← return to the list of all guides
Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313742_F | TCGTCGGCAGCGTCCGCATCACAAGGTGACCCTA | 59.7 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313742_R | GTCTCGTGGGCTCGGCTCCTAATCCCAGGCTCCCT | 60.1 | 1.00 |
| mm3_intron_Atp10b_chr11_43184705_F | TCGTCGGCAGCGTCTGTGAGCAAGGGATGAAGGG | 59.6 | 0.80 |
| mm3_intron_Atp10b_chr11_43184705_R | GTCTCGTGGGCTCGGACTGGTTAACAAGTCCCTGCT | 59.2 | 0.80 |
| mm4_intron_3010001F23Rik_chrX_152380647_F | Primer3: not found at this Tm | N.d. | 0.57 |
| mm4_intron_3010001F23Rik_chrX_152380647_R | Primer3: not found at this Tm | N.d. | 0.57 |
| mm4_intron_Fbxl19_chr7_127754714_F | TCGTCGGCAGCGTCGGGGAGGGGTTCAGATTGTG | 60.0 | 0.50 |
| mm4_intron_Fbxl19_chr7_127754714_R | GTCTCGTGGGCTCGGTACTGAGGCAAGGCGTTCTG | 60.0 | 0.50 |
| mm4_intergenic_Gm6999|Olfm4_chr14_79980013_F | Primer3: not found at this Tm | N.d. | 0.48 |
| mm4_intergenic_Gm6999|Olfm4_chr14_79980013_R | Primer3: not found at this Tm | N.d. | 0.48 |
| mm4_intergenic_Mitf|Gm765_chr6_98208764_F | Primer3: not found at this Tm | N.d. | 0.48 |
| mm4_intergenic_Mitf|Gm765_chr6_98208764_R | Primer3: not found at this Tm | N.d. | 0.48 |
| mm4_intergenic_Olfr1216|Olfr1217_chr2_89022892_F | Primer3: not found at this Tm | N.d. | 0.47 |
| mm4_intergenic_Olfr1216|Olfr1217_chr2_89022892_R | Primer3: not found at this Tm | N.d. | 0.47 |
| mm4_intron_Sipa1l3_chr7_29407832_F | TCGTCGGCAGCGTCGTGTGAGGAAACAGCCCTGA | 59.8 | 0.39 |
| mm4_intron_Sipa1l3_chr7_29407832_R | GTCTCGTGGGCTCGGTTCCTCAGTTGCAGCTCTCC | 59.6 | 0.39 |
| mm4_intergenic_Cd86|Ildr1_chr16_36672428_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_Cd86|Ildr1_chr16_36672428_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm3_intergenic_Gm23459|Gm24634_chr14_106321212_F | TCGTCGGCAGCGTCGTGATGGGCAGAGGTTCCAA | 59.9 | 0.38 |
| mm3_intergenic_Gm23459|Gm24634_chr14_106321212_R | GTCTCGTGGGCTCGGTGCTCTTTCTGTCCTTTGCAG | 58.7 | 0.38 |
| mm4_intergenic_Gm5944|Gm14903_chrX_115573369_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Gm5944|Gm14903_chrX_115573369_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm4_intergenic_Gm13996|Abtb2_chr2_103552286_F | TCGTCGGCAGCGTCGGGGCTTTTACAGTAGACCTCA | 59.4 | 0.36 |
| mm4_intergenic_Gm13996|Abtb2_chr2_103552286_R | GTCTCGTGGGCTCGGGTGGGCTCATCAGTCAGCTT | 60.0 | 0.36 |
| mm4_intergenic_Gm25921|Prss28_chr17_25307919_F | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intergenic_Gm25921|Prss28_chr17_25307919_R | Primer3: not found at this Tm | N.d. | 0.36 |
| mm4_intron_Fam63b_chr9_70643646_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intron_Fam63b_chr9_70643646_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm20641|Nrg3_chr14_38648475_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm20641|Nrg3_chr14_38648475_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Tmem2|Gm5514_chr19_21900217_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Tmem2|Gm5514_chr19_21900217_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intron_Zfp385b_chr2_77749973_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intron_Zfp385b_chr2_77749973_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intron_Cep135_chr5_76635649_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_Cep135_chr5_76635649_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_Snx27_chr3_94538569_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intron_Snx27_chr3_94538569_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm3_intergenic_5830416P10Rik|Dusp5_chr19_53492104_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm3_intergenic_5830416P10Rik|Dusp5_chr19_53492104_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Rtn4r|mmu-mir-6366_chr16_18158732_F | TCGTCGGCAGCGTCACAATGGGGAACAACCTGGG | 60.1 | 0.27 |
| mm4_intergenic_Rtn4r|mmu-mir-6366_chr16_18158732_R | GTCTCGTGGGCTCGGAAGTGAGGAGTGACTGTGGC | 59.6 | 0.27 |
| mm4_intergenic_2410088K16Rik|Sh3bp4_chr1_88786947_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_2410088K16Rik|Sh3bp4_chr1_88786947_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Gm7722|Gm14609_chrX_46904872_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm7722|Gm14609_chrX_46904872_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm23003|Gm26369_chr16_55740034_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm23003|Gm26369_chr16_55740034_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm6317|Gm25383_chr13_78548600_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm6317|Gm25383_chr13_78548600_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Arhgap22_chr14_33318453_F | TCGTCGGCAGCGTCAAACCTTTTCCTGGCTTGCC | 59.2 | 0.21 |
| mm4_intron_Arhgap22_chr14_33318453_R | GTCTCGTGGGCTCGGGGGAGGGTTGTGTGGTACAG | 59.9 | 0.21 |
| mm4_intergenic_Gm26179|Gm23924_chr6_74399288_F | TCGTCGGCAGCGTCCAGTTCCACTCCAGTATATTCATGA | 58.1 | 0.20 |
| mm4_intergenic_Gm26179|Gm23924_chr6_74399288_R | GTCTCGTGGGCTCGGTCTGCAGTGACTATGTGGAACA | 59.3 | 0.20 |
| mm4_intergenic_Gm23892|Gm25382_chr10_16161979_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm23892|Gm25382_chr10_16161979_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Scn3a_chr2_65565609_F | TCGTCGGCAGCGTCAGCAACCAGGAGAAGTGAGC | 59.9 | 0.19 |
| mm4_intron_Scn3a_chr2_65565609_R | GTCTCGTGGGCTCGGTTGGACCCTGGATGCTACCT | 60.2 | 0.19 |
| mm4_intergenic_Gm24326|Gm25923_chr12_27831541_F | TCGTCGGCAGCGTCCCTTCCCTCTGTCTTCCCCT | 60.2 | 0.19 |
| mm4_intergenic_Gm24326|Gm25923_chr12_27831541_R | GTCTCGTGGGCTCGGCATGAGTGGAGATGGAAGAAAAGA | 58.5 | 0.19 |
| mm4_intergenic_Gm26674/Sash1|Gm9930_chr10_9333271_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm26674/Sash1|Gm9930_chr10_9333271_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Anp32a_chr9_62374742_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Anp32a_chr9_62374742_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm15338|Hs3st4_chr7_124303239_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm15338|Hs3st4_chr7_124303239_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Rnf220_chr4_117311319_F | TCGTCGGCAGCGTCGGAGGAACAAGGATGGGGTG | 60.0 | 0.17 |
| mm4_intron_Rnf220_chr4_117311319_R | GTCTCGTGGGCTCGGCCCTCTACACCCCAGATCCT | 59.7 | 0.17 |
