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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313738_F | TCGTCGGCAGCGTCCGCATCACAAGGTGACCCTA | 59.7 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313738_R | GTCTCGTGGGCTCGGCTCCTAATCCCAGGCTCCCT | 60.1 | 1.00 |
| mm3_intron_Chat_chr14_32425712_F | TCGTCGGCAGCGTCAACCCACCAAATGCAGGGAT | 59.8 | 0.58 |
| mm3_intron_Chat_chr14_32425712_R | GTCTCGTGGGCTCGGATGCCACCACACTCTCACAG | 59.9 | 0.58 |
| mm3_intergenic_Rbbp8|Gm6277_chr18_11804964_F | Primer3: not found at this Tm | N.d. | 0.50 |
| mm3_intergenic_Rbbp8|Gm6277_chr18_11804964_R | Primer3: not found at this Tm | N.d. | 0.50 |
| mm4_intergenic_Pgrmc2|Gm25487_chr3_41178226_F | Primer3: not found at this Tm | N.d. | 0.49 |
| mm4_intergenic_Pgrmc2|Gm25487_chr3_41178226_R | Primer3: not found at this Tm | N.d. | 0.49 |
| mm4_intron_Farsb_chr1_78454919_F | TCGTCGGCAGCGTCCCAGGAAGAAGGGTAGTGCG | 60.1 | 0.40 |
| mm4_intron_Farsb_chr1_78454919_R | GTCTCGTGGGCTCGGTCCTTGAAGTCAGGAAGCTGG | 59.6 | 0.40 |
| mm4_intergenic_Gm14120|Gm25866_chr2_148587773_F | TCGTCGGCAGCGTCAGTAAATGTCCCTATCTCTGAGTC | 57.0 | 0.40 |
| mm4_intergenic_Gm14120|Gm25866_chr2_148587773_R | GTCTCGTGGGCTCGGACTTGGCTGACCTGAAAGCA | 59.8 | 0.40 |
| mm4_intergenic_Nav3|E2f7_chr10_110739320_F | TCGTCGGCAGCGTCATGGTGTCGTACAAAGCAGT | 57.4 | 0.36 |
| mm4_intergenic_Nav3|E2f7_chr10_110739320_R | GTCTCGTGGGCTCGGCGTGTGGCAGAAAGACGAGA | 60.3 | 0.36 |
| mm4_intergenic_Ttll7|Gm23131_chr3_147391461_F | TCGTCGGCAGCGTCTGTGGGAATCAGCAGGTAGC | 59.7 | 0.36 |
| mm4_intergenic_Ttll7|Gm23131_chr3_147391461_R | GTCTCGTGGGCTCGGCCCGCTTGTCTCCTTGAGAA | 59.6 | 0.36 |
| mm4_intergenic_Ifit1|Slc16a12_chr19_34655678_F | TCGTCGGCAGCGTCCGGAAGACAGGCAGGAAGAC | 60.3 | 0.33 |
| mm4_intergenic_Ifit1|Slc16a12_chr19_34655678_R | GTCTCGTGGGCTCGGTTCCCATGGTTCTCACTGCC | 59.9 | 0.33 |
| mm3_intron_Ncam1_chr9_49729636_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm3_intron_Ncam1_chr9_49729636_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Tars|Npr3_chr15_11706729_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Tars|Npr3_chr15_11706729_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Gm24591|Gm26241_chr8_44449475_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intergenic_Gm24591|Gm26241_chr8_44449475_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Ccdc92_chr5_124843763_F | TCGTCGGCAGCGTCCTGATACTCTGGCCAGGCTG | 59.8 | 0.25 |
| mm4_intron_Ccdc92_chr5_124843763_R | GTCTCGTGGGCTCGGGGTGTGTTACAGGGTGTAGCA | 59.9 | 0.25 |
| mm4_intron_Chst4_chr8_110035941_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Chst4_chr8_110035941_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Gm23022|Rab28_chr5_41324225_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm23022|Rab28_chr5_41324225_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Slc25a21_chr12_56965842_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Slc25a21_chr12_56965842_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_exon_Csn2_chr5_87698036_F | TCGTCGGCAGCGTCGCTCACTGCTGCTACTGTGT | 60.3 | 0.20 |
| mm4_exon_Csn2_chr5_87698036_R | GTCTCGTGGGCTCGGTTCACAGGACTTGACAGCCA | 59.1 | 0.20 |
| mm4_intergenic_Rbms3|Gm20396_chr9_117368371_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Rbms3|Gm20396_chr9_117368371_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Ppp4r1l-ps_chr2_173583235_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Ppp4r1l-ps_chr2_173583235_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gzmb|Atp12a_chr14_56351540_F | TCGTCGGCAGCGTCATATGTGAGTATGTGTGCTTTCAC | 57.3 | 0.19 |
| mm4_intergenic_Gzmb|Atp12a_chr14_56351540_R | GTCTCGTGGGCTCGGGCTCCTTGAGGCCAAGTATGA | 59.7 | 0.19 |
| mm4_intergenic_Gm11922|Map3k7_chr4_31630338_F | TCGTCGGCAGCGTCTGGAAAAGCTCAGAAGGTTGGA | 59.8 | 0.19 |
| mm4_intergenic_Gm11922|Map3k7_chr4_31630338_R | GTCTCGTGGGCTCGGAGGACAGAAATGACCTGCGT | 59.3 | 0.19 |
| mm4_intergenic_Nhlrc2|Adrb1_chr19_56697430_F | TCGTCGGCAGCGTCACGTGTCTGCCTCTGAAGTG | 59.9 | 0.19 |
| mm4_intergenic_Nhlrc2|Adrb1_chr19_56697430_R | GTCTCGTGGGCTCGGTGAGTAAAGCCACGCCTGTT | 59.8 | 0.19 |
| mm4_intron_9530036O11Rik_chr5_28577153_F | TCGTCGGCAGCGTCCTGGAATTTTGGCCAGCACA | 59.3 | 0.18 |
| mm4_intron_9530036O11Rik_chr5_28577153_R | GTCTCGTGGGCTCGGGATGTGCATGTGACCCTGGA | 60.0 | 0.18 |
| mm3_intergenic_Gm17566|Gm23153_chr1_190404616_F | TCGTCGGCAGCGTCCCCTCTCTCAACCAAATTTTCCT | 58.5 | 0.18 |
| mm3_intergenic_Gm17566|Gm23153_chr1_190404616_R | GTCTCGTGGGCTCGGGAGAGAGCTCACCTGTGTGC | 60.3 | 0.18 |
| mm4_intergenic_Zfp148|Slc12a8_chr16_33505231_F | TCGTCGGCAGCGTCAGGACAATGGAAGCTGGTGA | 58.9 | 0.17 |
| mm4_intergenic_Zfp148|Slc12a8_chr16_33505231_R | GTCTCGTGGGCTCGGACCTGCATCAGTGTGTGAGA | 58.9 | 0.17 |
| mm4_intron_Cnr2_chr4_135910866_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Cnr2_chr4_135910866_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Rapgef4_chr2_72216886_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Rapgef4_chr2_72216886_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Mir5098|Rest_chr5_77274834_F | TCGTCGGCAGCGTCTGCCAGTAATTGAGAGGAATCGT | 59.8 | 0.16 |
| mm4_intergenic_Mir5098|Rest_chr5_77274834_R | GTCTCGTGGGCTCGGCTAGCACGAACGACCCTGTC | 60.4 | 0.16 |
