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Contents:

PCR primers for off-targets of TTGGCTGAGAAGAGGAGCTA AGG

In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.

In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.

If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.

Maximum amplicon length:     Primer Tm:

NamePrimer Sequence Tm CFD Score
ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313750_F TCGTCGGCAGCGTCCGCATCACAAGGTGACCCTA 59.7 1.00
ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313750_R GTCTCGTGGGCTCGGCTCCTAATCCCAGGCTCCCT 60.1 1.00
mm3_intron_0610012H03Rik_chr2_105266180_F Primer3: not found at this Tm N.d. 0.76
mm3_intron_0610012H03Rik_chr2_105266180_R Primer3: not found at this Tm N.d. 0.76
mm3_intergenic_4930444G20Rik|Gm2539_chr10_22071941_F Primer3: not found at this Tm N.d. 0.75
mm3_intergenic_4930444G20Rik|Gm2539_chr10_22071941_R Primer3: not found at this Tm N.d. 0.75
mm4_intergenic_Slc26a4|Bcap29_chr12_31584645_F Primer3: not found at this Tm N.d. 0.67
mm4_intergenic_Slc26a4|Bcap29_chr12_31584645_R Primer3: not found at this Tm N.d. 0.67
mm4_intergenic_Tspan9|Gm10010_chr6_128168301_F TCGTCGGCAGCGTCACACCATGTCTCAGCACAGG 59.9 0.57
mm4_intergenic_Tspan9|Gm10010_chr6_128168301_R GTCTCGTGGGCTCGGGGGAGTTGGGGACATGACTG 60.0 0.57
mm4_intergenic_Gm4691|Tead4_chr6_128223755_F TCGTCGGCAGCGTCTACACACCACGTCTCAGCAC 59.9 0.57
mm4_intergenic_Gm4691|Tead4_chr6_128223755_R GTCTCGTGGGCTCGGGGGAGTTGGGGACATGACTG 60.0 0.57
mm4_intron_4930433N12Rik_chr9_3178199_F TCGTCGGCAGCGTCTTGGGTTGAGAGTTGGGGAC 59.5 0.56
mm4_intron_4930433N12Rik_chr9_3178199_R GTCTCGTGGGCTCGGACAGCAAATCACACCCCTGT 59.8 0.56
mm4_intergenic_Mapk4/Gm9925|Ska1_chr18_74093610_F TCGTCGGCAGCGTCTGGGGCTCAGAGAGATCACA 59.9 0.52
mm4_intergenic_Mapk4/Gm9925|Ska1_chr18_74093610_R GTCTCGTGGGCTCGGGCTTCGCACACCTGTCTAGT 60.0 0.52
mm3_intergenic_Tle3|Rplp1_chr9_61495097_F Primer3: not found at this Tm N.d. 0.48
mm3_intergenic_Tle3|Rplp1_chr9_61495097_R Primer3: not found at this Tm N.d. 0.48
mm4_intron_Syce2_chr8_84881297_F Primer3: not found at this Tm N.d. 0.48
mm4_intron_Syce2_chr8_84881297_R Primer3: not found at this Tm N.d. 0.48
mm4_intron_Spg7_chr8_123078261_F Primer3: not found at this Tm N.d. 0.46
mm4_intron_Spg7_chr8_123078261_R Primer3: not found at this Tm N.d. 0.46
mm4_intergenic_A630031M04Rik|1700112K13Rik_chr4_127666177_F TCGTCGGCAGCGTCGATAAGACAGCAGGAGGGGC 59.8 0.44
mm4_intergenic_A630031M04Rik|1700112K13Rik_chr4_127666177_R GTCTCGTGGGCTCGGAGAACCACGGCACTATCAGC 60.1 0.44
mm4_intergenic_Gm23315|Rprm_chr2_53984018_F TCGTCGGCAGCGTCGACACTCCTGTCTGAACACACT 59.8 0.43
mm4_intergenic_Gm23315|Rprm_chr2_53984018_R GTCTCGTGGGCTCGGTCCACATTTTCCACAGGCCA 59.8 0.43
mm4_intergenic_Gm8513|Gm23755_chr13_45213446_F TCGTCGGCAGCGTCTGCAAGCAAGAGCAATCCTT 58.3 0.41
mm4_intergenic_Gm8513|Gm23755_chr13_45213446_R GTCTCGTGGGCTCGGCAGAGGCCAGGAGACAACAG 60.0 0.41
mm3_intron_Lars2_chr9_123372431_F Primer3: not found at this Tm N.d. 0.41
mm3_intron_Lars2_chr9_123372431_R Primer3: not found at this Tm N.d. 0.41
mm4_intergenic_Gm10480|5730507C01Rik_chr12_18466647_F Primer3: not found at this Tm N.d. 0.41
mm4_intergenic_Gm10480|5730507C01Rik_chr12_18466647_R Primer3: not found at this Tm N.d. 0.41
mm4_intron_RP24-289J12.1_chr15_75643342_F Primer3: not found at this Tm N.d. 0.40
mm4_intron_RP24-289J12.1_chr15_75643342_R Primer3: not found at this Tm N.d. 0.40
mm4_intergenic_Vmn2r-ps119|Vmn2r-ps120_chr17_19276418_F Primer3: not found at this Tm N.d. 0.38
mm4_intergenic_Vmn2r-ps119|Vmn2r-ps120_chr17_19276418_R Primer3: not found at this Tm N.d. 0.38
mm3_intergenic_Ppp3ca|Gm26107_chr3_136965216_F Primer3: not found at this Tm N.d. 0.37
mm3_intergenic_Ppp3ca|Gm26107_chr3_136965216_R Primer3: not found at this Tm N.d. 0.37
mm4_intergenic_MIMT1_1|Mir3099_chr7_6797499_F TCGTCGGCAGCGTCTCTGCAGGGTAGGGATGGAT 59.7 0.36
mm4_intergenic_MIMT1_1|Mir3099_chr7_6797499_R GTCTCGTGGGCTCGGCACACCTGCAAAGTCAAGGC 59.9 0.36
mm4_intron_Vopp1_chr6_57790707_F Primer3: not found at this Tm N.d. 0.35
mm4_intron_Vopp1_chr6_57790707_R Primer3: not found at this Tm N.d. 0.35
mm4_intron_Cyfip1_chr7_55880760_F TCGTCGGCAGCGTCCCCAAGTCTTGAAGCTCCGT 59.9 0.35
mm4_intron_Cyfip1_chr7_55880760_R GTCTCGTGGGCTCGGGGACCGGGGTCAAACAGTTA 59.6 0.35
mm4_intron_Mecom_chr3_30190425_F Primer3: not found at this Tm N.d. 0.34
mm4_intron_Mecom_chr3_30190425_R Primer3: not found at this Tm N.d. 0.34
mm4_intergenic_Iqch|Gm16759_chr9_63526377_F Primer3: not found at this Tm N.d. 0.34
mm4_intergenic_Iqch|Gm16759_chr9_63526377_R Primer3: not found at this Tm N.d. 0.34
mm4_exon_Pgd_chr4_149150553_F TCGTCGGCAGCGTCGGAGCATGTGGTGGTTCAGA 59.9 0.32
mm4_exon_Pgd_chr4_149150553_R GTCTCGTGGGCTCGGTCCCTCCCAGCAATAGGACA 59.9 0.32
mm4_intergenic_mmu-mir-8096|Gm25472_chr1_85752706_F Primer3: not found at this Tm N.d. 0.30
mm4_intergenic_mmu-mir-8096|Gm25472_chr1_85752706_R Primer3: not found at this Tm N.d. 0.30
mm4_intron_Arid2_chr15_96377526_F Primer3: not found at this Tm N.d. 0.30
mm4_intron_Arid2_chr15_96377526_R Primer3: not found at this Tm N.d. 0.30
mm4_intergenic_Otc|4933416E14Rik_chrX_10347091_F Primer3: not found at this Tm N.d. 0.30
mm4_intergenic_Otc|4933416E14Rik_chrX_10347091_R Primer3: not found at this Tm N.d. 0.30
mm4_intron_Eya1_chr1_14293677_F Primer3: not found at this Tm N.d. 0.30
mm4_intron_Eya1_chr1_14293677_R Primer3: not found at this Tm N.d. 0.30
mm3_intergenic_n-R5s82|Pknox2_chr9_37034020_F TCGTCGGCAGCGTCTGGCATGATGGGACAACACT 59.5 0.29
mm3_intergenic_n-R5s82|Pknox2_chr9_37034020_R GTCTCGTGGGCTCGGGGGAGTGCTTTGCCTTGAGT 60.5 0.29
mm4_intron_Bpi_chr2_158273089_F TCGTCGGCAGCGTCTGTGCACTGGTGTCCATAGTC 59.9 0.29
mm4_intron_Bpi_chr2_158273089_R GTCTCGTGGGCTCGGTGTTCAGCTGGAATCTGCCA 59.5 0.29
mm4_intron_Il1rap_chr16_26683654_F TCGTCGGCAGCGTCAGAAAAGAAAGAAGAGGGGAGAGT 59.0 0.28
mm4_intron_Il1rap_chr16_26683654_R GTCTCGTGGGCTCGGTCTGGTGTTCTATTGCTCTGTT 57.3 0.28
mm2_exon_Col20a1_chr2_180996450_F TCGTCGGCAGCGTCCAGCCACTGGACATCACTGT 59.9 0.28
mm2_exon_Col20a1_chr2_180996450_R GTCTCGTGGGCTCGGTGCTGTGTTCTTACCTGGGC 60.2 0.28
mm4_intergenic_Irx4|Gm10263_chr13_73273151_F Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Irx4|Gm10263_chr13_73273151_R Primer3: not found at this Tm N.d. 0.28
mm4_intron_Gng2_chr14_19951276_F TCGTCGGCAGCGTCAGAGATCAAACAGCATCCCACA 59.6 0.27
mm4_intron_Gng2_chr14_19951276_R GTCTCGTGGGCTCGGTTACTCTGGAGCGAGGAGGT 59.6 0.27
mm4_intron_Syn3_chr10_86255017_F Primer3: not found at this Tm N.d. 0.25
mm4_intron_Syn3_chr10_86255017_R Primer3: not found at this Tm N.d. 0.25
mm4_intergenic_Prrg2/Nosip|Nosip_chr7_45068936_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Prrg2/Nosip|Nosip_chr7_45068936_R Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Nhsl2|Gm25828_chrX_101884431_F TCGTCGGCAGCGTCTGGAAGGCCAAGGTGAGTTC 59.8 0.24
mm4_intergenic_Nhsl2|Gm25828_chrX_101884431_R GTCTCGTGGGCTCGGCCTGGCAGTCATCTAGCAGG 59.8 0.24
mm4_intergenic_Mageb17-ps|Gm14781_chrX_91626440_F TCGTCGGCAGCGTCTGTCAGGACTCATCGCAGA 58.0 0.24
mm4_intergenic_Mageb17-ps|Gm14781_chrX_91626440_R GTCTCGTGGGCTCGGTTGCAAAATAACAAAGGAAATGCA 57.0 0.24
mm4_intergenic_Zfp42|Gm22986_chr8_43371620_F TCGTCGGCAGCGTCGCACACTACAACTGCATTCCA 59.1 0.24
mm4_intergenic_Zfp42|Gm22986_chr8_43371620_R GTCTCGTGGGCTCGGTGGAATTCATCAGGAAACACAGA 58.0 0.24
mm4_intergenic_Gm13667|4930441J16Rik_chr2_74284619_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Gm13667|4930441J16Rik_chr2_74284619_R Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Arid1b|Tmem242_chr17_5407606_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Arid1b|Tmem242_chr17_5407606_R Primer3: not found at this Tm N.d. 0.24
mm4_intron_Acap2_chr16_31193269_F Primer3: not found at this Tm N.d. 0.23
mm4_intron_Acap2_chr16_31193269_R Primer3: not found at this Tm N.d. 0.23
mm4_intergenic_Fau-ps1|Macrod2_chr2_141990996_F TCGTCGGCAGCGTCATGCTCACTCACTGCATCCC 60.1 0.23
mm4_intergenic_Fau-ps1|Macrod2_chr2_141990996_R GTCTCGTGGGCTCGGCACCCCAAGAGGCACACTAT 59.3 0.23
mm3_exon_Gm7869_chr8_21709649_F Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm7869_chr8_21709649_R Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm2869_chr8_21102277_F Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm2869_chr8_21102277_R Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm15314_chr8_21600530_F Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm15314_chr8_21600530_R Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm15304_chr8_21462583_F Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm15304_chr8_21462583_R Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm15303_chr8_21238299_F Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm15303_chr8_21238299_R Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm15302_chr8_21332574_F Primer3: not found at this Tm N.d. 0.22
mm3_exon_Gm15302_chr8_21332574_R Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm2373|5330416C01Rik_chr13_97669064_F TCGTCGGCAGCGTCGCAGAGAGGAGCCAGGATTC 59.8 0.21
mm4_intergenic_Gm2373|5330416C01Rik_chr13_97669064_R GTCTCGTGGGCTCGGTCGCCCTAATTCAGCAAGCA 60.0 0.21
mm4_intergenic_Gm23735|Fndc3a_chr14_72293762_F TCGTCGGCAGCGTCGGTCACACCTGGGCACATTA 59.9 0.21
mm4_intergenic_Gm23735|Fndc3a_chr14_72293762_R GTCTCGTGGGCTCGGAGCAGATGTCGACATTGCCA 60.0 0.21
mm4_intron_Sin3a_chr9_57077134_F TCGTCGGCAGCGTCTGTGATGCCACGCCCCTC 62.4 0.21
mm4_intron_Sin3a_chr9_57077134_R GTCTCGTGGGCTCGGGAGGAGCAGACACGGAGC 59.8 0.21
mm4_intergenic_Rab8b|Rps27l_chr9_66933899_F TCGTCGGCAGCGTCTCAGGCAGTTCAAGGTCCAC 59.8 0.21
mm4_intergenic_Rab8b|Rps27l_chr9_66933899_R GTCTCGTGGGCTCGGTCCTGATTTGCCGAGAAGAGG 59.7 0.21
mm4_intergenic_Fgf10|Nnt_chr13_119038156_F Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Fgf10|Nnt_chr13_119038156_R Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Gm23892|Gm25382_chr10_17058783_F Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Gm23892|Gm25382_chr10_17058783_R Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_4930428D18Rik|Gm5793_chrX_76426096_F Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_4930428D18Rik|Gm5793_chrX_76426096_R Primer3: not found at this Tm N.d. 0.20
mm4_intron_Pmel_chr10_128710924_F Primer3: not found at this Tm N.d. 0.20
mm4_intron_Pmel_chr10_128710924_R Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Gm3968|Gm3977_chr7_15132785_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm3968|Gm3977_chr7_15132785_R Primer3: not found at this Tm N.d. 0.19
mm3_intergenic_Gm20665|Gm20664_chr7_14771346_F Primer3: not found at this Tm N.d. 0.19
mm3_intergenic_Gm20665|Gm20664_chr7_14771346_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm13317|Plxdc2_chr2_16314038_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm13317|Plxdc2_chr2_16314038_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Synpo|Ndst1_chr18_60669981_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Synpo|Ndst1_chr18_60669981_R Primer3: not found at this Tm N.d. 0.19
mm3_intron_Ppap2b_chr4_105194275_F Primer3: not found at this Tm N.d. 0.19
mm3_intron_Ppap2b_chr4_105194275_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm26119|Fzd8_chr18_9180991_F Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_Gm26119|Fzd8_chr18_9180991_R Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_B930078G14Rik|Fam155a_chr8_8988822_F Primer3: not found at this Tm N.d. 0.17
mm4_intergenic_B930078G14Rik|Fam155a_chr8_8988822_R Primer3: not found at this Tm N.d. 0.17
mm4_intergenic_Tmem126b|Dlg2_chr7_90786429_F TCGTCGGCAGCGTCTCCACTTGGAAGACAGTTCTGG 59.8 0.17
mm4_intergenic_Tmem126b|Dlg2_chr7_90786429_R GTCTCGTGGGCTCGGGTGAATTCTCACCTGCTTCTCA 58.3 0.17
mm4_intron_Spock1_chr13_57879847_F Primer3: not found at this Tm N.d. 0.17
mm4_intron_Spock1_chr13_57879847_R Primer3: not found at this Tm N.d. 0.17
mm4_intron_Stx17_chr4_48130475_F TCGTCGGCAGCGTCTTGGAGTTCTGTTGCTGGTT 57.5 0.16
mm4_intron_Stx17_chr4_48130475_R GTCTCGTGGGCTCGGGAACTCCTCTCACGGAAGGC 60.1 0.16
mm4_exon_Sult2b1_chr7_45758889_F Primer3: not found at this Tm N.d. 0.16