| mm4_intergenic_Gm13794|Gm13796_chr2_95516921_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm13794|Gm13796_chr2_95516921_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Btrc_chr19_45463758_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Btrc_chr19_45463758_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Tbc1d22a_chr15_86495468_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Tbc1d22a_chr15_86495468_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Jak1_chr4_101173845_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Jak1_chr4_101173845_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Myo3b_chr2_70145266_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Myo3b_chr2_70145266_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_exon_Gtf2e2_chr8_33775999_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_exon_Gtf2e2_chr8_33775999_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Herpud2_chr9_25148333_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Herpud2_chr9_25148333_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm24954|Gm5272_chr3_6425249_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm24954|Gm5272_chr3_6425249_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Fut8|Gm24070_chr12_77762019_F | TCGTCGGCAGCGTCGTCCTGATTCTGTCCTACAGCA | 59.5 | 0.15 |
| mm4_intergenic_Fut8|Gm24070_chr12_77762019_R | GTCTCGTGGGCTCGGTACAGTCCTCTGGGTCCCTG | 59.9 | 0.15 |
| mm4_intergenic_Rpl13a-ps1|Sorcs1_chr19_50106527_F | TCGTCGGCAGCGTCTATGGGGAGAGGGAAGGTCG | 60.1 | 0.15 |
| mm4_intergenic_Rpl13a-ps1|Sorcs1_chr19_50106527_R | GTCTCGTGGGCTCGGCGTGGCGCTGTAATGATTGG | 59.9 | 0.15 |
| mm4_intron_Tpd52_chr3_8973426_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Tpd52_chr3_8973426_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Fam20b|Gm15428_chr1_156773489_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Fam20b|Gm15428_chr1_156773489_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Tnfaip3|Olig3_chr10_19036369_F | TCGTCGGCAGCGTCTGAATCTACTGCCCCAGCTG | 59.4 | 0.14 |
| mm4_intergenic_Tnfaip3|Olig3_chr10_19036369_R | GTCTCGTGGGCTCGGAAGAAAAGAGCACTTCACAGAAAA | 57.4 | 0.14 |
| mm4_intergenic_Gm6767|Cblb_chr16_51961532_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm6767|Cblb_chr16_51961532_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_4930583I09Rik|Gm25344_chr17_64847111_F | TCGTCGGCAGCGTCGAGGCCATGGAAGTGGTCAA | 59.9 | 0.14 |
| mm3_intergenic_4930583I09Rik|Gm25344_chr17_64847111_R | GTCTCGTGGGCTCGGGCAAAGGCTCTTGGTCCCTT | 60.5 | 0.14 |
| mm3_intergenic_Gm13660|Gm13655_chr2_75571796_F | TCGTCGGCAGCGTCGCTGTGTGTCCTGGACTTGA | 59.8 | 0.14 |
| mm3_intergenic_Gm13660|Gm13655_chr2_75571796_R | GTCTCGTGGGCTCGGATCAGTGAGCCCTCCCTTCT | 59.9 | 0.14 |
| mm4_intron_Tmem163_chr1_127658169_F | TCGTCGGCAGCGTCAGGATGACTCGCCTGCTATT | 58.5 | 0.14 |
| mm4_intron_Tmem163_chr1_127658169_R | GTCTCGTGGGCTCGGTGAGCCTTACCCTCTCTCCT | 58.9 | 0.14 |
| mm4_intergenic_Csf1|Eps8l3_chr3_107780219_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Csf1|Eps8l3_chr3_107780219_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Txlnb|Heca_chr10_17881240_F | TCGTCGGCAGCGTCTCTCCTGAGATTCACAAGATCAAA | 57.6 | 0.14 |
| mm4_intergenic_Txlnb|Heca_chr10_17881240_R | GTCTCGTGGGCTCGGACCTAACTCTGGGAAACAAGACA | 59.2 | 0.14 |
| mm4_intergenic_Bmper|Npsr1_chr9_23548917_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Bmper|Npsr1_chr9_23548917_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intergenic_Gpr98|Lysmd3_chr13_81634426_F | TCGTCGGCAGCGTCCGTGAGCTCTCAAGTCGGTA | 59.1 | 0.13 |
| mm3_intergenic_Gpr98|Lysmd3_chr13_81634426_R | GTCTCGTGGGCTCGGCCAAGCCAAAATGTACTTCCGT | 59.4 | 0.13 |
| mm4_intron_Ptprd_chr4_77743409_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Ptprd_chr4_77743409_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Spty2d1_chr7_46999769_F | TCGTCGGCAGCGTCTGAGATGCAGTACAAGCGCA | 60.0 | 0.12 |
| mm4_exon_Spty2d1_chr7_46999769_R | GTCTCGTGGGCTCGGGGCCTCCAAAGAAAGACCCA | 59.8 | 0.12 |
| mm4_intron_Cdk14_chr5_5367784_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Cdk14_chr5_5367784_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Robo1_chr16_72750990_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Robo1_chr16_72750990_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm24302|6030458C11Rik_chr15_12750079_F | TCGTCGGCAGCGTCTCCCAAACCACTATGGCAACT | 59.5 | 0.11 |
| mm4_intergenic_Gm24302|6030458C11Rik_chr15_12750079_R | GTCTCGTGGGCTCGGCACTAGAGACAGCTGCTGGG | 59.8 | 0.11 |
| mm4_intron_Ntm_chr9_29818443_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Ntm_chr9_29818443_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Cacna1h|Tekt4_chr17_25470715_F | TCGTCGGCAGCGTCCCCACACTCAGGACCAGATC | 59.4 | 0.11 |
| mm4_intergenic_Cacna1h|Tekt4_chr17_25470715_R | GTCTCGTGGGCTCGGGGGTAGTGAAGGCTCCAAGG | 59.7 | 0.11 |
| mm4_intron_Rapgef4_chr2_72194520_F | TCGTCGGCAGCGTCTTGGGCACTTGCTAAGAGGG | 59.9 | 0.11 |
| mm4_intron_Rapgef4_chr2_72194520_R | GTCTCGTGGGCTCGGGTGCTCAGTGGTGTCACCTA | 59.3 | 0.11 |
| mm4_intergenic_Edn1|Phactr1_chr13_42493637_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Edn1|Phactr1_chr13_42493637_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_AC158354.1|Gm4804_chr12_15690538_F | TCGTCGGCAGCGTCCTGAGATCCAACACCCCACC | 60.0 | 0.10 |
| mm4_intergenic_AC158354.1|Gm4804_chr12_15690538_R | GTCTCGTGGGCTCGGTCTTTCCTCAACTTCCTGGTGA | 58.9 | 0.10 |
| mm4_intergenic_Wdr11|Gm23847_chr7_129913898_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Wdr11|Gm23847_chr7_129913898_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Nek2|1700034H15Rik_chr1_191856503_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Nek2|1700034H15Rik_chr1_191856503_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Slco6b1_chr1_96907401_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Slco6b1_chr1_96907401_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Lhx9_chr1_138836641_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Lhx9_chr1_138836641_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Fam19a2_chr10_123296445_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Fam19a2_chr10_123296445_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm2_intergenic_Gm5555|Gpr125_chr5_49595150_F | TCGTCGGCAGCGTCTGAGTACTTGTGAAGCAGGACA | 59.3 | 0.10 |
| mm2_intergenic_Gm5555|Gpr125_chr5_49595150_R | GTCTCGTGGGCTCGGGGGCCTTCAGCTGGTAAGAG | 60.1 | 0.10 |
| mm4_intron_Mark1_chr1_184933330_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Mark1_chr1_184933330_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sox5_chr6_144071150_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Sox5_chr6_144071150_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Ebf3_chr7_137310338_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Ebf3_chr7_137310338_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Kctd5_chr17_24053301_F | TCGTCGGCAGCGTCGCAGAGCTCACCGTGACATT | 60.6 | 0.09 |