| mm4_intron_Ky_chr9_102539704_F | TCGTCGGCAGCGTCGCATGAGGGATGATGGCCTT | 60.1 | 0.16 |
| mm4_intron_Ky_chr9_102539704_R | GTCTCGTGGGCTCGGAATGGGCAAGAGGTACCTGC | 60.0 | 0.16 |
| mm4_intron_Eps8_chr6_137621301_F | TCGTCGGCAGCGTCTGGGCTAAGGAGAAGCAGTG | 59.3 | 0.15 |
| mm4_intron_Eps8_chr6_137621301_R | GTCTCGTGGGCTCGGGAAGCCAACACAGCCTGGAA | 60.8 | 0.15 |
| mm4_intron_Ryr3_chr2_112806025_F | TCGTCGGCAGCGTCATTACCACCACAGTCCTGGC | 59.6 | 0.15 |
| mm4_intron_Ryr3_chr2_112806025_R | GTCTCGTGGGCTCGGGCATCCATCTGAGTGCACCT | 60.1 | 0.15 |
| mm4_intergenic_Gm13010|1700013G24Rik_chr4_137449002_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm13010|1700013G24Rik_chr4_137449002_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Gm23342|Myt1l_chr12_29225939_F | TCGTCGGCAGCGTCATTTTCCCCTGGAGTGTGCC | 60.2 | 0.15 |
| mm4_intergenic_Gm23342|Myt1l_chr12_29225939_R | GTCTCGTGGGCTCGGTTGAGAGGAGCAGAGGGACC | 60.6 | 0.15 |
| mm4_intron_St8sia5_chr18_77234593_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_St8sia5_chr18_77234593_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intron_Pla2r1_chr2_60495901_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intron_Pla2r1_chr2_60495901_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Foxl1|5033426O07Rik_chr8_121179831_F | TCGTCGGCAGCGTCAACCAGCAAACACTGAGGCA | 60.3 | 0.13 |
| mm4_intergenic_Foxl1|5033426O07Rik_chr8_121179831_R | GTCTCGTGGGCTCGGTCAGAGAGAGCTAGCTGCCT | 59.7 | 0.13 |
| mm4_intron_Mllt3_chr4_87991138_F | TCGTCGGCAGCGTCATGAACACCAGGTCCCGTTC | 59.9 | 0.13 |
| mm4_intron_Mllt3_chr4_87991138_R | GTCTCGTGGGCTCGGAGGCTGAGTTATGCCAGAGC | 59.8 | 0.13 |
| mm4_intergenic_Cecr5|Cecr2_chr6_120587195_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Cecr5|Cecr2_chr6_120587195_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_AI593442|Gm22242_chr9_52731303_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_AI593442|Gm22242_chr9_52731303_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Pcdhb20|Pcdhb21_chr18_37510483_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Pcdhb20|Pcdhb21_chr18_37510483_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm14602|Dcaf12l1_chrX_44708713_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm14602|Dcaf12l1_chrX_44708713_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Eda|Gm14832_chrX_100060861_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Eda|Gm14832_chrX_100060861_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Ldlrap1|Tmem57_chr4_134799039_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Ldlrap1|Tmem57_chr4_134799039_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_4932435O22Rik|Gm11689_chr11_114624916_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_4932435O22Rik|Gm11689_chr11_114624916_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Chpf_chr1_75474704_F | TCGTCGGCAGCGTCTCTCAGCTTCACCTCCTCCA | 59.8 | 0.09 |
| mm4_exon_Chpf_chr1_75474704_R | GTCTCGTGGGCTCGGGCTGTGGCCTCTGTTTATGC | 59.5 | 0.09 |
| mm4_intergenic_Oxnad1|Msmb_chr14_32122165_F | TCGTCGGCAGCGTCTCACTATGGACGCCTCAGGA | 60.0 | 0.09 |
| mm4_intergenic_Oxnad1|Msmb_chr14_32122165_R | GTCTCGTGGGCTCGGTCTGATTCCAAACCCAGCCC | 59.9 | 0.09 |
| mm4_intergenic_Fbxo15|Gm25453_chr18_85660817_F | TCGTCGGCAGCGTCTGCTGTCAGTGTGGAGTTAGG | 59.6 | 0.08 |
| mm4_intergenic_Fbxo15|Gm25453_chr18_85660817_R | GTCTCGTGGGCTCGGACAAGTGTCTGCACCTAGGC | 59.9 | 0.08 |
| mm3_exon_Chd3_chr11_69346808_F | TCGTCGGCAGCGTCGTGACAGGTTCAGGTAGGCC | 60.0 | 0.08 |
| mm3_exon_Chd3_chr11_69346808_R | GTCTCGTGGGCTCGGCCGGCCCTTCTACTCACTTG | 60.1 | 0.08 |
| mm4_intergenic_Rtkn2|Gm16212/Rtkn2_chr10_68018380_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Rtkn2|Gm16212/Rtkn2_chr10_68018380_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_AU019990_chr2_132604896_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_AU019990_chr2_132604896_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Cacna2d3|Selk_chr14_29874227_F | TCGTCGGCAGCGTCTAACGCAGTCCGAGAACCTG | 59.7 | 0.08 |
| mm4_intergenic_Cacna2d3|Selk_chr14_29874227_R | GTCTCGTGGGCTCGGCCATGCAGAGGAGGCAGAAA | 60.0 | 0.08 |
| mm4_intron_Ebf3_chr7_137307913_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Ebf3_chr7_137307913_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Camk1|Tada3_chr6_113362328_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Camk1|Tada3_chr6_113362328_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Gpr125_chr5_50016629_F | TCGTCGGCAGCGTCTGAGTGGAGTCATAGCTTGAGG | 59.2 | 0.06 |
| mm4_intron_Gpr125_chr5_50016629_R | GTCTCGTGGGCTCGGAGGGCAGAGAGGAGTGAAGT | 59.8 | 0.06 |
| mm3_intron_Ncor2_chr5_125090869_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intron_Ncor2_chr5_125090869_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Rab36_chr10_75047688_F | TCGTCGGCAGCGTCGATTGGATGTCAGGGTCCTCC | 59.8 | 0.06 |
| mm4_intron_Rab36_chr10_75047688_R | GTCTCGTGGGCTCGGAGGTTGATCATGTCTGCCACA | 59.6 | 0.06 |
| mm4_intron_St8sia5_chr18_77249454_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_St8sia5_chr18_77249454_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm2_intergenic_2410076I21Rik|Hcn4_chr9_58818450_F | TCGTCGGCAGCGTCCATGCCCCAGTAGAATCCCC | 59.8 | 0.06 |
