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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313785_F | Primer3: not found at this Tm | N.d. | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313785_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intergenic_mmu-mir-6393|Zdhhc25_chr15_87925947_F | Primer3: not found at this Tm | N.d. | 0.68 |
| mm4_intergenic_mmu-mir-6393|Zdhhc25_chr15_87925947_R | Primer3: not found at this Tm | N.d. | 0.68 |
| mm3_intergenic_Veph1|Shox2_chr3_66423976_F | Primer3: not found at this Tm | N.d. | 0.43 |
| mm3_intergenic_Veph1|Shox2_chr3_66423976_R | Primer3: not found at this Tm | N.d. | 0.43 |
| mm4_intron_9330182L06Rik_chr5_9391273_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intron_9330182L06Rik_chr5_9391273_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_RP23-448C3.1/Trpm3|Trpm3_chr19_22467463_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_RP23-448C3.1/Trpm3|Trpm3_chr19_22467463_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Eda2r|Gm9062_chrX_97785674_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Eda2r|Gm9062_chrX_97785674_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Kcnk12|Rpl36-ps4_chr17_87879197_F | TCGTCGGCAGCGTCCCTTGGACCCTTCTGCCTTT | 59.8 | 0.25 |
| mm4_intergenic_Kcnk12|Rpl36-ps4_chr17_87879197_R | GTCTCGTGGGCTCGGACACTATACAGAGGGAGGGTCC | 60.0 | 0.25 |
| mm4_intergenic_Kbtbd8|AY512915_chr6_95221215_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Kbtbd8|AY512915_chr6_95221215_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Dgkb_chr12_37886106_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Dgkb_chr12_37886106_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_4631405K08Rik|Plxna2_chr1_193722503_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_4631405K08Rik|Plxna2_chr1_193722503_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_C330008G21Rik|Ptprt_chr2_162626694_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_C330008G21Rik|Ptprt_chr2_162626694_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Magi2_chr5_20472457_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Magi2_chr5_20472457_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Sept8_chr11_53525599_F | TCGTCGGCAGCGTCTGCTCTCTCCCATACGACCT | 59.7 | 0.17 |
| mm4_intron_Sept8_chr11_53525599_R | GTCTCGTGGGCTCGGCTTAGGCTCTGGTCCCAGGA | 60.3 | 0.17 |
| mm4_intergenic_Nek7|Lhx9_chr1_138771300_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Nek7|Lhx9_chr1_138771300_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm22708|Zbtb46_chr2_181435692_F | TCGTCGGCAGCGTCCAGGACCAAGGGAGCAGAAA | 59.5 | 0.15 |
| mm4_intergenic_Gm22708|Zbtb46_chr2_181435692_R | GTCTCGTGGGCTCGGGAGATTAAGCAGGGCAGCCT | 59.8 | 0.15 |
| mm3_intron_Gpr64_chrX_160409468_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intron_Gpr64_chrX_160409468_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Ighv14-4|Ighv3-3_chr12_114193849_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Ighv14-4|Ighv3-3_chr12_114193849_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm12700|Cachd1_chr4_100749553_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm12700|Cachd1_chr4_100749553_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm25423|Gm26054_chr7_116716283_F | TCGTCGGCAGCGTCGCCACAACCCTCAGTCTTCA | 59.8 | 0.14 |
| mm4_intergenic_Gm25423|Gm26054_chr7_116716283_R | GTCTCGTGGGCTCGGCCCTGCCCTAAAGCATCACT | 59.7 | 0.14 |