| mm4_intron_Kctd5_chr17_24053301_R | GTCTCGTGGGCTCGGGGGCTGACAGCTGTCTTCTT | 59.9 | 0.09 |
| mm3_intron_Pard6b_chr2_168085139_F | TCGTCGGCAGCGTCGATCCCAGCTGTCAGTGCAA | 60.3 | 0.09 |
| mm3_intron_Pard6b_chr2_168085139_R | GTCTCGTGGGCTCGGCTGGTTTGTTTGTAGGCTCTCC | 59.1 | 0.09 |
| mm4_intron_Frem1_chr4_83011286_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Frem1_chr4_83011286_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Smoc2|Thbs2_chr17_14521589_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Smoc2|Thbs2_chr17_14521589_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Srxn1|Tcf15_chr2_152119540_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Srxn1|Tcf15_chr2_152119540_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Wwox_chr8_114936121_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Wwox_chr8_114936121_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Phb|Gm9796_chr11_95685779_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Phb|Gm9796_chr11_95685779_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Kmt2e_chr5_23447006_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Kmt2e_chr5_23447006_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm9630|Gm24080_chr15_14569478_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm9630|Gm24080_chr15_14569478_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Sntb1|Has2_chr15_56054737_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Sntb1|Has2_chr15_56054737_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Man1c1|Ldlrap1_chr4_134716340_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Man1c1|Ldlrap1_chr4_134716340_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_n-R5s30|Rbfox1_chr16_6746875_F | TCGTCGGCAGCGTCGCTGCACCTCTGGAGTATCC | 59.8 | 0.07 |
| mm4_intergenic_n-R5s30|Rbfox1_chr16_6746875_R | GTCTCGTGGGCTCGGTTGCACAATCCCTGACTGCA | 60.1 | 0.07 |
| mm4_intron_Rufy1_chr11_50393382_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Rufy1_chr11_50393382_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Vimp_chr7_66086053_F | TCGTCGGCAGCGTCCGCTGACATTCATGACGCTG | 59.9 | 0.06 |
| mm4_intron_Vimp_chr7_66086053_R | GTCTCGTGGGCTCGGCAAGGAAAGCGGTGGGAGAA | 60.2 | 0.06 |
| mm4_intron_Atp8a2_chr14_59965393_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Atp8a2_chr14_59965393_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Mir361|Chm_chrX_113079826_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Mir361|Chm_chrX_113079826_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Acpp|Mir2136_chr9_104359391_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Acpp|Mir2136_chr9_104359391_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Dgkh|Vwa8_chr14_78818032_F | TCGTCGGCAGCGTCAGTGTTCTCTGACCTGCTTCTG | 59.9 | 0.06 |
| mm4_intergenic_Dgkh|Vwa8_chr14_78818032_R | GTCTCGTGGGCTCGGTGTCATTCCCAATCCCACCTC | 59.7 | 0.06 |
| mm4_intergenic_Gm24208|Ddx1_chr12_13177879_F | TCGTCGGCAGCGTCCACTTCCGACTGCTCCTGAG | 60.1 | 0.06 |
| mm4_intergenic_Gm24208|Ddx1_chr12_13177879_R | GTCTCGTGGGCTCGGCCCTTGCCCTAGCTCTCATC | 59.6 | 0.06 |
| mm4_intergenic_4933433F19Rik|Dusp26_chr8_30746083_F | TCGTCGGCAGCGTCCCCCTGACCATTGCCTGATT | 60.0 | 0.06 |
| mm4_intergenic_4933433F19Rik|Dusp26_chr8_30746083_R | GTCTCGTGGGCTCGGGAATTGGAGGGTCCTGGCTG | 60.3 | 0.06 |
| mm4_intron_Zfhx3_chr8_108862261_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Zfhx3_chr8_108862261_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Adcy1_chr11_7083334_F | TCGTCGGCAGCGTCACTGTCTTCGGATTGGTCGT | 59.0 | 0.06 |
| mm4_intron_Adcy1_chr11_7083334_R | GTCTCGTGGGCTCGGGATGTTCATGAGGGCAGGGG | 60.4 | 0.06 |
| mm4_intron_Igsf21_chr4_140189462_F | TCGTCGGCAGCGTCCAGAGGAAGAGCTGTGTGCA | 59.9 | 0.06 |
| mm4_intron_Igsf21_chr4_140189462_R | GTCTCGTGGGCTCGGGCACCAGCAGACTCAGTTCT | 59.9 | 0.06 |
| mm4_exon_D3Ertd751e_chr3_41758674_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_D3Ertd751e_chr3_41758674_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Nrg1_chr8_31900609_F | TCGTCGGCAGCGTCGGCTGGAGAGAGAATACAGCT | 58.9 | 0.06 |
| mm4_intron_Nrg1_chr8_31900609_R | GTCTCGTGGGCTCGGGCTAACGGCCAAGCAAATGA | 59.4 | 0.06 |
| mm4_intron_Ptprs_chr17_56465159_F | TCGTCGGCAGCGTCCCAAGACTTTGAGGCGAGGT | 59.9 | 0.06 |
| mm4_intron_Ptprs_chr17_56465159_R | GTCTCGTGGGCTCGGGTGGTAGGAAAGACCCCAGC | 60.0 | 0.06 |
| mm4_intergenic_Gm16432|Desi2_chr1_178161182_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm16432|Desi2_chr1_178161182_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Adss|Gm16432_chr1_177958542_F | TCGTCGGCAGCGTCGCAGGTCCTGGCAGACTTTT | 60.5 | 0.06 |
| mm4_intergenic_Adss|Gm16432_chr1_177958542_R | GTCTCGTGGGCTCGGGCATACCTGAAACGGGACCT | 59.7 | 0.06 |
| mm4_intergenic_Glra2|Gm15236_chrX_165369426_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Glra2|Gm15236_chrX_165369426_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intron_Jph2_chr2_163382044_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intron_Jph2_chr2_163382044_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Atl2|Hnrnpll_chr17_79901266_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Atl2|Hnrnpll_chr17_79901266_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Tram2|Tmem14a_chr1_21217093_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Tram2|Tmem14a_chr1_21217093_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm7094|Gm4956_chr1_21273624_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm7094|Gm4956_chr1_21273624_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_5033411D12Rik_chr13_17517408_F | TCGTCGGCAGCGTCGCCAGCTCCTAGCCCCTAAT | 61.1 | 0.05 |
| mm4_intron_5033411D12Rik_chr13_17517408_R | GTCTCGTGGGCTCGGGCCTCATATCACCTTTCTGTACCT | 59.8 | 0.05 |
| mm4_intron_Fam168a_chr7_100833981_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Fam168a_chr7_100833981_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Tbp/Pdcd2|Prdm9_chr17_15536807_F | TCGTCGGCAGCGTCCCATCATCCGGGCTTGTCC | 60.5 | 0.05 |
| mm4_intergenic_Tbp/Pdcd2|Prdm9_chr17_15536807_R | GTCTCGTGGGCTCGGGTCTCAGAACGGGCGGAAC | 60.7 | 0.05 |
| mm4_intron_Llgl2_chr11_115838741_F | TCGTCGGCAGCGTCCACTCACCTCCAACCCAGTC | 59.9 | 0.05 |
| mm4_intron_Llgl2_chr11_115838741_R | GTCTCGTGGGCTCGGCACTAAGACCAGGACGTCCG | 59.8 | 0.05 |