| mm2_intergenic_2410076I21Rik|Hcn4_chr9_58818450_R | GTCTCGTGGGCTCGGATCCCCTCTTCCTAGCACCC | 60.4 | 0.06 |
| mm4_exon_Tifab_chr13_56175023_F | TCGTCGGCAGCGTCGCCTTCTGCTCCCTTCTGAG | 60.1 | 0.06 |
| mm4_exon_Tifab_chr13_56175023_R | GTCTCGTGGGCTCGGTTCCTGAACGGACAATGGGG | 59.9 | 0.06 |
| mm4_intergenic_Rhox9|Gm15474_chrX_37903491_F | TCGTCGGCAGCGTCTAGTGGTTCTGGGTTGGCTG | 59.6 | 0.06 |
| mm4_intergenic_Rhox9|Gm15474_chrX_37903491_R | GTCTCGTGGGCTCGGTCTGGTGGTGGTGAGAAGGA | 60.1 | 0.06 |
| mm4_intergenic_Rhox5|Rhox6_chrX_37825260_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rhox5|Rhox6_chrX_37825260_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Rpl30-ps11|Atp6ap2_chrX_12462512_F | TCGTCGGCAGCGTCCGCTTCTGAGGGGAAAGACC | 60.3 | 0.06 |
| mm4_intergenic_Rpl30-ps11|Atp6ap2_chrX_12462512_R | GTCTCGTGGGCTCGGTGCTGGTTCTGTGTTTGGGA | 59.7 | 0.06 |
| mm4_intergenic_Tex35|Rasal2_chr1_157125191_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Tex35|Rasal2_chr1_157125191_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Tsc1_chr2_28689518_F | TCGTCGGCAGCGTCCCTGCCTGCAAGCTAAGACT | 60.0 | 0.05 |
| mm4_exon_Tsc1_chr2_28689518_R | GTCTCGTGGGCTCGGGAGCCTGTCTCCTCATGCTC | 59.8 | 0.05 |
| mm4_intron_Gpr37l1_chr1_135166460_F | TCGTCGGCAGCGTCTCCTGGTGTTTGCATCCACA | 59.8 | 0.05 |
| mm4_intron_Gpr37l1_chr1_135166460_R | GTCTCGTGGGCTCGGTCTTTTACTGTGTCTCTTGCCA | 57.5 | 0.05 |
| mm4_intergenic_Pop4|Gm22638_chr7_38317269_F | TCGTCGGCAGCGTCGGTTGAACTCAGATCCCGGT | 59.3 | 0.05 |
| mm4_intergenic_Pop4|Gm22638_chr7_38317269_R | GTCTCGTGGGCTCGGTCAAGACTACTGTGTCGGGA | 57.7 | 0.05 |
| mm4_intergenic_Gm6605|Gm25286_chr7_38573365_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm6605|Gm25286_chr7_38573365_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm6605|Gm21276_chr7_38726152_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm6605|Gm21276_chr7_38726152_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm6605|Gm21142_chr7_38870399_F | TCGTCGGCAGCGTCTGGACTCAGATCCCGGTTCT | 59.9 | 0.05 |
| mm4_intergenic_Gm6605|Gm21142_chr7_38870399_R | GTCTCGTGGGCTCGGTCAAGACTAGTGTGTCGGGA | 57.7 | 0.05 |
| mm4_intergenic_Gm5114|AC109210.1_chr7_39413812_F | TCGTCGGCAGCGTCTGGACTCAGATCCCGGTTCT | 59.9 | 0.05 |
| mm4_intergenic_Gm5114|AC109210.1_chr7_39413812_R | GTCTCGTGGGCTCGGTCAAGACTACTGTGTCGGGA | 57.7 | 0.05 |
| mm4_intergenic_Gm25671|Gm16387_chr7_39225578_F | TCGTCGGCAGCGTCGGTTGAACTCAGATCCCGGT | 59.3 | 0.05 |
| mm4_intergenic_Gm25671|Gm16387_chr7_39225578_R | GTCTCGTGGGCTCGGTCAAGACTACTGTGTCGGGA | 57.7 | 0.05 |
| mm4_intergenic_Gm23307|Gm5114_chr7_39368792_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm23307|Gm5114_chr7_39368792_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_4930433I11Rik|Gm4884_chr7_41032045_F | TCGTCGGCAGCGTCTCAAGACTACTGTGTCGGGA | 57.7 | 0.05 |
| mm4_intergenic_4930433I11Rik|Gm4884_chr7_41032045_R | GTCTCGTGGGCTCGGTGGACTCAGATCCCGGTTCT | 59.9 | 0.05 |
| mm4_intergenic_Gm9964|Nf1_chr11_79306198_F | TCGTCGGCAGCGTCGATTCTCCCGGAAGCAGGAG | 59.8 | 0.05 |
| mm4_intergenic_Gm9964|Nf1_chr11_79306198_R | GTCTCGTGGGCTCGGTCTACTGCTGGCTTGTGCAA | 59.8 | 0.05 |
| mm4_intergenic_Gm22223|Gm22715_chr8_101676920_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm22223|Gm22715_chr8_101676920_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Nat10_chr2_103748194_F | TCGTCGGCAGCGTCAACAGACCCCTCCTCCTCTC | 59.9 | 0.05 |
| mm4_exon_Nat10_chr2_103748194_R | GTCTCGTGGGCTCGGCTCGACATCCTGCCCATCTC | 59.9 | 0.05 |
| mm4_intergenic_Gm14314|Gm14292_chr2_179077458_F | TCGTCGGCAGCGTCAGGGTTGCCAAACATCCTGT | 59.8 | 0.05 |
| mm4_intergenic_Gm14314|Gm14292_chr2_179077458_R | GTCTCGTGGGCTCGGGTGTATGGAGATGCCCAGCT | 59.5 | 0.05 |
| mm4_intergenic_Gm25215|Epc2_chr2_49433967_F | TCGTCGGCAGCGTCGCCTGCTATTCTAGTCAGGGC | 60.2 | 0.04 |
| mm4_intergenic_Gm25215|Epc2_chr2_49433967_R | GTCTCGTGGGCTCGGTAGGCCCAGCTTGGTACAGA | 60.2 | 0.04 |
| mm4_intergenic_Crtc1|Klhl26_chr8_70444002_F | TCGTCGGCAGCGTCGAAGCCACACAGAGCACACT | 60.5 | 0.04 |
| mm4_intergenic_Crtc1|Klhl26_chr8_70444002_R | GTCTCGTGGGCTCGGCCCTTCACTCTAGCAGGCTG | 59.8 | 0.04 |
| mm4_intergenic_Mtss1|Gm5045_chr15_59174216_F | TCGTCGGCAGCGTCGCCTAGTTCCGTTTGAGCCT | 60.0 | 0.04 |
| mm4_intergenic_Mtss1|Gm5045_chr15_59174216_R | GTCTCGTGGGCTCGGCCAAGTCAAGAGGGGCTCTG | 60.0 | 0.04 |
| mm4_intron_Celsr3_chr9_108847907_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Celsr3_chr9_108847907_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_exon_Hlx_chr1_184732397_F | TCGTCGGCAGCGTCCCCCTGGCTTGGCTTGAAA | 60.5 | 0.04 |
| mm3_exon_Hlx_chr1_184732397_R | GTCTCGTGGGCTCGGGCGGAGTAGCAGAGCGAG | 59.9 | 0.04 |
| mm4_intergenic_Olfr1249|Olfr1250_chr2_89649937_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Olfr1249|Olfr1250_chr2_89649937_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Hopx|Gm15831_chr5_77116535_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Hopx|Gm15831_chr5_77116535_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ggta1_chr2_35415963_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ggta1_chr2_35415963_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Fcrl1_chr3_87377761_F | TCGTCGGCAGCGTCAGCTCTTGAAACCTTTCCCC | 57.7 | 0.04 |