| mm4_intron_Plcl1_chr1_55736496_F | TCGTCGGCAGCGTCTGCAGCTCTACATGGAAGCA | 59.3 | 0.12 |
| mm4_intron_Plcl1_chr1_55736496_R | GTCTCGTGGGCTCGGCCTGTTCTGGGCTTGGGTAG | 60.0 | 0.12 |
| mm4_intron_Clock_chr5_76298162_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Clock_chr5_76298162_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Col6a1_chr10_76712680_F | TCGTCGGCAGCGTCTGCTTCAGCCTGTTGATGGT | 59.8 | 0.11 |
| mm4_intron_Col6a1_chr10_76712680_R | GTCTCGTGGGCTCGGGTTTCCCTTCCCAGTGAGCA | 59.8 | 0.11 |
| mm4_intron_D330045A20Rik_chrX_139537235_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_D330045A20Rik_chrX_139537235_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Zfy2_chrY_2133460_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Zfy2_chrY_2133460_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Zfy1_chrY_759925_F | TCGTCGGCAGCGTCTCATCCATGGCCTTCAGTTCT | 59.0 | 0.10 |
| mm4_exon_Zfy1_chrY_759925_R | GTCTCGTGGGCTCGGTGAGTGCCTCAGAGATGCAA | 59.0 | 0.10 |
| mm4_intergenic_Gm5803|Gm19840_chr15_22827561_F | TCGTCGGCAGCGTCTCTTCTTCTCTACCACAGCCT | 57.8 | 0.10 |
| mm4_intergenic_Gm5803|Gm19840_chr15_22827561_R | GTCTCGTGGGCTCGGTCTGTGATGCCCAAAAGCCA | 60.1 | 0.10 |
| mm3_intergenic_Neurog1|Cxcl14_chr13_56259422_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Neurog1|Cxcl14_chr13_56259422_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Esrrg_chr1_187710621_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Esrrg_chr1_187710621_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm25659|Gm25644_chr19_51197077_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm25659|Gm25644_chr19_51197077_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Adam30|Reg4_chr3_98219627_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Adam30|Reg4_chr3_98219627_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sfxn5_chr6_85310087_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sfxn5_chr6_85310087_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm22536|Gm6632_chr5_58462721_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm22536|Gm6632_chr5_58462721_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Rad17_chr13_100623874_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intron_Rad17_chr13_100623874_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Ank1_chr8_23110162_F | TCGTCGGCAGCGTCTCACCTCCTTTCTCCCCACT | 59.8 | 0.08 |
| mm4_intron_Ank1_chr8_23110162_R | GTCTCGTGGGCTCGGCTGACCGTCATACCACCACC | 60.1 | 0.08 |
| mm4_intron_Gm14033_chr2_55428819_F | TCGTCGGCAGCGTCCAGGTCCTCTCAGAAGCAGC | 60.1 | 0.08 |
| mm4_intron_Gm14033_chr2_55428819_R | GTCTCGTGGGCTCGGCCTGGTCAGAGAAAGCCTGG | 60.0 | 0.08 |
| mm4_intron_Slc36a2_chr11_55178293_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Slc36a2_chr11_55178293_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm21865|Gm21882_chrY_40352225_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm21865|Gm21882_chrY_40352225_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm21943|Gm21724_chrY_58021491_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21943|Gm21724_chrY_58021491_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21918|Gm21832_chrY_61037318_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21918|Gm21832_chrY_61037318_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21916|Gm21756_chrY_33180599_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21916|Gm21756_chrY_33180599_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21914|Gm21852_chrY_40518214_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21914|Gm21852_chrY_40518214_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21861|Gm21758_chrY_58888303_F | TCGTCGGCAGCGTCCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21861|Gm21758_chrY_58888303_R | GTCTCGTGGGCTCGGAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21842|Gm21744_chrY_32322058_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21842|Gm21744_chrY_32322058_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21822|Gm21763_chrY_18911680_F | TCGTCGGCAGCGTCGCACAGGCAATCCAAGGTTC | 59.7 | 0.06 |
| mm4_intergenic_Gm21822|Gm21763_chrY_18911680_R | GTCTCGTGGGCTCGGTCTGGGGTTATACATGGTGGT | 58.1 | 0.06 |
| mm4_intergenic_Gm21805|Gm21241_chrY_42873097_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21805|Gm21241_chrY_42873097_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21803|Gm20837_chrY_90336261_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21803|Gm20837_chrY_90336261_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21780|Gm21737_chrY_31307400_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21780|Gm21737_chrY_31307400_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21779|Gm21247_chrY_45891024_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21779|Gm21247_chrY_45891024_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21767|Gm20822_chrY_14199410_F | TCGTCGGCAGCGTCGCACAGGCAATCCAAGGTTC | 59.7 | 0.06 |
| mm4_intergenic_Gm21767|Gm20822_chrY_14199410_R | GTCTCGTGGGCTCGGTCTGGGGTTATACATGGTGGT | 58.1 | 0.06 |
| mm4_intergenic_Gm21758|Gm21843_chrY_59695244_F | TCGTCGGCAGCGTCCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21758|Gm21843_chrY_59695244_R | GTCTCGTGGGCTCGGAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21751|Gm21271_chrY_48246923_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21751|Gm21271_chrY_48246923_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21745|Gm21184_chrY_34226362_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21745|Gm21184_chrY_34226362_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21739|Gm21856_chrY_44410439_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21739|Gm21856_chrY_44410439_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21739|Gm21856_chrY_44321891_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21739|Gm21856_chrY_44321891_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21724|Gm21405_chrY_58508785_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21724|Gm21405_chrY_58508785_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21679|Gm21529_chrY_30812193_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21679|Gm21529_chrY_30812193_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21679|Gm21529_chrY_29749771_F | TCGTCGGCAGCGTCCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21679|Gm21529_chrY_29749771_R | GTCTCGTGGGCTCGGAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21247|Gm21256_chrY_47385998_F | TCGTCGGCAGCGTCAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21247|Gm21256_chrY_47385998_R | GTCTCGTGGGCTCGGCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21247|Gm21256_chrY_46832972_F | TCGTCGGCAGCGTCCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21247|Gm21256_chrY_46832972_R | GTCTCGTGGGCTCGGAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21170|Gm21751_chrY_47752955_F | TCGTCGGCAGCGTCCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm21170|Gm21751_chrY_47752955_R | GTCTCGTGGGCTCGGAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm21094|Gm21588_chrY_32685432_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm21094|Gm21588_chrY_32685432_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm20901|Gm21865_chrY_39389564_F | TCGTCGGCAGCGTCGGCACAGGCAATCCAAGGAT | 60.6 | 0.06 |