| mm4_intergenic_Rhox9|Gm15474_chrX_37903495_F | TCGTCGGCAGCGTCTAGTGGTTCTGGGTTGGCTG | 59.6 | 0.05 |
| mm4_intergenic_Rhox9|Gm15474_chrX_37903495_R | GTCTCGTGGGCTCGGTCTGGTGGTGGTGAGAAGGA | 60.1 | 0.05 |
| mm4_intergenic_Rhox5|Rhox6_chrX_37825256_F | TCGTCGGCAGCGTCTCTGGTGGTGGTGAGAAGGA | 60.1 | 0.05 |
| mm4_intergenic_Rhox5|Rhox6_chrX_37825256_R | GTCTCGTGGGCTCGGTAGTGGTTCTGGGTTGGCTG | 59.6 | 0.05 |
| mm4_intergenic_Kap|Etv6_chr6_133968945_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Kap|Etv6_chr6_133968945_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Rbms3_chr9_116774963_F | TCGTCGGCAGCGTCACTGATGGGTGGAGGAAGGT | 60.1 | 0.05 |
| mm4_intron_Rbms3_chr9_116774963_R | GTCTCGTGGGCTCGGGTCCTAACACCAGCAACATGA | 58.2 | 0.05 |
| mm4_intergenic_Gm22546|Gm22194_chr10_11725045_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm22546|Gm22194_chr10_11725045_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Arhgap24_chr5_102519863_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Arhgap24_chr5_102519863_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Sulf1_chr1_12711099_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Sulf1_chr1_12711099_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gm10860_chr14_67434755_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Gm10860_chr14_67434755_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intron_Gm53_chr11_96252161_F | TCGTCGGCAGCGTCCCTTGTTCCACCGCATTTCC | 59.7 | 0.05 |
| mm3_intron_Gm53_chr11_96252161_R | GTCTCGTGGGCTCGGCACCAGGGAGGCCATTTAGG | 60.1 | 0.05 |
| mm4_intron_Ttc7_chr17_87358466_F | TCGTCGGCAGCGTCAACACTGGTGCGCAGTGATA | 59.9 | 0.05 |
| mm4_intron_Ttc7_chr17_87358466_R | GTCTCGTGGGCTCGGAGGAAGCCTTGCAGTGTCAA | 59.8 | 0.05 |
| mm4_intergenic_1700023C21Rik|Abca8b_chr11_109864192_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_1700023C21Rik|Abca8b_chr11_109864192_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm22538|Bche_chr3_73623947_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm22538|Bche_chr3_73623947_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Nxph1|Gm24104_chr6_9686289_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Nxph1|Gm24104_chr6_9686289_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Dock5|Nefm/Nefl_chr14_68021123_F | TCGTCGGCAGCGTCTGTCTTTTGATTCCGGCCCA | 59.8 | 0.04 |
| mm4_intergenic_Dock5|Nefm/Nefl_chr14_68021123_R | GTCTCGTGGGCTCGGGCTTCTGCCACCCTCTTCAT | 60.0 | 0.04 |
| mm4_intergenic_Vps37d|Mlxipl_chr5_135089419_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Vps37d|Mlxipl_chr5_135089419_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Krt33b|Krt34_chr11_100033384_F | TCGTCGGCAGCGTCCTGACCCTCCTCTCCCTTGA | 59.9 | 0.04 |
| mm4_intergenic_Krt33b|Krt34_chr11_100033384_R | GTCTCGTGGGCTCGGCCTGGGTACAGCAACTGGAG | 60.0 | 0.04 |
| mm4_intron_Ptpru_chr4_131781032_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ptpru_chr4_131781032_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Cacna2d2|Gm17141/Cacna2d2_chr9_107402895_F | TCGTCGGCAGCGTCTTGCTGCTAATGGCCCTGAT | 59.7 | 0.04 |
| mm4_intergenic_Cacna2d2|Gm17141/Cacna2d2_chr9_107402895_R | GTCTCGTGGGCTCGGGCAGGCCAGGTTAGGTACAG | 60.1 | 0.04 |
| mm4_intron_Fggy_chr4_95876797_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Fggy_chr4_95876797_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Ccdc113_chr8_95551295_F | TCGTCGGCAGCGTCCGGGCAATGGAGATCTACGT | 59.6 | 0.04 |
| mm4_exon_Ccdc113_chr8_95551295_R | GTCTCGTGGGCTCGGTTGTGGACAGAAGGAGGCTG | 59.6 | 0.04 |
| mm4_intergenic_Nup210|Hdac11_chr6_91133899_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Nup210|Hdac11_chr6_91133899_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_St3gal3_chr4_117949840_F | TCGTCGGCAGCGTCGCTAGTCAGGCCACATGTGT | 60.0 | 0.04 |
| mm4_intron_St3gal3_chr4_117949840_R | GTCTCGTGGGCTCGGTTTGAGGGCTGTCAGGGAAG | 59.5 | 0.04 |
| mm4_intron_Tox_chr4_6766911_F | TCGTCGGCAGCGTCACAGTCACTCACACTCTGCC | 59.6 | 0.04 |
| mm4_intron_Tox_chr4_6766911_R | GTCTCGTGGGCTCGGCTGCCTCTGCCTACCTAGGA | 60.1 | 0.04 |
| mm4_intron_Iffo2_chr4_139561645_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Iffo2_chr4_139561645_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Dnajb13_chr7_100512333_F | TCGTCGGCAGCGTCAGAAGTGGGAGAGGGAAGGG | 60.2 | 0.04 |
| mm4_intron_Dnajb13_chr7_100512333_R | GTCTCGTGGGCTCGGTGATGTTTTGTCCCCAGCCC | 60.5 | 0.04 |
| mm4_intron_Ankrd13c_chr3_157974665_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ankrd13c_chr3_157974665_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_exon_Wnt9a_chr11_59332082_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_exon_Wnt9a_chr11_59332082_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Pabpc1_chr15_36606030_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Pabpc1_chr15_36606030_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Gm15046_chrX_140184935_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Gm15046_chrX_140184935_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Gfod2_chr8_105714559_F | TCGTCGGCAGCGTCGAGGTGGGAAGTTGTCAGGG | 59.9 | 0.04 |
| mm4_exon_Gfod2_chr8_105714559_R | GTCTCGTGGGCTCGGTGTTCGTGCTCAGAGATCGC | 60.4 | 0.04 |
| mm4_intergenic_Gm26831|Gm8321_chr1_119071382_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm26831|Gm8321_chr1_119071382_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Mogat1|Acsl3/Utp14b_chr1_78621178_F | TCGTCGGCAGCGTCTGCGTGGGGTTCATAATGGT | 59.6 | 0.04 |
| mm3_intergenic_Mogat1|Acsl3/Utp14b_chr1_78621178_R | GTCTCGTGGGCTCGGCTCATAGGCCTGCTTCCTCG | 59.9 | 0.04 |
| mm4_intergenic_Vmn2r93|Vmn2r95_chr17_18380468_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Vmn2r93|Vmn2r95_chr17_18380468_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Dscaml1_chr9_45739080_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Dscaml1_chr9_45739080_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24478|Gm14255_chr2_162818664_F | TCGTCGGCAGCGTCCCTGACACCCTGCTGTCATT | 59.9 | 0.03 |
| mm4_intergenic_Gm24478|Gm14255_chr2_162818664_R | GTCTCGTGGGCTCGGCATTGCTTCTCCTGCAGGGA | 60.0 | 0.03 |
| mm4_intergenic_Ncoa1|Gm3625_chr12_4499942_F | TCGTCGGCAGCGTCAATGGGGCCAAAGGATCTGG | 60.0 | 0.03 |
| mm4_intergenic_Ncoa1|Gm3625_chr12_4499942_R | GTCTCGTGGGCTCGGCCCACCTGTCACTGGAAACA | 59.8 | 0.03 |
| mm4_intron_Hmbox1_chr14_64944040_F | TCGTCGGCAGCGTCTGCATGAAGAGCCAACAGGG | 60.6 | 0.03 |
| mm4_intron_Hmbox1_chr14_64944040_R | GTCTCGTGGGCTCGGCATAAGCCCTGAGAGCGCTT | 60.1 | 0.03 |