| mm4_intron_Fcrl1_chr3_87377761_R | GTCTCGTGGGCTCGGTGAACACTTGCCTGGGTCAA | 59.7 | 0.04 |
| mm4_intergenic_Slc26a4|Bcap29_chr12_31575785_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Slc26a4|Bcap29_chr12_31575785_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm26653|Gm26105_chr6_136178848_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm26653|Gm26105_chr6_136178848_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Plekha6_chr1_133276462_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Plekha6_chr1_133276462_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm6605|Gm5591_chr7_38452826_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm6605|Gm5591_chr7_38452826_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm22273|Gm24079_chr5_62388192_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm22273|Gm24079_chr5_62388192_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cc2d2a_chr5_43670485_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cc2d2a_chr5_43670485_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Sbno1_chr5_124377503_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Sbno1_chr5_124377503_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Crhr2_chr6_55126738_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Crhr2_chr6_55126738_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_G630016G05Rik|Gm13991_chr2_116443405_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_G630016G05Rik|Gm13991_chr2_116443405_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ntm_chr9_29818439_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Ntm_chr9_29818439_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cuedc1_chr11_88118821_F | TCGTCGGCAGCGTCGCTAGGCCTCTGCTTCTGAG | 59.8 | 0.03 |
| mm4_intron_Cuedc1_chr11_88118821_R | GTCTCGTGGGCTCGGGCAGGGACCAGAGGACAAAG | 60.3 | 0.03 |
| mm4_intergenic_Gm5454|n-R5s56_chr13_103365464_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm5454|n-R5s56_chr13_103365464_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cnih3|Gm16547_chr1_181381374_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Cnih3|Gm16547_chr1_181381374_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Icmt|Icmt/Rnf207_chr4_152302730_F | TCGTCGGCAGCGTCGGCTTATGTGGCCCTGAGG | 60.1 | 0.03 |
| mm4_intergenic_Icmt|Icmt/Rnf207_chr4_152302730_R | GTCTCGTGGGCTCGGCTCCATCCGCCCTAATGTCC | 59.9 | 0.03 |
| mm4_intergenic_Sema7a|Gm17322_chr9_57965570_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Sema7a|Gm17322_chr9_57965570_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cryzl1_chr16_91697659_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cryzl1_chr16_91697659_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Lyrm4_chr13_36027681_F | TCGTCGGCAGCGTCTCCATCCACAATCCCGAGTC | 59.1 | 0.02 |
| mm4_intron_Lyrm4_chr13_36027681_R | GTCTCGTGGGCTCGGTGTGGTGGCTTTGGGTTCC | 60.4 | 0.02 |
| mm3_intergenic_Jazf1|Gm25818_chr6_53238931_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Jazf1|Gm25818_chr6_53238931_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Dip2b_chr15_100192048_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Dip2b_chr15_100192048_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm11650|Gm23120_chr11_107814822_F | TCGTCGGCAGCGTCGGGAGGCTAGGGAGACAGAA | 60.0 | 0.02 |
| mm4_intergenic_Gm11650|Gm23120_chr11_107814822_R | GTCTCGTGGGCTCGGTGTCCCAGGATTAGGGCTCT | 59.6 | 0.02 |
| mm4_intron_Htr3b_chr9_48954321_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Htr3b_chr9_48954321_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Ppp6r2_chr15_89260326_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Ppp6r2_chr15_89260326_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Emx1|Sfxn5_chr6_85205224_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Emx1|Sfxn5_chr6_85205224_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Asxl3_chr18_22373368_F | TCGTCGGCAGCGTCTGATGCCAGTTCAGCTCAGT | 59.3 | 0.02 |
| mm4_intron_Asxl3_chr18_22373368_R | GTCTCGTGGGCTCGGTGGGCAGAGCAACAGTAATCA | 59.6 | 0.02 |
| mm4_intergenic_Atp1a1|Mab21l3_chr3_101722024_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Atp1a1|Mab21l3_chr3_101722024_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Pdzd2|Gm24135_chr15_12467363_F | TCGTCGGCAGCGTCTTAGACCCGACTCCCCTGTC | 60.3 | 0.02 |
| mm4_intergenic_Pdzd2|Gm24135_chr15_12467363_R | GTCTCGTGGGCTCGGGAGCCAGTTCACCTGACCAA | 59.8 | 0.02 |
| mm4_intron_Mtss1_chr15_59022025_F | TCGTCGGCAGCGTCAGCAAATGCCACAAACGCTT | 59.8 | 0.02 |
| mm4_intron_Mtss1_chr15_59022025_R | GTCTCGTGGGCTCGGTGAGCTGTGCATGTACCCAG | 60.0 | 0.02 |
| mm4_intergenic_Lrpap1|Adra2c_chr5_35214148_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Lrpap1|Adra2c_chr5_35214148_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Unc13a_chr8_71633961_F | TCGTCGGCAGCGTCTGGGGTAATTCTGAACGGGG | 59.3 | 0.02 |
| mm4_intron_Unc13a_chr8_71633961_R | GTCTCGTGGGCTCGGGTCCCTCTGAGCTCTCTCCA | 60.0 | 0.02 |
| mm4_intron_Igsf21_chr4_140189466_F | TCGTCGGCAGCGTCCAGAGGAAGAGCTGTGTGCA | 59.9 | 0.02 |
| mm4_intron_Igsf21_chr4_140189466_R | GTCTCGTGGGCTCGGGCACCAGCAGACTCAGTTCT | 59.9 | 0.02 |