mm4_exon_Sult2b1_chr7_45758889_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Tmem29|3110067C02Rik_chrX_150459269_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Tmem29|3110067C02Rik_chrX_150459269_R Primer3: not found at this Tm N.d. 0.16
mm4_intron_Gm15046_chrX_140184943_F Primer3: not found at this Tm N.d. 0.16
mm4_intron_Gm15046_chrX_140184943_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm13726|4930440I19Rik_chr2_77991656_F TCGTCGGCAGCGTCAAATATGAAGTGAAAGGAAGGCC 57.0 0.16
mm4_intergenic_Gm13726|4930440I19Rik_chr2_77991656_R GTCTCGTGGGCTCGGTGCAGTGTTACCTTTCTGGGG 60.2 0.16
mm4_intergenic_Gm2568|Foxa1_chr12_57523960_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm2568|Foxa1_chr12_57523960_R Primer3: not found at this Tm N.d. 0.16
mm3_intron_Rab3c_chr13_110213365_F Primer3: not found at this Tm N.d. 0.16
mm3_intron_Rab3c_chr13_110213365_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Ola1|Sp9_chr2_73265496_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Ola1|Sp9_chr2_73265496_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm23538|1700110M21Rik_chr14_101030414_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm23538|1700110M21Rik_chr14_101030414_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm22913|Gm20091_chr10_96274608_F TCGTCGGCAGCGTCGGGTTGCTTCTTAGATACCACCA 60.0 0.15
mm4_intergenic_Gm22913|Gm20091_chr10_96274608_R GTCTCGTGGGCTCGGTCAGACTCTCCCTGGCAAAC 59.3 0.15
mm4_intergenic_Zdhhc17|Gm5428_chr10_111074014_F TCGTCGGCAGCGTCCACCTGGCATTCCCATCTGA 59.7 0.15
mm4_intergenic_Zdhhc17|Gm5428_chr10_111074014_R GTCTCGTGGGCTCGGGCTCCTGCCAGACACAAAGA 60.2 0.15
mm4_intergenic_Gm26235|Gm25392_chr18_19547593_F TCGTCGGCAGCGTCTCCTTGGAAAACTCTAAAGCAGA 57.6 0.15
mm4_intergenic_Gm26235|Gm25392_chr18_19547593_R GTCTCGTGGGCTCGGAGGGCTGATTTTAAAAGCTTGTT 57.4 0.15
mm3_intergenic_Gm7816|Gm2810_chr5_39865710_F Primer3: not found at this Tm N.d. 0.15
mm3_intergenic_Gm7816|Gm2810_chr5_39865710_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Cyp2c55/Gm23800|Cyp2c55_chr19_39010212_F Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Cyp2c55/Gm23800|Cyp2c55_chr19_39010212_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Tnrc18|Gm15770_chr5_142848508_F Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Tnrc18|Gm15770_chr5_142848508_R Primer3: not found at this Tm N.d. 0.15
mm3_intergenic_AC107236.1|Gm8623_chr8_47613097_F TCGTCGGCAGCGTCTACACGCATACCTGGCAGAG 59.5 0.14
mm3_intergenic_AC107236.1|Gm8623_chr8_47613097_R GTCTCGTGGGCTCGGTGTCCCACACTCAGCACATC 59.9 0.14
mm4_intron_Apol7e_chr15_77707450_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Apol7e_chr15_77707450_R Primer3: not found at this Tm N.d. 0.14
mm3_intergenic_Gm26341|Amd2_chr10_35630882_F Primer3: not found at this Tm N.d. 0.14
mm3_intergenic_Gm26341|Amd2_chr10_35630882_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Gm24817|Apcs_chr1_172860126_F TCGTCGGCAGCGTCAGGGAAAAGCTACCAAGGCA 59.2 0.14
mm4_intergenic_Gm24817|Apcs_chr1_172860126_R GTCTCGTGGGCTCGGGGCTAGACCCTCATCAGCTG 59.6 0.14
mm3_intergenic_1110051M20Rik|Gm13787_chr2_91325255_F TCGTCGGCAGCGTCCAGAGACAGGCCAGATGGAC 59.8 0.14
mm3_intergenic_1110051M20Rik|Gm13787_chr2_91325255_R GTCTCGTGGGCTCGGGGCATGTTCTGAGCCCTCTT 60.0 0.14
mm4_intron_Mamdc2_chr19_23375692_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Mamdc2_chr19_23375692_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Rragd_chr4_32991805_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Rragd_chr4_32991805_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Pdilt|Gm26967_chr7_119501888_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Pdilt|Gm26967_chr7_119501888_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Fam154a|Gm26017_chr4_86507059_F TCGTCGGCAGCGTCATGGCTTTCTCCACACACCC 60.2 0.14
mm4_intergenic_Fam154a|Gm26017_chr4_86507059_R GTCTCGTGGGCTCGGGGCTGGTCAGAGAAAAGGCA 60.2 0.14
mm3_intron_Celsr1_chr15_86005571_F TCGTCGGCAGCGTCAACCTCCCTACTGCCTTTAAAA 57.2 0.13
mm3_intron_Celsr1_chr15_86005571_R GTCTCGTGGGCTCGGCAGCTTGACCATAATCATGCCA 59.0 0.13
mm4_intergenic_Gm14936|Gm14939_chrX_113020900_F Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Gm14936|Gm14939_chrX_113020900_R Primer3: not found at this Tm N.d. 0.13
mm4_intron_Sema6d_chr2_124550481_F Primer3: not found at this Tm N.d. 0.13
mm4_intron_Sema6d_chr2_124550481_R Primer3: not found at this Tm N.d. 0.13
mm4_intron_Myo18b_chr5_112729087_F Primer3: not found at this Tm N.d. 0.13
mm4_intron_Myo18b_chr5_112729087_R Primer3: not found at this Tm N.d. 0.13
mm4_intron_Ctnnd2_chr15_30362102_F Primer3: not found at this Tm N.d. 0.13
mm4_intron_Ctnnd2_chr15_30362102_R Primer3: not found at this Tm N.d. 0.13
mm2_intergenic_Gm13912|Gm13916_chr2_108363859_F Primer3: not found at this Tm N.d. 0.12
mm2_intergenic_Gm13912|Gm13916_chr2_108363859_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm10479|1700030C10Rik_chr12_20467196_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm10479|1700030C10Rik_chr12_20467196_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_5730507C01Rik|Gm3944_chr12_18570038_F TCGTCGGCAGCGTCAACTTCCATGGGAGCAGGTG 59.9 0.12
mm4_intergenic_5730507C01Rik|Gm3944_chr12_18570038_R GTCTCGTGGGCTCGGTTGTGTGACTTGTGGGCTCA 59.7 0.12
mm4_intergenic_Gm4897|RP24-84K14.11_chr7_15268555_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm4897|RP24-84K14.11_chr7_15268555_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm4014|Obox3_chr7_15458935_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm4014|Obox3_chr7_15458935_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm4003|Gm4897_chr7_15257224_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm4003|Gm4897_chr7_15257224_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm4001|Gm4003_chr7_15245898_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm4001|Gm4003_chr7_15245898_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3998|Gm4001_chr7_15234557_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3998|Gm4001_chr7_15234557_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3996|Gm3998_chr7_15223253_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3996|Gm3998_chr7_15223253_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3994|Gm3996_chr7_15211923_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3994|Gm3996_chr7_15211923_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3989|Gm3994_chr7_15200584_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3989|Gm3994_chr7_15200584_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3987|Gm3989_chr7_15189279_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3987|Gm3989_chr7_15189279_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3984|Gm3987_chr7_15177938_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3984|Gm3987_chr7_15177938_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3981|Gm3984_chr7_15166857_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3981|Gm3984_chr7_15166857_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3980|Gm3981_chr7_15155527_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3980|Gm3981_chr7_15155527_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3977|Gm3980_chr7_15144159_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3977|Gm3980_chr7_15144159_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm10678|Gm4014_chr7_15447611_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm10678|Gm4014_chr7_15447611_R Primer3: not found at this Tm N.d. 0.12
mm3_intergenic_Kif6|Gm16555_chr17_49809136_F Primer3: not found at this Tm N.d. 0.12
mm3_intergenic_Kif6|Gm16555_chr17_49809136_R Primer3: not found at this Tm N.d. 0.12
mm4_intron_Gm26861_chr13_10614433_F TCGTCGGCAGCGTCAGGAGGGAATGGTAGACGGA 59.3 0.12
mm4_intron_Gm26861_chr13_10614433_R GTCTCGTGGGCTCGGCACTGAGCTTAGGGAACAGCA 59.9 0.12
mm4_intron_Nckap5_chr1_126750242_F Primer3: not found at this Tm N.d. 0.12
mm4_intron_Nckap5_chr1_126750242_R Primer3: not found at this Tm N.d. 0.12
mm4_intron_2700097O09Rik_chr12_55052262_F Primer3: not found at this Tm N.d. 0.12
mm4_intron_2700097O09Rik_chr12_55052262_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm22977|Zpld1_chr16_55001620_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm22977|Zpld1_chr16_55001620_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_AC154801.1|BC040587_chr16_40708803_F TCGTCGGCAGCGTCCCCTGACGTTTGGTGTCTCA 59.8 0.12
mm4_intergenic_AC154801.1|BC040587_chr16_40708803_R GTCTCGTGGGCTCGGGTCTCCATGAGCATTAAGAAAGGC 59.9 0.12
mm4_intergenic_Neto1|Cbln2_chr18_86534347_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Neto1|Cbln2_chr18_86534347_R Primer3: not found at this Tm N.d. 0.12
mm3_intron_Elavl4_chr4_110309979_F Primer3: not found at this Tm N.d. 0.12
mm3_intron_Elavl4_chr4_110309979_R Primer3: not found at this Tm N.d. 0.12
mm4_intron_Gm20474_chr12_23554773_F Primer3: not found at this Tm N.d. 0.12
mm4_intron_Gm20474_chr12_23554773_R Primer3: not found at this Tm N.d. 0.12
mm4_intron_Gm10476_chr12_22395750_F Primer3: not found at this Tm N.d. 0.12
mm4_intron_Gm10476_chr12_22395750_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Hpcal1|B430203G13Rik_chr12_17854631_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Hpcal1|B430203G13Rik_chr12_17854631_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm9312|Gm16372_chr12_24297911_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm9312|Gm16372_chr12_24297911_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm9257|Gm22189_chr12_19807293_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm9257|Gm22189_chr12_19807293_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm5633|Gm22908_chr12_21823583_F TCGTCGGCAGCGTCTAGCTCACATCACACCGGTC 59.4 0.12
mm4_intergenic_Gm5633|Gm22908_chr12_21823583_R GTCTCGTGGGCTCGGAAGAGGCCTGGAGCAACTTC 59.9 0.12
mm4_intergenic_Gm3993|Gm10479_chr12_20380336_F TCGTCGGCAGCGTCAAGAGGCCTGGAGCAACTTC 59.9 0.12
mm4_intergenic_Gm3993|Gm10479_chr12_20380336_R GTCTCGTGGGCTCGGTAGCTCACATCACACCGGTC 59.4 0.12
mm4_intergenic_Gm3944|Gm5784_chr12_18925080_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm3944|Gm5784_chr12_18925080_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm21863|Gm3993_chr12_20013318_F TCGTCGGCAGCGTCAACTTCCAAGGGAGCAGGTG 59.8 0.12
mm4_intergenic_Gm21863|Gm3993_chr12_20013318_R GTCTCGTGGGCTCGGTGTTGTGTGACTTGTGGGCT 60.0 0.12
mm4_intergenic_Gm20474|Gm10330_chr12_23706154_F TCGTCGGCAGCGTCTTGTGTGACTTGTGGGCTCA 59.7 0.12
mm4_intergenic_Gm20474|Gm10330_chr12_23706154_R GTCTCGTGGGCTCGGGGAGCAGGTGGACATGTGAT 59.7 0.12
mm4_intergenic_Gm17391|2410018L13Rik_chr12_22949817_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm17391|2410018L13Rik_chr12_22949817_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm10476|Gm17391_chr12_22531111_F TCGTCGGCAGCGTCTTGTGTGACTTGTGGGCTCA 59.7 0.12
mm4_intergenic_Gm10476|Gm17391_chr12_22531111_R GTCTCGTGGGCTCGGGTGGCCATGTGATAGGGGAG 59.8 0.12
mm4_intergenic_Gm10330|Gm17330_chr12_23874828_F TCGTCGGCAGCGTCTTGTGTGACTTGTGGGCTCA 59.7 0.12
mm4_intergenic_Gm10330|Gm17330_chr12_23874828_R GTCTCGTGGGCTCGGGGAGCAGGTGGACATGTGAT 59.7 0.12
mm4_intergenic_2410018L13Rik|Gm26140_chr12_23085391_F TCGTCGGCAGCGTCAGGTCACACGTGTCCTAGTT 58.2 0.12
mm4_intergenic_2410018L13Rik|Gm26140_chr12_23085391_R GTCTCGTGGGCTCGGGTGGCCATGTGATAGGGGAG 59.8 0.12
mm4_intron_Dlgap2_chr8_14775581_F Primer3: not found at this Tm N.d. 0.11
mm4_intron_Dlgap2_chr8_14775581_R Primer3: not found at this Tm N.d. 0.11
mm4_intron_Aldh1l1_chr6_90582058_F Primer3: not found at this Tm N.d. 0.11
mm4_intron_Aldh1l1_chr6_90582058_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gja5|Gm24435_chr3_97111439_F TCGTCGGCAGCGTCCCACCCAGACTGCATTCTGT 59.9 0.11
mm4_intergenic_Gja5|Gm24435_chr3_97111439_R GTCTCGTGGGCTCGGAGGCACACAGCTGTTGTTCA 60.3 0.11
mm4_intergenic_Gm24670|Etl4_chr2_19693314_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm24670|Etl4_chr2_19693314_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm12596|Susd1_chr4_59267493_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm12596|Susd1_chr4_59267493_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm14980|Pcdh19_chrX_133451984_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm14980|Pcdh19_chrX_133451984_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Krt13|Krt15_chr11_100122018_F TCGTCGGCAGCGTCGGCTGGATGGAATGTTCTGGA 60.0 0.11