| mm4_intergenic_Fam43a|Gm26295_chr16_30794687_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Fam43a|Gm26295_chr16_30794687_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_4930555K19Rik|Oxr1_chr15_41420310_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_4930555K19Rik|Oxr1_chr15_41420310_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Pced1a/Vps16|Vps16_chr2_130434454_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Pced1a/Vps16|Vps16_chr2_130434454_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tmem108|Nphp3_chr9_103923061_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tmem108|Nphp3_chr9_103923061_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Acot7_chr4_152211332_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Acot7_chr4_152211332_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Cxadr_chr16_78338506_F | TCGTCGGCAGCGTCTCACTGTGGCTTTCTACCCT | 58.2 | 0.03 |
| mm4_exon_Cxadr_chr16_78338506_R | GTCTCGTGGGCTCGGAGAAGCACGGTCAAAGCGTA | 59.9 | 0.03 |
| mm4_intergenic_Gm11415|6030471H07Rik_chr4_84023029_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm11415|6030471H07Rik_chr4_84023029_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_2410076I21Rik|Hcn4_chr9_58818446_F | TCGTCGGCAGCGTCCATGCCCCAGTAGAATCCCC | 59.8 | 0.03 |
| mm3_intergenic_2410076I21Rik|Hcn4_chr9_58818446_R | GTCTCGTGGGCTCGGATCCCCTCTTCCTAGCACCC | 60.4 | 0.03 |
| mm4_intergenic_Gm4487|Gm24073_chr14_113838949_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm4487|Gm24073_chr14_113838949_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_6030443J06Rik|Gm21846_chr5_22770833_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_6030443J06Rik|Gm21846_chr5_22770833_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gas6|1700029H14Rik_chr8_13529668_F | TCGTCGGCAGCGTCCAGCTCGTGGATGGACAGAG | 60.1 | 0.03 |
| mm4_intergenic_Gas6|1700029H14Rik_chr8_13529668_R | GTCTCGTGGGCTCGGCTGTCCAAGGAGTGCTGAGG | 60.0 | 0.03 |
| mm4_intron_Lmx1a_chr1_167731242_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Lmx1a_chr1_167731242_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm11404|Gm11221_chr4_69484434_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm11404|Gm11221_chr4_69484434_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Fam163b_chr2_27140895_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Fam163b_chr2_27140895_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cd72|Sit1_chr4_43455045_F | TCGTCGGCAGCGTCCCCAGGACATCACCCCAATC | 60.1 | 0.03 |
| mm4_intergenic_Cd72|Sit1_chr4_43455045_R | GTCTCGTGGGCTCGGTGCAGAATGGGGCTCATGAA | 59.6 | 0.03 |
| mm4_intergenic_1700021F07Rik|Ankrd60_chr2_173541190_F | TCGTCGGCAGCGTCAACCACAAGTGCTGGGCATA | 59.8 | 0.03 |
| mm4_intergenic_1700021F07Rik|Ankrd60_chr2_173541190_R | GTCTCGTGGGCTCGGCCCCTTTGGCTCCTCCTTTC | 60.3 | 0.03 |
| mm4_intron_Btbd2_chr10_80655265_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Btbd2_chr10_80655265_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_4930529M08Rik_chr2_146024367_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_4930529M08Rik_chr2_146024367_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Bnc2_chr4_84655739_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Bnc2_chr4_84655739_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Plac1_chrX_53213557_F | TCGTCGGCAGCGTCAGGGCTCATCTACCCAGTGA | 59.6 | 0.02 |
| mm4_intron_Plac1_chrX_53213557_R | GTCTCGTGGGCTCGGGCCACCATGCCAACTTGATC | 59.8 | 0.02 |
| mm4_intergenic_Gm25714|Gm24997_chr3_44924064_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25714|Gm24997_chr3_44924064_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Cacna1c_chr6_118639891_F | TCGTCGGCAGCGTCAGTTGTCTGGCTTCCCAACC | 60.1 | 0.02 |
| mm3_intron_Cacna1c_chr6_118639891_R | GTCTCGTGGGCTCGGGCAGAGATGCCTGGGAACTT | 60.0 | 0.02 |
| mm4_intergenic_5730522E02Rik|Gm22868_chr11_26296801_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_5730522E02Rik|Gm22868_chr11_26296801_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Sbspon|4930444P10Rik_chr1_15940618_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Sbspon|4930444P10Rik_chr1_15940618_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Igsf9b_chr9_27330408_F | TCGTCGGCAGCGTCATCATTGGTGTGGGCAGAGG | 60.0 | 0.02 |
| mm3_intron_Igsf9b_chr9_27330408_R | GTCTCGTGGGCTCGGTGCTGCCTATGGGAGACAAC | 59.7 | 0.02 |
| mm4_intergenic_Snx29|Cpped1_chr16_11776912_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Snx29|Cpped1_chr16_11776912_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm5435|Gm8358_chr12_82508903_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm5435|Gm8358_chr12_82508903_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_4930486L24Rik_chr13_60843761_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_4930486L24Rik_chr13_60843761_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm12004|4930554G24Rik_chr11_13939965_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm12004|4930554G24Rik_chr11_13939965_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Rnf182_chr13_43621406_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Rnf182_chr13_43621406_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Tff3|Tff2_chr17_31135724_F | TCGTCGGCAGCGTCCTGGCAGAGGAAACACCACT | 59.8 | 0.02 |
| mm4_intergenic_Tff3|Tff2_chr17_31135724_R | GTCTCGTGGGCTCGGGGCTTCCTGACTACCTCTGC | 59.8 | 0.02 |
| mm4_exon_A830092H15Rik_chr3_26331751_F | TCGTCGGCAGCGTCGATGAAGGGATGCCAGGGTC | 60.1 | 0.02 |
| mm4_exon_A830092H15Rik_chr3_26331751_R | GTCTCGTGGGCTCGGGTGGCCGAGTACATGCATCT | 60.1 | 0.02 |
| mm4_intron_Myo1e_chr9_70324241_F | TCGTCGGCAGCGTCTGCATGGCCACTCTGAACTC | 60.3 | 0.02 |
| mm4_intron_Myo1e_chr9_70324241_R | GTCTCGTGGGCTCGGTAGACCACAGCCACAGGATT | 58.3 | 0.02 |
| mm4_intron_Plxdc1_chr11_97930649_F | TCGTCGGCAGCGTCTTGTGTGGCCCTTAGTGACC | 59.8 | 0.02 |
| mm4_intron_Plxdc1_chr11_97930649_R | GTCTCGTGGGCTCGGAGCTGAGAGACTTGTGCGTT | 59.6 | 0.02 |
| mm4_intergenic_Rps18-ps2|Gm23423_chr4_9160620_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Rps18-ps2|Gm23423_chr4_9160620_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Slc7a1_chr5_148383645_F | TCGTCGGCAGCGTCACATCAAGGCCAAAGCTGGA | 59.8 | 0.02 |
| mm4_intron_Slc7a1_chr5_148383645_R | GTCTCGTGGGCTCGGAGCCAACAGGAAGGTGTGAG | 59.8 | 0.02 |
