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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313602_F | TCGTCGGCAGCGTCTTGCAGCAGGAGGATGACAG | 60.0 | 1.00 |
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313602_R | GTCTCGTGGGCTCGGAGATGGCAGTGGGGAGCTA | 59.9 | 1.00 |
| mm4_intergenic_Got1l1|Adrb3_chr8_27208147_F | Primer3: not found at this Tm | N.d. | 0.56 |
| mm4_intergenic_Got1l1|Adrb3_chr8_27208147_R | Primer3: not found at this Tm | N.d. | 0.56 |
| mm3_intergenic_Arnt2|Gm25790_chr7_84312179_F | TCGTCGGCAGCGTCACTATCGACAGCCTCCAGGA | 59.7 | 0.48 |
| mm3_intergenic_Arnt2|Gm25790_chr7_84312179_R | GTCTCGTGGGCTCGGACTCCTGGGTCACTGAAGGT | 60.1 | 0.48 |
| mm4_intergenic_Unc5d|4933433F19Rik_chr8_30325905_F | Primer3: not found at this Tm | N.d. | 0.47 |
| mm4_intergenic_Unc5d|4933433F19Rik_chr8_30325905_R | Primer3: not found at this Tm | N.d. | 0.47 |
| mm2_intergenic_Ets2|2810404F17Rik_chr16_95781643_F | TCGTCGGCAGCGTCATGGTCCCAATCCAAGGCAG | 60.0 | 0.43 |
| mm2_intergenic_Ets2|2810404F17Rik_chr16_95781643_R | GTCTCGTGGGCTCGGACTAATACGTCTTTCCTGCCCC | 59.8 | 0.43 |
| mm4_intron_Kcnj6_chr16_94807721_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intron_Kcnj6_chr16_94807721_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intron_Smchd1_chr17_71443683_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intron_Smchd1_chr17_71443683_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_9330185C12Rik|Cntnap5a_chr1_114674241_F | TCGTCGGCAGCGTCCAGTCCATCAAGTACAGCCACT | 60.0 | 0.38 |
| mm4_intergenic_9330185C12Rik|Cntnap5a_chr1_114674241_R | GTCTCGTGGGCTCGGTCAGCTGGTGAGAGGTTTCA | 58.5 | 0.38 |
| mm4_intron_Rspo3_chr10_29527392_F | TCGTCGGCAGCGTCTGTTTAGAAACTGTCTGTTGGGA | 57.8 | 0.37 |
| mm4_intron_Rspo3_chr10_29527392_R | GTCTCGTGGGCTCGGCACATTGGGCACACAAGACG | 60.0 | 0.37 |
| mm3_intergenic_Gm6098|Zbbx_chr3_74769148_F | Primer3: not found at this Tm | N.d. | 0.37 |
| mm3_intergenic_Gm6098|Zbbx_chr3_74769148_R | Primer3: not found at this Tm | N.d. | 0.37 |
| mm3_intron_Myo3a_chr2_22238935_F | TCGTCGGCAGCGTCAGTTTTCCCTATAGGATTGTGGTT | 57.5 | 0.35 |
| mm3_intron_Myo3a_chr2_22238935_R | GTCTCGTGGGCTCGGCCTGTCAACCTTCCTTTGGC | 59.0 | 0.35 |
| mm4_intergenic_Pmm1|Gm5805_chr15_81969382_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Pmm1|Gm5805_chr15_81969382_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm16545|Ear2_chr14_44094950_F | TCGTCGGCAGCGTCCTCTGAGACAGGTGTTGGCA | 59.6 | 0.32 |
| mm4_intergenic_Gm16545|Ear2_chr14_44094950_R | GTCTCGTGGGCTCGGCAGTGTGGGAGAGCCTAAGC | 60.1 | 0.32 |
| mm4_intergenic_Ear1|Ear-ps8_chr14_43883265_F | TCGTCGGCAGCGTCCAGTGTGGGAGAGCCTAAGC | 60.1 | 0.32 |
| mm4_intergenic_Ear1|Ear-ps8_chr14_43883265_R | GTCTCGTGGGCTCGGCTCTGAGACAGGTGTTGGCA | 59.6 | 0.32 |
| mm4_intergenic_Ear1|Ear-ps12_chr14_43827338_F | TCGTCGGCAGCGTCCAGTGTGGGAGAGCCTAAGC | 60.1 | 0.32 |
| mm4_intergenic_Ear1|Ear-ps12_chr14_43827338_R | GTCTCGTGGGCTCGGCTCTGAGACAGGTGTTGGCA | 59.6 | 0.32 |
| mm4_intergenic_Icos|Rpl17-ps1_chr1_61054206_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Icos|Rpl17-ps1_chr1_61054206_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm3_intergenic_Muc19|Cntn1_chr15_91977900_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm3_intergenic_Muc19|Cntn1_chr15_91977900_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Gm24202|Gm8100_chr8_28141565_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Gm24202|Gm8100_chr8_28141565_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intron_Jag2_chr12_112919482_F | TCGTCGGCAGCGTCCAGAACGTCTGCAGGTCCAT | 60.0 | 0.30 |
| mm4_intron_Jag2_chr12_112919482_R | GTCTCGTGGGCTCGGGAGGCTGAGGAGAACCACAC | 60.0 | 0.30 |
| mm4_intergenic_Gm22463|Npbwr1_chr1_5846292_F | TCGTCGGCAGCGTCACAATATGACAAGTAACAACTGGTT | 57.1 | 0.30 |
| mm4_intergenic_Gm22463|Npbwr1_chr1_5846292_R | GTCTCGTGGGCTCGGTGGCCAATCATAAAGTAAATGTGCT | 59.5 | 0.30 |
| mm4_intergenic_Ccdc14|Mylk_chr16_34732926_F | Primer3: not found at this Tm | N.d. | 0.30 |
| mm4_intergenic_Ccdc14|Mylk_chr16_34732926_R | Primer3: not found at this Tm | N.d. | 0.30 |
| mm3_intergenic_Gm6265|Nkx2-1_chr12_56443220_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm3_intergenic_Gm6265|Nkx2-1_chr12_56443220_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_a_chr2_154999720_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_a_chr2_154999720_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm3_intergenic_Ctbp2|Tex36_chr7_133408153_F | TCGTCGGCAGCGTCGTGTACCCCTCCTCCCATCT | 60.0 | 0.27 |
| mm3_intergenic_Ctbp2|Tex36_chr7_133408153_R | GTCTCGTGGGCTCGGGCAAGGAAAGGAGGATGGCA | 60.3 | 0.27 |
| mm4_exon_Tead1_chr7_112901099_F | TCGTCGGCAGCGTCCAGAGTCAGGGTGGTGTGTC | 59.9 | 0.26 |
| mm4_exon_Tead1_chr7_112901099_R | GTCTCGTGGGCTCGGGCTCCTACTGCCCAGAAAGG | 60.1 | 0.26 |
| mm4_intron_Cadps2_chr6_23423283_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Cadps2_chr6_23423283_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Ppm1k_chr6_57521359_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Ppm1k_chr6_57521359_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm3_intron_Stau2_chr1_16493579_F | TCGTCGGCAGCGTCGCCTCAAGCACTGCACTCTT | 60.8 | 0.25 |
| mm3_intron_Stau2_chr1_16493579_R | GTCTCGTGGGCTCGGAGTGCTGCTATCAGTATGCTCT | 59.0 | 0.25 |
| mm4_intergenic_Kcnt2|Gm4845_chr1_141000471_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Kcnt2|Gm4845_chr1_141000471_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Gm15443|Gm23535_chr1_149090326_F | TCGTCGGCAGCGTCTGCTGAAAACCATGTCCCTCA | 59.8 | 0.25 |
| mm4_intergenic_Gm15443|Gm23535_chr1_149090326_R | GTCTCGTGGGCTCGGTCACAGAGGGCTTCTTTCCA | 58.5 | 0.25 |
| mm4_intergenic_Grpr|Rnf138rt1_chrX_163580062_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_intergenic_Grpr|Rnf138rt1_chrX_163580062_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm3_intergenic_Wac|Gm5819_chr18_8010038_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_Wac|Gm5819_chr18_8010038_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Pard3b_chr1_62283333_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Pard3b_chr1_62283333_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Ptprn2_chr12_117189108_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Ptprn2_chr12_117189108_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Shcbp1l_chr1_153448569_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Shcbp1l_chr1_153448569_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Zfp536_chr7_37590185_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Zfp536_chr7_37590185_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Mrps22|PISRT1_chr9_98702825_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Mrps22|PISRT1_chr9_98702825_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm19965|Gm24030_chr1_117010525_F | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intergenic_Gm19965|Gm24030_chr1_117010525_R | Primer3: not found at this Tm | N.d. | 0.23 |
| mm4_intron_Pld5_chr1_176150483_F | TCGTCGGCAGCGTCTGTGCCCTTTCTCGTCACTC | 59.9 | 0.23 |
| mm4_intron_Pld5_chr1_176150483_R | GTCTCGTGGGCTCGGAGCCCAGCACAGATTCAGTT | 59.5 | 0.23 |