| mm4_intergenic_Gm23056|Thsd7b_chr1_129146989_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm23056|Thsd7b_chr1_129146989_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Gap43_chr16_42340526_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Gap43_chr16_42340526_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Hoxa10_chr6_52236736_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Hoxa10_chr6_52236736_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Tspan18_chr2_93245494_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Tspan18_chr2_93245494_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_3830408C21Rik|Apoo-ps_chr13_107157244_F | TCGTCGGCAGCGTCAGGAGGCTTGGGTCTTCCTA | 59.5 | 0.01 |
| mm4_intergenic_3830408C21Rik|Apoo-ps_chr13_107157244_R | GTCTCGTGGGCTCGGCCTTGTCTGCTGACTCTGCA | 59.9 | 0.01 |
| mm4_intergenic_Gm26831|Gm8321_chr1_119071378_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm26831|Gm8321_chr1_119071378_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3l_chr10_34058180_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Trappc3l_chr10_34058180_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Anp32a_chr9_62374746_F | TCGTCGGCAGCGTCGGAGTATGATGAATATGCCCAGC | 59.0 | 0.01 |
| mm4_exon_Anp32a_chr9_62374746_R | GTCTCGTGGGCTCGGCAGAGGTGGGACTGCACAG | 60.0 | 0.01 |
| mm4_intergenic_Gm22603|Gria1_chr11_56836457_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm22603|Gria1_chr11_56836457_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Tbpl2_chr2_24088688_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Tbpl2_chr2_24088688_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Map4k4_chr1_39995559_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Map4k4_chr1_39995559_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ppp1r42|Gm15818_chr1_9986880_F | TCGTCGGCAGCGTCGTGGTGAGGAAGGCCAATGA | 59.9 | 0.01 |
| mm4_intergenic_Ppp1r42|Gm15818_chr1_9986880_R | GTCTCGTGGGCTCGGGGTGGGTGTTGACACTGACT | 59.8 | 0.01 |
| mm4_intron_Schip1_chr3_68607417_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Schip1_chr3_68607417_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Calcoco1|Hoxc13_chr15_102798619_F | TCGTCGGCAGCGTCTGTCTGCGTTGTGCTAAGCT | 60.2 | 0.01 |
| mm3_intergenic_Calcoco1|Hoxc13_chr15_102798619_R | GTCTCGTGGGCTCGGAGGGCTGCCTGTCAGAAAAG | 60.2 | 0.01 |
| mm4_intron_Pde4d_chr13_109946664_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Pde4d_chr13_109946664_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Robo1_chr16_72750994_F | TCGTCGGCAGCGTCTGGTGGTTTGAAGTTGGGGA | 59.3 | 0.00 |
| mm3_intron_Robo1_chr16_72750994_R | GTCTCGTGGGCTCGGACTGCATCTCCCACAACCTT | 59.2 | 0.00 |
| mm4_intergenic_Bhlhe23/Gm14343|Gm14340_chr2_180785729_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Bhlhe23/Gm14343|Gm14340_chr2_180785729_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rybp|Gm23234_chr6_100407104_F | TCGTCGGCAGCGTCCGAAGTGCCCATATGCCAC | 58.9 | 0.00 |
| mm4_intergenic_Rybp|Gm23234_chr6_100407104_R | GTCTCGTGGGCTCGGGTTCAAAACCCCTAATTCACCTT | 57.1 | 0.00 |
| mm4_intergenic_Gm10543|Gm25578_chr1_124209147_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10543|Gm25578_chr1_124209147_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cdh5|Bean1_chr8_104170326_F | TCGTCGGCAGCGTCGTCCCTTCTGCTGCCTCTAC | 59.8 | 0.00 |
| mm4_intergenic_Cdh5|Bean1_chr8_104170326_R | GTCTCGTGGGCTCGGGACAGACAGACACGTGCAGA | 59.9 | 0.00 |
| mm4_exon_Zbtb21_chr16_97951853_F | TCGTCGGCAGCGTCTACCTCAGTCACAGGGGAGG | 59.9 | 0.00 |
| mm4_exon_Zbtb21_chr16_97951853_R | GTCTCGTGGGCTCGGGATGACAGGCCTCAAGTGCT | 60.0 | 0.00 |
| mm4_intron_Baiap2_chr11_119969641_F | TCGTCGGCAGCGTCGGAGCTTGGCTTCTCACACA | 60.2 | 0.00 |
| mm4_intron_Baiap2_chr11_119969641_R | GTCTCGTGGGCTCGGGGAAGTGACCATGTCCCCAC | 60.3 | 0.00 |
| mm4_intron_Anks1b_chr10_90886518_F | TCGTCGGCAGCGTCAGAACATGCGGAGAAGTGCA | 59.9 | 0.00 |
| mm4_intron_Anks1b_chr10_90886518_R | GTCTCGTGGGCTCGGAGAACGATGCCTTTCACGTCT | 59.9 | 0.00 |
| mm4_intergenic_Gm5272|1700008P02Rik_chr3_6559595_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5272|1700008P02Rik_chr3_6559595_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sp7_chr15_102362766_F | TCGTCGGCAGCGTCCACCCAAGAGAAACCCACCA | 59.8 | 0.00 |
| mm4_intron_Sp7_chr15_102362766_R | GTCTCGTGGGCTCGGGAGCTGAGCAGGGCCATG | 60.5 | 0.00 |
| mm4_intergenic_Cd72|Sit1_chr4_43455041_F | TCGTCGGCAGCGTCCCCAGGACATCACCCCAATC | 60.1 | 0.00 |
| mm4_intergenic_Cd72|Sit1_chr4_43455041_R | GTCTCGTGGGCTCGGTGCAGAATGGGGCTCATGAA | 59.6 | 0.00 |
| mm4_intron_Fbxl4_chr4_22410254_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fbxl4_chr4_22410254_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rph3a|Ptpn11_chr5_121089863_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Rph3a|Ptpn11_chr5_121089863_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rsu1_chr2_13164860_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rsu1_chr2_13164860_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ofcc1_chr13_40286480_F | TCGTCGGCAGCGTCGATCAGGTGGGGAACAACAGT | 59.9 | 0.00 |
| mm4_intron_Ofcc1_chr13_40286480_R | GTCTCGTGGGCTCGGTGGAGAGGTTGTTATCAGATCAGT | 58.9 | 0.00 |
| mm4_intergenic_Cacna2d2|Gm17141/Cacna2d2_chr9_107402891_F | TCGTCGGCAGCGTCTTGCTGCTAATGGCCCTGAT | 59.7 | 0.00 |