| mm4_intron_Trappc3_chr4_126275002_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126275002_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126274787_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126274787_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126274723_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126274723_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126274631_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126274631_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126274569_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3_chr4_126274569_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_AC147224.1|Cdh12_chr15_21008356_F | TCGTCGGCAGCGTCTCAGTGTCTGATGTGAGCTACT | 58.5 | 0.01 |
| mm4_intergenic_AC147224.1|Cdh12_chr15_21008356_R | GTCTCGTGGGCTCGGTGGAGCCTTGATGAAGTTGGT | 59.5 | 0.01 |
| mm3_intron_Ccdc171_chr4_83575588_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Ccdc171_chr4_83575588_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Dcaf5|Scarna3b_chr12_80383787_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Dcaf5|Scarna3b_chr12_80383787_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Vmn2r102|Vmn2r-ps122_chr17_19704425_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Vmn2r102|Vmn2r-ps122_chr17_19704425_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Kcnj15_chr16_95297876_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Kcnj15_chr16_95297876_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Abhd2_chr7_79363190_F | TCGTCGGCAGCGTCGCATCTCTGAGGCTGCTTCA | 60.1 | 0.01 |
| mm4_exon_Abhd2_chr7_79363190_R | GTCTCGTGGGCTCGGCACGCGCCTTCTCTCTCTTA | 59.5 | 0.01 |
| mm4_intron_Nrp1_chr8_128421861_F | TCGTCGGCAGCGTCCAGGAGCTGAGACGAAGGTC | 59.8 | 0.01 |
| mm4_intron_Nrp1_chr8_128421861_R | GTCTCGTGGGCTCGGATCAGGGTGGTCTGAGGTGA | 59.8 | 0.01 |
| mm4_intergenic_Gm23708|G6pd2_chr5_61307125_F | TCGTCGGCAGCGTCGGCCTACACTTTGATCAGCG | 58.9 | 0.01 |
| mm4_intergenic_Gm23708|G6pd2_chr5_61307125_R | GTCTCGTGGGCTCGGAGGCAAGGATCATAGCATGTGT | 59.8 | 0.01 |
| mm3_exon_Tenm1_chrX_42657541_F | TCGTCGGCAGCGTCTGCTAACAGAGTTTCCTGAAGGA | 59.3 | 0.01 |
| mm3_exon_Tenm1_chrX_42657541_R | GTCTCGTGGGCTCGGAATGGTCCAGCCCACAACAA | 60.1 | 0.01 |
| mm4_intergenic_Gm22284|F630206G17Rik_chr11_45743626_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm22284|F630206G17Rik_chr11_45743626_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_n-R5s209|Gm7846_chr1_27020969_F | TCGTCGGCAGCGTCTGCATCACTAAAGGCAGTTGT | 58.1 | 0.01 |
| mm4_intergenic_n-R5s209|Gm7846_chr1_27020969_R | GTCTCGTGGGCTCGGAAGGGATGGAGGGATCCACA | 59.9 | 0.01 |
| mm4_intergenic_Chchd2|2410018M08Rik_chr5_129887473_F | TCGTCGGCAGCGTCGAAAAGCTCGGGCGCTAAAG | 59.9 | 0.01 |
| mm4_intergenic_Chchd2|2410018M08Rik_chr5_129887473_R | GTCTCGTGGGCTCGGGAGTGCAACCCCAGGAACTT | 60.1 | 0.01 |
| mm4_intron_Ttll11_chr2_35949057_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ttll11_chr2_35949057_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Vrtn|Syndig1l_chr12_84674973_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Vrtn|Syndig1l_chr12_84674973_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fam169b|Gm5334_chr7_68585491_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fam169b|Gm5334_chr7_68585491_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm15338|Hs3st4_chr7_124366641_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm15338|Hs3st4_chr7_124366641_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Aire_chr10_78031719_F | TCGTCGGCAGCGTCGCCAGCACCCTACATGGAAA | 60.3 | 0.01 |
| mm4_intron_Aire_chr10_78031719_R | GTCTCGTGGGCTCGGCTAGTCTGGGCTGTGCTCAC | 60.1 | 0.01 |
| mm4_intron_Begain_chr12_109044782_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Begain_chr12_109044782_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Muc6_chr7_141648539_F | TCGTCGGCAGCGTCGGTGTCTAGGGCTGCATCTG | 60.1 | 0.01 |
| mm4_intron_Muc6_chr7_141648539_R | GTCTCGTGGGCTCGGCCTGAAGAAGGGCAGTGTGT | 59.8 | 0.01 |
| mm4_intron_4930516K23Rik_chr7_104023750_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_4930516K23Rik_chr7_104023750_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Caln1_chr5_130596339_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Caln1_chr5_130596339_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Tln1_chr4_43554939_F | TCGTCGGCAGCGTCCTGAAAGGGCGATGACCCAT | 60.1 | 0.01 |
| mm4_exon_Tln1_chr4_43554939_R | GTCTCGTGGGCTCGGACCCTGTTATGGCTTGGGAC | 59.6 | 0.01 |
| mm4_intron_Ptpn14_chr1_189813774_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ptpn14_chr1_189813774_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Rpl9-ps4|Gm20554_chr13_72487319_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Rpl9-ps4|Gm20554_chr13_72487319_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cdc42bpa_chr1_179993049_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cdc42bpa_chr1_179993049_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Mphosph9_chr5_124253442_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Mphosph9_chr5_124253442_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Smg7_chr1_152846130_F | TCGTCGGCAGCGTCCACCAAGGCCTCAGACAGAA | 59.6 | 0.00 |
| mm4_exon_Smg7_chr1_152846130_R | GTCTCGTGGGCTCGGCGCCTGTCACTCAAACTCCA | 60.2 | 0.00 |
| mm4_intergenic_Kif2b|Gm11498_chr11_91748566_F | TCGTCGGCAGCGTCGCAATCCTTCCTCAGGCTGT | 60.0 | 0.00 |
| mm4_intergenic_Kif2b|Gm11498_chr11_91748566_R | GTCTCGTGGGCTCGGGGTCCTCAGGTTGCTGATAGG | 59.8 | 0.00 |
| mm4_intergenic_Ankrd55|Il6st_chr13_112392537_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ankrd55|Il6st_chr13_112392537_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22140|Gm5908_chr8_32283009_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22140|Gm5908_chr8_32283009_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_1500016L03Rik|1700109G15Rik_chr11_84684747_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_1500016L03Rik|1700109G15Rik_chr11_84684747_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313742 |
CGCATCACAAGGTGACCCTAGCTCCCCACTGCCATCTCCGCGGTCGCCGTCGACACGGCGCTGGGGCTACCCGGCGCCTG CCTTGTCGCCTTAGCTCCTCTTCTCAGCCAAGATCCCAGGGAGCCTGGGATTAGGAG |
| mm3_intron_Atp10b_chr11_43184705 |
TGTGAGCAAGGGATGAAGGGGCTACAGGAGCTTGTTTTGCAAAGAATATGGAAGAGGAGATAAGGAAACATGGAGCAGTG GTCTACTAAAATATCAAAAAGTGAAGCAGGGACTTGTTAACCAGT |
| mm4_intron_Fbxl19_chr7_127754714 |
GGGGAGGGGTTCAGATTGTGACTGGAGAGGAGATGAGGAGACAAGGTCTTGCTGTGAACTCAGAACGCCTTGCCTCAGTA |
| mm4_intron_Sipa1l3_chr7_29407832 |
GTGTGAGGAAACAGCCCTGAGTGGGACAAAGAGGAGCCAGGGAGACAGGGAAAGTGGGGTCACTCCTCAGGGTGGTCACC CTTATAAAGGAAGGAAATGCAAGATGAAGGAGAGCTGCAACTGAGGAA |