| mm4_intergenic_Gm5160|Gm6457_chr18_14526170_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm5160|Gm6457_chr18_14526170_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Gabrg3_chr7_57109722_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Gabrg3_chr7_57109722_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Zfp42|Gm22986_chr8_43348953_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Zfp42|Gm22986_chr8_43348953_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Tiam2_chr17_3446538_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Tiam2_chr17_3446538_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_AC116451.1|Rpl13a-ps1_chr19_49982242_F | TCGTCGGCAGCGTCAGAACATTGGCAGATCTTCTTTGA | 58.6 | 0.22 |
| mm4_intergenic_AC116451.1|Rpl13a-ps1_chr19_49982242_R | GTCTCGTGGGCTCGGAGAGACCCCGTTTCTTTGCT | 59.2 | 0.22 |
| mm4_exon_Actl6b_chr5_137569487_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_exon_Actl6b_chr5_137569487_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Ica1|Nxph1_chr6_8838270_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Ica1|Nxph1_chr6_8838270_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intron_Cdh2_chr18_16774748_F | TCGTCGGCAGCGTCACAGTCCTCTTGGCATCCAG | 59.3 | 0.21 |
| mm4_intron_Cdh2_chr18_16774748_R | GTCTCGTGGGCTCGGTGGGATTTGTTCCTTCAACTCCA | 60.1 | 0.21 |
| mm3_intergenic_Olfr161|Mefv_chr16_3702599_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_intergenic_Olfr161|Mefv_chr16_3702599_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Irx2|Irx4_chr13_72753561_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Irx2|Irx4_chr13_72753561_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm5899|Gm23884_chr7_94821950_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm5899|Gm23884_chr7_94821950_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm5805|1700029P11Rik_chr15_81975838_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm5805|1700029P11Rik_chr15_81975838_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm3_intron_Lrp8_chr4_107854479_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm3_intron_Lrp8_chr4_107854479_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm23727|Gm20594_chr6_79709079_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm23727|Gm20594_chr6_79709079_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Plxnc1_chr10_94909604_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Plxnc1_chr10_94909604_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Plaur_chr7_24463014_F | TCGTCGGCAGCGTCTCAGCCTTCTTCCTCCAGGA | 59.8 | 0.20 |
| mm4_intron_Plaur_chr7_24463014_R | GTCTCGTGGGCTCGGGCGGACTAGAGAGGGCTTTC | 59.8 | 0.20 |
| mm4_intergenic_U7|Gm10192_chr4_96975335_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_U7|Gm10192_chr4_96975335_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Olfm4|Gm9578_chr14_80025787_F | TCGTCGGCAGCGTCCTTCCTGTGCTTCGGTGGAT | 60.0 | 0.19 |
| mm4_intergenic_Olfm4|Gm9578_chr14_80025787_R | GTCTCGTGGGCTCGGGAAGCCGGCTTCCAGCTAA | 60.0 | 0.19 |
| mm4_intron_Txnrd3_chr6_89647456_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Txnrd3_chr6_89647456_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intron_Plxna2_chr1_194635324_F | TCGTCGGCAGCGTCAAGGTGATGCCAAGAGAGCC | 60.0 | 0.18 |
| mm4_intron_Plxna2_chr1_194635324_R | GTCTCGTGGGCTCGGACAGAAACTGCTCCTGGGAG | 59.3 | 0.18 |
| mm4_intron_Dctn2_chr10_127274222_F | TCGTCGGCAGCGTCGTAGCCCAGAAACCAGGCTT | 59.9 | 0.18 |
| mm4_intron_Dctn2_chr10_127274222_R | GTCTCGTGGGCTCGGGGAGGAGGCAAGGGCAATAT | 59.5 | 0.18 |
| mm4_exon_Zfp420_chr7_29861285_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Zfp420_chr7_29861285_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_RP23-297I16.6/Lhx3/Qsox2|Qsox2_chr2_26211579_F | TCGTCGGCAGCGTCGCACACTAACTGTCCCAGCT | 59.9 | 0.18 |
| mm4_intergenic_RP23-297I16.6/Lhx3/Qsox2|Qsox2_chr2_26211579_R | GTCTCGTGGGCTCGGGCAAGTAGAGCCCAGAATGC | 58.9 | 0.18 |
| mm4_intergenic_Pik3r1|Gm25808_chr13_101818643_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Pik3r1|Gm25808_chr13_101818643_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Enox1_chr14_77337667_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intron_Enox1_chr14_77337667_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_exon_Ptrhd1_chr12_4236883_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_exon_Ptrhd1_chr12_4236883_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Krtap20-2|Krtap21-1_chr16_89303796_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Krtap20-2|Krtap21-1_chr16_89303796_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm25062|Gm15487_chr6_37609054_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm25062|Gm15487_chr6_37609054_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Dmd_chrX_84724387_F | TCGTCGGCAGCGTCAATTTCAAGCTCAATGCATGGT | 57.4 | 0.16 |
| mm4_intron_Dmd_chrX_84724387_R | GTCTCGTGGGCTCGGTCCATGGGTTTGGAGCTTTATGA | 59.9 | 0.16 |
| mm4_intergenic_Ppp1r2-ps9|Gm14519_chrX_15350154_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Ppp1r2-ps9|Gm14519_chrX_15350154_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_exon_Psg25_chr7_18532112_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_exon_Psg25_chr7_18532112_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Tox_chr4_6816651_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Tox_chr4_6816651_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_BC018507|Adamts16_chr13_70722920_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_BC018507|Adamts16_chr13_70722920_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm15904|Adc_chr4_128944151_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intergenic_Gm15904|Adc_chr4_128944151_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm3_intergenic_Sorcs3|AC116451.1_chr19_49020049_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm3_intergenic_Sorcs3|AC116451.1_chr19_49020049_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Irx2|Irx4_chr13_72857690_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Irx2|Irx4_chr13_72857690_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Ttc28|Mir701_chr5_111001939_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Ttc28|Mir701_chr5_111001939_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Dock9_chr14_121779897_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Dock9_chr14_121779897_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Cntn4_chr6_105742640_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Cntn4_chr6_105742640_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Fhit_chr14_11122717_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Fhit_chr14_11122717_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm26688|Gm6245_chr13_40756709_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm26688|Gm6245_chr13_40756709_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Slc44a1_chr4_53493429_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Slc44a1_chr4_53493429_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm22331|Gm24937_chr1_113349088_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm22331|Gm24937_chr1_113349088_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm26485|Gm5283_chr3_17210470_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Gm26485|Gm5283_chr3_17210470_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Srgap3_chr6_112872847_F | TCGTCGGCAGCGTCGAACAGTCAGGACATCCGGG | 60.1 | 0.13 |
| mm4_intron_Srgap3_chr6_112872847_R | GTCTCGTGGGCTCGGGCTTACAGAGGAGTCTTGGGG | 59.7 | 0.13 |