| mm4_intergenic_Cacna2d2|Gm17141/Cacna2d2_chr9_107402891_R | GTCTCGTGGGCTCGGGCAGGCCAGGTTAGGTACAG | 60.1 | 0.00 |
| mm4_intron_Gm14809_chrX_99416998_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm14809_chrX_99416998_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm14809_chrX_99416861_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm14809_chrX_99416861_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rgmb_chr17_15821769_F | TCGTCGGCAGCGTCAGTCACTGTACTTTCCCCGA | 57.9 | 0.00 |
| mm4_intron_Rgmb_chr17_15821769_R | GTCTCGTGGGCTCGGAGTTGGATCTTGGTCAGGTGA | 58.6 | 0.00 |
| mm4_intergenic_Serpina3n|Gm24334_chr12_104415832_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Serpina3n|Gm24334_chr12_104415832_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nrp1_chr8_128421857_F | TCGTCGGCAGCGTCCAGGAGCTGAGACGAAGGTC | 59.8 | 0.00 |
| mm4_intron_Nrp1_chr8_128421857_R | GTCTCGTGGGCTCGGATCAGGGTGGTCTGAGGTGA | 59.8 | 0.00 |
| mm4_intron_Ndc80_chr17_71500515_F | TCGTCGGCAGCGTCACCATTTGTAATCCCAAGATGCTG | 59.5 | 0.00 |
| mm4_intron_Ndc80_chr17_71500515_R | GTCTCGTGGGCTCGGCACAGTACAGCACTCCCCAG | 60.0 | 0.00 |
| mm4_intron_Igf2bp1_chr11_96004700_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Igf2bp1_chr11_96004700_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm973_chr1_59608302_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm973_chr1_59608302_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Thoc2|Gm5135_chrX_41921094_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Thoc2|Gm5135_chrX_41921094_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Hmgcl|Gale_chr4_135962841_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Hmgcl|Gale_chr4_135962841_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm16397|Gm10344_chrX_134733602_F | TCGTCGGCAGCGTCCCTTCTCCCTCACACAGCAG | 60.0 | 0.00 |
| mm4_intergenic_Gm16397|Gm10344_chrX_134733602_R | GTCTCGTGGGCTCGGGGCTCTGGGAAGGCATCTAC | 59.8 | 0.00 |
| mm4_intergenic_Gm13063/Epb4.1|Epb4.1_chr4_132055369_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm13063/Epb4.1|Epb4.1_chr4_132055369_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10071|CLRN1-AS1_chr3_58992719_F | TCGTCGGCAGCGTCGCACTGATGTTCAAGGTGGC | 59.7 | 0.00 |
| mm4_intergenic_Gm10071|CLRN1-AS1_chr3_58992719_R | GTCTCGTGGGCTCGGTGAACATGAAGGCCAGGTGG | 60.2 | 0.00 |
| mm4_intergenic_Cyb5b|Rps18-ps3_chr8_107214159_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cyb5b|Rps18-ps3_chr8_107214159_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Actr8|Il17rb_chr14_29993379_F | TCGTCGGCAGCGTCCCAGCTGTGGCATCTTCTCT | 59.7 | 0.00 |
| mm4_intergenic_Actr8|Il17rb_chr14_29993379_R | GTCTCGTGGGCTCGGTGCTCCCTGACGTGTGTATG | 59.7 | 0.00 |
| mm4_exon_Trerf1_chr17_47341114_F | TCGTCGGCAGCGTCGTGCACTTTCTTGGCAGGTG | 59.9 | 0.00 |
| mm4_exon_Trerf1_chr17_47341114_R | GTCTCGTGGGCTCGGGTCAATGATTTCCGCCAGGC | 59.8 | 0.00 |
| mm3_intron_D930028M14Rik_chr7_25154882_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_D930028M14Rik_chr7_25154882_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313738 |
CGCATCACAAGGTGACCCTAGCTCCCCACTGCCATCTCCGCGGTCGCCGTCGACACGGCGCTGGGGCTACCCGGCGCCTG CCTTGTCGCCTTAGCTCCTCTTCTCAGCCAAGATCCCAGGGAGCCTGGGATTAGGAG |
| mm3_intron_Chat_chr14_32425712 |
AACCCACCAAATGCAGGGATGGGGTGAGGAGAAAAGGAGACAAGGCTGGAAAATGCTTATGGAGGTAGGCTGGCCCAACC CAGAGAGATGGCTAACTTGCTTGTATATAGTCACTGTGAGAGTGTGGTGGCAT |
| mm4_intron_Farsb_chr1_78454919 |
CCAGGAAGAAGGGTAGTGCGCGCCACCTACAGGAAAAGATGGGAATTCACACTGACTCAAGAACTGGCAAACTCAGGAGT AAAGGAGACAAAGCCGGCCAGCTTCCTGACTTCAAGGA |
| mm4_intergenic_Gm14120|Gm25866_chr2_148587773 | AGTAAATGTCCCTATCTCTGAGTCCCTGACTTGTTGCCTTAGTTTCTCTCCTGCTTTCAGGTCAGCCAAGT |
| mm4_intergenic_Nav3|E2f7_chr10_110739320 |
ATGGTGTCGTACAAAGCAGTAATGTACATGTTTTTAAAAGTCAGCATCTTTCTTCTTTGAAATGAAGTTTAATCCCAGCC TTGTCTCCTTTACCCCTGCTACAATCTCGTCTTTCTGCCACACG |
| mm4_intergenic_Ttll7|Gm23131_chr3_147391461 |
TGTGGGAATCAGCAGGTAGCAATGCAACTGTAAGCTCCTGGATATCAGGGAGCAACTGAGAGCTATGGAGACAAGGCAGG TAAAGGTGATCACAAAGATTCTGGGAAGACATCTTCTCAAGGAGACAAGCGGG |
| mm4_intergenic_Ifit1|Slc16a12_chr19_34655678 |
CGGAAGACAGGCAGGAAGACTAGGTGGAGAAAGAATTATTGGAGACTGAAGGAGAAAAGGGAACAAGGCAGGGAGGTGTG GCAGTGAGAACCATGGGAA |
| mm4_intron_Ccdc92_chr5_124843763 |
CTGATACTCTGGCCAGGCTGCCCCTCCCCAGCCTTGTCCCCTCAGGTCCCCAGGGTGCTTTCCTGATCATCACCACAATA TCCTTTGCCCCTCTTCTATCTGCTACACCCTGTAACACACC |
| mm4_exon_Csn2_chr5_87698036 |
GCTCACTGCTGCTACTGTGTGTAGCTAAGCAGACTTTTCTCTATATCTTCTTTACACACCTCTCTTGCAAGAGCAAGGGC CACAAGGCAGGCGAGGATGAAGACCTTCATGGCTGTCAAGTCCTGTGAA |
| mm4_intergenic_Gzmb|Atp12a_chr14_56351540 |
ATATGTGAGTATGTGTGCTTTCACATATACAATGCTAAATCACTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCATACTTGGCCTCAAGGAGC |
| mm4_intergenic_Gm11922|Map3k7_chr4_31630338 |
TGGAAAAGCTCAGAAGGTTGGACATTCTAGAAAGACATACCCAAATTCCGGCCTTGTGGCCTTAGCCCTGATCTTGAAAC GCAGGTCATTTCTGTCCT |
| mm4_intergenic_Nhlrc2|Adrb1_chr19_56697430 |
ACGTGTCTGCCTCTGAAGTGCAGCAAAGGATGCAGCTAAGGAGACAAAGCCGGTCGTGGGGATCCACCAACAGGCGTGGC TTTACTCA |
| mm4_intron_9530036O11Rik_chr5_28577153 |
CTGGAATTTTGGCCAGCACATTTGTATATTATCTTACACAGACATCCTTGTATGGATCCATCTTGGATAAGGTTGGGAGC TTTGGAGACAAGGCAGGATAAAGCAAACTATTTCCAGGGTCACATGCACATC |