| mm4_intergenic_Gm20901|Gm21865_chrY_39389564_R | GTCTCGTGGGCTCGGTCTGGGGTTATACATGGTGGT | 58.1 | 0.06 |
| mm4_intergenic_Gm20901|Gm21865_chrY_38960203_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm20901|Gm21865_chrY_38960203_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm20838|Gm21626_chrY_33608101_F | TCGTCGGCAGCGTCCTTCTCTCATCGTCTGCGGT | 59.5 | 0.06 |
| mm4_intergenic_Gm20838|Gm21626_chrY_33608101_R | GTCTCGTGGGCTCGGAAGGATCACCATGCTTCCCA | 58.9 | 0.06 |
| mm4_intergenic_Gm20810|Gm21853_chrY_29134561_F | TCGTCGGCAGCGTCGGCACAGGCAATCCAAGGAT | 60.6 | 0.06 |
| mm4_intergenic_Gm20810|Gm21853_chrY_29134561_R | GTCTCGTGGGCTCGGTCTGGGGTTATACATGGTGGT | 58.1 | 0.06 |
| mm4_intergenic_Gm20794|Gm21918_chrY_60543337_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm20794|Gm21918_chrY_60543337_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_1700040F15Rik|Gm21562_chrY_31708385_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_1700040F15Rik|Gm21562_chrY_31708385_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Ercc6_chr14_32536440_F | TCGTCGGCAGCGTCTGAGACCTCCTGTGTGCCTA | 59.8 | 0.06 |
| mm4_intron_Ercc6_chr14_32536440_R | GTCTCGTGGGCTCGGTCCTTTGCCTTAGAGGAAGCTG | 60.0 | 0.06 |
| mm4_intron_Itih5_chr2_10225553_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Itih5_chr2_10225553_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Shprh|Gm16577/Shprh_chr10_11210231_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Shprh|Gm16577/Shprh_chr10_11210231_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Rarb|Thrb_chr14_16797504_F | TCGTCGGCAGCGTCTTCTGCTCTGGTCTGTCTGC | 59.6 | 0.05 |
| mm4_intergenic_Rarb|Thrb_chr14_16797504_R | GTCTCGTGGGCTCGGGGGACTGGGAAATCACGACA | 59.6 | 0.05 |
| mm4_intergenic_Fau-ps1|Macrod2_chr2_141944759_F | TCGTCGGCAGCGTCTGAGAGTTTTCTTATGGCAGCA | 57.9 | 0.04 |
| mm4_intergenic_Fau-ps1|Macrod2_chr2_141944759_R | GTCTCGTGGGCTCGGTCTTGCATTCGCTGACCCTT | 59.9 | 0.04 |
| mm4_intergenic_Gm8730|Cdh5_chr8_103588461_F | TCGTCGGCAGCGTCACACTTGTCTCCCAGGGACT | 60.1 | 0.04 |
| mm4_intergenic_Gm8730|Cdh5_chr8_103588461_R | GTCTCGTGGGCTCGGGGAGCTAGGCTTTCTCTTGCA | 60.0 | 0.04 |
| mm4_intron_Fat3_chr9_16349244_F | TCGTCGGCAGCGTCCCTGTCTGTGAGTGTTAAACCC | 58.8 | 0.04 |
| mm4_intron_Fat3_chr9_16349244_R | GTCTCGTGGGCTCGGAGAGTCTCCTGCAGCTACCA | 59.9 | 0.04 |
| mm4_intergenic_Cadm1|Nxpe2_chr9_48290502_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cadm1|Nxpe2_chr9_48290502_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Il10ra_chr9_45254414_F | TCGTCGGCAGCGTCGTATAGGGAGGCAGGGACCA | 60.1 | 0.03 |
| mm4_exon_Il10ra_chr9_45254414_R | GTCTCGTGGGCTCGGCTTCCACCTCATGCCAGTGT | 59.9 | 0.03 |
| mm4_intergenic_Gm23558|Galc_chr12_98009523_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm23558|Galc_chr12_98009523_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Ythdf3|Gm26485_chr3_16709680_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Ythdf3|Gm26485_chr3_16709680_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Nhsl1_chr10_18429079_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Nhsl1_chr10_18429079_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cnot6|Gm12192_chr11_49690580_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cnot6|Gm12192_chr11_49690580_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm6531|Olfr371_chr8_85174380_F | TCGTCGGCAGCGTCGCACACTGGGACAAAGAGGA | 59.8 | 0.03 |