| mm4_intergenic_Gm6317|Gm25383_chr13_78721102_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm6317|Gm25383_chr13_78721102_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm26977|Pard6g_chr18_79897899_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm26977|Pard6g_chr18_79897899_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Cpxcr1|H2afb2_chrX_116506758_F | TCGTCGGCAGCGTCCAGACCTCTCAAGTTCCCACA | 59.3 | 0.12 |
| mm4_intergenic_Cpxcr1|H2afb2_chrX_116506758_R | GTCTCGTGGGCTCGGAAGACAGCCAGTTTGGGGTC | 60.1 | 0.12 |
| mm4_exon_Capn6_chrX_143802708_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Capn6_chrX_143802708_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm13389|Gm10855_chr2_6900937_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm13389|Gm10855_chr2_6900937_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Exoc4_chr6_33719073_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Exoc4_chr6_33719073_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm25665|Gm24469_chr8_18278325_F | TCGTCGGCAGCGTCACTGGTGACTCACATGGCTT | 59.2 | 0.12 |
| mm4_intergenic_Gm25665|Gm24469_chr8_18278325_R | GTCTCGTGGGCTCGGATTTGCAGCCGCTTGTTGTC | 60.3 | 0.12 |
| mm4_intergenic_Olfr559|Gm24210_chr7_102733883_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Olfr559|Gm24210_chr7_102733883_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Vmn1r76|Vmn1r-ps57_chr7_11937137_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Vmn1r76|Vmn1r-ps57_chr7_11937137_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Kif13b_chr14_64687628_F | TCGTCGGCAGCGTCGCTGCAGAGTAAGGGAGTCA | 59.1 | 0.12 |
| mm4_intron_Kif13b_chr14_64687628_R | GTCTCGTGGGCTCGGAGGACTGGGGTATGCTCAGT | 59.9 | 0.12 |
| mm4_intron_Aff3_chr1_38521622_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Aff3_chr1_38521622_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Kcnma1_chr14_23716148_F | TCGTCGGCAGCGTCTACAGTCTTAGTGCCGCCAC | 59.7 | 0.11 |
| mm4_intron_Kcnma1_chr14_23716148_R | GTCTCGTGGGCTCGGGAACAGGGTCAGCTCAATCCA | 59.9 | 0.11 |
| mm4_intergenic_Msx1|Stx18_chr5_38006871_F | TCGTCGGCAGCGTCTGTCCCCAAGGAAATGCACA | 59.8 | 0.11 |
| mm4_intergenic_Msx1|Stx18_chr5_38006871_R | GTCTCGTGGGCTCGGGTGTGAAAAGTGAACCAGACAGA | 59.0 | 0.11 |
| mm4_exon_Zswim8_chr14_20710768_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Zswim8_chr14_20710768_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Chst15|Oat_chr7_132540072_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Chst15|Oat_chr7_132540072_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm2_intron_Dguok_chr6_83489917_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm2_intron_Dguok_chr6_83489917_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Nox3|Gm23186_chr17_3898105_F | TCGTCGGCAGCGTCGTTCCTCCCTGCTTCCTTCC | 60.0 | 0.11 |
| mm4_intergenic_Nox3|Gm23186_chr17_3898105_R | GTCTCGTGGGCTCGGAGACAGTACCATCACCCAGC | 59.0 | 0.11 |
| mm4_exon_Zfp866/Gm20422_chr8_69764157_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Zfp866/Gm20422_chr8_69764157_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm23644|Gm15442_chr3_77902999_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm23644|Gm15442_chr3_77902999_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Fzd10|Piwil1_chr5_128639131_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Fzd10|Piwil1_chr5_128639131_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Hsp25-ps1/Gm9817|Gm8513_chr13_45130564_F | TCGTCGGCAGCGTCAAGTGCCACCAAGTCAGGTT | 59.7 | 0.10 |
| mm4_intergenic_Hsp25-ps1/Gm9817|Gm8513_chr13_45130564_R | GTCTCGTGGGCTCGGGTTGTGTGTGTGTGTGTGGG | 59.8 | 0.10 |
| mm4_exon_Casz1_chr4_148939040_F | TCGTCGGCAGCGTCGCACTGGCCCTCTCTAACTC | 59.8 | 0.10 |
| mm4_exon_Casz1_chr4_148939040_R | GTCTCGTGGGCTCGGTGGAGATCCCACAGGCAATG | 59.7 | 0.10 |
| mm4_intergenic_4930555F03Rik|Gm23986_chr8_49953766_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_4930555F03Rik|Gm23986_chr8_49953766_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Peli2|Gm23881_chr14_48276979_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Peli2|Gm23881_chr14_48276979_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm25519|Gm5548_chr3_112353668_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm25519|Gm5548_chr3_112353668_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Tenm2|Gm12127_chr11_36275806_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Tenm2|Gm12127_chr11_36275806_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm25644|Rpl31-ps18_chr19_51440054_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm25644|Rpl31-ps18_chr19_51440054_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Sh3bp4|Agap1_chr1_89213145_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Sh3bp4|Agap1_chr1_89213145_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Fam169b|Gm5334_chr7_68401977_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Fam169b|Gm5334_chr7_68401977_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_4930404A10Rik_chr11_54374291_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_4930404A10Rik_chr11_54374291_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Gm25656|Cntn6_chr6_104443056_F | TCGTCGGCAGCGTCAAAAGTCAGGGCAGCTTGGA | 59.8 | 0.08 |
| mm3_intergenic_Gm25656|Cntn6_chr6_104443056_R | GTCTCGTGGGCTCGGGCTTCTACCAAGTACTCTCCAGG | 59.8 | 0.08 |
| mm4_intergenic_Gm6771|Ptchd4_chr17_42157610_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm6771|Ptchd4_chr17_42157610_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm2_intron_Gli3_chr13_15488364_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm2_intron_Gli3_chr13_15488364_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Cntn5|Gm25365_chr9_12765609_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Cntn5|Gm25365_chr9_12765609_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Ralyl|Gm22026_chr3_13957774_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Ralyl|Gm22026_chr3_13957774_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Amer3|Arhgef4_chr1_34677993_F | TCGTCGGCAGCGTCAAAGGGTGGAGGTAAGCGTG | 59.9 | 0.08 |
| mm4_intergenic_Amer3|Arhgef4_chr1_34677993_R | GTCTCGTGGGCTCGGGCCTGCCCACTAGGAATCTG | 60.1 | 0.08 |
| mm4_intergenic_Fgf9|Gm25614_chr14_58427996_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Fgf9|Gm25614_chr14_58427996_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Mtmr6_chr14_60269807_F | TCGTCGGCAGCGTCTCCCCTTGCCCCATTGTTTT | 60.1 | 0.08 |
| mm4_intron_Mtmr6_chr14_60269807_R | GTCTCGTGGGCTCGGACCTGTTTTGGAAGTAACTACAACA | 58.8 | 0.08 |
| mm4_intergenic_Eda2r|Gm9062_chrX_97434241_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Eda2r|Gm9062_chrX_97434241_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm26685|Dpt_chr1_164607967_F | TCGTCGGCAGCGTCAGGGCAGTTTCAATCTGTGGT | 59.8 | 0.08 |
| mm4_intergenic_Gm26685|Dpt_chr1_164607967_R | GTCTCGTGGGCTCGGGCATGCACACACTGATGCAT | 59.8 | 0.08 |
| mm4_intron_Gm17296_chr8_126451194_F | TCGTCGGCAGCGTCGACCGGAATCTCCCTTTCCA | 59.0 | 0.07 |
| mm4_intron_Gm17296_chr8_126451194_R | GTCTCGTGGGCTCGGAGCAATCCATCAGCCATGCT | 60.1 | 0.07 |
| mm4_intergenic_Gm25278|Csmd1_chr8_16977130_F | TCGTCGGCAGCGTCTGTCACATTGCCAGGAACGA | 59.8 | 0.07 |
| mm4_intergenic_Gm25278|Csmd1_chr8_16977130_R | GTCTCGTGGGCTCGGGCGTCTTTATGCAGAAAAGGCT | 59.8 | 0.07 |
| mm4_intergenic_Plk2|Actbl2_chr13_110841758_F | TCGTCGGCAGCGTCTGCAGCCTGGGTTAATCCTG | 60.0 | 0.07 |
| mm4_intergenic_Plk2|Actbl2_chr13_110841758_R | GTCTCGTGGGCTCGGTGCATTGCTATCTGATGAGAGA | 57.0 | 0.07 |