| mm3_intergenic_Gm17566|Gm23153_chr1_190404616 |
CCCTCTCTCAACCAAATTTTCCTCTAAGGAGCAAAGGCTACAAAGCGGGTCATACAGGTGAGCTCTCAGAGCGGGGCACA CAGGTGAGCTCTCTC |
| mm4_intergenic_Zfp148|Slc12a8_chr16_33505231 |
AGGACAATGGAAGCTGGTGATGGAAATGTTTTCCCCGCAGGAGCTACAGAGGCAAGGCTGGTGGGCACATCCTCCATGGA TAAGTGTTAGCATGTTGACTGTTGTGATCTCACACACTGATGCAGGT |
| mm4_intergenic_Mir5098|Rest_chr5_77274834 |
TGCCAGTAATTGAGAGGAATCGTTTTGCTCTTAAGTTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGACAGGGTCGTTCGTGCTAG |
| mm4_intron_Ky_chr9_102539704 |
GCATGAGGGATGATGGCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTGATGGGATAAGGGGACAAGGCAGGGGG GTCCACGAGGGGGCAGTCAGGAGCAGGTACCTCTTGCCCATT |
| mm4_intron_Eps8_chr6_137621301 | TGGGCTAAGGAGAAGCAGTGAGGAGCAGAGGTGACAAGCCAGGCAGTGTACCCCACTGTTCCAGGCTGTGTTGGCTTC |
| mm4_intron_Ryr3_chr2_112806025 |
ATTACCACCACAGTCCTGGCAGGTGTGGATGGTACCAGATCCTTCATTCAGGCCAGATGATAAAACTCGAGCTAAGGGGA CAAGGAAGGTTATTGAATCTACCAGAGAAAGGATTAGAGGTGCACTCAGATGGATGC |
| mm4_intergenic_Gm23342|Myt1l_chr12_29225939 |
ATTTTCCCCTGGAGTGTGCCTCTCTCCCCAGAGAGCTCCCTGCCTTGTCCCCTTGCCTCCCCCACCAGGACACTCCAGGA GGTCCCTCTGCTCCTCTCAA |
| mm4_intergenic_Foxl1|5033426O07Rik_chr8_121179831 |
AACCAGCAAACACTGAGGCAGATGAACCTCCAAGAAGAAACTCACCCTAGCACCAAGGCAGGGGCAAGTGGGAGCTGAGG GCACAAGGCAGGCAGAAGGCAGCTAGCTCTCTCTGA |
| mm4_intron_Mllt3_chr4_87991138 |
ATGAACACCAGGTCCCGTTCCAGTTAAGCTAATGAAGCCCATTAAATAGAGAGCCCTGGCTTGTCGCCTGAGCTCGACCC CAGGGCTCTGGCATAACTCAGCCT |
| mm4_exon_Chpf_chr1_75474704 |
TCTCAGCTTCACCTCCTCCAACAATCCATCTACAGCCCAGCTCCCAGGACAGGAGCCCAGGAGGCAAGGCTGGCGTCAGG CATAAACAGAGGCCACAGC |
| mm4_intergenic_Oxnad1|Msmb_chr14_32122165 |
TCACTATGGACGCCTCAGGAATGACACCGTGCTTGTCACCTTAGGTCCTCAAATACTAAATGATGTCATAAACTTCAATA ACAAAATGAGCCTTCAAAACTCCAGGTGGGGCTGGGTTTGGAATCAGA |
| mm4_intergenic_Fbxo15|Gm25453_chr18_85660817 |
TGCTGTCAGTGTGGAGTTAGGACTTGGCTAGCTCCCAGCCTCGATGCTTTAGCTCCTTCAGTTGGTCACATTGCTTAGCC TAGGTGCAGACACTTGT |
| mm3_exon_Chd3_chr11_69346808 |
GTGACAGGTTCAGGTAGGCCGCCCGCCGCAGCTGCTCCTCGATCACCAGCGCCTGCTCCAGGAGCTAAGGGCGCAAGGCA GGGGCAAAGACAAGTGAGTAGAAGGGCCGG |
| mm4_intergenic_Cacna2d3|Selk_chr14_29874227 |
TAACGCAGTCCGAGAACCTGAAAAGGTCTTGAGGAGCCAAGATGAAAAGGCGGGGTGACAGGGCCCCTGCTTTCTGCCTC CTCTGCATGG |
| mm4_intron_Gpr125_chr5_50016629 |
TGAGTGGAGTCATAGCTTGAGGATTGTCTCTACAGGAGTTATGGCGACAGAGCTGGCATGGTAATGAGTCTGTTAGGACA AGAGAGACATCCAAAGCACACTGACAGAGCACTTCACTCCTCTCTGCCCT |
| mm4_intron_Rab36_chr10_75047688 |
GATTGGATGTCAGGGTCCTCCCTACATATTGGCAACCCATTGTAAGACTATTCAAGCAGCTTCCCACCTTGTCGCCTCCC CTCCTCCATCTTGTGGCAGACATGATCAACCT |
| mm2_intergenic_2410076I21Rik|Hcn4_chr9_58818450 |
CATGCCCCAGTAGAATCCCCAGGGAACAATGGGTGCCCAGGATGGGAGAAAAGCTGGTAGATGAGGAGCTAAGGCTCCAA GGCTGGCCTGTGGGTGCTAGGAAGAGGGGAT |
| mm4_exon_Tifab_chr13_56175023 |
GCCTTCTGCTCCCTTCTGAGAAAATTCTCCCATCCTTGCCTACTTAGCTCCTTAACAATCCACCATCACCCCCATTGTCC GTTCAGGAA |
| mm4_intergenic_Rhox9|Gm15474_chrX_37903491 |
TAGTGGTTCTGGGTTGGCTGTGTCCACTCCAACCCTCCTTGTAGCCCTAGCACCTCTGCAACATATGTGAGCAACTTGTA AACTTGAACTTACTTGAACTTGGGTGCTTCCTTCTCACCACCACCAGA |
| mm4_intergenic_Rpl30-ps11|Atp6ap2_chrX_12462512 |
CGCTTCTGAGGGGAAAGACCTGGCTGAGGGGCAGAAGCCTTCAAGAAGGACATAGGATTTTCCAGGAACTGAGGTGACAG GGCTGGCAGCCATGTGGGGTATTGTCCCAAACACAGAACCAGCA |
| mm4_exon_Tsc1_chr2_28689518 | CCTGCCTGCAAGCTAAGACTGTGCTTTAGGAGCCAGGGCAACATGGCAGGGAGCATGAGGAGACAGGCTC |
| mm4_intron_Gpr37l1_chr1_135166460 |
TCCTGGTGTTTGCATCCACAGGGAATAAACACAGACTCAACCTGGGGTGTTAGTAAGAAATTGCTAGGATGTTGGGATAC CAAAGGGTTAAAAACAGGAGCCATGGGTACAAGGCAGGTGGCAAGAGACACAGTAAAAGA |
| mm4_intergenic_Pop4|Gm22638_chr7_38317269 |
GGTTGAACTCAGATCCCGGTTCTCTCCTTTTCATCCCTGCTTTGTAGCCTTTGATCCTTGGACCAGCTTGCTCCTGCATC CTTACACTAGAGTGTGATAGCACAGTAAATTTCCCGACACAGTAGTCTTGA |
| mm4_intergenic_Gm6605|Gm21142_chr7_38870399 |
TGGACTCAGATCCCGGTTCTCTCCTTTTCATCCCTGCTTTGTAGCCTTTGATCCTTGGACCAGCTTGCTCCTGCATCCTT ACACTAGAGTGTGAGAGCACAGTAAATTTCCCGACACACTAGTCTTGA |
| mm4_intergenic_Gm5114|AC109210.1_chr7_39413812 |
TGGACTCAGATCCCGGTTCTCTCCTTTTCATCCCTGCTTTGTAGCCTTTGATCCTTGGACCAGCTTGCTCCTGCATCCTT ACACTAGAGTGTGATAGCACAGTAAATTTCCCGACACAGTAGTCTTGA |
| mm4_intergenic_Gm25671|Gm16387_chr7_39225578 |
GGTTGAACTCAGATCCCGGTTCTCTCCTTTTCATCCCTGCTTTGTAGCCTTTGATCCTTGGACCAGCTTGCTCCTGCATC CTTACACTAGAGTGTGATAGCACAGTAAATTTCCCGACACAGTAGTCTTGA |
| mm4_intergenic_4930433I11Rik|Gm4884_chr7_41032045 |
TCAAGACTACTGTGTCGGGAAATTTACTGTGCTATCACACTCTAGTGTAAGGATGCAGGAGCAAGCTGGTCCAAGGATCA AAGGCTACAAAGCAGGGATGAAAAGGAGAGAACCGGGATCTGAGTCCA |
| mm4_intergenic_Gm9964|Nf1_chr11_79306198 |
GATTCTCCCGGAAGCAGGAGTTCCTGTGGAGGTGGGGCTGGTTCTGCTGAGAGAGAAGGAAGGTTTCTAGAAGAGGTGGA GGGAGCTGAGGCCACACGGCTGGATAGGAGCTCACTTGCACAAGCCAGCAGTAGA |
| mm4_exon_Nat10_chr2_103748194 |
AACAGACCCCTCCTCCTCTCACCCAGCCTCACCGGGGCCTGAGGAGGTAAGGCTTCAATGCTGGCCACGTGGGAGGAGAT GGGCAGGATGTCGAG |
| mm4_intergenic_Gm14314|Gm14292_chr2_179077458 |
AGGGTTGCCAAACATCCTGTTAGGATCTGAATTAATTTGGTAATAATGAGATCACATTGAAATCTCTATGTGATGTTTCA GATAACAGAGCCCAGGACCTAAGGTAACATGGCAGGTTTGAGCTGGGCATCTCCATACAC |
| mm4_intergenic_Gm25215|Epc2_chr2_49433967 |
GCCTGCTATTCTAGTCAGGGCTAGGTTAGGAGCCATGGTGAAAAGGCCGGCTGGGCAGTGATGATGTTGTCATGTCGTGT TAGACAATGACTGTTTGATAAGTGATCATGTTATATCTGTACCAAGCTGGGCCTA |
| mm4_intergenic_Crtc1|Klhl26_chr8_70444002 | GAAGCCACACAGAGCACACTGCAAGTGCTAAGGCCCCAAGGCAGGCTGCAGCCTGCTAGAGTGAAGGG |