mm4_intergenic_Krt13|Krt15_chr11_100122018_R GTCTCGTGGGCTCGGTTCAGGCTCAAGGTGTCCAA 59.1 0.11
mm4_intergenic_Tlr2|D930015E06Rik_chr3_83883699_F TCGTCGGCAGCGTCAATGGGGTTGGAAGTTGGCA 60.1 0.11
mm4_intergenic_Tlr2|D930015E06Rik_chr3_83883699_R GTCTCGTGGGCTCGGGTCCACTCTCCCTCCTGTGA 60.2 0.11
mm4_intergenic_Gm5449|Drd1a_chr13_53590279_F TCGTCGGCAGCGTCACTCCATAGCAAGGTTGGGG 59.3 0.11
mm4_intergenic_Gm5449|Drd1a_chr13_53590279_R GTCTCGTGGGCTCGGCACCCTGCATCCCTTTGCTA 60.0 0.11
mm4_intron_Gabrg3_chr7_56767259_F TCGTCGGCAGCGTCGAGGTAGCCACAAACAGCCT 59.9 0.11
mm4_intron_Gabrg3_chr7_56767259_R GTCTCGTGGGCTCGGTGTTGAAAGTGTAACCTGGGT 57.3 0.11
mm4_intron_Tyw1_chr5_130262636_F Primer3: not found at this Tm N.d. 0.11
mm4_intron_Tyw1_chr5_130262636_R Primer3: not found at this Tm N.d. 0.11
mm4_intron_Gm26531_chr12_85973378_F Primer3: not found at this Tm N.d. 0.11
mm4_intron_Gm26531_chr12_85973378_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm11997|Vwc2_chr11_10386935_F TCGTCGGCAGCGTCTCAACCAGAATAGAGCCTAAAAGT 57.6 0.10
mm4_intergenic_Gm11997|Vwc2_chr11_10386935_R GTCTCGTGGGCTCGGTCTCAATAGGCATTCAGGTCC 57.1 0.10
mm4_intron_Sh3pxd2a_chr19_47332457_F Primer3: not found at this Tm N.d. 0.10
mm4_intron_Sh3pxd2a_chr19_47332457_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm11231|Gm11232_chr4_71755069_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm11231|Gm11232_chr4_71755069_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Rps2-ps6|Tsc22d1_chr14_76240043_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Rps2-ps6|Tsc22d1_chr14_76240043_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm26173|Tbc1d4_chr14_101311959_F TCGTCGGCAGCGTCGACCCACACACCCACTTCTC 60.2 0.10
mm4_intergenic_Gm26173|Tbc1d4_chr14_101311959_R GTCTCGTGGGCTCGGACAATTGGCTGGAGTGAGGG 59.9 0.10
mm4_intergenic_Gm9923|Gm24984_chr10_72506575_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm9923|Gm24984_chr10_72506575_R Primer3: not found at this Tm N.d. 0.10
mm3_intron_Wnt3a_chr11_59287204_F TCGTCGGCAGCGTCGGGCTGCAGAGAAGAGTGAG 60.1 0.10
mm3_intron_Wnt3a_chr11_59287204_R GTCTCGTGGGCTCGGTGTGCTGTGTGTGTCCCAG 60.1 0.10
mm4_intron_Zfp11_chr5_129660060_F Primer3: not found at this Tm N.d. 0.10
mm4_intron_Zfp11_chr5_129660060_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gfra4|Adam33_chr2_131044679_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gfra4|Adam33_chr2_131044679_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_AC158942.1|5031425E22Rik_chr5_23293586_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_AC158942.1|5031425E22Rik_chr5_23293586_R Primer3: not found at this Tm N.d. 0.10
mm3_intron_Gm973_chr1_59575527_F Primer3: not found at this Tm N.d. 0.10
mm3_intron_Gm973_chr1_59575527_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Golga5|Chga_chr12_102525057_F TCGTCGGCAGCGTCAGCAGAGCCTATCCTTTGGG 59.1 0.10
mm4_intergenic_Golga5|Chga_chr12_102525057_R GTCTCGTGGGCTCGGTGCCCCAAACCAACTCTCTC 59.8 0.10
mm4_intergenic_CT030233.1|Gm20675_chr14_67089200_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_CT030233.1|Gm20675_chr14_67089200_R Primer3: not found at this Tm N.d. 0.09
mm4_intron_Dpp6_chr5_27210193_F TCGTCGGCAGCGTCACACACTGTGTTCAAAGGATTCA 58.7 0.09
mm4_intron_Dpp6_chr5_27210193_R GTCTCGTGGGCTCGGGTCCACAGTGCCTGGTACTC 60.0 0.09
mm4_intergenic_Gm6245|Gcnt2_chr13_40851571_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm6245|Gcnt2_chr13_40851571_R Primer3: not found at this Tm N.d. 0.09
mm4_intron_Usp12_chr5_146777591_F Primer3: not found at this Tm N.d. 0.09
mm4_intron_Usp12_chr5_146777591_R Primer3: not found at this Tm N.d. 0.09
mm3_intron_Gria1_chr11_57268218_F TCGTCGGCAGCGTCCTTAGAGCTCCTCGTCCCCT 60.1 0.09
mm3_intron_Gria1_chr11_57268218_R GTCTCGTGGGCTCGGCCAGCACATCCAGAGACACA 59.6 0.09
mm4_intergenic_Gm5976|Tmem194b_chr1_52581927_F TCGTCGGCAGCGTCCTGTGGCTGGTGAGGGTAAG 60.0 0.09
mm4_intergenic_Gm5976|Tmem194b_chr1_52581927_R GTCTCGTGGGCTCGGCAAACCCACTCTCCTCAGCC 60.3 0.09
mm3_intron_Gpc6_chr14_116976957_F Primer3: not found at this Tm N.d. 0.09
mm3_intron_Gpc6_chr14_116976957_R Primer3: not found at this Tm N.d. 0.09
mm4_intron_Cntnap3_chr13_64889787_F Primer3: not found at this Tm N.d. 0.09
mm4_intron_Cntnap3_chr13_64889787_R Primer3: not found at this Tm N.d. 0.09
mm4_intron_Rimklb_chr6_122472906_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Rimklb_chr6_122472906_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Slc38a5|Ssxb10_chrX_8294294_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Slc38a5|Ssxb10_chrX_8294294_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Gbf1_chr19_46260397_F TCGTCGGCAGCGTCTGCTGACCAGAAAACCTACAGT 59.5 0.08
mm4_intron_Gbf1_chr19_46260397_R GTCTCGTGGGCTCGGCATCCTGCAAAAGTCGCCAC 60.1 0.08
mm4_intergenic_Gm14243|Gm5270_chr2_161244091_F TCGTCGGCAGCGTCGGCTAACCTGAGGCTGACAG 60.1 0.08
mm4_intergenic_Gm14243|Gm5270_chr2_161244091_R GTCTCGTGGGCTCGGGCTCCCATGAAGTCAGCCTT 60.0 0.08
mm4_intron_Nsmce2_chr15_59560928_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Nsmce2_chr15_59560928_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Rnf128_chrX_139586631_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Rnf128_chrX_139586631_R Primer3: not found at this Tm N.d. 0.08
mm3_intron_Prkag2_chr5_25038886_F TCGTCGGCAGCGTCGCCCATCAGCTGGTAGAACA 59.7 0.08
mm3_intron_Prkag2_chr5_25038886_R GTCTCGTGGGCTCGGGACAGACAACCTGAGGCCTC 60.0 0.08
mm4_intergenic_3100002H09Rik|RP23-230F2.8_chr4_124627493_F TCGTCGGCAGCGTCAGACACAGATATAAATGCAGGCA 57.9 0.08
mm4_intergenic_3100002H09Rik|RP23-230F2.8_chr4_124627493_R GTCTCGTGGGCTCGGCTCTGGAGGTCACTCTGTGC 59.7 0.08
mm4_intron_Lef1_chr3_131118303_F TCGTCGGCAGCGTCGAGATTCCAGCTGTGGCCAA 60.3 0.08
mm4_intron_Lef1_chr3_131118303_R GTCTCGTGGGCTCGGGGCAAAGGCAGTTCTCCTGA 60.2 0.08
mm4_intergenic_Olfr885|Olfr887_chr9_38070191_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Olfr885|Olfr887_chr9_38070191_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Eed/Gm26529|Gm5341_chr7_89984812_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Eed/Gm26529|Gm5341_chr7_89984812_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Fam53b_chr7_132799723_F TCGTCGGCAGCGTCGTTCCTGACACAGCTCAGCT 59.9 0.08
mm4_intron_Fam53b_chr7_132799723_R GTCTCGTGGGCTCGGGCACTAACCACCCTCTGACC 60.0 0.08
mm4_intergenic_Sema6a|Gm5506_chr18_47713419_F TCGTCGGCAGCGTCTGGAAGTTACAAAGGAATGGGGA 59.6 0.08
mm4_intergenic_Sema6a|Gm5506_chr18_47713419_R GTCTCGTGGGCTCGGCTCACCCCTGACCCCATTTC 60.0 0.08
mm4_intron_Gna14_chr19_16470515_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Gna14_chr19_16470515_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Tmtc4_chr14_122949808_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Tmtc4_chr14_122949808_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Fam71f1_chr6_29319729_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Fam71f1_chr6_29319729_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Agtr1b|Gm7488_chr3_20977288_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Agtr1b|Gm7488_chr3_20977288_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Smoc2|Thbs2_chr17_14492423_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Smoc2|Thbs2_chr17_14492423_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Areg|Gm23092_chr5_91169079_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Areg|Gm23092_chr5_91169079_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm12450|Spag17_chr3_99876951_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm12450|Spag17_chr3_99876951_R Primer3: not found at this Tm N.d. 0.07
mm3_intergenic_Scgb2b12|Scgb1b29_chr7_32428599_F Primer3: not found at this Tm N.d. 0.07
mm3_intergenic_Scgb2b12|Scgb1b29_chr7_32428599_R Primer3: not found at this Tm N.d. 0.07
mm3_intergenic_Scgb1b3|Scgb2b7_chr7_31692032_F Primer3: not found at this Tm N.d. 0.07
mm3_intergenic_Scgb1b3|Scgb2b7_chr7_31692032_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Nell1|Ano5_chr7_51390745_F TCGTCGGCAGCGTCATATCTTGGTGGTTAGCTCCTTT 57.2 0.07
mm4_intergenic_Nell1|Ano5_chr7_51390745_R GTCTCGTGGGCTCGGGCTCCCACTGTGATACTTCCA 59.4 0.07
mm4_intron_Dcc_chr18_71606376_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Dcc_chr18_71606376_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm11680|BC006965_chr11_112253032_F TCGTCGGCAGCGTCGACCCAGAGGAACAAAGGCA 59.8 0.07
mm4_intergenic_Gm11680|BC006965_chr11_112253032_R GTCTCGTGGGCTCGGTCCCTAGTCTGAGTGCCCAA 59.8 0.07
mm4_intron_Nol4_chr18_22898453_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Nol4_chr18_22898453_R Primer3: not found at this Tm N.d. 0.07
mm4_exon_Aurkb_chr11_69047988_F Primer3: not found at this Tm N.d. 0.07
mm4_exon_Aurkb_chr11_69047988_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Tbc1d22a|Gm23416_chr15_86725713_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Tbc1d22a|Gm23416_chr15_86725713_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Atg5|Prdm1_chr10_44367291_F TCGTCGGCAGCGTCTTCAGCCTCCCTTTGAGCAG 59.9 0.06
mm4_intergenic_Atg5|Prdm1_chr10_44367291_R GTCTCGTGGGCTCGGCTTTTCAGACGCAACGCCTC 60.1 0.06
mm4_intergenic_Ano6|D030018L15Rik_chr15_96044457_F TCGTCGGCAGCGTCGAGCAATGGAGGTGGAACCA 59.9 0.06
mm4_intergenic_Ano6|D030018L15Rik_chr15_96044457_R GTCTCGTGGGCTCGGACACAGTTAATACACCCATTCCCA 59.9 0.06
mm4_intergenic_Unc13c|n-R5s86_chr9_73969693_F TCGTCGGCAGCGTCGGCTGAGAATTGAATGGGGC 59.2 0.06
mm4_intergenic_Unc13c|n-R5s86_chr9_73969693_R GTCTCGTGGGCTCGGTGTTTCAACAGGAGGGTTAGAGG 59.9 0.06
mm4_intergenic_Gm25096|Gm25634_chr1_35407301_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm25096|Gm25634_chr1_35407301_R Primer3: not found at this Tm N.d. 0.06
mm3_intergenic_Gm26002|Itgb1_chr8_128674560_F Primer3: not found at this Tm N.d. 0.06
mm3_intergenic_Gm26002|Itgb1_chr8_128674560_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Mug1_chr6_121881422_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Mug1_chr6_121881422_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Mug1|Mug2_chr6_121949159_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Mug1|Mug2_chr6_121949159_R Primer3: not found at this Tm N.d. 0.06
mm3_intergenic_March11|Fbxl7_chr15_26430809_F Primer3: not found at this Tm N.d. 0.06
mm3_intergenic_March11|Fbxl7_chr15_26430809_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm13203|Casz1_chr4_148793778_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm13203|Casz1_chr4_148793778_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Cgnl1_chr9_71759494_F TCGTCGGCAGCGTCCTAGCCAGGGTCTTCCTTGC 60.1 0.06
mm4_intron_Cgnl1_chr9_71759494_R GTCTCGTGGGCTCGGTCTGCTGTACCTGAGCAACC 59.6 0.06
mm4_intergenic_Adra1b|Gm12153_chr11_43930079_F TCGTCGGCAGCGTCACTCCCTTCTGTTTCCAGGG 58.9 0.06
mm4_intergenic_Adra1b|Gm12153_chr11_43930079_R GTCTCGTGGGCTCGGTCCTGGGATTGGGCTACTGA 59.9 0.06
mm4_intergenic_Gm23539|Gm24184_chr8_31606408_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm23539|Gm24184_chr8_31606408_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Asah2_chr19_32061214_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Asah2_chr19_32061214_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gm24503|Ccrn4l_chr3_50942322_F TCGTCGGCAGCGTCGGATCAGAACCAGCAGAGCA 59.7 0.06
mm4_intergenic_Gm24503|Ccrn4l_chr3_50942322_R GTCTCGTGGGCTCGGTGGATGGAGTAGCAGCTGGA 60.3 0.06
mm3_intron_Stard8_chrX_99052739_F TCGTCGGCAGCGTCCGAGCCTCAGGTAGGATGC 59.6 0.06
mm3_intron_Stard8_chrX_99052739_R GTCTCGTGGGCTCGGTGGTGCTCTCAATGCAGTGT 59.8 0.06
mm4_intron_Aars_chr8_111052087_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Aars_chr8_111052087_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm9162|Scgb2b19_chr7_33266732_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm9162|Scgb2b19_chr7_33266732_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm9135|Scgb2b12_chr7_32313702_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm9135|Scgb2b12_chr7_32313702_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Csmd3_chr15_47951349_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Csmd3_chr15_47951349_R Primer3: not found at this Tm N.d. 0.05