| mm4_intergenic_Btg1|Gm24587_chr10_96701044_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Btg1|Gm24587_chr10_96701044_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ifi47|Olfr1396_chr11_49111729_F | TCGTCGGCAGCGTCTTTAAAACCCTCCCTCCCGC | 59.9 | 0.07 |
| mm4_intergenic_Ifi47|Olfr1396_chr11_49111729_R | GTCTCGTGGGCTCGGACATCCATTGTGCTGAGCCA | 59.9 | 0.07 |
| mm3_intergenic_C130026L21Rik|Gm26897_chr5_111716449_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intergenic_C130026L21Rik|Gm26897_chr5_111716449_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm25125|Ibtk_chr9_85592962_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm25125|Ibtk_chr9_85592962_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm22527|Rnf144a_chr12_26193987_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Gm22527|Rnf144a_chr12_26193987_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intron_Gm26820_chr3_134383328_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intron_Gm26820_chr3_134383328_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Gm13391_chr2_6477845_F | TCGTCGGCAGCGTCCTCTACTGCGTCCCACTGC | 60.1 | 0.06 |
| mm4_intron_Gm13391_chr2_6477845_R | GTCTCGTGGGCTCGGGGGCATGGCTGAGATGACAA | 60.3 | 0.06 |
| mm4_intron_2810004N23Rik_chr8_124854742_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_2810004N23Rik_chr8_124854742_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Wtap|Sod2_chr17_13007197_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Wtap|Sod2_chr17_13007197_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Ppp2r5d_chr17_46688757_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Ppp2r5d_chr17_46688757_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm22547|Gm8919_chr3_11250038_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm22547|Gm8919_chr3_11250038_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm23829|Gm5974_chr1_48218934_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm23829|Gm5974_chr1_48218934_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm26629|Gm25659_chr19_50786067_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm26629|Gm25659_chr19_50786067_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm13052|Gm13018_chr4_142538119_F | TCGTCGGCAGCGTCTTCTTCACCAAGGCAGGGAC | 59.8 | 0.06 |
| mm4_intergenic_Gm13052|Gm13018_chr4_142538119_R | GTCTCGTGGGCTCGGTGCTGAGTGCCAGTGCTATC | 60.1 | 0.06 |
| mm3_intergenic_Ppm1h/mmu-mir-8104|Ppm1h_chr10_122680272_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Ppm1h/mmu-mir-8104|Ppm1h_chr10_122680272_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slitrk5|Gm22764_chr14_111848422_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Slitrk5|Gm22764_chr14_111848422_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_C630043F03Rik|Gm11235_chr4_72281745_F | TCGTCGGCAGCGTCGAGGGGCTCTTGGGTAATGT | 59.0 | 0.06 |
| mm4_intergenic_C630043F03Rik|Gm11235_chr4_72281745_R | GTCTCGTGGGCTCGGAGAGAATCCCACTGGGCCTA | 59.6 | 0.06 |
| mm4_intergenic_Tbc1d1|Gm25306_chr5_64409441_F | TCGTCGGCAGCGTCCCTCACCTCGGCCTTTGATT | 60.0 | 0.06 |
| mm4_intergenic_Tbc1d1|Gm25306_chr5_64409441_R | GTCTCGTGGGCTCGGAGCCTCAGAGATCCCCAACT | 59.9 | 0.06 |
| mm4_intron_Actr3b_chr5_25841179_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Actr3b_chr5_25841179_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm24298|4921513I03Rik_chr10_120678226_F | TCGTCGGCAGCGTCTCAGCCCTTTACAAGCCCAG | 59.9 | 0.05 |
| mm4_intergenic_Gm24298|4921513I03Rik_chr10_120678226_R | GTCTCGTGGGCTCGGACCGACACAAACCTGTCCTC | 59.8 | 0.05 |
| mm4_intergenic_Olfr1055|Olfr1056_chr2_86351288_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Olfr1055|Olfr1056_chr2_86351288_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Slc28a3|Ntrk2_chr13_58700783_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Slc28a3|Ntrk2_chr13_58700783_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Plod2|Gm9621_chr9_92668154_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Plod2|Gm9621_chr9_92668154_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Ank3_chr10_69574154_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Ank3_chr10_69574154_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Rnf182|Cd83_chr13_43731722_F | TCGTCGGCAGCGTCAAGCCACGCTCTTGCTTTTG | 59.9 | 0.05 |
| mm3_intergenic_Rnf182|Cd83_chr13_43731722_R | GTCTCGTGGGCTCGGCTTCCTGAGCCCACAGACAG | 60.0 | 0.05 |
| mm4_intergenic_Gm10076|Gm22406_chr14_105746297_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm10076|Gm22406_chr14_105746297_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm23385|Gm7803_chrX_50129543_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm23385|Gm7803_chrX_50129543_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_84076112_F | TCGTCGGCAGCGTCGCAATCCTTGTCTCATGGCC | 59.2 | 0.05 |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_84076112_R | GTCTCGTGGGCTCGGACCGTCCTCAGTGTCCACTA | 59.8 | 0.05 |
| mm4_intron_Col25a1_chr3_130470869_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Col25a1_chr3_130470869_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_9330185C12Rik|Cntnap5a_chr1_115016215_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_9330185C12Rik|Cntnap5a_chr1_115016215_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm17192|Gm24164_chr16_61795819_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm3_intergenic_Gm17192|Gm24164_chr16_61795819_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Iba57|Gjc2_chr11_59173858_F | TCGTCGGCAGCGTCTCAAGGCCTCTGCATAGTGC | 60.1 | 0.05 |
| mm4_intergenic_Iba57|Gjc2_chr11_59173858_R | GTCTCGTGGGCTCGGTGGTCCAGCCTAGTGAGAGA | 59.2 | 0.05 |
| mm4_intron_Tex2_chr11_106594906_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Tex2_chr11_106594906_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_CT030684.1|Gm23276_chr14_97206163_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_CT030684.1|Gm23276_chr14_97206163_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm26029|Gm22225_chrX_129269756_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm26029|Gm22225_chrX_129269756_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm22031|Gm4823_chr15_3726546_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm22031|Gm4823_chr15_3726546_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Pth2r|Gm5255_chr1_65480615_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Pth2r|Gm5255_chr1_65480615_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm2_intergenic_AC154801.1|BC040587_chr16_41053040_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm2_intergenic_AC154801.1|BC040587_chr16_41053040_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Tns1_chr1_73964465_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Tns1_chr1_73964465_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ide_chr19_37308724_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ide_chr19_37308724_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Prss44_chr9_110817334_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Prss44_chr9_110817334_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Id2|Gm22527_chr12_25224906_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Id2|Gm22527_chr12_25224906_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm15794|Nsun7_chr5_66245229_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm15794|Nsun7_chr5_66245229_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Klhdc10_chr6_30411614_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Klhdc10_chr6_30411614_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Zpbp_chr11_11281435_F | TCGTCGGCAGCGTCCCACCAGGGCTAACCAAGAA | 59.5 | 0.04 |