| mm4_intergenic_Gm6531|Olfr371_chr8_85174380_R | GTCTCGTGGGCTCGGTGAGAAAATGATAATGAAGGCCACT | 58.8 | 0.03 |
| mm4_exon_Olfr1154_chr2_87903223_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Olfr1154_chr2_87903223_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Pde7b|Ahi1_chr10_20908803_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Pde7b|Ahi1_chr10_20908803_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm14544|4930525M21Rik/4930525M21RIK_chrX_37952860_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm14544|4930525M21Rik/4930525M21RIK_chrX_37952860_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Sp4|Gm25577_chr12_118468574_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Sp4|Gm25577_chr12_118468574_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Lonp2_chr8_86705363_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Lonp2_chr8_86705363_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_A730085K08Rik|9530059O14Rik_chr9_122499548_F | TCGTCGGCAGCGTCCAGCAGTGATGATGGAAAGCC | 59.5 | 0.01 |
| mm4_intergenic_A730085K08Rik|9530059O14Rik_chr9_122499548_R | GTCTCGTGGGCTCGGAGGCTATGTGAACAGCCTGG | 59.7 | 0.01 |
| mm4_intron_Vrk1_chr12_106034049_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Vrk1_chr12_106034049_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Opcml|Ntm_chr9_28944990_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Opcml|Ntm_chr9_28944990_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dync1i1_chr6_5893610_F | TCGTCGGCAGCGTCAGGGACTTCATGTTTGAGCCA | 59.5 | 0.01 |
| mm4_intron_Dync1i1_chr6_5893610_R | GTCTCGTGGGCTCGGTCGCAGTCTGATTCTGAACGA | 59.4 | 0.01 |
| mm4_intergenic_Scarb1|Ubc_chr5_125364091_F | TCGTCGGCAGCGTCGCCAGCGCATACTGCTCTAT | 60.3 | 0.01 |
| mm4_intergenic_Scarb1|Ubc_chr5_125364091_R | GTCTCGTGGGCTCGGAACCATTGAACCATGCCCCA | 60.1 | 0.01 |
| mm4_intergenic_Cdh7|Cdh19_chr1_110166439_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cdh7|Cdh19_chr1_110166439_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rgs6|Gm22149_chr12_82694809_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rgs6|Gm22149_chr12_82694809_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Wdpcp_chr11_21714072_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Wdpcp_chr11_21714072_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tyw1_chr5_130319584_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tyw1_chr5_130319584_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tpm1_chr9_67032157_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tpm1_chr9_67032157_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Slc9a2_chr1_40734902_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Slc9a2_chr1_40734902_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Pnpla7_chr2_25021415_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Pnpla7_chr2_25021415_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Glis3_chr19_28406025_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Glis3_chr19_28406025_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cwf19l1_chr19_44127036_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cwf19l1_chr19_44127036_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Col22a1_chr15_71950279_F | TCGTCGGCAGCGTCACCCAGATCGAAGGAGCAAA | 59.0 | 0.00 |