mm3_exon_Cacna1b_chr2_24605737_F TCGTCGGCAGCGTCTCATCCACGATGCTCAGAGC 59.8 0.05
mm3_exon_Cacna1b_chr2_24605737_R GTCTCGTGGGCTCGGTGTATGTTTCTACCCTGCCTGG 59.7 0.05
mm4_intron_Fbln1_chr15_85266104_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Fbln1_chr15_85266104_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Scgb2b17|Gm9162_chr7_33108318_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Scgb2b17|Gm9162_chr7_33108318_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Scgb2b12|Scgb1b29_chr7_32400970_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Scgb2b12|Scgb1b29_chr7_32400970_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm9167|Scgb2b20_chr7_33352450_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm9167|Scgb2b20_chr7_33352450_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm5329|Gm9135_chr7_32142892_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm5329|Gm9135_chr7_32142892_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm5329|Gm9135_chr7_32087121_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm5329|Gm9135_chr7_32087121_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm4398|Scgb2b15_chr7_32822811_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm4398|Scgb2b15_chr7_32822811_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm25817|Scgb2b17_chr7_33049714_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm25817|Scgb2b17_chr7_33049714_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Kcnmb2_chr3_31945243_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Kcnmb2_chr3_31945243_R Primer3: not found at this Tm N.d. 0.05
mm3_intergenic_9330198N18Rik|Gm14486_chr2_30656704_F Primer3: not found at this Tm N.d. 0.05
mm3_intergenic_9330198N18Rik|Gm14486_chr2_30656704_R Primer3: not found at this Tm N.d. 0.05
mm4_exon_9130213A22Rik/Hes7_chr11_69121092_F TCGTCGGCAGCGTCTTGAGTCGTTGGTTCCGGAG 59.9 0.05
mm4_exon_9130213A22Rik/Hes7_chr11_69121092_R GTCTCGTGGGCTCGGCGCGCGATAGAGACCTAAGG 60.1 0.05
mm4_intergenic_Gm12159|Gm12160_chr11_45138607_F TCGTCGGCAGCGTCTAAAGTGATGGGGAGCTGGC 59.7 0.05
mm4_intergenic_Gm12159|Gm12160_chr11_45138607_R GTCTCGTGGGCTCGGTAATGTGGAGGTTGTCGCCC 60.0 0.05
mm4_intergenic_Gm13044|Gm13041_chr4_143496426_F TCGTCGGCAGCGTCGGGTGGAGACTTCATCATTCCA 59.7 0.05
mm4_intergenic_Gm13044|Gm13041_chr4_143496426_R GTCTCGTGGGCTCGGAGGCTCAGAGTGTCTTGTGC 59.9 0.05
mm4_intron_Mtus1_chr8_41107779_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Mtus1_chr8_41107779_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Bmp7_chr2_172894007_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Bmp7_chr2_172894007_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Map4k3_chr17_80597739_F TCGTCGGCAGCGTCGAGTGGACACGGCATAGGAA 59.4 0.05
mm4_intron_Map4k3_chr17_80597739_R GTCTCGTGGGCTCGGTGAGAGCAGAAGCCTCTCCT 59.9 0.05
mm4_intron_Tmem182_chr1_40846922_F TCGTCGGCAGCGTCAGCAACCATCAAGAGCTCTGA 59.3 0.05
mm4_intron_Tmem182_chr1_40846922_R GTCTCGTGGGCTCGGTGGCAGGAGCTGAATAACCA 59.0 0.05
mm4_intergenic_Plb1|Gm5864_chr5_32403617_F TCGTCGGCAGCGTCAGGGGAATGAGAGCTAAAGGG 58.8 0.05
mm4_intergenic_Plb1|Gm5864_chr5_32403617_R GTCTCGTGGGCTCGGCCAGCCCCTGACAACTGATG 60.6 0.05
mm3_intron_Pepd_chr7_34985408_F Primer3: not found at this Tm N.d. 0.04
mm3_intron_Pepd_chr7_34985408_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm10679|Gm10678_chr7_15436275_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm10679|Gm10678_chr7_15436275_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Slc39a12_chr2_14440929_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Slc39a12_chr2_14440929_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Slc39a12_chr2_14416396_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Slc39a12_chr2_14416396_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Morc2b|Olfr55_chr17_33141257_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Morc2b|Olfr55_chr17_33141257_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Kat6a_chr8_22860281_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Kat6a_chr8_22860281_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Mir124a-3/Gm27032|Ythdf1_chr2_180897609_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Mir124a-3/Gm27032|Ythdf1_chr2_180897609_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Rab11fip1|Got1l1_chr8_27178554_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Rab11fip1|Got1l1_chr8_27178554_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm4906|Gm14515_chrX_11599813_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm4906|Gm14515_chrX_11599813_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm24443|Gm22529_chr6_25092213_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm24443|Gm22529_chr6_25092213_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Slc7a1|Ubl3_chr5_148424343_F TCGTCGGCAGCGTCTTCAGCAATCTGTAAACTCATGG 57.1 0.04
mm4_intergenic_Slc7a1|Ubl3_chr5_148424343_R GTCTCGTGGGCTCGGGACCACCACCACCAGCAATA 59.9 0.04
mm4_intron_Mylip_chr13_45400816_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Mylip_chr13_45400816_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Tmprss11a_chr5_86458012_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Tmprss11a_chr5_86458012_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Tbkbp1_chr11_97148916_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Tbkbp1_chr11_97148916_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Clstn2_chr9_97738135_F TCGTCGGCAGCGTCCCCCTTCACCCCTTCAACAT 59.5 0.04
mm4_intron_Clstn2_chr9_97738135_R GTCTCGTGGGCTCGGTGCTGACACACATCATAGAGG 57.4 0.04
mm4_intergenic_Gm23624|4930593C16Rik_chr9_120858588_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm23624|4930593C16Rik_chr9_120858588_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Slc25a13_chr6_6203698_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Slc25a13_chr6_6203698_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Siae_chr9_37622123_F TCGTCGGCAGCGTCGAGGTTGACAGCAGTGATCCA 59.9 0.03
mm4_intron_Siae_chr9_37622123_R GTCTCGTGGGCTCGGCTTGAGGTTCTGCGACACCA 60.2 0.03
mm4_intergenic_Gm7745|Lrfn5_chr12_61474652_F TCGTCGGCAGCGTCTGGTCTCCTACATCTTCTGGGA 59.6 0.03
mm4_intergenic_Gm7745|Lrfn5_chr12_61474652_R GTCTCGTGGGCTCGGAGCCGCCGTCTTACCATATG 59.9 0.03
mm4_intergenic_RP23-175E16.1|RP24-225I21.1/Kirrel3_chr9_34427173_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_RP23-175E16.1|RP24-225I21.1/Kirrel3_chr9_34427173_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Ahctf1/Gm10518|Cdc42bpa_chr1_179878765_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Ahctf1/Gm10518|Cdc42bpa_chr1_179878765_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Wipf2|Cdc6_chr11_98907461_F TCGTCGGCAGCGTCTTCATGCCATACAGGACCGC 60.4 0.03
mm4_intergenic_Wipf2|Cdc6_chr11_98907461_R GTCTCGTGGGCTCGGACGTCCTCATTCTACTGGGC 59.1 0.03
mm4_intergenic_Gm26262|Trim36_chr18_46050944_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm26262|Trim36_chr18_46050944_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Gm12153_chr11_44099159_F TCGTCGGCAGCGTCGCCGTCAAGAAGCCTTTGTC 59.7 0.03
mm4_intron_Gm12153_chr11_44099159_R GTCTCGTGGGCTCGGTGGGAGAACAGGTATGGGCT 60.2 0.03
mm3_intron_Litaf_chr16_10991762_F Primer3: not found at this Tm N.d. 0.03
mm3_intron_Litaf_chr16_10991762_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Ggct_chr6_54990674_F TCGTCGGCAGCGTCTGTCATTCCGTCCGCTTCAA 59.9 0.03
mm4_intron_Ggct_chr6_54990674_R GTCTCGTGGGCTCGGAATGGGGAGTAGAGGTGGGA 59.2 0.03
mm4_intergenic_Olfr596|Olfr597_chr7_103314112_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Olfr596|Olfr597_chr7_103314112_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Anxa1_chr19_20387334_F TCGTCGGCAGCGTCCAAAGCACTGTTCAGGTGGC 59.9 0.03
mm4_intron_Anxa1_chr19_20387334_R GTCTCGTGGGCTCGGGGAGGAAAGAAACAAAGTCTTCCA 59.1 0.03
mm4_intergenic_B230112J18Rik|4930562A09Rik_chr5_116341871_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_B230112J18Rik|4930562A09Rik_chr5_116341871_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Fbp1|2010111I01Rik_chr13_62910374_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Fbp1|2010111I01Rik_chr13_62910374_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm4784|Gm4991_chrX_109692428_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm4784|Gm4991_chrX_109692428_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm26153|Jam2_chr16_84756428_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm26153|Jam2_chr16_84756428_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm15323|Ankrd55_chr13_112045797_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm15323|Ankrd55_chr13_112045797_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Nuak2_chr1_132329646_F TCGTCGGCAGCGTCTTTACCCATGCAGGTCCACC 59.9 0.02
mm4_intron_Nuak2_chr1_132329646_R GTCTCGTGGGCTCGGAAAGCCCTCAGTAGGCAAGC 60.3 0.02
mm4_intergenic_Gm12350|Akirin2_chr4_34525230_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm12350|Akirin2_chr4_34525230_R Primer3: not found at this Tm N.d. 0.02
mm3_intron_Akap6_chr12_52853474_F TCGTCGGCAGCGTCGCTTTGAACCTCAGTGTAGCC 59.1 0.02
mm3_intron_Akap6_chr12_52853474_R GTCTCGTGGGCTCGGGGGCTGCTTTAAAGTGGCAC 60.0 0.02
mm4_intron_Alk_chr17_71916765_F TCGTCGGCAGCGTCCTTGATTGGCAGCGTAGACG 59.3 0.02
mm4_intron_Alk_chr17_71916765_R GTCTCGTGGGCTCGGGACTGACTGCAGACCCTCAC 60.0 0.02
mm4_intron_Erc2_chr14_28071436_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Erc2_chr14_28071436_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Jakmip2_chr18_43589313_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Jakmip2_chr18_43589313_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Sgcd_chr11_47593388_F TCGTCGGCAGCGTCGGAATCCTCAGAATCCTGTGAA 57.5 0.02
mm4_intron_Sgcd_chr11_47593388_R GTCTCGTGGGCTCGGAGACTTGCATGTGTTTGGGA 57.6 0.02
mm4_intergenic_Snx6|Cfl2_chr12_54852690_F TCGTCGGCAGCGTCGGTCATCATTCCCTCCCTGC 60.1 0.02
mm4_intergenic_Snx6|Cfl2_chr12_54852690_R GTCTCGTGGGCTCGGTACTGCCTGGGCTAAACAGC 60.0 0.02
mm4_intergenic_Gm24981|Gm20667_chr14_67639238_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm24981|Gm20667_chr14_67639238_R Primer3: not found at this Tm N.d. 0.02
mm3_exon_Baiap2_chr11_119960252_F Primer3: not found at this Tm N.d. 0.02
mm3_exon_Baiap2_chr11_119960252_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Auts2|Gm25722_chr5_132709617_F TCGTCGGCAGCGTCAGAAGCCCTGTCCTACACCT 59.8 0.02
mm4_intergenic_Auts2|Gm25722_chr5_132709617_R GTCTCGTGGGCTCGGTAGCTTCACAGTCGTCCCTG 59.1 0.02
mm4_intergenic_Agap1|Gm25180_chr1_89458033_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Agap1|Gm25180_chr1_89458033_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Stt3b_chr9_115300745_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Stt3b_chr9_115300745_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm16542|Fhit_chr14_10814198_F TCGTCGGCAGCGTCCCACACATAAGAGACTCAGGCA 59.7 0.02
mm4_intergenic_Gm16542|Fhit_chr14_10814198_R GTCTCGTGGGCTCGGAGAGAATGCAAAGGCTGTGA 57.4 0.02
mm4_exon_Smg7_chr1_152846122_F TCGTCGGCAGCGTCGGAACACTGCCCCAAGGTTA 59.8 0.02
mm4_exon_Smg7_chr1_152846122_R GTCTCGTGGGCTCGGTCATCCCCATCCATCACCCT 60.0 0.02
mm4_intergenic_Gm23980|Gm22810_chr15_24611897_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm23980|Gm22810_chr15_24611897_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Mrpl18_chr17_12912592_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Mrpl18_chr17_12912592_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_9430091E24Rik|Glg1_chr8_111149848_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_9430091E24Rik|Glg1_chr8_111149848_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Stxbp5l|Gtf2e1_chr16_37504032_F TCGTCGGCAGCGTCTCTAGCAGCTTCCCTCAGGA 59.6 0.01
mm4_intergenic_Stxbp5l|Gtf2e1_chr16_37504032_R GTCTCGTGGGCTCGGCAGTTTTGTGTGTTGACTCGGT 59.5 0.01