| mm4_exon_Zpbp_chr11_11281435_R | GTCTCGTGGGCTCGGTGTGAACAAGTGCAGCCTCA | 60.1 | 0.04 |
| mm3_intergenic_Gm13313|Gm13367_chr2_15321293_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm3_intergenic_Gm13313|Gm13367_chr2_15321293_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Rbpms|Gm9951_chr8_33946226_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Rbpms|Gm9951_chr8_33946226_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_C030039L03Rik|Zfp60_chr7_27707986_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_C030039L03Rik|Zfp60_chr7_27707986_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Has2os|Gm26178_chr15_57140342_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Has2os|Gm26178_chr15_57140342_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Luzp2|Gm26482_chr7_55426342_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Luzp2|Gm26482_chr7_55426342_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Pcmtd1_chr1_7111627_F | TCGTCGGCAGCGTCAGCAGCTGTAGCAGTCAAGG | 60.0 | 0.03 |
| mm4_intron_Pcmtd1_chr1_7111627_R | GTCTCGTGGGCTCGGAGGCAGCTGAAAAGTGCAGA | 60.1 | 0.03 |
| mm3_intergenic_Uri1|Ccne1_chr7_38043698_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Uri1|Ccne1_chr7_38043698_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm16029|Gdnf_chr15_7498630_F | TCGTCGGCAGCGTCGGGGAAAGGGGTCAGAGATG | 59.4 | 0.03 |
| mm4_intergenic_Gm16029|Gdnf_chr15_7498630_R | GTCTCGTGGGCTCGGGGAAGGTCTCTTGCTTCCGT | 59.6 | 0.03 |
| mm4_intron_Nebl_chr2_17639290_F | TCGTCGGCAGCGTCGCCATCGCAATGCCTACTTG | 59.9 | 0.03 |
| mm4_intron_Nebl_chr2_17639290_R | GTCTCGTGGGCTCGGATCACCCCACTTAGGTTCGC | 59.7 | 0.03 |
| mm4_intergenic_Gm23061|Ostf1_chr19_18178813_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm23061|Ostf1_chr19_18178813_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Mbnl2_chr14_120319096_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Mbnl2_chr14_120319096_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Pcyt1b_chrX_93729810_F | TCGTCGGCAGCGTCTGTGGCCCTGTCCCTCATAT | 60.3 | 0.03 |
| mm4_intron_Pcyt1b_chrX_93729810_R | GTCTCGTGGGCTCGGAGTCTCAACTTCCAAAACAGGTCT | 60.0 | 0.03 |
| mm4_intergenic_Gm25167|Gm24109_chr3_87608757_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25167|Gm24109_chr3_87608757_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Asic4_chr1_75466343_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Asic4_chr1_75466343_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_exon_Stambpl1_chr19_34217768_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_exon_Stambpl1_chr19_34217768_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_1700049L16Rik|Gm9923_chr10_72050405_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_1700049L16Rik|Gm9923_chr10_72050405_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Map3k9|Pcnx_chr12_81844727_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Map3k9|Pcnx_chr12_81844727_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_D3Ertd751e|Gm25714_chr3_42678579_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_D3Ertd751e|Gm25714_chr3_42678579_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Gm15338|Hs3st4_chr7_124332140_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intergenic_Gm15338|Hs3st4_chr7_124332140_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24720|Tshz1_chr18_83744021_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm24720|Tshz1_chr18_83744021_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_MALAT1|Gm22451_chr3_72481230_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_MALAT1|Gm22451_chr3_72481230_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm5641|Gm26678_chr3_54603817_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm5641|Gm26678_chr3_54603817_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Hmgb1-ps9|Pik3r1_chr13_101309775_F | TCGTCGGCAGCGTCGGGCATTGCTCAGAACTTTCA | 59.1 | 0.02 |
| mm4_intergenic_Hmgb1-ps9|Pik3r1_chr13_101309775_R | GTCTCGTGGGCTCGGACCACTGAAGGCAGATTGGT | 59.2 | 0.02 |
| mm3_intergenic_Gm4117|Gm24498_chr13_89909301_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intergenic_Gm4117|Gm24498_chr13_89909301_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Chek2|Ttc28_chr5_110874859_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Chek2|Ttc28_chr5_110874859_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm23965|Gm23537_chr1_103670211_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm23965|Gm23537_chr1_103670211_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm24458|Ifi44_chr3_151704336_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm24458|Ifi44_chr3_151704336_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm24963|Gm10742_chr3_17716175_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm24963|Gm10742_chr3_17716175_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm22097|Gm23041_chr10_109117223_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm22097|Gm23041_chr10_109117223_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gimap8_chr6_48655804_F | TCGTCGGCAGCGTCATCAGATTGTCACAGCCGCT | 59.7 | 0.02 |
| mm4_intron_Gimap8_chr6_48655804_R | GTCTCGTGGGCTCGGAGCCCAGGATTTCCAGGAGA | 60.2 | 0.02 |
| mm4_intergenic_Tjp1|Gm7546_chr7_65416259_F | TCGTCGGCAGCGTCAAAGCTGAGCCTTCCGAAAA | 58.0 | 0.02 |
| mm4_intergenic_Tjp1|Gm7546_chr7_65416259_R | GTCTCGTGGGCTCGGAGATCCATTTGAAACTAAGTTTGGT | 57.1 | 0.02 |
| mm4_intergenic_C1qtnf2|Ccnjl_chr11_43506376_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_C1qtnf2|Ccnjl_chr11_43506376_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Ndrg4_chr8_95707134_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Ndrg4_chr8_95707134_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Efcab4b_chr6_127628093_F | TCGTCGGCAGCGTCGCTTGGCTCTGCGTCTATGT | 60.4 | 0.02 |
| mm4_intron_Efcab4b_chr6_127628093_R | GTCTCGTGGGCTCGGGCTGCCAAAGTCATCCTTGG | 59.4 | 0.02 |
| mm4_intron_Cux1_chr5_136340137_F | TCGTCGGCAGCGTCCTACCTGGTTGGCTCGTTCA | 59.6 | 0.02 |
| mm4_intron_Cux1_chr5_136340137_R | GTCTCGTGGGCTCGGGCTTCAGTCTGAGCCAGAGG | 60.1 | 0.02 |
| mm4_intron_Pign_chr1_105547459_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Pign_chr1_105547459_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Fgf10_chr13_118788547_F | TCGTCGGCAGCGTCTGGCACCATGTTCAGCTAGA | 59.0 | 0.02 |
| mm4_intron_Fgf10_chr13_118788547_R | GTCTCGTGGGCTCGGTGGGTACTAGAGATGTCACTCACT | 60.0 | 0.02 |
| mm4_intron_Ambra1_chr2_91802641_F | TCGTCGGCAGCGTCGCAGGTCACTCTGAAGCCTT | 59.9 | 0.02 |
| mm4_intron_Ambra1_chr2_91802641_R | GTCTCGTGGGCTCGGTGCTGAGTATTCCTGACCTCTG | 59.2 | 0.02 |
| mm4_intron_Arhgap15_chr2_44155734_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Arhgap15_chr2_44155734_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm5091|Dll1_chr17_15339138_F | TCGTCGGCAGCGTCAGTCTCAGCTCAGAGGAACTA | 57.2 | 0.02 |
| mm4_intergenic_Gm5091|Dll1_chr17_15339138_R | GTCTCGTGGGCTCGGAGGCCAACTATTGCTTAAAACTAAA | 57.4 | 0.02 |
| mm4_intergenic_Itprip|Itprip/Wdr96/Gm22240_chr19_47912290_F | TCGTCGGCAGCGTCTCCTCCTCGGAGATCCAGAA | 59.0 | 0.02 |
| mm4_intergenic_Itprip|Itprip/Wdr96/Gm22240_chr19_47912290_R | GTCTCGTGGGCTCGGTCATAGCACAGTTCCCACGG | 59.7 | 0.02 |