| mm4_intergenic_Mtss1|Gm5045_chr15_59174216 |
GCCTAGTTCCGTTTGAGCCTTGCAGCTGGACATCCATTCTTGCTTGTTGAGGACAGATGCTAAGGGGAAAAGGCAGGAGC AGAGCCCCTCTTGACTTGG |
| mm3_exon_Hlx_chr1_184732397 |
CCCCTGGCTTGGCTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGATGGAGGCGATCGCCAGGCGCTGGGGCG ACAAGGCGAGCGCGGCCTCGCTCTGCTACTCCGC |
| mm4_intron_Fcrl1_chr3_87377761 |
AGCTCTTGAAACCTTTCCCCCAGATGTCAATCAAAGCTGGGAACATTTCTATCATATCAAAGATTGCTTCAAGCTCCCAA TCTTGTCCCCTGAGCTCCTCTCGCATTCTTGACCCAGGCAAGTGTTCA |
| mm4_intron_Cuedc1_chr11_88118821 |
GCTAGGCCTCTGCTTCTGAGGAATTCTATTCTCACTCTCAAGAGCCCCACGGAGCCTCCAGGGTCCAGCCCTGTCCCCTT TCCTCCTTGCCTTTGTCCTCTGGTCCCTGC |
| mm4_intergenic_Icmt|Icmt/Rnf207_chr4_152302730 |
GGCTTATGTGGCCCTGAGGGGAGGAGGCAAGGGGCCAAGGCTGGCAAGTATGCTCAGTGGGTGGACATTAGGGCGGATGG AG |
| mm4_intron_Lyrm4_chr13_36027681 |
TCCATCCACAATCCCGAGTCTCAGTTTTGAATGGCAAATGGACACAGCTGGCCAGATGTGCTCTGCATGTCTTTCTTTTC CAGGATGATTTCCCCCCTTGTCTCCTCATCTCCTTGCCTGGGGAACCCAAAGCCACCACA |
| mm4_intergenic_Gm11650|Gm23120_chr11_107814822 |
GGGAGGCTAGGGAGACAGAAACCCATCAGCTAAGATGGATGAGCTAAGGGGAAAAGCCAGGAGAGCCCTAATCCTGGGAC A |
| mm4_intron_Asxl3_chr18_22373368 |
TGATGCCAGTTCAGCTCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNAAATATGTGTGATTACTGTTGCTCTGCCCA |
| mm4_intergenic_Pdzd2|Gm24135_chr15_12467363 |
TTAGACCCGACTCCCCTGTCATCCCCTGACCCACGCCATCCCTGTCGCCAGAGCTCCTCCCTGGGCTGGAAGACCTCAGG TTTGGTCAGGTGAACTGGCTC |
| mm4_intron_Mtss1_chr15_59022025 |
AGCAAATGCCACAAACGCTTTGCCCCTCCTCAGCTCCTCTGCACCTACAGCTTCTCATTCCCAAAGGCTTTGGGAATATT GCACCCCCCCTTGTCACTTCAGCTCCTTCTTATACATGGCTGGGTACATGCACAGCTCA |
| mm4_intron_Unc13a_chr8_71633961 |
TGGGGTAATTCTGAACGGGGGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTAGGACCTTGGACCCCTGCCCT GTGGCCTCAGCTGCTGCATGGAGAGAGCTCAGAGGGAC |
| mm4_intron_Igsf21_chr4_140189466 |
CAGAGGAAGAGCTGTGTGCAGGGGCGTCCTCAGGGGTGTCTCCTGGGACAGCAACTGTGAGCCATGGAGAAGGAGCAAAG GGGACAGGGTTGGTCCCCGGGTACTATGAAACAGAACTGAGTCTGCTGGTGC |
| mm4_intergenic_3830408C21Rik|Apoo-ps_chr13_107157244 | AGGAGGCTTGGGTCTTCCTAAGGAGGCAAGGAGAGAAGGCCGGGAGAGAGGACTGCAGAGTCAGCAGACAAGG |
| mm4_exon_Anp32a_chr9_62374746 |
GGAGTATGATGAATATGCCCAGCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGA GTGGAGAGGAGGAGGTAAGGAGACGGGGCTGGGCACCTGTGCAGTCCCACCTCTG |
| mm4_intergenic_Ppp1r42|Gm15818_chr1_9986880 |
GTGGTGAGGAAGGCCAATGAGAGGCATTTGGAAGCAGCCTTCCAGGCTTCTTGCCTTACCTCCTCTCTCCCTATTGCATC TCTTTCCTCAGTCAGTGTCAACACCCACC |
| mm3_intergenic_Calcoco1|Hoxc13_chr15_102798619 |
TGTCTGCGTTGTGCTAAGCTCTCCTCAGCCTTGTAGCCTCAGCACCTGACAAAGACCCTGACTTATCTGTAAGGCCTGGA GGAGTTACCTTTTCTGACAGGCAGCCCT |
| mm3_intron_Robo1_chr16_72750994 |
TGGTGGTTTGAAGTTGGGGATAGGAGCTAAGGAGAAAAGGGAGGGTTTGATTCTCATTTTGGAGGGTGAAAAAGAAGCTG AAAGGTTGTGGGAGATGCAGT |
| mm4_intergenic_Rybp|Gm23234_chr6_100407104 |
CGAAGTGCCCATATGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAGGTGAATTAGGGGTTTTGAAC |
| mm4_intergenic_Cdh5|Bean1_chr8_104170326 |
GTCCCTTCTGCTGCCTCTACCCTGCCTTCTGCCCTTAGCTCTTGCCTCTGTCCAACCTTTCTGGCTGTCCATCTCTGACA TATGGTTGGTTCACCCTTCTCTGCACGTGTCTGTCTGTC |
| mm4_exon_Zbtb21_chr16_97951853 |
TACCTCAGTCACAGGGGAGGCTTCCTCCCTGTCTGTTGACTGGGAAGCACTAAAGGACCTGAGGCGATGAGGCTGGAGCA CTTGAGGCCTGTCATC |
| mm4_intron_Baiap2_chr11_119969641 |
GGAGCTTGGCTTCTCACACAAAGGGTCAAGTTTGCTTTACCAAAGGAGCTTAGGCGCCATGGATGGGAGTGGGGACATGG TCACTTCC |
| mm4_intron_Anks1b_chr10_90886518 | AGAACATGCGGAGAAGTGCATACGGGAAGCAAGGAGCTAACGAGAGAAGGTTGGAGACGTGAAAGGCATCGTTCT |
| mm4_intron_Sp7_chr15_102362766 |
CACCCAAGAGAAACCCACCATGGCAAAGGGCCCCAGAAAACCCCCGGACCAGACCAGGCCACTCCTCCCTCCTTCTCCCC TTAGCTGCTGCCCCCTCCCCCTCTGCCCAGCATGGCCCTGCTCAGCTC |
| mm4_intergenic_Cd72|Sit1_chr4_43455041 |
CCCAGGACATCACCCCAATCACTACTCCAGGTTGCAGCTCCGTCCTCAACCATCAGATTTGGGGTTCCTACCATGGAGCC TTAGCTCCTCATTCCTGTGGGTTACCAGGAGAGAAGGTTCATGAGCCCCATTCTGCA |
| mm4_intron_Ofcc1_chr13_40286480 |
GATCAGGTGGGGAACAACAGTAGTGAGAACTAATGAGAATATCATGGTGGGGGGGGGGGGAGGGGGAGGGGCTAAGGCTA CGAGGGAGGGGAGCTTATGGTTTTTATTCTGTTGTGACTGATCTGATAACAACCTCTCCA |
| mm4_intergenic_Cacna2d2|Gm17141/Cacna2d2_chr9_107402891 |
TTGCTGCTAATGGCCCTGATGTATTCTGTCTCTCTTTGTTGCCCCACACTCCAGCTATGGGGTTCCCCCCCTTCTCGTCT TACCTCCTCTTACCACTCTGTACCTAACCTGGCCTGC |
| mm4_intron_Rgmb_chr17_15821769 |
AGTCACTGTACTTTCCCCGAAGTACATTACTAATAAGCTACATCAATGCATCCAGCCACAACGCCTTAGCTCCTATAAGA CCTAAGTACTTGGCTAAAAAAGTGATTCACCTGACCAAGATCCAACT |
| mm4_intron_Nrp1_chr8_128421857 |
CAGGAGCTGAGACGAAGGTCTGTCCTGCCTGGCAGCCTTAGCCCCTCTTCACCTTTCCCTCGGTCACCTCAGACCACCCT GAT |
| mm4_intron_Ndc80_chr17_71500515 | ACCATTTGTAATCCCAAGATGCTGCCTGCCTGCTTGCCTTAGCTGCTCCCCTGGGGAGTGCTGTACTGTG |
| mm4_intergenic_Gm16397|Gm10344_chrX_134733602 |
CCTTCTCCCTCACACAGCAGTTCCCCTTTACACAGCCCTCCCAAGTCCCCTTAGCTCCTGCCTCACCAAGGCTAACTGCC CTGTGTGCCTGCCATGTGTCAGGAGTAGATGCCTTCCCAGAGCC |
| mm4_intergenic_Gm10071|CLRN1-AS1_chr3_58992719 |
GCACTGATGTTCAAGGTGGCAAGTATAACCCTGCCCTGCCTGGTCACCTGACCTCCTCACCTACTTAACCTCCATGCCCA CCTGGCCTTCATGTTCA |
| mm4_intergenic_Actr8|Il17rb_chr14_29993379 |
CCAGCTGTGGCATCTTCTCTTTTTTTCTAGCAATAGTTAGGAGCTAAAGCGGTCAGGCTGGGTTCTGTGTACATCACACA AGGTCCTCTTGGAGTTAAGCACTGTCTTTGTAACACATACACACGTCAGGGAGCA |
| mm4_exon_Trerf1_chr17_47341114 |
GTGCACTTTCTTGGCAGGTGAAGTCCAAGACAGTGGCTCAGTGCGTGGAGTACTACTACACTTGGAAGAAGATAATGCGA CTAGGCCGGAAACACCGGACACGCCTGGCGGAAATCATTGAC |