| mm4_intron_Col22a1_chr15_71950279_R | GTCTCGTGGGCTCGGCTGCCCAGGGAGAAGTCAAC | 60.3 | 0.00 |
| mm4_intergenic_Xrcc4|Gm4117_chr13_89856412_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Xrcc4|Gm4117_chr13_89856412_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pvrl3|Gm6912_chr16_46589145_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pvrl3|Gm6912_chr16_46589145_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Myl9|Gm14231_chr2_156783833_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Myl9|Gm14231_chr2_156783833_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Lpl|Slc18a1_chr8_69014012_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Lpl|Slc18a1_chr8_69014012_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Kcna6|Kcna6/Gm26673_chr6_126732832_F | TCGTCGGCAGCGTCTTAAGGCAGCAGTTCCAGCA | 59.8 | 0.00 |
| mm4_intergenic_Kcna6|Kcna6/Gm26673_chr6_126732832_R | GTCTCGTGGGCTCGGGCTTCTGTGATGCAGGCTTG | 59.8 | 0.00 |
| mm4_intergenic_Gm23061|Ostf1_chr19_18547124_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23061|Ostf1_chr19_18547124_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22307|Gm6085_chr1_4574280_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22307|Gm6085_chr1_4574280_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm15941|4930447A16Rik_chr15_37438986_F | TCGTCGGCAGCGTCTCCCTGTCATCCAAGGTTTCC | 59.6 | 0.00 |
| mm4_intergenic_Gm15941|4930447A16Rik_chr15_37438986_R | GTCTCGTGGGCTCGGGCCAACAAGTTTGCATAGGGG | 60.0 | 0.00 |
| mm4_intergenic_Gm11999|Ikzf1_chr11_11658649_F | TCGTCGGCAGCGTCAGTTATGTGCCAGACAGATGCA | 60.0 | 0.00 |
| mm4_intergenic_Gm11999|Ikzf1_chr11_11658649_R | GTCTCGTGGGCTCGGACATACCACTGCACCCAAGG | 59.9 | 0.00 |
| mm4_intergenic_1700001G01Rik|Gm26235_chr18_17908665_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_1700001G01Rik|Gm26235_chr18_17908665_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Tgif2/5430405H02Rik_chr2_156853642_F | TCGTCGGCAGCGTCTACACACTCCGCTGCCTTTC | 60.3 | 0.00 |
| mm4_exon_Tgif2/5430405H02Rik_chr2_156853642_R | GTCTCGTGGGCTCGGAATGGTCCTGATGCTTGGCA | 59.9 | 0.00 |
| mm4_exon_Gm7148_chr17_40116063_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gm7148_chr17_40116063_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gm12605_chr4_89217808_F | TCGTCGGCAGCGTCTGCCACCTTTGCTACACACT | 59.8 | 0.00 |
| mm4_exon_Gm12605_chr4_89217808_R | GTCTCGTGGGCTCGGGCTTGGCAGTGATCCGTACT | 60.1 | 0.00 |
| mm3_intron_Tmcc1_chr6_116101377_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Tmcc1_chr6_116101377_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Trim29|Pvrl1_chr9_43427196_F | TCGTCGGCAGCGTCTGCTGGGCTTGCTTTCTTTG | 59.6 | 0.00 |
| mm3_intergenic_Trim29|Pvrl1_chr9_43427196_R | GTCTCGTGGGCTCGGAAACTGGCCCATACTCTGGC | 60.0 | 0.00 |
| mm3_intergenic_Gm10051|Gm15627_chr5_134067821_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Gm10051|Gm15627_chr5_134067821_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_intergenic_Kcnk12|Rpl36-ps4_chr17_87879197 |
CCTTGGACCCTTCTGCCTTTGTAGCAGCATGGTGATCAGCTGCGTGCCTCACGGGTGATTCAGGCCCACCTGGGAATAGA GACCATGAAAGCTCCTGACCCCTGGCAGGGACCCTCCCTCTGTATAGTGT |
| mm4_intron_Sept8_chr11_53525599 |
TGCTCTCTCCCATACGACCTTTTAGTTATTTCCCGTGACCTCTGACCTGGGTTTAGAGGCTTGCTTGGAATCCTGGGACC AGAGCCTAAG |
| mm4_intergenic_Gm22708|Zbtb46_chr2_181435692 |