mm4_intergenic_Gm22011|Mthfr-ps1_chr5_77828352_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm22011|Mthfr-ps1_chr5_77828352_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Wfikkn2|Gm21885_chr11_94267228_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Wfikkn2|Gm21885_chr11_94267228_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Glis3_chr19_28287516_F TCGTCGGCAGCGTCGGGGAGCTGGAATGACCTTA 58.7 0.01
mm4_intron_Glis3_chr19_28287516_R GTCTCGTGGGCTCGGAGGTGTGCATGAATGAGCAT 57.8 0.01
mm4_intron_Spns2_chr11_72476547_F TCGTCGGCAGCGTCACACCTCCTCTCTGTCCTGG 60.2 0.01
mm4_intron_Spns2_chr11_72476547_R GTCTCGTGGGCTCGGCTTGATGGACTGAGGGTGGC 60.3 0.01
mm3_intron_Wfdc6a_chr2_164581362_F Primer3: not found at this Tm N.d. 0.01
mm3_intron_Wfdc6a_chr2_164581362_R Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Ltbp1|Rasgrp3_chr17_75422816_F Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Ltbp1|Rasgrp3_chr17_75422816_R Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Gm25832|Myl1_chr1_66873862_F Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Gm25832|Myl1_chr1_66873862_R Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Gm23649|Lclat1_chr17_73032781_F Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Gm23649|Lclat1_chr17_73032781_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_P2ry4|Arr3_chrX_100600280_F TCGTCGGCAGCGTCCCAGTGGGGTCATAGAAAACAGA 59.9 0.01
mm4_intergenic_P2ry4|Arr3_chrX_100600280_R GTCTCGTGGGCTCGGTGCATTTTGACCGTGTTCACA 59.2 0.01
mm4_intergenic_Mir196a-1|Hoxb9_chr11_96271376_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Mir196a-1|Hoxb9_chr11_96271376_R Primer3: not found at this Tm N.d. 0.01
mm2_exon_Txndc15_chr13_55726131_F TCGTCGGCAGCGTCAGTGTCGTCAAACAGGAAAGTG 59.0 0.01
mm2_exon_Txndc15_chr13_55726131_R GTCTCGTGGGCTCGGGTAGACCTGCACTTCCCGTC 60.1 0.01
mm4_intergenic_Fam110b|Ubxn2b_chr4_6141457_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Fam110b|Ubxn2b_chr4_6141457_R Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Gm22548|Gm15669_chr1_67745393_F Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Gm22548|Gm15669_chr1_67745393_R Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_n-R5s209|Gm7846_chr1_27190271_F Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_n-R5s209|Gm7846_chr1_27190271_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm14108|Gm24221_chr2_148124663_F TCGTCGGCAGCGTCTGCTCATGCACTTCCCTTAAG 58.2 0.01
mm4_intergenic_Gm14108|Gm24221_chr2_148124663_R GTCTCGTGGGCTCGGCAGAGCTGGAGAGAGAGGGT 60.0 0.01
mm3_intergenic_Hmgcr|5S_rRNA_chr13_96801067_F Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Hmgcr|5S_rRNA_chr13_96801067_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Rpl21-ps5|Gm24508_chr16_84214753_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Rpl21-ps5|Gm24508_chr16_84214753_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_AC100386.1|Gm8394_chr10_85300862_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_AC100386.1|Gm8394_chr10_85300862_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Gda_chr19_21458917_F TCGTCGGCAGCGTCGCCTTATTCCCTCCAGCTCC 59.8 0.01
mm4_intron_Gda_chr19_21458917_R GTCTCGTGGGCTCGGGGCACATGGAAAGAAAGACACA 59.3 0.01
mm4_intergenic_Frk|Gm26341_chr10_34867495_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Frk|Gm26341_chr10_34867495_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Pigk|St6galnac5_chr3_152797767_F TCGTCGGCAGCGTCGCCAAAGAAGTATGCTGCAAAC 59.0 0.01
mm4_intergenic_Pigk|St6galnac5_chr3_152797767_R GTCTCGTGGGCTCGGGGCTCTTTCATTTCTGAGGTTTGT 59.7 0.01
mm4_intergenic_Gm14803|Gm9059_chrX_96956604_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm14803|Gm9059_chrX_96956604_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Eps8|Strap_chr6_137674619_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Eps8|Strap_chr6_137674619_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm8609|Gm22543_chr16_40227007_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm8609|Gm22543_chr16_40227007_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm25437|Gm22684_chr19_20010465_F TCGTCGGCAGCGTCGCTCTGTGGGGTTGATTGGA 59.9 0.01
mm4_intergenic_Gm25437|Gm22684_chr19_20010465_R GTCTCGTGGGCTCGGTCGTGTTGCTTTCTTTCACTGG 59.6 0.01
mm4_intergenic_Gm12080|Gm6685_chr11_28290907_F TCGTCGGCAGCGTCATTTCACTCCTCCCTGTGCC 59.6 0.01
mm4_intergenic_Gm12080|Gm6685_chr11_28290907_R GTCTCGTGGGCTCGGCCTCACAGTGCCCTTCCTAG 59.4 0.01
mm4_intergenic_RP23-32A8.1|Gm26176_chr7_73637574_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_RP23-32A8.1|Gm26176_chr7_73637574_R Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Park2|Agpat4_chr17_11975031_F Primer3: not found at this Tm N.d. 0.01
mm3_intergenic_Park2|Agpat4_chr17_11975031_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm18822|Hey1_chr3_8629215_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm18822|Hey1_chr3_8629215_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm23674|Gm26106_chr18_26661309_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm23674|Gm26106_chr18_26661309_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_4931417E11Rik|Gm26179_chr6_73510634_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_4931417E11Rik|Gm26179_chr6_73510634_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Cdh10|Gm25976_chr15_19495033_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Cdh10|Gm25976_chr15_19495033_R Primer3: not found at this Tm N.d. 0.01
mm2_intergenic_2310031A07Rik/Med7|2310031A07Rik_chr11_46445798_F Primer3: not found at this Tm N.d. 0.01
mm2_intergenic_2310031A07Rik/Med7|2310031A07Rik_chr11_46445798_R Primer3: not found at this Tm N.d. 0.01
mm2_intron_Tyw5_chr1_57393218_F Primer3: not found at this Tm N.d. 0.01
mm2_intron_Tyw5_chr1_57393218_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Ptprk_chr10_28417242_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Ptprk_chr10_28417242_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Wdr61|Crabp1_chr9_54764624_F TCGTCGGCAGCGTCCACCAGGGGAGAGCAAGTTC 60.3 0.01
mm4_intergenic_Wdr61|Crabp1_chr9_54764624_R GTCTCGTGGGCTCGGCGACTCCCCGCCCTAAGG 61.5 0.01
mm3_intron_Bnc2_chr4_84337376_F TCGTCGGCAGCGTCGAGGTCAGGAAACATGGCCT 59.6 0.00
mm3_intron_Bnc2_chr4_84337376_R GTCTCGTGGGCTCGGTGTTAGCGTTGGGACCTGTC 59.9 0.00
mm4_intergenic_Gm15400|Gm15399_chr3_123946367_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm15400|Gm15399_chr3_123946367_R Primer3: not found at this Tm N.d. 0.00
mm3_intergenic_Gm22886|Klhl14_chr18_21459069_F Primer3: not found at this Tm N.d. 0.00
mm3_intergenic_Gm22886|Klhl14_chr18_21459069_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Gm20757_chr10_92232364_F TCGTCGGCAGCGTCCAGCCCAAGGTCCACTGTAG 60.0 0.00
mm4_intron_Gm20757_chr10_92232364_R GTCTCGTGGGCTCGGACACAGACAACACCACAGAGT 59.4 0.00
mm4_intron_Prss12_chr3_123503946_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Prss12_chr3_123503946_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Cyp2a5_chr7_26840917_F TCGTCGGCAGCGTCCAATGTTCCCTGGCCTCCAT 60.0 0.00
mm4_exon_Cyp2a5_chr7_26840917_R GTCTCGTGGGCTCGGTTCCTGCCAATCACCCGATC 60.1 0.00
mm4_intergenic_Ctnna3|Gm23854_chr10_64302614_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ctnna3|Gm23854_chr10_64302614_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm9439|Gm14558_chrX_21532283_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm9439|Gm14558_chrX_21532283_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Mpp7_chr18_7506689_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Mpp7_chr18_7506689_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Trf_chr9_103207708_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Trf_chr9_103207708_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Dusp1|Gm8225_chr17_26514918_F TCGTCGGCAGCGTCCTCACTGACCACACTGGACA 59.2 0.00
mm4_intergenic_Dusp1|Gm8225_chr17_26514918_R GTCTCGTGGGCTCGGGTTCCTTGTCTGCCCTGGAG 60.3 0.00
mm4_intergenic_Ulk4|Trak1_chr9_121277700_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ulk4|Trak1_chr9_121277700_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Api5|Gm13788_chr2_94560961_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Api5|Gm13788_chr2_94560961_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Cyp2a4_chr7_26312747_F TCGTCGGCAGCGTCCAATGTTCCCTGGCCTCCAT 60.0 0.00
mm4_exon_Cyp2a4_chr7_26312747_R GTCTCGTGGGCTCGGTTCCTGCCAATCACCCGATC 60.1 0.00
mm4_intron_Col6a6_chr9_105736097_F TCGTCGGCAGCGTCTCCAAGTGACTTGTGTGGGG 59.8 0.00
mm4_intron_Col6a6_chr9_105736097_R GTCTCGTGGGCTCGGAGAGCCAGAAGATCCTCCCT 59.3 0.00
mm4_intron_Ttpa_chr4_20027015_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Ttpa_chr4_20027015_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Tbc1d5_chr17_51006306_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Tbc1d5_chr17_51006306_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Ptprg_chr14_11606583_F TCGTCGGCAGCGTCTCAGTTCCTGATTGGGAAAGCA 59.8 0.00
mm4_intron_Ptprg_chr14_11606583_R GTCTCGTGGGCTCGGTCCCAAGCTTCCACCAACAG 60.1 0.00
mm4_intron_Plbd1_chr6_136649874_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Plbd1_chr6_136649874_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Nkain2_chr10_32862329_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Nkain2_chr10_32862329_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Acat1_chr9_53587806_F TCGTCGGCAGCGTCCACACGGTGGCACTGAGTTA 60.2 0.00
mm4_intron_Acat1_chr9_53587806_R GTCTCGTGGGCTCGGACATTCAGCTTCGAGTGACTGT 59.9 0.00
mm4_intron_Abcd2_chr15_91168443_F TCGTCGGCAGCGTCGGGAAGGGCTCAGAGTTGAT 59.0 0.00
mm4_intron_Abcd2_chr15_91168443_R GTCTCGTGGGCTCGGATGAGCGTGGGGATATAGCC 59.0 0.00
mm4_intergenic_Rbpsuh-rs3|Cntnap2_chr6_46545739_F TCGTCGGCAGCGTCAATCAGAGGGTGAAGGGGCA 60.8 0.00
mm4_intergenic_Rbpsuh-rs3|Cntnap2_chr6_46545739_R GTCTCGTGGGCTCGGGCAGGGGCATAGAGTCCTTC 59.8 0.00
mm4_intergenic_Olfr718-ps1|Rbak_chr5_143172144_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Olfr718-ps1|Rbak_chr5_143172144_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Med24|Thra_chr11_98735082_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Med24|Thra_chr11_98735082_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Iqcf5|Iqcf3_chr9_106534151_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Iqcf5|Iqcf3_chr9_106534151_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm8183|Tmem135_chr7_89046675_F TCGTCGGCAGCGTCAGAGCAGGGATGGGAGGAAT 60.0 0.00
mm4_intergenic_Gm8183|Tmem135_chr7_89046675_R GTCTCGTGGGCTCGGTGCTCTTTTGGCTTCACAGC 59.3 0.00
mm4_intergenic_Gm7627|Gm24120_chr7_69814368_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm7627|Gm24120_chr7_69814368_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm23662|Arntl_chr7_113140462_F TCGTCGGCAGCGTCGCTCCACTCATGGCTCTCTC 59.8 0.00
mm4_intergenic_Gm23662|Arntl_chr7_113140462_R GTCTCGTGGGCTCGGTTGGTCTTCAGTCTCCACGC 59.9 0.00
mm4_intergenic_Gm17540|Gm21915_chr9_40555769_F TCGTCGGCAGCGTCGGCCCCTTATCCTAAAGACTCC 59.6 0.00
mm4_intergenic_Gm17540|Gm21915_chr9_40555769_R GTCTCGTGGGCTCGGAGGACTTCCTGATGCTGGGA 60.2 0.00
mm4_intergenic_Gm13508|Gm25215_chr2_49369812_F TCGTCGGCAGCGTCCTTTGGCACTCAGAGGGGAA 59.5 0.00
mm4_intergenic_Gm13508|Gm25215_chr2_49369812_R GTCTCGTGGGCTCGGTGAGGGTTTGTAGCTTACCACT 59.0 0.00
mm4_intergenic_Ctnnd2|Gm26416_chr15_31190394_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ctnnd2|Gm26416_chr15_31190394_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Aadac|Sucnr1_chr3_60072144_F TCGTCGGCAGCGTCGTAAGGAGGACTGGTGCTACC 59.5 0.00
mm4_intergenic_Aadac|Sucnr1_chr3_60072144_R GTCTCGTGGGCTCGGGAGTGTCAGCCAGTCTCCAC 60.0 0.00
mm4_intergenic_4930452L02Rik|Tekt3_chr11_63018631_F TCGTCGGCAGCGTCCCTCCTACCCACTGACCCTT 60.2 0.00
mm4_intergenic_4930452L02Rik|Tekt3_chr11_63018631_R GTCTCGTGGGCTCGGAGATGCTCTGTGTGCTTGCT 59.9 0.00
mm3_intron_A230009B12Rik_chr17_10476162_F Primer3: not found at this Tm N.d. 0.00
mm3_intron_A230009B12Rik_chr17_10476162_R Primer3: not found at this Tm N.d. 0.00

Off-target amplicon sequences with primers

These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.

ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313750 CGCATCACAAGGTGACCCTAGCTCCCCACTGCCATCTCCGCGGTCGCCGTCGACACGGCGCTGGGGCTACCCGGCGCCTG
CCTTGTCGCCTTAGCTCCTCTTCTCAGCCAAGATCCCAGGGAGCCTGGGATTAGGAG
mm4_intergenic_Tspan9|Gm10010_chr6_128168301 ACACCATGTCTCAGCACAGGGCTGACCACAGCTTCTCTTCTCAGCCCCAACTCTCCTCTCAGTCATGTCCCCAACTCCC
mm4_intergenic_Gm4691|Tead4_chr6_128223755 TACACACCACGTCTCAGCACAGGGCTGACCACAGCTTCTCTTCTCAGCCCCAACTCTCCTCTCAGTCATGTCCCCAACTC
CC
mm4_intron_4930433N12Rik_chr9_3178199 TTGGGTTGAGAGTTGGGGACATGACTAAGAGGAGAGTAGGGGCTGAGAAGAAAAGCTATGGTCAACCCTGTGGTGAGACA
TAGTGTGTATAGGGAAGGAAAAGTTAGAGAAACAGGGGTGTGATTTGCTGT
mm4_intergenic_Mapk4/Gm9925|Ska1_chr18_74093610 TGGGGCTCAGAGAGATCACAAGAGATCATAGGTCAAGGCCCAGAAGAGGAGCTATGGAAACTAGACAGGTGTGCGAAGC
mm4_intergenic_A630031M04Rik|1700112K13Rik_chr4_127666177 GATAAGACAGCAGGAGGGGCTGACGCAGGAGACGCCGCCGCTGCACGTGGGCCCCAGCTTCTCTTCCCAGCCCAGCACTG
CTGATAGTGCCGTGGTTCT
mm4_intergenic_Gm23315|Rprm_chr2_53984018 GACACTCCTGTCTGAACACACTAACCACAGCTCCTCTTCTGGGTCAAGTGGTGATGCTCACAGGAAGGTGGGGTCATTTT
GTGGCCTGTGGAAAATGTGGA
mm4_intergenic_Gm8513|Gm23755_chr13_45213446 TGCAAGCAAGAGCAATCCTTCCCTAGTTCCTCTTCTCTTTCAAGATGTAATAGGCTACAAGTCTCACTTTTATTGTTTCT
TTGCACAGTCTGTTGTCTCCTGGCCTCTG
mm4_intergenic_MIMT1_1|Mir3099_chr7_6797499 TCTGCAGGGTAGGGATGGATGGAGAGGTGGGGTGCATTTGGCAGGAGTAAGATAGGTCTCTGGGAAGAGAGGAATTGACA
GATTAGAGGAGCTAAGG
ACTGAGAGTGGCCAGCCTTGACTTTGCAGGTGTG
mm4_intron_Cyfip1_chr7_55880760 CCCAAGTCTTGAAGCTCCGTATACCTGGGTGGGAAGAGAAGCTAGGGGCTGCCTGAGCAGGTTAGTAACTGTTTGACCCC
GGTCC
mm4_exon_Pgd_chr4_149150553 GGAGCATGTGGTGGTTCAGAAACTATAGACCTCGGTGACTTCTTCAGCAATCACAGCCAACACTTGGCTAAGAGCAGGAA
CTAGGG
CAAAGGGGGGGTGCTGAGCGCCACGGGGCTGTCCTATTGCTGGGAGGGA
mm3_intergenic_n-R5s82|Pknox2_chr9_37034020 TGGCATGATGGGACAACACTTCTGCCCAGCAGGTCTCAGAGACAAGGAGGACCCTAGCTCCTGTCCTCAGCCATGTAGCC
AGCTTGTTCCCAAACAGGGCCATTTCTGTTACTCAAGGCAAAGCACTCCC
mm4_intron_Bpi_chr2_158273089 TGTGCACTGGTGTCCATAGTCTTGCCTCTGGCCTGGCCCTTATCTCTTCTTCTCAGCCTGTAACAATCTCCCAATATCCT
TTTCTCTCCTCGATGCAGTTATCAAATAATGGCAGATTCCAGCTGAACA
mm4_intron_Il1rap_chr16_26683654 AGAAAAGAAAGAAGAGGGGAGAGTAAGAGAGTGGCTGAGAAGAGGAAATTAGGAGGAAGAAGACTAAGAGACTGAAGAAG
ACTTAGCTGAATATTGTTTCACATATGTTATAAAACAGAGCAATAGAACACCAGA
mm2_exon_Col20a1_chr2_180996450 CAGCCACTGGACATCACTGTCCACAACGTGCTGGACTTCCCTCAGCTGGACACCCTAGCTCCTCTGCTCAGCCGACTCAT
TTGCCAAAAAATTCAGGGCAGAGGCCCAGGTAAGAACACAGCA
mm4_intron_Gng2_chr14_19951276 AGAGATCAAACAGCATCCCACATTTTTTTAAAGTGAGCTTAGAAGAGGAGCTGGGGGACTGATGGCTGTGTACTAGTTGG
TACACCCACCTCCTCGCTCCAGAGTAA
mm4_intergenic_Nhsl2|Gm25828_chrX_101884431 TGGAAGGCCAAGGTGAGTTCTCAGTTCTGCCTCTCCCTCTCCTGGTTGAGAAGAAGAGCTTGGGCAGATTTGAATACTGT
CCTGCTAGATGACTGCCAGG
mm4_intergenic_Mageb17-ps|Gm14781_chrX_91626440 TGTCAGGACTCATCGCAGATCCATGGCCCATAGCTCCTCTTCTAAGCAGTGGAATGTGTTATGAGATAAAACTAATAAAT
TTGCAACTTATTCTGTAATACATGAGAATTTGTATATGCATTTCCTTTGTTATTTTGCAA
mm4_intergenic_Zfp42|Gm22986_chr8_43371620 GCACACTACAACTGCATTCCACCCCTAGCTCCCCTTCTCTTCTAATATTTCCTTTATAATAAACACATCGATTCTCCTTT
ACTTTTTCTATGGTTTTTTTTCCTTTACTTTCTGTGTTTCCTGATGAATTCCA
mm4_intergenic_Fau-ps1|Macrod2_chr2_141990996 ATGCTCACTCACTGCATCCCACGCACCTTTGCTCCTTTTCTTTGCCAAGGCAATAGTGTGCCTCTTGGGGTG
mm4_intergenic_Gm2373|5330416C01Rik_chr13_97669064 GCAGAGAGGAGCCAGGATTCATGAATATACTGGCTCACATTCTTTTCTGCTGGCATGCTTGAGAGGAGGAGCTAAGGCCT
TGCTTGCTGAATTAGGGCGA
mm4_intergenic_Gm23735|Fndc3a_chr14_72293762 GGTCACACCTGGGCACATTAGTAACCAGGTGTGTTCATATCCAGTCTGAGGCTCTTACCTCAGCTGGCCAGGGGTGTGAA
GAGGAGCTAAGG
ACCCTGGAGGGTGGCAATGTCGACATCTGCT
mm4_intron_Sin3a_chr9_57077134 TGTGATGCCACGCCCCTCCCGCCCCGCCCCCTCCGGGATTTCCGCCTCCTTAGCAGTGAAGAGGAGCTGGGGAAAGCCCG
CTGTGGCGTCTGGCAGGGGGTCAGGGCTCCGTGTCTGCTCCTC
mm4_intergenic_Rab8b|Rps27l_chr9_66933899 TCAGGCAGTTCAAGGTCCACACTGATGCTCTGGGCTGCCCTGCTGCTGCTACCCCAAGCTCCTCTCCCCAGCCGAGTTCT
TTAAGCTGCTTGGACTTAAGCATCGAACATTCTACAGGCCTCTTCTCGGCAAATCAGGA
mm4_intergenic_Tmem126b|Dlg2_chr7_90786429 TCCACTTGGAAGACAGTTCTGGGATGGGTGATAAGAGGAGATAGGGACAGAAGGAGAGGAAGAATAAAATGTTGACATTG
AATGAATTCATATGAGAAGCAGGTGAGAATTCAC
mm4_intron_Stx17_chr4_48130475 TTGGAGTTCTGTTGCTGGTTACTTAGTAGATCACTTCGTCTAAGAAGAGGAGATAAGGGCCTTCCGTGAGAGGAGTTC
mm4_intergenic_Gm13726|4930440I19Rik_chr2_77991656 AAATATGAAGTGAAAGGAAGGCCTTTAACCCTAGCTCCTCTCCTCCTTCAAGTCCCCTCTCTCTTAAATCTCTCACCCCA
GAAAGGTAACACTGCA
mm4_intergenic_Gm22913|Gm20091_chr10_96274608 GGGTTGCTTCTTAGATACCACCATTGGATGAGAATAAAAGCTAAGGTTTCTGTCAGTATACCAGCTAGAGGAAAAAAAAA
TCACATAAAAGTTCTCTGTTCTCTTTAATGAAGTTTGCCAGGGAGAGTCTGA
mm4_intergenic_Zdhhc17|Gm5428_chr10_111074014 CACCTGGCATTCCCATCTGATGGTGTAACCATTGTTCCTCTTCTTATCCAACACAGAGATAGTTATTTCCTCTTTGTGTC
TGGCAGGAGC
mm4_intergenic_Gm26235|Gm25392_chr18_19547593 TCCTTGGAAAACTCTAAAGCAGAGATATACAGTATGGAGATTCATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN
NNNNNCCAACAAACCAATAAACAAGCTTTTAAAATCAGCCCT
mm3_intergenic_AC107236.1|Gm8623_chr8_47613097 TACACGCATACCTGGCAGAGCCCTTGGCTGAGGAAAGGAGCAATGGGAGAGGCCCGACTTCGAGCAGAAAGACAAGAGAC
TCACTCGGCCTTAGATGTGCTGAGTGTGGGACA
mm4_intergenic_Gm24817|Apcs_chr1_172860126 AGGGAAAAGCTACCAAGGCACTGGCCACAGCCCGTTGCTGGCTCTGCCAAGCATCCTCTTGGTTTTGAAAAGGAGCTATG
G
CCCTCCATACATCCTGGCATCAAAGAAAGCCTCAGCTGATGAGGGTCTAGCC
mm3_intergenic_1110051M20Rik|Gm13787_chr2_91325255 CAGAGACAGGCCAGATGGACTGCTCCCCATTGTCTAACTCCAGAGAGGCACAGCCACACGAGTGGCTGAGAACAGGAGCA
ACGG
GAAGGGAAGAGGGCTCAGAACATGCC
mm4_intergenic_Fam154a|Gm26017_chr4_86507059 ATGGCTTTCTCCACACACCCCTAGCCCAGTCTGATCATCCATAGCTCTTCTACACAGCAAATGCCTTTTCTCTGACCAGC
C
mm3_intron_Celsr1_chr15_86005571 AACCTCCCTACTGCCTTTAAAAAAAAAAAATCCTTCCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCAA
AACCATGGCTCCTCTTCTCTTCCAAACCTACCAGCCTCTGGCATGATTATGGTCAAGCTG
mm4_intergenic_5730507C01Rik|Gm3944_chr12_18570038 AACTTCCATGGGAGCAGGTGGCCATGTGATAGGGGAGTTTGGAGTTTAAGGACATTTTGTACCTCAGCTGCTCTTCTCAA
CCAC
AACTAGGACCCATGTGACATATGTGTGAGCCCACAAGTCACACAA
mm4_intron_Gm26861_chr13_10614433 AGGAGGGAATGGTAGACGGACAATAATTAATGATTAGCATTGGCTAATAAGAGAATCTAGGGGAGACCCTCACAAAGGGT
ATCAACGATATCCTAATGCTGTTCCCTAAGCTCAGTG
mm4_intergenic_AC154801.1|BC040587_chr16_40708803 CCCTGACGTTTGGTGTCTCACAAAATCATGTGTATTCATGTTGGCTGAGTGGAGGAACTCAGGAGACAGGCACATCTGCT
TTTGACTAAGCCTTTCTTAATGCTCATGGAGAC
mm4_intergenic_Gm5633|Gm22908_chr12_21823583 TAGCTCACATCACACCGGTCCTAGTTGTGGGTGAGAAGAGCAGCTGAGGTACAAAATGTCCTTAAACTCCAAACTCCCCT
ATCACATGGCCACTTACTCCTGTGGAAGTTGCTCCAGGCCTCTT
mm4_intergenic_Gm3993|Gm10479_chr12_20380336 AAGAGGCCTGGAGCAACTTCCATGGGAGCAGGTGGCTATGTGATAGGGGAGTTTGGAGTTTAAGGACATTTTGTACCTCA
GCTGCTCTTCTCACCCAC
AACTAGGACCGGTGTGATGTGAGCTA
mm4_intergenic_Gm21863|Gm3993_chr12_20013318 AACTTCCAAGGGAGCAGGTGGCTATGTGATAGGGGAGTTTGGAGTTTAAGGACATTTTGTACCTCAGCTGCTCTTCTCAC
CCAC
AACTAGGACCCATGTGACATATGTGTGAGCCCACAAGTCACACAACA
mm4_intergenic_Gm20474|Gm10330_chr12_23706154 TTGTGTGACTTGTGGGCTCACACATAGGTCACACGTGTCCTAGTTGTGGGTGAGAAGAGCAGCTGAGGTACAAAATGTCC
TTAAACTCCAAACTCCCCAATCACATGTCCACCTGCTCC