| mm3_intergenic_Gm23459|Gm24634_chr14_106321212 | GTGATGGGCAGAGGTTCCAAGTGAATTCGTAGAAAAAGAGGTGCTAAGGAGACAGGGCTGCAAAGGACAGAAAGAGCA |
| mm4_intergenic_Gm13996|Abtb2_chr2_103552286 |
GGGGCTTTTACAGTAGACCTCAGTAAGATCCAGAGGAGCTAGGGAGACATGGTATAAACAAGGAGGCTGCAAGCTAATAA TTATGAAAGCTGACTGATGAGCCCAC |
| mm4_intergenic_Rtn4r|mmu-mir-6366_chr16_18158732 |
ACAATGGGGAACAACCTGGGGCTGGTCAATATAAAGAGGAGCAAAGGAGGCAGGGCTTAGAGACCCTGATCCCATCACCC TGGGCCACAGTCACTCCTCACTT |
| mm4_intron_Arhgap22_chr14_33318453 |
AAACCTTTTCCTGGCTTGCCCCAGTCAGCAATCCTCCCTGTCTGCTTAGCTCTTCTGCCCACACTGGACAGCTTTGGTCT CCCAGCACACTGTACCACACAACCCTCCC |
| mm4_intergenic_Gm26179|Gm23924_chr6_74399288 |
CAGTTCCACTCCAGTATATTCATGAGTTTAATTTCTAGAGGAGCTAAGGCAAAAAGGTGAGAAAAATCATATGCATTTGT CTCAGGAAGTTTGTTCCACATAGTCACTGCAGA |
| mm4_intron_Scn3a_chr2_65565609 |
AGCAACCAGGAGAAGTGAGCATCCAAGCCAGATGAGCAGCTAAGGAGGCACGGCAACTTTAAAAACACAATCAAACAGGT AGCATCCAGGGTCCAA |
| mm4_intergenic_Gm24326|Gm25923_chr12_27831541 |
CCTTCCCTCTGTCTTCCCCTTTATCTCCATTTTCCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNCTTACCCCATCTTCTCTTTTCTTCCATCTCCACTCATG |
| mm4_intron_Rnf220_chr4_117311319 |
GGAGGAACAAGGATGGGGTGCAAAGGAAAGCAGGAAGGAGGAGGAGGAAAGGAGACAGGGTAGTTTACACAGACAACTAG CTAGGATCTGGGGTGTAGAGGG |
| mm4_intergenic_Fut8|Gm24070_chr12_77762019 |
GTCCTGATTCTGTCCTACAGCAAATCCATGTCATCTTGGCTCCTCTGCTCTGAGGCTGGCCCCCTGTTGATTCCATAGGA AGCAGCACCCATCAGGGACCCAGAGGACTGTA |
| mm4_intergenic_Rpl13a-ps1|Sorcs1_chr19_50106527 |
TATGGGGAGAGGGAAGGTCGGTCTCATCGACCCAATCATAGGCTACCAATCCCTGGGCACAGAGCAAAAGCAGAGGAGAT AAGACCACAGGGACCATCTGTCCACTTTAACAAAGGGGCCAATCATTACAGCGCCACG |
| mm4_intergenic_Tnfaip3|Olig3_chr10_19036369 |
TGAATCTACTGCCCCAGCTGTGCTTTCTTGTCTGTCTGTTTCTGTACCTTTCACACCCTTATGCCTTAGCCCCTCTTCCT GCACTCAATTTCTTACTATTTTTCTGTGAAGTGCTCTTTTCTT |
| mm3_intergenic_4930583I09Rik|Gm25344_chr17_64847111 |
GAGGCCATGGAAGTGGTCAATTCACCAGAAGGTGGGAAGCTAGCAAGGACTTGTGATATTTATGTGTCAGAAACCCTGTG GCCTTAGCTTCTCCTCGAAGGGACCAAGAGCCTTTGC |
| mm3_intergenic_Gm13660|Gm13655_chr2_75571796 |
GCTGTGTGTCCTGGACTTGATAGATACATAAACTCACATATGCACAGATGACACAAGGAAGAAGAGAAGCTAAGGGAACA AGGGGGACCAGGAGAAAGAAGGGAGGGCTCACTGAT |
| mm4_intron_Tmem163_chr1_127658169 |
AGGATGACTCGCCTGCTATTTATATACATATAAGGATCACTACAGAGGTAGATTGTACCCTTTGAGAAGGGGAGCACAGG AGACATGGAGGAGAGAGGGTAAGGCTCA |
| mm4_intergenic_Txlnb|Heca_chr10_17881240 |
TCTCCTGAGATTCACAAGATCAAAGGAAAAGGAGATGAGGCTACAAGGAGACCCTTGAAATAAAAATTACCTTCCAATGA GTTCTTTGTCTTGTTTCCCAGAGTTAGGT |
| mm3_intergenic_Gpr98|Lysmd3_chr13_81634426 |
CGTGAGCTCTCAAGTCGGTAGCATAGTAAGAGGATTTAAGGCGACAGAGAATCAAAATCATGAGCCAGTTATCCAGATAA TCATAAAGCAAAACAAAAAATGGGAAGACGGAAGTACATTTTGGCTTGG |
| mm4_exon_Spty2d1_chr7_46999769 |
TGAGATGCAGTACAAGCGCATACCTTTTTGTCTAAGCTCCTCTTCTTTCCGCCTAAGGAAAGCTTGCACAGCTGCCGACT GGACACCTTTCACTTTTGGGTCTTTCTTTGGAGGCC |
| mm4_intergenic_Gm24302|6030458C11Rik_chr15_12750079 |
TCCCAAACCACTATGGCAACTAGCACCCCCACCCCCACAGCCAACCAGTGTCCCTGTGTCCTCAGCTGCTCTTCTTAACA TTCCTTTCCTCTCCAGACTTCCACCGAAGATCCAGCCTCCCCCAGCAGCTGTCTCTAGTG |
| mm4_intergenic_Cacna1h|Tekt4_chr17_25470715 |
CCCACACTCAGGACCAGATCATGGAAGAACATCTCAGAAAAGGAGCCAAGGAGCCAGGGAGGAGGGCAGGGGTGTCAGGG ACCTTGGAGCCTTCACTACCC |
| mm4_intron_Rapgef4_chr2_72194520 |
TTGGGCACTTGCTAAGAGGGCCTGGCTCCTCTGGCATCCCTGTGGCCCCAGCTTCTCTTCGTTATCTTTTGAGGTCCTGT GCTTTCTAGGTGACACCACTGAGCAC |
| mm4_intergenic_AC158354.1|Gm4804_chr12_15690538 |
CTGAGATCCAACACCCCACCATGGGACTCAATGTTGAAAGCACTGAATTTCAATGCAGAGTGAGAAGAAAAGATAAGGCG AGAAGGTGACTCCTCACCAGGAAGTTGAGGAAAGA |
| mm2_intergenic_Gm5555|Gpr125_chr5_49595150 |
TGAGTACTTGTGAAGCAGGACAGAAAGAAGAGAAGAGGAGCTAGGGGGACATGGCAAGGGAAGGATCCTGTCACCTTACA GACAAGTTGAAGTCTGTAGAGCAAGAGACGGGTTGAAGTCTCTTACCAGCTGAAGGCCC |
| mm4_intron_Kctd5_chr17_24053301 |
GCAGAGCTCACCGTGACATTTATGCTTAATCTGAGTCACTGCCTTGGTGCCTCAGCTCCTCTTGGTCACTCTGGTGTGAA GGCAGGAAGTAAGGAAGAAGACAGCTGTCAGCCC |
| mm3_intron_Pard6b_chr2_168085139 | GATCCCAGCTGTCAGTGCAAGCTCAAGGGCAGCTAAGGCGACACAGGGAGAGCCTACAAACAAACCAG |
| mm4_intergenic_n-R5s30|Rbfox1_chr16_6746875 | GCTGCACCTCTGGAGTATCCTGGAAAAAGAGGAGCTCTGGAGACAGGGAAGGCTCCTGCAGTCAGGGATTGTGCAA |
| mm4_intron_Vimp_chr7_66086053 |
CGCTGACATTCATGACGCTGGGATTCTTGGTTGCGGAAAAGTGGCTCCTGTCCACGGAGCAGGAAGCGGAGCAAAGGCCA CGTGGTGGGTTCTCCCACCGCTTTCCTTG |
| mm4_intergenic_Dgkh|Vwa8_chr14_78818032 |
AGTGTTCTCTGACCTGCTTCTGTACAGTAAATATTTAGTAAACATTCCAAATAAAATATGCTTCTTTCTTTTTATGAAGA GGAAGTCAGGAGACAAGGAGAAATGAAGAAGAGGTGGGATTGGGAATGACA |
| mm4_intergenic_Gm24208|Ddx1_chr12_13177879 |
CACTTCCGACTGCTCCTGAGAGGTCCTGGCCTCCTCAGCTCCTCTTCTGGCTCCATGGCCCTTCCTTATGAAGATGAGAG CTAGGGCAAGGG |
| mm4_intergenic_4933433F19Rik|Dusp26_chr8_30746083 |
CCCCTGACCATTGCCTGATTCATTCCCTTCCCTGACACCTTAGATCCTCTCCTAGCTTCCCTGTCAGCCAGGACCCTCCA ATTC |
| mm4_intron_Adcy1_chr11_7083334 |
ACTGTCTTCGGATTGGTCGTCTTGACCCTGTCACCATAGCTGCTCTTACGCAAGTTCAGTTACTTTCTATTGTGCTGGCA TTGTGTGCTGCCCCTGCCCTCATGAACATC |
| mm4_intron_Igsf21_chr4_140189462 |
CAGAGGAAGAGCTGTGTGCAGGGGCGTCCTCAGGGGTGTCTCCTGGGACAGCAACTGTGAGCCATGGAGAAGGAGCAAAG GGGACAGGGTTGGTCCCCGGGTACTATGAAACAGAACTGAGTCTGCTGGTGC |
| mm4_intron_Nrg1_chr8_31900609 |
GGCTGGAGAGAGAATACAGCTACCAGCATCTCAGGTTATTGTCTTTGCAACATCAGAGGAGGAGGAGAAGCCAAGGGGAC AGGGACAGAATAAACTGGGAATTCCCTGTAGAAATAGTTTTCATTTGCTTGGCCGTTAGC |
| mm4_intron_Ptprs_chr17_56465159 |
CCAAGACTTTGAGGCGAGGTTATATCCAGTGCTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNGCTTCTCCACCATGCTGGGGTCTTTCCTACCAC |
| mm4_intergenic_Adss|Gm16432_chr1_177958542 |
GCAGGTCCTGGCAGACTTTTGTCTCCTTTTGAGGAAACAAGTACTTCAATCCAGAAAGTAAGCTCTCTATGCCAAATGCT TGGCCATGTCGCCATTGTGCCTCTTCCTGTGAGGTCCCGTTTCAGGTATGC |
| mm4_intron_5033411D12Rik_chr13_17517408 |
GCCAGCTCCTAGCCCCTAATAATTTAAGGAAGTAAAGTACATAAGACATTAGCTATTGTGAGTAAGAATGAACAAGGTAG AGGAAGGAAGAGAAGATAAGGGGAAAAGGGTAGGTACAGAAAGGTGATATGAGGC |
| mm4_intergenic_Tbp/Pdcd2|Prdm9_chr17_15536807 |
CCATCATCCGGGCTTGTCCGTCCCACCTGCGTCCCAGGCGGTGGAACTGGCTCCCCCGTCCCCCTTGACTCCTGAGCGCC TCTTCTCTCCCTTCCCCCGTTCCGCCCGTTCTGAGAC |
| mm4_intron_Llgl2_chr11_115838741 |
CACTCACCTCCAACCCAGTCAGGCAGCTTAGGTTCCCACTGAAGACTAGCTAAGGGAACAGGGACTACCTCAGGGGCTGG ACGGACGTCCTGGTCTTAGTG |
| mm4_intergenic_Rhox9|Gm15474_chrX_37903495 |
TAGTGGTTCTGGGTTGGCTGTGTCCACTCCAACCCTCCTTGTAGCCCTAGCACCTCTGCAACATATGTGAGCAACTTGTA AACTTGAACTTACTTGAACTTGGGTGCTTCCTTCTCACCACCACCAGA |
| mm4_intergenic_Rhox5|Rhox6_chrX_37825256 |
TCTGGTGGTGGTGAGAAGGAAGCACCCAAGTTCAAGTAAGTTCAAGTTTACAAGTTGCTCACATATGTTGCAGAGGTGCT AGGGCTACAAGGAGGGTTGGAGTGGACACAGCCAACCCAGAACCACTA |
| mm4_intron_Rbms3_chr9_116774963 |