CAGGACCAAGGGAGCAGAAAGTTCTGTGACTCACAAATTCAAGCTGTGGCATTTGTGACAGTCATACGACACTTCTACCA AGTAGCCACCTAATACCAGGGAAGCAAAGGCTGCCCTGCTTAATCTC |
| mm4_intergenic_Gm25423|Gm26054_chr7_116716283 |
GCCACAACCCTCAGTCTTCATGTGTTTCCATCTGTACTCCCTGGGATTAGCCTCTTGCTTGGCTCTCTTGTGTACAGGGT CTCCTGGCTTTGGGACTTTTCATTTACTCTGCTGTCTCTGAGTGATGCTTTAGGGCAGGG |
| mm4_intron_Plcl1_chr1_55736496 |
TGCAGCTCTACATGGAAGCAGAGGAATGGACCAAATGGCTTCCCAAGGATGTTTCTAATCCCTGGAGCCCAAGATGCACT GGCTCTACCCAAGCCCAGAACAGG |
| mm4_intron_Col6a1_chr10_76712680 |
TGCTTCAGCCTGTTGATGGTTACTTGAAACATTAGGGAGAAAGGCCAGGGATCAGCAGCTTCCTAGGAGGCCTGACCCCA GGGCACTGCTCACTGGGAAGGGAAAC |
| mm4_exon_Zfy1_chrY_759925 |
TCATCCATGGCCTTCAGTTCTTACTAAGTCAGCTCCTAAACCAGGGAACAACAAATACTGNNNNNNNNNNNNNNNNNNNN NGTCATATTTGCATCTCTGAGGCACTCA |
| mm4_intergenic_Gm5803|Gm19840_chr15_22827561 |
TCTTCTTCTCTACCACAGCCTATTTCATTTAAGCTTCTAATCCCAGGTTCTTTGTCATTTCTTTCTTCAATATAAATTAA TCTTGGCTTTTGGGCATCACAGA |
| mm4_intron_Ank1_chr8_23110162 |
TCACCTCCTTTCTCCCCACTCCCAAGTAAGCCCCAAATCAAGGGAACCCAGGATAGCGAGGATGGGCTTGATCTGTGGCC CCCTCTGTCTAGAATTTGGTGGTGGTATGACGGTCAG |
| mm4_intron_Gm14033_chr2_55428819 |
CAGGTCCTCTCAGAAGCAGCTCTTCCGCTGGTGGATGCCAGTTATTAGCAGCTTAGTTGGGTTTAAGGTCCAGGCTTTCT CTGACCAGG |
| mm4_intergenic_Gm21918|Gm21832_chrY_61037318 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21916|Gm21756_chrY_33180599 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21861|Gm21758_chrY_58888303 |
CTTCTCTCATCGTCTGCGGTTATACATGGTGATATTTATGAGACCTCTAAATGATCCCTAGGATTAGGAGCATAGATGGT AGAGTTGGGAGTGGATATATAGACTGGAGAGATAAAATGGGAAGCATGGTGATCCTT |
| mm4_intergenic_Gm21842|Gm21744_chrY_32322058 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21822|Gm21763_chrY_18911680 |
GCACAGGCAATCCAAGGTTCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATG CTCCTAATCCTAGGGATCATTTAGAGGTCTCATAAATACCACCATGTATAACCCCAGA |
| mm4_intergenic_Gm21805|Gm21241_chrY_42873097 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21803|Gm20837_chrY_90336261 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21780|Gm21737_chrY_31307400 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21767|Gm20822_chrY_14199410 |
GCACAGGCAATCCAAGGTTCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATG CTCCTAATCCTAGGGATCATTTAGAGGTCTCATAAATACCACCATGTATAACCCCAGA |
| mm4_intergenic_Gm21758|Gm21843_chrY_59695244 |
CTTCTCTCATCGTCTGCGGTTATACATGGTGATATTTATGAGACCTCTAAATGATCCCTAGGATTAGGAGCATAGATGGT AGAGTTGGGAGTGGATATATAGACTGGAGAGATAAAATGGGAAGCATGGTGATCCTT |
| mm4_intergenic_Gm21751|Gm21271_chrY_48246923 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21745|Gm21184_chrY_34226362 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21724|Gm21405_chrY_58508785 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21679|Gm21529_chrY_29749771 |
CTTCTCTCATCGTCTGCGGTTATACATGGTGATATTTATGAGACCTCTAAATGATCCCTAGGATTAGGAGCATAGATGGT AGAGTTGGGAGTGGATATATAGACTGGAGAGATAAAATGGGAAGCATGGTGATCCTT |
| mm4_intergenic_Gm21247|Gm21256_chrY_47385998 |
AAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTATGCTCCTAATCCTAG GGATCATTTAGAGGTCTCATAAATATCACCATGTATAACCGCAGACGATGAGAGAAG |
| mm4_intergenic_Gm21247|Gm21256_chrY_46832972 |
CTTCTCTCATCGTCTGCGGTTATACATGGTGATATTTATGAGACCTCTAAATGATCCCTAGGATTAGGAGCATAGATGGT AGAGTTGGGAGTGGATATATAGACTGGAGAGATAAAATGGGAAGCATGGTGATCCTT |
| mm4_intergenic_Gm21170|Gm21751_chrY_47752955 |
CTTCTCTCATCGTCTGCGGTTATACATGGTGATATTTATGAGACCTCTAAATGATCCCTAGGATTAGGAGCATAGATGGT AGAGTTGGGAGTGGATATATAGACTGGAGAGATAAAATGGGAAGCATGGTGATCCTT |