| mm3_intron_Ak5_chr3_152591716_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Ak5_chr3_152591716_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6644|Plcl1_chr1_55589057_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm6644|Plcl1_chr1_55589057_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm15501|Gm5899_chr7_93955026_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm15501|Gm5899_chr7_93955026_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm20732|Gm25987_chr15_68408368_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm20732|Gm25987_chr15_68408368_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Ankef1|Snap25_chr2_136563641_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Ankef1|Snap25_chr2_136563641_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Osbpl10_chr9_115101156_F | TCGTCGGCAGCGTCCGGATGGTGTGAGTCCCTTC | 60.1 | 0.02 |
| mm3_intron_Osbpl10_chr9_115101156_R | GTCTCGTGGGCTCGGTGAACCAAAGAACCAACAGTCA | 58.3 | 0.02 |
| mm4_intergenic_Gm4929|Fam84a_chr12_13924068_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm4929|Fam84a_chr12_13924068_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Slc5a4a|Prmt2/Mir678_chr10_76196891_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Slc5a4a|Prmt2/Mir678_chr10_76196891_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm23891|1700018B24Rik_chr3_48312571_F | TCGTCGGCAGCGTCTCACTGGGAACAAGCTCCAC | 59.8 | 0.02 |
| mm4_intergenic_Gm23891|1700018B24Rik_chr3_48312571_R | GTCTCGTGGGCTCGGCCAACATGTCTCCCTTCCCA | 59.3 | 0.02 |
| mm3_intron_Cd200_chr16_45408048_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Cd200_chr16_45408048_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm10192|Gm12696_chr4_97321663_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm10192|Gm12696_chr4_97321663_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13854|Exoc4_chr6_33394978_F | TCGTCGGCAGCGTCACTGGTTCTACGGGCTTGTG | 59.9 | 0.01 |
| mm4_intergenic_Gm13854|Exoc4_chr6_33394978_R | GTCTCGTGGGCTCGGTGTTCCATAAGTCCTCAAGGGA | 58.4 | 0.01 |
| mm4_intergenic_Gm25000|Dapk1_chr13_60581226_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm25000|Dapk1_chr13_60581226_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23708|G6pd2_chr5_61049778_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23708|G6pd2_chr5_61049778_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Serinc3_chr2_163640625_F | TCGTCGGCAGCGTCTGTCCAACAGGAAGAGTGAATCT | 59.3 | 0.01 |
| mm3_intron_Serinc3_chr2_163640625_R | GTCTCGTGGGCTCGGCAGGCCAATAATGCCCAGGA | 60.1 | 0.01 |
| mm4_intergenic_Sars2|Gm6537_chr7_28754244_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Sars2|Gm6537_chr7_28754244_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm7488|Tbl1xr1_chr3_21874556_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm7488|Tbl1xr1_chr3_21874556_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Foxp4|Gm15556_chr17_47914986_F | TCGTCGGCAGCGTCCACCCTTGTTAATTGCGGCC | 60.1 | 0.01 |
| mm4_intergenic_Foxp4|Gm15556_chr17_47914986_R | GTCTCGTGGGCTCGGAGCTGTGTCTGATTAACCAAACT | 58.2 | 0.01 |
| mm4_intergenic_Oxgr1|Mbnl2_chr14_120157421_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Oxgr1|Mbnl2_chr14_120157421_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Mapk10_chr5_103072461_F | TCGTCGGCAGCGTCCTCCCAGTCACTTAGCAACTGA | 59.7 | 0.01 |
| mm4_intron_Mapk10_chr5_103072461_R | GTCTCGTGGGCTCGGCTGTCTTGAAGCTGCTTCGC | 59.8 | 0.01 |
| mm4_intron_Gata1_chrX_7967570_F | TCGTCGGCAGCGTCGCCTGGGAGGATGAAGACAG | 59.8 | 0.01 |
| mm4_intron_Gata1_chrX_7967570_R | GTCTCGTGGGCTCGGCACGGATCCCCAGACTTCTG | 59.8 | 0.01 |
| mm4_intron_Wdr20a_chr12_110752445_F | TCGTCGGCAGCGTCTTGCCAGTTCCTTCTGCAGG | 60.5 | 0.01 |
| mm4_intron_Wdr20a_chr12_110752445_R | GTCTCGTGGGCTCGGTCGGATGGAATACTGCAGGC | 59.8 | 0.01 |
| mm3_intergenic_Gm6846|Gm23839_chr10_21859608_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm6846|Gm23839_chr10_21859608_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tle3|Rplp1_chr9_61804917_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tle3|Rplp1_chr9_61804917_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Kpna3|Spryd7_chr14_61488213_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Kpna3|Spryd7_chr14_61488213_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Etl4|Gm13362/Etl4_chr2_20682385_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Etl4|Gm13362/Etl4_chr2_20682385_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_4930505O20Rik|Frem3_chr8_80600452_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_4930505O20Rik|Frem3_chr8_80600452_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ccdc25|Scara3_chr14_65888275_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Ccdc25|Scara3_chr14_65888275_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dennd4a_chr9_64913353_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Dennd4a_chr9_64913353_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intron_Hmbox1_chr14_64820073_F | TCGTCGGCAGCGTCGGTGTGGCTGAGAGTGACAA | 59.8 | 0.01 |
| mm2_intron_Hmbox1_chr14_64820073_R | GTCTCGTGGGCTCGGGAGAAAACCTGGGCTGGGAA | 59.8 | 0.01 |
| mm3_intergenic_Ago2|Ptk2_chr15_73196246_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Ago2|Ptk2_chr15_73196246_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm10619|St8sia2_chr7_73858015_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm10619|St8sia2_chr7_73858015_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Fam13c_chr10_70451428_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Fam13c_chr10_70451428_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fbxo8|Hand2_chr8_56773216_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fbxo8|Hand2_chr8_56773216_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm5258|Ncl_chr1_86341242_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm5258|Ncl_chr1_86341242_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_A630012P03Rik_chrX_52587851_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_A630012P03Rik_chrX_52587851_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ntrk2_chr13_59116428_F | TCGTCGGCAGCGTCCTGGCAGCCGATCATCTCTT | 59.8 | 0.01 |
| mm4_intron_Ntrk2_chr13_59116428_R | GTCTCGTGGGCTCGGGGCCACTTGTAGCTTGTGGT | 60.5 | 0.01 |
| mm4_intergenic_Adm|B430319F04Rik/Ampd3_chr7_110711262_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Adm|B430319F04Rik/Ampd3_chr7_110711262_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Gm16008_chr4_156031622_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Gm16008_chr4_156031622_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm9866|Sox11_chr12_27186587_F | TCGTCGGCAGCGTCTCAGAGACGAAGATATCAGGCA | 58.4 | 0.01 |
| mm4_intergenic_Gm9866|Sox11_chr12_27186587_R | GTCTCGTGGGCTCGGTGGAGCCCATGCAAAAGCTA | 59.9 | 0.01 |
| mm4_intergenic_Gm23117|Gm5083_chr13_43901384_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm23117|Gm5083_chr13_43901384_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Tgfbi|SMAD5-AS1_1_chr13_56687746_F | TCGTCGGCAGCGTCCTGGGGAAAGAGAGGGAGGA | 59.9 | 0.01 |
| mm4_intergenic_Tgfbi|SMAD5-AS1_1_chr13_56687746_R | GTCTCGTGGGCTCGGATAAGGAGCAGCTGTCAGGC | 59.8 | 0.01 |
| mm4_intergenic_St18|Pcmtd1_chr1_7020921_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_St18|Pcmtd1_chr1_7020921_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm2_intron_Hmgcll1_chr9_76128429_F | TCGTCGGCAGCGTCGGATGCTGCCTTACACCCAT | 60.1 | 0.01 |
| mm2_intron_Hmgcll1_chr9_76128429_R | GTCTCGTGGGCTCGGTTCCAAACACCGTGGCTCTT | 60.1 | 0.01 |