mm4_intergenic_Gm10476|Gm17391_chr12_22531111 TTGTGTGACTTGTGGGCTCACACATAGGTCACACGTGTCCTAGTTGTGGGTGAGAAGAGCAGCTGAGGTACAAAATGTCC
TTAAACTCCAAACTCCCCTATCACATGGCCAC
mm4_intergenic_Gm10330|Gm17330_chr12_23874828 TTGTGTGACTTGTGGGCTCACACATAGGTCACACGTGTCCTAGTTGTGGGTGAGAAGAGCAGCTGAGGTACAAAATGTCC
TTAAACTCCAAACTCCCCAATCACATGTCCACCTGCTCC
mm4_intergenic_2410018L13Rik|Gm26140_chr12_23085391 AGGTCACACGTGTCCTAGTTGTGGGTGAGAAGAGCAGCTGAGGTACAAAATGTCCTTAAACTCCAAACTCCCCTATCACA
TGGCCAC
mm4_intergenic_Gja5|Gm24435_chr3_97111439 CCACCCAGACTGCATTCTGTGCAGTCTGTTCTCTGGTGTTTAGTGAAGGACAGTCAAGACTATGACACCTGTCGTAACCT
TGGCTCCTTTTCTCAGTAAA
CAAATGCTTGAACAACAGCTGTGTGCCT
mm4_intergenic_Krt13|Krt15_chr11_100122018 GGCTGGATGGAATGTTCTGGAAACCCCTTAGCTCTTCATCTATGCCAATGCTCCCAACAATTCTGATCACAAATTTTGTT
GATCATAAAGAATTAGCCTCATTGGACACCTTGAGCCTGAA
mm4_intergenic_Tlr2|D930015E06Rik_chr3_83883699 AATGGGGTTGGAAGTTGGCAGATTGTCCCTCAGCTCCTCATTTCAGCTAACACAAGAAACTAGGCTAAGGTTGATAGTGG
GGTAAGGAACGTATTCTACCCCTAAAGAAGTACAGTTCTTCACAGGAGGGAGAGTGGAC
mm4_intergenic_Gm5449|Drd1a_chr13_53590279 ACTCCATAGCAAGGTTGGGGGACATTGCTCTTGGCTAGGAAGAGGAGAAATGGGGCAGCTTTGTTCTGTGTACAGAGTCT
TCAGACTATGACGAGAGTGGTAGACCATCCAGAGGTGTTAGCAAAGGGATGCAGGGTG
mm4_intron_Gabrg3_chr7_56767259 GAGGTAGCCACAAACAGCCTTTACTAAGTTGTATACAACTTAGGCTTGTGTATTCCATATATGCTGCCACCCTTAGATCC
TTTTCTCATCCTA
TACCCAGGTTACACTTTCAACA
mm4_intergenic_Gm11997|Vwc2_chr11_10386935 TCAACCAGAATAGAGCCTAAAAGTACTTAGGAAATGTATTATGCAACATAGGATTGCCTGGGAAGTGGAACTATGGGGAC
CTGAATGCCTATTGAGA
mm4_intergenic_Gm26173|Tbc1d4_chr14_101311959 GACCCACACACCCACTTCTCATGGGTTATCTCCCACAACTGGTCAGGCAAACTCTACCTTTGCTCCTCTACCCATCCAAA
CCCCCTGCTGCCATCTGCACTGCCCCTCACTCCAGCCAATTGT
mm3_intron_Wnt3a_chr11_59287204 GGGCTGCAGAGAAGAGTGAGAAGCCAGAGGCACCCATGTGCTGAGAAGAGGAACTAGAGTTGGTCTCTAAAGAAATGGGA
CTCGTTAAAGTGTCCCTGGGACACACACAGCACA
mm4_intergenic_Golga5|Chga_chr12_102525057 AGCAGAGCCTATCCTTTGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCTCTCCTTCCTGGCCGGGCTAGGAGAGAGTTGGTTTGGGGCA
mm4_intron_Dpp6_chr5_27210193 ACACACTGTGTTCAAAGGATTCATTTAAATACAGACATATGGGTAGAATAGAAAGATTAGGGATGGGAAGTTATAAGCAT
ATTGACTGTGAAAAGCAGCTACGGCTGTATGAGTACCAGGCACTGTGGAC
mm3_intron_Gria1_chr11_57268218 CTTAGAGCTCCTCGTCCCCTCCTCTAGCTCCTCTTCTCATCTCAGGTCTGATCTGAATGAACCTAAATCTCAGTTCCCTG
TATGAGGGGAAACATTTGTGTCTCTGGATGTGCTGG
mm4_intergenic_Gm5976|Tmem194b_chr1_52581927 CTGTGGCTGGTGAGGGTAAGCAACAGTCGAGGAAGTTCTCTAACAGAATGAAGGTGGCTGAGAGGAGGGGCTGGGGGTGG
CTGAGGAGAGTGGGTTTG
mm4_intron_Gbf1_chr19_46260397 TGCTGACCAGAAAACCTACAGTATGACTGTGAAGAGGAGCTCAGGAGATTTATCATTGTCATTATAGGCAGCATCTGAAA
AAAAAGGGAGGTGGCGACTTTTGCAGGATG
mm4_intergenic_Gm14243|Gm5270_chr2_161244091 GGCTAACCTGAGGCTGACAGCCTTAGCTCATCTTCCCAGGCCAGGCTGTGGTTCTGTCTGTCTTAGGTGAGCTGTTATCC
CTGTACTTTGAAGGCTGACTTCATGGGAGC
mm3_intron_Prkag2_chr5_25038886 GCCCATCAGCTGGTAGAACAACGAAGCCCTGGCTTCTCTGCTCAGCCAACCTTGAAGACATCTAGGGTTCCTAGAGCTTA
CCCTGTGCACAGTGTGAGTTCTAAACCCTACCTGAGGCCTCAGGTTGTCTGTC
mm4_intergenic_3100002H09Rik|RP23-230F2.8_chr4_124627493 AGACACAGATATAAATGCAGGCATATGGCTATAGATTGGGAGAGAAGGGGAGCGATGGCTGGCCTGCAATAACCACTCGA
TATGCAGACACTTTTAGATTAGTCCATGGCACAGAGTGACCTCCAGAG
mm4_intron_Lef1_chr3_131118303 GAGATTCCAGCTGTGGCCAAGTGGCACACACAGGGAGTCCTCTTCTGAAGTCTCCCCAGAACCATCTGCCCTTGCTCCTG
TTTTCAGCCAG
GTCAGACATCATGGTACCTACTCAGGAGAACTGCCTTTGCC
mm4_intron_Fam53b_chr7_132799723 GTTCCTGACACAGCTCAGCTAAAGAGGCCAAAGGGCCTGGGGAGCTCTGGGCTGAGAGGAGGGGCTGGGGTTACAGTCTG
AAGAATAGCAGGGCTATGGACTGCTTACAGGGTAGAGGTCAGAGGGTGGTTAGTGC
mm4_intergenic_Sema6a|Gm5506_chr18_47713419 TGGAAGTTACAAAGGAATGGGGATGGGCTGAGAGGAGGGGCTGAGGTTGGTGCAGCAGTAGACTATGAAGGGACTGGGTA
TGAGCCACATGCGGTGTCATGGGGTCCCTGATAGAAATGGGGTCAGGGGTGAG
mm4_intergenic_Nell1|Ano5_chr7_51390745 ATATCTTGGTGGTTAGCTCCTTTCCCTAGTTCCTCTTCTCATAGAATTCAGGCAATGCCACTTGGAAGTATCACAGTGGG
AGC
mm4_intergenic_Gm11680|BC006965_chr11_112253032 GACCCAGAGGAACAAAGGCAACTCCATATCCATCCTGATTTCTTGAATACCATAACTCATCTTCTCATCTAAACATGCTT
TGGAACTGGCCAGTGATGTAGTGATGTTGGGCACTCAGACTAGGGA
mm4_intergenic_Atg5|Prdm1_chr10_44367291 TTCAGCCTCCCTTTGAGCAGCTCCTCAGCTGCTATTCTCAGCCAGCATCTGGAGGTCTTCACCAGTCCTGACCTTTTCAT
AGACGAGTGGTGTGTGCCGAGCTTGTGCTGGAGGCGTTGCGTCTGAAAAG
mm4_intergenic_Ano6|D030018L15Rik_chr15_96044457 GAGCAATGGAGGTGGAACCAGGGAGAAGGCTTTCTCACGCTGGCTGGGAAGAGTAGCTGGGGAGACTGGGAATGGGTGTA
TTAACTGTGT
mm4_intergenic_Unc13c|n-R5s86_chr9_73969693 GGCTGAGAATTGAATGGGGCTTGCTTTTCCTTTTAGCTTAGCTGAGTAGAGGAGGTGGGGGGAGTAACCACTCCTACTTT
CCATCAATTAAGCATTTTTTAATCCTCTAACCCTCCTGTTGAAACA
mm4_intron_Cgnl1_chr9_71759494 CTAGCCAGGGTCTTCCTTGCCTCTCCTGAGCTCCTCTCCTCACCCCACTAATCCCCAACCCGGTTGCTCAGGTACAGCAG
A
mm4_intergenic_Adra1b|Gm12153_chr11_43930079 ACTCCCTTCTGTTTCCAGGGATGAGGAAATCCTTTTGGTTTGATTAGATGAGAAGAGGGGCTGAGGACCTTTCTCTTCAG
TAGCCCAATCCCAGGA
mm4_intergenic_Gm24503|Ccrn4l_chr3_50942322 GGATCAGAACCAGCAGAGCATGTTATATGTGGTATGCACAATATATCACGCTTTCTCATTCGTGATAGGAGGCTGAGAAG
AGCAGCCATGG
CCACGTACAAACTCCAGAGGCTGAGAATCCAGCTGCTACTCCATCCA
mm3_intron_Stard8_chrX_99052739 CGAGCCTCAGGTAGGATGCTTGCTTCAGAAGAGGAGCTAGAGCCAGATGTGCATACACTGTTAAGTTGGGAAGCAGAGCT
TCCTGTCCAGGCATTGCCAGAACATTCAGTATCCCTTAGCACACTGCATTGAGAGCACCA
mm3_exon_Cacna1b_chr2_24605737 TCATCCACGATGCTCAGAGCCAGAGATCAGGCACTTGGTTGAGCAGAGGAGCCAGGGTCATTGGGGACATCCCAGGCAGG
GTAGAAACATACA
mm4_exon_9130213A22Rik/Hes7_chr11_69121092 TTGAGTCGTTGGTTCCGGAGGTGCGAGGCCAGGTGAGAGATATTAGGAGAACGAGTGAAGGGTTTGAGTGAGAAGAGGAG
GTGTGG
TCGCACTGTGTGTCTGCCTTTCACCTTAGGTCTCTATCGCGCG
mm4_intergenic_Gm12159|Gm12160_chr11_45138607 TAAAGTGATGGGGAGCTGGCCTGGTTCACATTAGGACTTTGAAAGGTGGGCAGAGAAGTGGATCTAAGGGTAATATTGGC
AGAACCTTATAAATGACCTGATTGTTATTTTATATGGGCGACAACCTCCACATTA
mm4_intergenic_Gm13044|Gm13041_chr4_143496426 GGGTGGAGACTTCATCATTCCATCAGGTGGAGAGGTGTGGCTGAAAAGGGGAGGTATGGGAAGGGGGGAAGGAGTATATA
AGGACTCAGATGTCTGCACAAGACACTCTGAGCCT
mm4_intron_Map4k3_chr17_80597739 GAGTGGACACGGCATAGGAAACTCTATGTGCTGGAGAGAGACAGATAGGCTGAGCAGAGGGACTAAGGCCACACTGCCCA
AGGGGAGCAGCAGTGAGGCCTGAGCCGCCCCAGAGGCAGGAGAGGCTTCTGCTCTCA
mm4_intron_Tmem182_chr1_40846922 AGCAACCATCAAGAGCTCTGATTAAAGGTCAGGGTTAGTGTAGAATTTAGGTTGTATTCTGTTGCTTTTCAAGAACTGTG
TCTTCAGTTGGGCTGAGCAGGGCAGCTAAGGTGTTGGGGTTGGTTATTCAGCTCCTGCCA
mm4_intergenic_Plb1|Gm5864_chr5_32403617 AGGGGAATGAGAGCTAAAGGGGTGGGTGAGAGGAGGAGGTAAGGAAGGAAAGCTGGAGAAAAGCAAACAAACCTGCTTAG
GGAGAGTTAAGCTTTCTCCAATACATCAGTTGTCAGGGGCTGG
mm4_intergenic_Slc7a1|Ubl3_chr5_148424343 TTCAGCAATCTGTAAACTCATGGCCTTTTCTCCATTTCTCAGCCAATACCATCCACACCACTATTGCTGGTGGTGGTGGT
C
mm4_intron_Clstn2_chr9_97738135 CCCCTTCACCCCTTCAACATATATACAGGTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGT
TTCATGCCATCCAGTCCCATGTCTCCTCCTCACAGCCAACCTCTATGATGTGTGTCAGCA
mm4_intron_Siae_chr9_37622123 GAGGTTGACAGCAGTGATCCAGTGGCTGAGAAGAAGGGCAATGGGAGGTGTGGTTTCTAGGAAGCAAGCTATGAATGTCT
AAAATAGGGTCTTTCATGGCTTCTCATTTCTTAGTGGTGTCGCAGAACCTCAAG
mm4_intergenic_Gm7745|Lrfn5_chr12_61474652 TGGTCTCCTACATCTTCTGGGATGGAGAAAATATAAAATTATTGACTGAGAAGAGCAGAAAAGGCTTGGATCACCACATA
TGGTAAGACGGCGGCT