| mm4_intergenic_Gm20901|Gm21865_chrY_39389564 |
GGCACAGGCAATCCAAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTAT GCTCCTAATCCTAGGGATCATTTAGAGGTCTCATAAATACCACCATGTATAACCCCAGA |
| mm4_intergenic_Gm20838|Gm21626_chrY_33608101 |
CTTCTCTCATCGTCTGCGGTTATACATGGTGATATTTATGAGACCTCTAAATGATCCCTAGGATTAGGAGCATAGATGGT AGAGTTGGGAGTGGATATATAGACTGGAGAGATAAAATGGGAAGCATGGTGATCCTT |
| mm4_intergenic_Gm20810|Gm21853_chrY_29134561 |
GGCACAGGCAATCCAAGGATCACCATGCTTCCCATTTTATCTCTCCAGTCTATATATCCACTCCCAACTCTACCATCTAT GCTCCTAATCCTAGGGATCATTTAGAGGTCTCATAAATACCACCATGTATAACCCCAGA |
| mm4_intron_Ercc6_chr14_32536440 |
TGAGACCTCCTGTGTGCCTAGGACGTCCTAGGATTAGGATGGTACTTGGTAGACCAGATGCCTAAGTCTACTTGACCAGG AACAGCTTCCTCTAAGGCAAAGGA |
| mm4_intergenic_Rarb|Thrb_chr14_16797504 |
TTCTGCTCTGGTCTGTCTGCCCCTACCCCTTCTCCATGCCCCTACTTCCTTTTTGCCCAAATAACCTCCTTATACCAGGT GTATTGCATGTCGTGATTTCCCAGTCCC |
| mm4_intergenic_Fau-ps1|Macrod2_chr2_141944759 |
TGAGAGTTTTCTTATGGCAGCATAACTGGGAGCATAATTAACCATGAAGACACAGTGTATTTCCATTTTAGCTTCTAATC CCAGGAGATACCATGTTTTAGAGCTATGAGTAATTAAAGGGTCAGCGAATGCAAGA |
| mm4_intergenic_Gm8730|Cdh5_chr8_103588461 |
ACACTTGTCTCCCAGGGACTCTTGACCTTCAAGTTCTCTCCTTCAGAGCTGATCCAGGTTAGCTCCTAAACCTGGGAAAA AAATCTAAAATCCAAAGACGTATTGTTAACCCTGAGATTTGCAAGAGAAAGCCTAGCTCC |
| mm4_intron_Fat3_chr9_16349244 |
CCTGTCTGTGAGTGTTAAACCCAATTTAAGGCAGAGATTAGAAGCCATCATATTACATTACCTATAGAAAAACCCAGGTG CCCAAGAATGTTCCTAATCGCGGGTCCAGGAAGTGATGGTAGCTGCAGGAGACTCT |
| mm4_exon_Il10ra_chr9_45254414 |
GTATAGGGAGGCAGGGACCAGCCCTAGACCCCAGGGACTAGCAGCTCCCTTGGCACAAGGCCCTAGGCTCCCACAAGATC TCTGAAACACTGGCATGAGGTGGAAG |
| mm4_intergenic_Gm6531|Olfr371_chr8_85174380 |
GCACACTGGGACAAAGAGGAAGCACACTTTCTCAGCAGAGAATCTCGATGTTCTGCCAAGTAAGCTGCTTACCCAAGGAA GTGGCCTTCATTATCATTTTCTCA |
| mm4_intergenic_A730085K08Rik|9530059O14Rik_chr9_122499548 |
CAGCAGTGATGATGGAAAGCCAAAATTCCCAAGAAAACTCCTCAGCCCAGGGACTATGTCCAGCCCAGGCTGTTCACATA GCCT |
| mm4_intron_Dync1i1_chr6_5893610 |
AGGGACTTCATGTTTGAGCCAATGGGAAAACATGAAGTTAACACTAGGGGAAATGACTTAGCCCCCAATAAAGCTGCTAA TGCCAGGATAAAAGCAAACAAATCTGTTAATGATCTTCGTTCAGAATCAGACTGCGA |
| mm4_intergenic_Scarb1|Ubc_chr5_125364091 |
GCCAGCGCATACTGCTCTATATCCTGCCATTAGGAACTTACTTCGCTAGCACAGTGTCCTGGCAGTCTGCCCACTGCAGT CTGGGTCAAATGTCCTTTCTTCAAGAGTGAGTGAGGACTGGGGCATGGTTCAATGGTT |
| mm4_intron_Col22a1_chr15_71950279 |
ACCCAGATCGAAGGAGCAAATGAGAGCTAAGAAATTATATACCTTTCCAAGTAAGCTGTGAGTCCCAGGCACCAACTAGG CCTTTTGAGTTCTAATCAAGGGATCTTGGGTCTGGAAATGTTGACTTCTCCCTGGGCAG |
| mm4_intergenic_Kcna6|Kcna6/Gm26673_chr6_126732832 |
TTAAGGCAGCAGTTCCAGCAGACGGCTCAGGGAGCCTGGCATCTCCTGGGAATGGGATCTTTCTTGGCATTTACATGGAG ATGCAAAGTGAGAGAAATAGCACTGCCAGCCAAGCCTGCATCACAGAAGC |
| mm4_intergenic_Gm15941|4930447A16Rik_chr15_37438986 |
TCCCTGTCATCCAAGGTTTCCTAACAAGCAAGCTTCTATTCCCTGGCAACCAAAGTTACACTGAATAATGGTTAAAAATG ACAGATCCCCTATGCAAACTTGTTGGC |
| mm4_intergenic_Gm11999|Ikzf1_chr11_11658649 |
AGTTATGTGCCAGACAGATGCAGCCAAGTAAGCTATGAACCCCAGGATATGTTATCATTGATGGGATAATGGCTCTTAAA GCCTTGGGTGCAGTGGTATGT |
| mm4_exon_Tgif2/5430405H02Rik_chr2_156853642 |
TACACACTCCGCTGCCTTTCGTCTCAGAAAACGCCAAGTAGGCACCTGCTCCCGGGTGGCTTGAGGTTCCTGGCTCACTG CCCTTTCATGCAGAGGGTTATCCAAGTACGGATCACTGCCAAGCATCAGGACCATT |
| mm4_exon_Gm12605_chr4_89217808 |
TGCCACCTTTGCTACACACTCCTATGCCTCTCGTCTCAGAAAACGCCAAGTAGGCACCTGCTCCCGGGTGGCTTGAGGTT CCTGGCTCACTGCCCTTTCATACAGAGGGTTATCCAAGTACGGATCACTGCCAAGC |
| mm3_intergenic_Trim29|Pvrl1_chr9_43427196 |
TGCTGGGCTTGCTTTCTTTGTGTGCTTGCTCAGTTACCAAGTTAGCTCGTATTCCCTGGCAAGCACTGGGCAGCCAGAGT ATGGGCCAGTTT |