| mm4_intergenic_Gm7931|Slit2_chr5_47290828_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm7931|Slit2_chr5_47290828_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intergenic_Gm24253|Gm12241_chr11_56326164_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Gm24253|Gm12241_chr11_56326164_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm17131|Tmem132d_chr5_127891482_F | TCGTCGGCAGCGTCCCGAAGAAGTCTGCTCGTGT | 60.0 | 0.00 |
| mm4_intergenic_Gm17131|Tmem132d_chr5_127891482_R | GTCTCGTGGGCTCGGGACAGGCAAGGACTGGAGTC | 60.0 | 0.00 |
| mm4_intron_Dtd1_chr2_144733010_F | TCGTCGGCAGCGTCCTTCCCTTCACCGACCTTCC | 60.0 | 0.00 |
| mm4_intron_Dtd1_chr2_144733010_R | GTCTCGTGGGCTCGGAGTCAGGAAACCAGCACAGC | 60.5 | 0.00 |
| mm4_intergenic_Msr1|Fgf20_chr8_39690505_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Msr1|Fgf20_chr8_39690505_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22507|Trhde_chr10_114044325_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22507|Trhde_chr10_114044325_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8919|Gm8935_chr3_12357738_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm8919|Gm8935_chr3_12357738_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm16599|Cux1_chr5_136444461_F | TCGTCGGCAGCGTCGGGGAGGAGGGATTTGTTGT | 59.2 | 0.00 |
| mm4_intergenic_Gm16599|Cux1_chr5_136444461_R | GTCTCGTGGGCTCGGCCACCATCTCTGTTGCTTGC | 59.4 | 0.00 |
| mm4_intergenic_Eps8|Strap_chr6_137687828_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Eps8|Strap_chr6_137687828_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nedd1_chr10_92695608_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nedd1_chr10_92695608_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ubxn6|Hdgfrp2_chr17_56075586_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ubxn6|Hdgfrp2_chr17_56075586_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Smad1|Gm8079_chr8_79481911_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Smad1|Gm8079_chr8_79481911_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm13018|Prdm2_chr4_142668486_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm13018|Prdm2_chr4_142668486_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cspg5|mmu-mir-6236_chr9_110267545_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cspg5|mmu-mir-6236_chr9_110267545_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Socs6_chr18_88912342_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Socs6_chr18_88912342_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Wfdc10|Wfdc11_chr2_164662717_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Wfdc10|Wfdc11_chr2_164662717_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_5033403F01Rik|Gm23972_chr13_39348081_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_5033403F01Rik|Gm23972_chr13_39348081_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Sec63|Scml4_chr10_42849827_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Sec63|Scml4_chr10_42849827_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm11746|Slc24a3_chr2_144951672_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm11746|Slc24a3_chr2_144951672_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rorc_chr3_94375291_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rorc_chr3_94375291_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Fa2h|Gm24793_chr8_111414247_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Fa2h|Gm24793_chr8_111414247_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sgms1_chr19_32173254_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sgms1_chr19_32173254_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Arl13b|Stx19_chr16_62813680_F | TCGTCGGCAGCGTCAGCTGCATCCATTTCACCCT | 59.6 | 0.00 |
| mm4_intergenic_Arl13b|Stx19_chr16_62813680_R | GTCTCGTGGGCTCGGAGGACACAGTGTGAAGTGGA | 58.5 | 0.00 |
| mm4_intron_Iqcj_chr3_67940428_F | TCGTCGGCAGCGTCGCTCTGTGGTCCCTTCCTTC | 60.0 | 0.00 |
| mm4_intron_Iqcj_chr3_67940428_R | GTCTCGTGGGCTCGGAGCTGCTTCCAAGAAAGGGT | 59.5 | 0.00 |
| mm3_intron_Rasa3_chr8_13608817_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Rasa3_chr8_13608817_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Furin_chr7_80403739_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Furin_chr7_80403739_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Serpinb7|Serpinb2_chr1_107462978_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Serpinb7|Serpinb2_chr1_107462978_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ano10_chr9_122195282_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ano10_chr9_122195282_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23380|Gm13807_chr2_93388991_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23380|Gm13807_chr2_93388991_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tnrc6c_chr11_117720494_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tnrc6c_chr11_117720494_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Slc4a7_chr14_14750208_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Slc4a7_chr14_14750208_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ppfia2_chr10_106661750_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ppfia2_chr10_106661750_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Grik4_chr9_42700910_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Grik4_chr9_42700910_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm26791_chr14_118368925_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm26791_chr14_118368925_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gdpd5_chr7_99437894_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gdpd5_chr7_99437894_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cars_chr7_143573918_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cars_chr7_143573918_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Sppl2a|Ap4e1_chr2_126976024_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Sppl2a|Ap4e1_chr2_126976024_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Sdk2|1700025D23Rik_chr11_114083426_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Sdk2|1700025D23Rik_chr11_114083426_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Runx1|AC124326.1_chr16_92827147_F | TCGTCGGCAGCGTCTGTGGGTGTGAGCTCTTCTG | 59.6 | 0.00 |
| mm4_intergenic_Runx1|AC124326.1_chr16_92827147_R | GTCTCGTGGGCTCGGTAAGGAAAGGAAGGCCAGGC | 59.6 | 0.00 |
| mm4_intergenic_Kif6|Gm16555_chr17_49811913_F | TCGTCGGCAGCGTCAGGTTAAAGGTGCTCCCTGC | 59.9 | 0.00 |
| mm4_intergenic_Kif6|Gm16555_chr17_49811913_R | GTCTCGTGGGCTCGGATGTGTCAGTCAGGGGTTCC | 59.3 | 0.00 |
| mm4_intergenic_Kcnh5|Rhoj_chr12_75260240_F | TCGTCGGCAGCGTCCTGGTGGCTTCAGAGTTCCT | 59.3 | 0.00 |
| mm4_intergenic_Kcnh5|Rhoj_chr12_75260240_R | GTCTCGTGGGCTCGGTCTCCCTTAGAGCACCTCCT | 58.9 | 0.00 |
