chr12_70129920 |
CCTTTGGGGTTTCCTCTCCCATGCCCTCCTCACAGTGCTGATTTTCATGAAAACACATTTTCTAATTCCCCGACCTCGAC CCAGGCTCCCTGAGATTCCCTTTCCTGGCCACGATCAGGTCAAGCAGCAA |
| mm4_intergenic_Wdr43|Fam179a_chr17_71666667 |
TGCCATCCTCACTCACTGTCTCTTTCCAAGGGAGCCTGGGCTGAGGGCCTTATCCCCTGGGGACCAGCAGCTCAGAAAGG AACCC |
| mm4_intergenic_Cx3cl1|Ccl17_chr8_94793063 |
TTCCTTCCCAGGCTAGGTCAGAACTCCCAGGAAGCCTGGGCTGGGGCAATGCTCTGCTTCTCCTCCAGCCTCCTTAAATA CCTGGCTAGCAGAGAAACCTAGTGGGCCTGAGCTA |
| mm4_intergenic_Stox2|4930448N21Rik/Gm10083_chr8_47408728 | GTCTCTGCAGACGTCAGAGACCGTAGCCCAGCATCCCTGGGATCTGAAGTTAGAGGAACCGGTGAGCA |
| mm4_intergenic_Hs3st5|Gm22554_chr10_36734259 |
ACACTAATGAAGGAATTCCAAGTGGAACCACATCCCAGTGGCCCTGGGATCAATAAGACACACTGGACTATCAACAAAGG CTTGCCTGA |
| mm3_intergenic_Gm11366|Mboat1_chr13_30185220 |
TCTAGGTAGCTGGCTCCAGGTTATGATGAGACCCATAGCATCCCAGGAAGCCTTGGCTTTGGGCTCTGCCTGCTCTCTGT CTTCTGG |
| mm4_intron_Gabbr2_chr4_46934462 |
CACTGGGTTTTAGGGAGGCCTTGCCCTTGTCCTCGCCCCTCCCCCTACAACCTTCCTAGAGATGCATCCCTGGTGGGACC ACTGCCAGATCCCAGGGTCCCTGTCATCCCTTCCAACCAGCTTGGCTTTGGAG |
| mm4_intergenic_4930428N03Rik|Gm10398_chr14_24842797 |
AGGTCAGCTGGGTACTCTGAGAAAGGGGAGTCTCCTGGCATCTCCAGATCCCATCCTCCTTGGGATACTGTGTGGAAGAC CAAGAGTCCC |
| mm4_exon_Map3k9_chr12_81721951 |
CAGTGCAAGGAGGAGGTCTGGATCCCAGGGGGCCTGAGACCGGGCTGTGCCAGCCAGCTCCCTCGGCCTCCTCCGTCTTC TCCCTT |
| mm4_exon_Mgat5b_chr11_116986694 |
AGGAACACTGCCATTGCTCATATATGGCCCGCTCCCAGGCCCCCTGGGACCAGACAGTTGTAGGAAGGAACTTTCCTGCG TGGGACTTGCCAGTGTCCCCTGTCCTGGTTGGCCCCTGTCTGTGGCAGCAGAATCCAG |
| mm4_intergenic_Dapk2|Herc1_chr9_66275239 |
CTCCCAGCATATGTTGAAAGCAAAAGAAGGTCACATTTAAATAAGCAAGTGAACCATGAGATCTCTGGAAAGAAACTCCA AGCCCCGTGCTCCCTGGGATATCAAAGCGAGTACATGCGGA |
| mm4_intron_Arl4c_chr1_88682807 |
GGCTATGAGACAGACCTGGCTCAGCCTTGGCAGAGACTTTCAGGATCCCAGTCCCCCAGCCCTGCCTCCCTGGGATTCCA TTTTGATATCATCAGCACCTCCAGGAGA |
| mm4_intergenic_AC161214.1|Gm11033_chr8_74568721 |
CTGGATCAGCCTTCATCCCCCACAGTGTTCCTTATGACCCAGCTCCCAGCCTCCCTGGGGTATTCTCTCTAATGAACCTT CCATTCTTGGTCCTTTATGCTACCCAACTCTTGACAGTAGTAACCCAACCCCATTCCT |
| mm4_intergenic_Isl1|Gm23198_chr13_116606645 |
CCTCACAGCTCTCAGGGTTGCAGGCAGCAGCCCCACCCCCACGCCCCCTGGGATGGCACAGCCTTCTCAGTTTTTGCTGT TAGGAAACTTCCATCAATGCACTGTTTCA |
| mm4_intron_Sntg2_chr12_30311395 |
CATCCAGATCGCCCACAGAGAGTAAAGAAGCTGAGATCCCAGCCTGTCCTTCCCTCAGCCCCGGGTCCCTGGGATTACAA CTGAGTCCTGTAAAGCATGGGG |
| mm4_intron_Smoc2_chr17_14339028 |
GATAGCAGGTGAGAGTGGCCCTGATATTGTCTGCACATCCCAGGGAGCTTATGCTTTGGATATTCCCATGTTATCAGCAA CCAGGCGATGTT |
| mm4_intron_Fam73b_chr2_30364722 |
TGTTGATGTTCACTGTGGGGTTGCCCAATGCCCGGCTGCGTGGGATCCCACAGAGATGTGCAGGGGTGGGACAAACAGGA CAT |
| mm4_intron_Acot7_chr4_152261186 |
CAGGCTGTCCCATCGCTGGCCCCTTGGGATATGATAGCACAGGCTGCCCCATCGCTGGCTCCTTGGGATAGCACAGCGCC CAGGTTCCTTGGGTTGTGT |
| mm4_intergenic_Rbm38/Gm14453|Ctcfl_chr2_173044848 |
ATTGAACATGCCAGCCTCCAACCCCCACAAGGCCCTCAGGAAGGACACCGAGTCCCCAGCTCCCTGGGAGCCTCCTGACC CAGCGGCCCAGCTACGGAGAGCTCACTCCTCTCCAGG |
| mm3_exon_Ipo13_chr4_117894985 |
AGCCTGTCTCCTCTGTAGCAAGGAGGCCTAGCCATATCACAGGCTCTCTGGGATACGTCCACAGCCAAGCTGTGTAAGTG AGCACTGTCTTTTAAGAGACTGCAGATCCTCACAGCA |