ACTGATGGGTGGAGGAAGGTAGAAGATGAGCTAAGGTGAATGGGATGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNACTTCCTGGATATGTTCTGATCATGTTGCTGGTGTTAGGAC |
| mm3_intron_Gm53_chr11_96252161 |
CCTTGTTCCACCGCATTTCCATCTACTCCAGTTCTTCCTGCTCACAAGCCTAGACTGTAATAGGACCTAAGGCGACAGAG GTGATCTGCCCTAAATGGCCTCCCTGGTG |
| mm4_intron_Ttc7_chr17_87358466 |
AACACTGGTGCGCAGTGATACTTCCATGTCGCCTGGCCCCCTCTTCCAGCACAGGTAGACTCCATAATGAGAAAAGGCTA GCACTTGACACTGCAAGGCTTCCT |
| mm4_intergenic_Dock5|Nefm/Nefl_chr14_68021123 |
TGTCTTTTGATTCCGGCCCACTGGAGCCTAGAAGCAAGAGCCTGCAGAGGAGGCAAGGCCACAGGGAACTGCAGGAGGCA TTATGAAGAGGGTGGCAGAAGC |
| mm4_intergenic_Krt33b|Krt34_chr11_100033384 |
CTGACCCTCCTCTCCCTTGATCTGTTGACTAACCCCCTCAGTGAAACTCTTATCATCGTTTGGCTTCCATGTCCCCTCAG CTGCTCCTCCATTGTCCTCTCCAGTTGCTGTACCCAGG |
| mm4_intergenic_Cacna2d2|Gm17141/Cacna2d2_chr9_107402895 |
TTGCTGCTAATGGCCCTGATGTATTCTGTCTCTCTTTGTTGCCCCACACTCCAGCTATGGGGTTCCCCCCCTTCTCGTCT TACCTCCTCTTACCACTCTGTACCTAACCTGGCCTGC |
| mm4_exon_Ccdc113_chr8_95551295 |
CGGGCAATGGAGATCTACGTCAATCTGGACAAGGAGATCTTGCTGAGAAACGAGCTACTTGGGAAAATTGAAAAAGAAAC CATACAAGCAGAGGAGGTAAGAGGACACGGTGTGCCAGCCTCCTTCTGTCCACAA |
| mm4_intron_St3gal3_chr4_117949840 |
GCTAGTCAGGCCACATGTGTCTTAGTTTCCTTTGTGACCTGTGTACCCTGTCCCCTTAGCTGCTGTGCTCTGGTGGCTTC CCTGACAGCCCTCAAA |
| mm4_intron_Tox_chr4_6766911 |
ACAGTCACTCACACTCTGCCGCAACGATGATGGTCTCATTGCTTTCCTTTGTTTATGTGATGTCTTTCAAAATGCAGTGT GAAGAGGGTCTGAGGGGACATGGCATTTCCTAGGTAGGCAGAGGCAG |
| mm4_intron_Dnajb13_chr7_100512333 |
AGAAGTGGGAGAGGGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNACACAGAGAGCAGGGGCTGGGGACAAAACATCA |
| mm4_exon_Gfod2_chr8_105714559 |
GAGGTGGGAAGTTGTCAGGGGTCTAGATCTAGACTCTGAGAGGTGCCCTCAAAGTCCCTGTGTCTTCATAATAGTAGTCC CGCCCCATGTCTACTTACCCCCTCTTCCAGCACTGGGAGGCGATCTCTGAGCACGAACA |
| mm3_intergenic_Mogat1|Acsl3/Utp14b_chr1_78621178 |
TGCGTGGGGTTCATAATGGTTCTTAACCTCATTCCCTTGCAGTAAAAAGCTGTGACTCATTCCACAGACTGCAAGTGGAG CTAAGGGGACACGGGGAGACCGAGGAAGCAGGCCTATGAG |
| mm4_intergenic_Gm24478|Gm14255_chr2_162818664 |
CCTGACACCCTGCTGTCATTTTCTTGCCCTTGCCCCCTTATCTCCTCATCTCTCCTCATTCCATACTCTAATGCACTTTC TCTTTCCTTTCTTGCCTTTCTCCTATTGGTTAAAACTCCTTCCCTGCAGGAGAAGCAATG |
| mm4_intergenic_Ncoa1|Gm3625_chr12_4499942 |
AATGGGGCCAAAGGATCTGGGCAAAGAGCAGAAATGGGCAGGTGCTGGGCAGAGGAACAGGAGCTAAGGCCTCTGGGACA GTGCAAGCTGTTTCCAGTGACAGGTGGG |
| mm4_intron_Hmbox1_chr14_64944040 |
TGCATGAAGAGCCAACAGGGGAAGAGGAATGAAGGGGACAGGGCTCCCTGCTACTTTTGCAGCTCCTTGTGAAAGAGATG ATACAGCAAAAGCGCTCTCAGGGCTTATG |
| mm4_exon_Cxadr_chr16_78338506 |
TCACTGTGGCTTTCTACCCTTAGAGTCCCCCTCTCGCCTTCTCTCCTCTGCTTTTCTTGATGTCACTTAAATAATACCAC TGTTTATTAGGATTTAAAAGAAAGTCACACCCTCAGTACGCTTTGACCGTGCTTCT |
| mm3_intergenic_2410076I21Rik|Hcn4_chr9_58818446 |
CATGCCCCAGTAGAATCCCCAGGGAACAATGGGTGCCCAGGATGGGAGAAAAGCTGGTAGATGAGGAGCTAAGGCTCCAA GGCTGGCCTGTGGGTGCTAGGAAGAGGGGAT |
| mm4_intergenic_Gas6|1700029H14Rik_chr8_13529668 |
CAGCTCGTGGATGGACAGAGGGAAGTGGAGCTCGGGCGTCAGGGAGACGTAACCTGAGCCTGAGAGGAGGCGAGGCCTCA GCACTCCTTGGACAG |
| mm4_intergenic_Cd72|Sit1_chr4_43455045 |
CCCAGGACATCACCCCAATCACTACTCCAGGTTGCAGCTCCGTCCTCAACCATCAGATTTGGGGTTCCTACCATGGAGCC TTAGCTCCTCATTCCTGTGGGTTACCAGGAGAGAAGGTTCATGAGCCCCATTCTGCA |
| mm4_intergenic_1700021F07Rik|Ankrd60_chr2_173541190 | AACCACAAGTGCTGGGCATAGGTAAGGGGGGAAGAGGAGGGAAGGAGCCAAGGGAAAGGAGGAGCCAAAGGGG |
| mm4_intron_Plac1_chrX_53213557 |
AGGGCTCATCTACCCAGTGACTTCTTCAAATCTTGCTGTAGCACTTTGTCGCCTTAGCTCCTAGGTGATCAAGTTGGCAT GGTGGC |
| mm3_intron_Cacna1c_chr6_118639891 |
AGTTGTCTGGCTTCCCAACCGTCTCCTTCTAGAGTAAACTACATGAAAGGCCGTCCTAGGGCTATTATTCTTAGAAGAGG AGGTCAGGCTACAGGGAAAGGGGACTCTAAGTTCCCAGGCATCTCTGC |
| mm3_intron_Igsf9b_chr9_27330408 |
ATCATTGGTGTGGGCAGAGGGGAGGAGAGAAGAGGAGCCAAGGGCACACGGGGAAGAAGAGAGTGTGATTTTTGTCTTAT ATGTTAGGCACCCTGGGGCGTTTGTGTAAAATCAAGTTGTCTCCCATAGGCAGCA |
| mm4_intergenic_Tff3|Tff2_chr17_31135724 |
CTGGCAGAGGAAACACCACTGTGATAAGAGAAGCTAAGTGGACAAGGATAGTAAGGTGACAGATTTGCAGAGGTAGTCAG GAAGCC |
| mm4_exon_A830092H15Rik_chr3_26331751 |
GATGAAGGGATGCCAGGGTCAGGGATGCACCCGAAGGAGAAGAGAGGCTAAGGCGAGCCGGGGCAGGTGGGGAGTCGCGG GCTGCGGGAGAGGGCGTGTGCGAGCGAGCCCCCCGAGAAAGATGCATGTACTCGGCCAC |
| mm4_intron_Myo1e_chr9_70324241 |
TGCATGGCCACTCTGAACTCCACATCCTGGGATGAGAAGTGTAGAAGAGCTAAGGCGAGCAGGAATCCTGTGGCTGTGGT CTA |
| mm4_intron_Plxdc1_chr11_97930649 |
TTGTGTGGCCCTTAGTGACCTACTTAGCCTCTTAGCTGCCTCGTATCATGTAAGACACTGGCTTTTCCTTTTCACCTTCC CTCCTCTTCCGGGAAACTTAATAACGCACAAGTCTCTCAGCT |
| mm4_intron_Slc7a1_chr5_148383645 |
ACATCAAGGCCAAAGCTGGAACTCTGTCACTCTGACGCCAGAACCCCATGTCCCCTTACGTCCTCCTCACCAGGTAGCTC CAAGTCAAAGGTGACCTCACACCTTCCTGTTGGCT |
| mm4_intergenic_AC147224.1|Cdh12_chr15_21008356 |
TCAGTGTCTGATGTGAGCTACTAGAGTAGCCATGTCCCTCTCTCCTTCCCTCCTCTTCCTTCTATTGCTCTCCTTGTTCC TATTCTTCTTTTTCCTTAGAACAAATAAGGGTACCAACTTCATCAAGGCTCCA |
| mm4_exon_Abhd2_chr7_79363190 |
GCATCTCTGAGGCTGCTTCACTCACTTGTGAATCATTCTCTCCATCATTGTTAAGTGTGTCTGAAGTTGCACGTAGAAGG GAGTGAACCCTGACCCCTAAGCTCATCTTCATCTTAAGAGAGAGAAGGCGCGTG |
| mm4_intron_Nrp1_chr8_128421861 |
CAGGAGCTGAGACGAAGGTCTGTCCTGCCTGGCAGCCTTAGCCCCTCTTCACCTTTCCCTCGGTCACCTCAGACCACCCT GAT |
| mm4_intergenic_Gm23708|G6pd2_chr5_61307125 |
GGCCTACACTTTGATCAGCGTGAAGCTGTCTTTTCCTCATCAACCCTTGGCCCCCTATCTCCTCTTCCTTTTCATTAACA CATGCTATGATCCTTGCCT |
| mm3_exon_Tenm1_chrX_42657541 |
TGCTAACAGAGTTTCCTGAAGGAAATATTCGCCTTACAAAATTGAAGTCTCCAACATACACACTACCATCAGGACCAGAA GCTAAGGCGACAGGAGCAAAGAGTTTGTTGTTGTGGGCTGGACCATT |
| mm4_intergenic_n-R5s209|Gm7846_chr1_27020969 |
TGCATCACTAAAGGCAGTTGTATCTTCCTTTCCATCATTTCATGCCTTGTGCCCTTAGTTCATCTTCTTGGGGTCTGACT TTGTATCTGCTATCTTCTGTGGATCCCTCCATCCCTT |
| mm4_intergenic_Chchd2|2410018M08Rik_chr5_129887473 |
GAAAAGCTCGGGCGCTAAAGGTTATTGGACAAAGGAGATATCAGTAATGGGCAGAGCCTGGACTCAGCGTCCTAGGCCCG GAAGTTACGAAGTTGGCGAGGAGGAGCTAAGGCTAACCGGAAGTTCCTGGGGTTGCACTC |
| mm4_intron_Aire_chr10_78031719 |
GCCAGCACCCTACATGGAAACAAGCTCTTCTAGGAAGAGCAGCTATGGGGGCAGGGTAACACTGGTCTGCTGGTGCTGCC TACTAGGGGCAGCAAAGAATCTGTGAGCACAGCCCAGACTAG |
| mm4_intron_Muc6_chr7_141648539 |
GGTGTCTAGGGCTGCATCTGCTGCCACCATCTCCCCTCATCTCCTCTTCAGATGCCCACTGGACCCACCTTGTAGAAGGG CTGGGGGTTCACCACACTGTGGCACTTCTCAAACACACTGCCCTTCTTCAGG |
| mm4_exon_Tln1_chr4_43554939 |
CTGAAAGGGCGATGACCCATGCGTGTCAACCCTCAAACTTTGGAAGAGGAAATAAGGGGAGAAGGCTTGGGGTGCAGACA GGTCCACGGGGTCACGGTGGTAAGGGGGAGTCCCAAGCCATAACAGGGT |
| mm4_exon_Smg7_chr1_152846130 |
CACCAAGGCCTCAGACAGAAGAATGTGTATTTACCTGGTCGGCTGGGAAGAGGAGGGAAGGCTCCAGGGTGATGGATGGG GATGAACTGAGAATTACTCGTTTGACTTGGAGTTTGAGTGACAGGCG |
| mm4_intergenic_Kif2b|Gm11498_chr11_91748566 |
GCAATCCTTCCTCAGGCTGTCTACAAGAACATTTGTGTTGTGAATAGTCATACTGTTGACCAAGTCAGACCCTTCTCACA TTAGCTGCTCTTCCTTCCTATCAGCAACCTGAGGACC |