mm4_intergenic_Wipf2|Cdc6_chr11_98907461 TTCATGCCATACAGGACCGCCCCCCAAAAAGTAGGCCTTGTAGCCCTCTTAAAATCTAGCCCACCAGAATAATGAAAATA
GGGATGTTTGGCAGATAAGATGAGCAAAGGTAGCCCAGTAGAATGAGGACGT
mm4_intron_Gm12153_chr11_44099159 GCCGTCAAGAAGCCTTTGTCTATCTCTGAGATCTCTGTCATCTTGTCTGAGAGGATGAGATAGGGCAGGAGGTGATGTGT
GTTATAGGACTGATCACCAATGCCCTGAATGGCAAGGCAGAGCCCATACCTGTTCTCCCA
mm4_intron_Ggct_chr6_54990674 TGTCATTCCGTCCGCTTCAATGGCTCAATGCTCGTGTGTAACGTAGGTAGCTACCAGTCCAGATCAGCTCTTTCTTCTGA
TTTAGGGTTGACCTGATCTCCTCATCTCTGCCAATCCCACCTCTACTCCCCATT
mm4_intron_Anxa1_chr19_20387334 CAAAGCACTGTTCAGGTGGCACAGGGGGAATGGGAGGTGGATCCATAGCTACACTTCTCTGCCTACTTACCACCTAGATT
TTTCATGGAGACAAACTTAATTAAATGGAAGACTTTGTTTCTTTCCTCC
mm4_intron_Nuak2_chr1_132329646 TTTACCCATGCAGGTCCACCCTGGCTTCCTGCCTAGGAGTGGGCAGAGATGAACCCTTGGCTCAGAAGGGCAGCTCAGGC
TTCATGTAGTTACTGGGCCTTGCTTGCCTACTGAGGGCTTT
mm3_intron_Akap6_chr12_52853474 GCTTTGAACCTCAGTGTAGCCTTCTTTCCCAGAAATTCTGTAGCACTCTAGAGCTCCTCTACTCAGCAAACCTTTATTAT
CACCCACGAAGGACACAGTGCCACTTTAAAGCAGCCC
mm4_intron_Alk_chr17_71916765 CTTGATTGGCAGCGTAGACGGTTATCGAATTCCTGCCCTGTAGCTCCTCTTCCCAGAGACTGTGAGGGTCTGCAGTCAGT
C
mm4_intron_Sgcd_chr11_47593388 GGAATCCTCAGAATCCTGTGAATTACATAATTACATGACCTAGCTATTATTTCCCCTTCGATCCTCTTCCCAGGCAAATG
CAGAGTGAAATTGGTCACTTATCATAAAGTTTCCCAAACACATGCAAGTCT
mm4_intergenic_Snx6|Cfl2_chr12_54852690 GGTCATCATTCCCTCCCTGCCCTCACCTCCTCTTTTCAGACAAGGTCTTGCTGTTTAGCCCAGGCAGTA
mm4_intergenic_Auts2|Gm25722_chr5_132709617 AGAAGCCCTGTCCTACACCTATATCTCAATGGCTGAGATGATGAGCAAGGGGCGGGGGTGGGGGTGGGGGGCAGGGACGA
CTGTGAAGCTA
mm4_intergenic_Gm16542|Fhit_chr14_10814198 CCACACATAAGAGACTCAGGCATTCAAATATTCCTGATTTTGCATCTTCTTACTTTCTAATGTGACTTTAATTATTGCCA
CACACCTTTGCTCATATTCTCAGCTAAGAAATCACAGCCTTTGCATTCTCT
mm4_exon_Smg7_chr1_152846122 GGAACACTGCCCCAAGGTTACAAAGTACCCAGTGAGTGAACAGAAAGCCCTGCACCAAGGCCTCAGACAGAAGAATGTGT
ATTTACCTGGTCGGCTGGGAAGAGGAGGGAAGGCTCCAGGGTGATGGATGGGGATGA
mm4_intergenic_Stxbp5l|Gtf2e1_chr16_37504032 TCTAGCAGCTTCCCTCAGGAAAGAAACCAAGAACCCCACCCCAACCTCCTCGTCTCACCCAAAAGGGAAAATCAGAAGCA
AAGTCTATTATGGTTTCCAAGAATACCGAGTCAACACACAAAACTG
mm4_intron_Glis3_chr19_28287516 GGGGAGCTGGAATGACCTTATAATGAGCAATGGTTTGCTAAGAAGAGGAGGCAAGGGGGAAGCTTTGAACCCTAGTAAGT
GATCCTTTTTGCAGAAGAGGGACTTCAAAGGTTCTTGTAAATGCTCATTCATGCACACCT
mm4_intron_Spns2_chr11_72476547 ACACCTCCTCTCTGTCCTGGCCCAAGGCTTACTCACTATAGTGATCCCTGCCACCCCTGCAAGACTGGCGTCCATGCCTC
CTCTTCTAAGCCGA
CTTCCCTGATTTCTCTTCCTCCTGCCACCCTCAGTCCATCAAG
mm4_intergenic_P2ry4|Arr3_chrX_100600280 CCAGTGGGGTCATAGAAAACAGACATGAAAATATAAAGAGGATTAGTTGAGAAGAGGAGGCAAGGGAACAAGAAAGAGTA
ATGAGTGTGAACACGGTCAAAATGCA
mm2_exon_Txndc15_chr13_55726131 AGTGTCGTCAAACAGGAAAGTGTTGTCTCAGAAGAGGAGCTAAGATGGGAAGTATGGGCTAGGACGGGAAGTGCAGGTCT
AC
mm4_intergenic_Gm14108|Gm24221_chr2_148124663 TGCTCATGCACTTCCCTTAAGCCATGGCTCATCTTCTCAGGGAAACATCCCAGCACATCCTTTAATTAATTCTGCCATAC
CCTCTCTCTCCAGCTCTG
mm4_intron_Gda_chr19_21458917 GCCTTATTCCCTCCAGCTCCATTCTAGCCTTTCTGCTTCTTTCTGCTTCAGTAAAAGTTCCTAGCTCCTCTCCCCACCCC
A
CCCCTGTGTCTTTCTTTCCATGTGCC
mm4_intergenic_Pigk|St6galnac5_chr3_152797767 GCCAAAGAAGTATGCTGCAAACCTAATAAAGGTGAAGGCTGCGGAGAGGAGCTAAGATCAAATCAGAAGAAATCGAAAGG
AATCAAAATAGCAATTTCAACAGGTTGAGAGCAAAAACAAACCTCAGAAATGAAAGAGCC
mm4_intergenic_Gm25437|Gm22684_chr19_20010465 GCTCTGTGGGGTTGATTGGATCTGACAAGTGTTGTAGCTACTCACCGTAATGGATGTCTCTGCTTTCGCAGAGAAGAGGA
GGAAAGG
ATGTAATTCCCAGTGAAAGAAAGCAACACGA
mm4_intergenic_Gm12080|Gm6685_chr11_28290907 ATTTCACTCCTCCCTGTGCCCACTCTTGGCTGATAACTGTAGCTAGGGAGAAAATGGCAGTTTGTGTTTTCTAGGAAGGG
CACTGTGAGG
mm4_intergenic_Wdr61|Crabp1_chr9_54764624 CACCAGGGGAGAGCAAGTTCCAAGTTGCATCACTAGTGGCTGAGAAGATGAGGAATGGTGAGGGGCGCCTTAGGGCGGGG
AGTCG
mm3_intron_Bnc2_chr4_84337376 GAGGTCAGGAAACATGGCCTAACCATTTCATAGCTCCTCATCTCAGCAAGGTTATGCTAGACTTAAAAGTGCCCTATTCT
ACCCTAGGAAGATACAAAGAAACACCTCAAGACAGGTCCCAACGCTAACA
mm4_intron_Gm20757_chr10_92232364 CAGCCCAAGGTCCACTGTAGACACTAGAGGATCAGAGTTGGCTGAGAAGAGAATGGAGGGGGCAAAAGACAGAGTTTTGA
TTAGTCCTATACTCTGTGGTGTTGTCTGTGT
mm4_exon_Cyp2a5_chr7_26840917 CAATGTTCCCTGGCCTCCATCCTGTCTTAGTTTCTCCACTATGAAGTTCTTGGATACCTAAACCCATCCCTGTTCTTCTC
AGCCAA
GGTCCATGAGGAGATTGATCGGGTGATTGGCAGGAA
mm4_intergenic_Dusp1|Gm8225_chr17_26514918 CTCACTGACCACACTGGACAGATGACTCATTTGCTAGCCTTGACATCAATGGGTTTTGCCACCCATGGAGAGTGAAGTCA
CACCTCCAGTGCCCTGATATACTCTTCTCAGCCAACTCCAGGGCAGACAAGGAAC
mm4_exon_Cyp2a4_chr7_26312747 CAATGTTCCCTGGCCTCCATCCTGTCTTAGTTTCTCCACTATGAAGTTCTTGGATACCTAAACCCATCCCTATTCTTCTC
AGCCAA
GGTCCATGAGGAGATTGATCGGGTGATTGGCAGGAA
mm4_intron_Col6a6_chr9_105736097 TCCAAGTGACTTGTGTGGGGGGCTCATTCTATCCACATAAGCACAAAGAGGGAATCGTTAACCTTGGCTGAGAAGCTGAG
GCAAGG
AGGTCTAGGGAGGATCTTCTGGCTCT
mm4_intron_Ptprg_chr14_11606583 TCAGTTCCTGATTGGGAAAGCAAATCTCTCACAGTTGGTGGAGATGAGGTGCTAGGGGGATGTAGGGAAGTGATTGGAAA
GGATCAGCTAAAGAAGACAAAAGGTGGTTGCTGTTGGTGGAAGCTTGGGA
mm4_intron_Acat1_chr9_53587806 CACACGGTGGCACTGAGTTAATGTTTCTCCTCAGCACCTCTGCACAGCCAAACTAGAGCACACTCAATGTATTCTTCAAA
CCTATGTCAGAACCACATACTCTCTACAGTCACTCGAAGCTGAATGT
mm4_intron_Abcd2_chr15_91168443 GGGAAGGGCTCAGAGTTGATGACATCATCACATATACTTACAGTTCTCTATGCTACACAGCACGGAGCCATGGCTGTGAT
GAGGCGCTATGG
AGAGGTGGTTCTGGGCTATATCCCCACGCTCAT
mm4_intergenic_Rbpsuh-rs3|Cntnap2_chr6_46545739 AATCAGAGGGTGAAGGGGCAGGGGGGACTAGCTGTAGGCTGAGAATGGGTGCTAGGGAAAGGATGGGGACAGGATCAATT
GCTAAAATGTACAAAGACTGCAACCTCATGAAAACTATTTGAAGGACTCTATGCCCCTGC
mm4_intergenic_Gm8183|Tmem135_chr7_89046675 AGAGCAGGGATGGGAGGAATTAATTGGAAGGAGGTGATGAGGAAGAGGGATGAGAGGAGTTGGCTGGGAGGAGGTGATAG
GG
AGGAGGGATGGGAGGAGTTAGATGAGCTGTGAAGCCAAAAGAGCA
mm4_intergenic_Gm23662|Arntl_chr7_113140462 GCTCCACTCATGGCTCTCTCAGGCCTTAGCACCACTTCTCACTCAACAGACACAGCACCTCCATCATTCCTGGAAGGCGT
GGAGACTGAAGACCAA
mm4_intergenic_Gm17540|Gm21915_chr9_40555769 GGCCCCTTATCCTAAAGACTCCAAATCTTACCCTTATGCTCCAATCCGTGGCACATCTTCTCAGCCCAAGATGTTATCTT
TGGGTCTTTTCTCCATGTCATTCCCAGCATCAGGAAGTCCT
mm4_intergenic_Gm13508|Gm25215_chr2_49369812 CTTTGGCACTCAGAGGGGAATCAAAGGTCAGATCTTTCAGTGTTTTGTAAGAGACTACACTTGGGAGATAAGAGGTGCTA
AGG
ATGGGAGATTTTAAAGAAATTGGTCATAGTGGTAAGCTACAAACCCTCA
mm4_intergenic_Aadac|Sucnr1_chr3_60072144 GTAAGGAGGACTGGTGCTACCAGCACTGTGGCTGAGAAGACGCTCTATGGATGTCAGAAGTGCTGTCTCCATCAAGTTTC
TCCTCAGTGGAGACTGGCTGACACTC
mm4_intergenic_4930452L02Rik|Tekt3_chr11_63018631 CCTCCTACCCACTGACCCTTGCCCCTGACGGCTCTTCTCAGCCAAGCCTAGCAAGCACACAGAGCATCT

Input file for Crispresso

Crispresso, written by Luca Pinello, is a software package to quantify the Cas9-induced mutations on off- or on-targets.

Click here to download an amplicon input file for Crispresso. For each off-target, it includes the off-target name, its PCR amplicon and the guide sequence. Keep a copy of this file.

After sequencing, run CRISPRessoPooled. The tool will map the reads to the amplicons and analyse the mutations:
CRISPRessoPooled -r1 Reads1.fastq.gz -r2 Reads2.fastq.gz -f crisporAmplicons_mN1FkRligAThyqKv3eg3.txt --name MY_EXPERIMENT

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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.