| mm4_intergenic_Grm8|Gm26310_chr6_27658615_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Grm8|Gm26310_chr6_27658615_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm4791|Gm22286_chr9_47396639_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm4791|Gm22286_chr9_47396639_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25762|Olfr166_chr16_19477763_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25762|Olfr166_chr16_19477763_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25727|F830104G03Rik_chr3_56767331_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm25727|F830104G03Rik_chr3_56767331_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22828|Gm23960_chr6_20436099_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22828|Gm23960_chr6_20436099_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12789|Gm12799_chr4_102026230_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12789|Gm12799_chr4_102026230_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12701|Ror1_chr4_100190981_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12701|Ror1_chr4_100190981_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12518|Gm26144_chr4_56662363_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12518|Gm26144_chr4_56662363_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10451|Mir5135_chr12_76474430_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10451|Mir5135_chr12_76474430_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10247|Grin2a_chr16_9087534_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm10247|Grin2a_chr16_9087534_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_G730013B05Rik|Ccdc54_chr16_50560010_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_G730013B05Rik|Ccdc54_chr16_50560010_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Agbl1|Gm23239_chr7_77822745_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Agbl1|Gm23239_chr7_77822745_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Trmt1_chr8_84690955_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Trmt1_chr8_84690955_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Oxsm_chr14_16239518_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Oxsm_chr14_16239518_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Grid2_chr6_64169987_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Grid2_chr6_64169987_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Mamdc2|1700028P14Rik_chr19_23523728_F | TCGTCGGCAGCGTCGCCACTGGCTAGTCGGTAAC | 60.4 | 0.00 |
| mm3_intergenic_Mamdc2|1700028P14Rik_chr19_23523728_R | GTCTCGTGGGCTCGGTAGGGTGGGGCTCATGTTTG | 59.6 | 0.00 |
| mm3_intergenic_Gm24350|Gm13464_chr2_42892783_F | TCGTCGGCAGCGTCTCCCCTCATAAAACCCCATCA | 58.4 | 0.00 |
| mm3_intergenic_Gm24350|Gm13464_chr2_42892783_R | GTCTCGTGGGCTCGGGCCGTGATGCTGCAAAGTAG | 59.9 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313602 |
TTGCAGCAGGAGGATGACAGCTTAGAAAGAAGAGGGCAATGGGGCTTCCTCCCAGAGGCGGTGCGGCACAGAGGAGCGCT CGCATCACAAGGTGACCCTAGCTCCCCACTGCCATCT |
| mm3_intergenic_Arnt2|Gm25790_chr7_84312179 |
ACTATCGACAGCCTCCAGGATATAAACACATCACGACTCTTTTGTTAGAAAGAAGAGAGCAAATGGAAACCTTCAGTGAC CCAGGAGT |
| mm2_intergenic_Ets2|2810404F17Rik_chr16_95781643 |
ATGGTCCCAATCCAAGGCAGCAGTAGTCGGAAAAGAAAGACCTTGAACTTAGAAAGAAAAGGGTAATGGGAAAGATTTCA TTCCAGAAAAAAAAGGGGGGGCAGGAAAGACGTATTAGT |
| mm4_intergenic_9330185C12Rik|Cntnap5a_chr1_114674241 |
CAGTCCATCAAGTACAGCCACTTTGTAGAGCAAAATACTAAATGACACAGGATAGAAAGAAAAGGGCATTAGGTAACATG AAGAAAGAAAGGAGCCCCAACTCCCCACGGTGTGGTTGAAACCTCTCACCAGCTGA |
| mm4_intron_Rspo3_chr10_29527392 |
TGTTTAGAAACTGTCTGTTGGGAAGGTTAGAAGGAAGAGGACAAAGGGAAGCTATGGGATTACGAAAGTCTAAAGTGGGA TTGAAAACACAACGTCTTGTGTGCCCAATGTG |
| mm3_intron_Myo3a_chr2_22238935 |
AGTTTTCCCTATAGGATTGTGGTTTATACAAGAAGTAAAATAAGGACATTGAAAGGATTTGTAATAGTATAAGTCATAGG GTCTAGTCTGAGAAAGAAGAAAGCAATAGGGAGTAGAGCCAAAGGAAGGTTGACAGG |
| mm4_intergenic_Gm16545|Ear2_chr14_44094950 |
CTCTGAGACAGGTGTTGGCAATTTCTCCCTTTGCTCTCTTCCTTCTATGTAGCTAGGGTGGCTTAGGCTCTCCCACACTG |
| mm4_intergenic_Ear1|Ear-ps8_chr14_43883265 |
CAGTGTGGGAGAGCCTAAGCCACCCTAGCTACATAGAAGGAAGAGAGCAAAGGGAGAAATTGCCAACACCTGTCTCAGAG |
| mm4_intergenic_Ear1|Ear-ps12_chr14_43827338 |
CAGTGTGGGAGAGCCTAAGCCACCCTAGCTACATAGAAGGAAGAGAGCAAAGGGAGAAATTGCCAACACCTGTCTCAGAG |
| mm4_intron_Jag2_chr12_112919482 |
CAGAACGTCTGCAGGTCCATCCCACCCCTCCACCCCACTGGCCCATTGCTCTCTTCTTCCTCACTGCCACGCTGTGTGGT TCTCCTCAGCCTC |
| mm4_intergenic_Gm22463|Npbwr1_chr1_5846292 |
ACAATATGACAAGTAACAACTGGTTTCTTGTTAGGAAGAAGAGGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGCACATTTACTTTATGATTGGCCA |
| mm3_intergenic_Ctbp2|Tex36_chr7_133408153 |
GTGTACCCCTCCTCCCATCTCCTCATTTTCCACAGAGCCAGCTTCCAGCTCCTATTGCCCTCTTTGTTCTAAATAGATAT TTCCTGGCATTCTGCCATCCTCCTTTCCTTGC |
| mm4_exon_Tead1_chr7_112901099 | CAGAGTCAGGGTGGTGTGTCGGCTGCCCCACTGTCCTCTTCTTCCTAATGCCTTTCTGGGCAGTAGGAGC |
| mm3_intron_Stau2_chr1_16493579 |
GCCTCAAGCACTGCACTCTTTGTTCCTAAGAGACCCATCCATGTATATTATACATTTTCCTCCTATTTCCCTCTCCTTTC TAAAAGATTTAGAGCATACTGATAGCAGCACT |
| mm4_intergenic_Gm15443|Gm23535_chr1_149090326 |
TGCTGAAAACCATGTCCCTCAATCTCTAGTAATAACAGTGATAGGTAATTTTGTCAACCAATTGCTCTCTTATTTCTCAA GTTGTTATGAACCAGCATAAGAACTGGGATCATTATTTTGGAAAGAAGCCCTCTGTGA |
| mm4_intron_Pld5_chr1_176150483 |
TGTGCCCTTTCTCGTCACTCTTTCTAAATCAGCCATTATTCTTGTTCCCTTTCAAATCTCTCAGTGCTGTCCCATTGTCC TCTTTATTCTATGGTGCCCACTCTGGCTTGCATCTACAACTGAATCTGTGCTGGGCT |
| mm4_intergenic_AC116451.1|Rpl13a-ps1_chr19_49982242 |
AGAACATTGGCAGATCTTCTTTGAATATATAGGTGACACTATATTTGGGTTAAATGAATAAGTGACAATTGGTAAATATT TAATGGCACTGTACCTATATCTCTCTTCTTTCTAAAGAAGCAAAGAAACGGGGTCTCT |
| mm4_intron_Cdh2_chr18_16774748 |
ACAGTCCTCTTGGCATCCAGCCCCATTTTTTTTCAGCTATCTTGTACAAATAACCTCTGTTTCTGAAGGGTTACAATTAG AATGTAGAGGGCAAAGGGTTAATCTTTTTGATAATTGGAGTTGAAGGAACAAATCCCA |
| mm4_intron_Plaur_chr7_24463014 |
TCAGCCTTCTTCCTCCAGGAAATGCGGGGGAAATGGTGTTGAGAAAGTAGAGGGAAATGGGGAAGGAATTGAGTCAGGGT TTGGCACGGTGAATAACTCGGAAAGCCCTCTCTAGTCCGC |
| mm4_intergenic_Olfm4|Gm9578_chr14_80025787 |
CTTCCTGTGCTTCGGTGGATGAATAAAGCCAACAAGGAAAGTAGAAATTGAGCCCATTGCCATTTTCTTTTTAACTTAGC TGGAAGCCGGCTTC |
| mm4_intron_Plxna2_chr1_194635324 |
AAGGTGATGCCAAGAGAGCCCTACTTAGGATGAAGGGAGCAATAGGCCACCTTTTGTGGTCACCCTTAGTCCAGAGGATG GGTGTACTCCCAGGAGCAGTTTCTGT |
| mm4_intron_Dctn2_chr10_127274222 |
GTAGCCCAGAAACCAGGCTTCTAAGCACACACTCTGCCAATAGTCCTCTTCTATCTATGAGTTGGTATCTTACCTTGTAC AGATTAAACCTGCCATTTTACATTGAGAATATTGCCCTTGCCTCCTCC |
| mm4_intergenic_RP23-297I16.6/Lhx3/Qsox2|Qsox2_chr2_26211579 |
GCACACTAACTGTCCCAGCTTTCCTCCCTCCACCACTCCTGGGCATCCAAATGCCCTCTTCTTTCTGGCAAGCCATGCAT ACAAAGGAGGTACATTGCATTCTGGGCTCTACTTGC |
| mm4_intron_Dmd_chrX_84724387 |
AATTTCAAGCTCAATGCATGGTATAGTATATGTGTTAAGCTAAATACTGTGTCTTATTGTTGGAGGTATTGTATTGCCCT ACTGCTTTCTTCTTTCAAAGCTAATAGGGTCAATGACTCATAAAGCTCCAAACCCATGGA |
| mm4_intron_Srgap3_chr6_112872847 |
GAACAGTCAGGACATCCGGGAAGCCCCCCCACCCCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCCAAGACTCCTCTGTAAGC |
| mm4_intergenic_Cpxcr1|H2afb2_chrX_116506758 |
CAGACCTCTCAAGTTCCCACATAGAGTTTTCAGTATCAACAATATTAGGAAGCACAGGGCAATGGGCTTGTTTATAAATC TAACAGGAGCAATAGGTTTCATATTGTAATCATAGACCCCAAACTGGCTGTCTT |
| mm4_intergenic_Gm25665|Gm24469_chr8_18278325 |
ACTGGTGACTCACATGGCTTTTACATGCCTACCGTGGCTTCACCAGACTTTATAAAACATAGAGAGAAGAGGACACTGGG TACCAGAGTAAAACATTAAAGACAACAAGCGGCTGCAAAT |
| mm4_intron_Kif13b_chr14_64687628 |
GCTGCAGAGTAAGGGAGTCATGTGGGTTATATGAAGTCCTTCTTTCTTTCAGTTTTATAAAGAAGACAGCAATGGGAGAA ACTGAGCATACCCCAGTCCT |
| mm4_intron_Kcnma1_chr14_23716148 |
TACAGTCTTAGTGCCGCCACTACTAACTTTCTACGTGACCTCTGGATTCATGCCCTCCTTAGTAAGATGAGGACATTTGG CAGTTTATAATGGATTGAGCTGACCCTGTTC |
| mm4_intergenic_Msx1|Stx18_chr5_38006871 |
TGTCCCCAAGGAAATGCACAGTCATCCTGAGAGAGCAGAGGACAATGGGGAGGTGTCTTATTACATAACTGGAGAGACAA TGTCTTTTATACTCTGTCTGGTTCACTTTTCACAC |
| mm4_intergenic_Nox3|Gm23186_chr17_3898105 | GTTCCTCCCTGCTTCCTTCCTGTCACCTGAGATATAAGAGAGCAATGGGGCTGGGTGATGGTACTGTCT |
| mm4_intergenic_Hsp25-ps1/Gm9817|Gm8513_chr13_45130564 |
AAGTGCCACCAAGTCAGGTTAGGTCAGATACTTAGAAACAAGAGAACACTGGGCCCCTGCTAATATCTGCTACTCTGGTC TAGCTACCCTGCACCCCCCCACACACACACACACAAC |
| mm4_exon_Casz1_chr4_148939040 |
GCACTGGCCCTCTCTAACTCAGGCCTGCCCACCACCACACCCTATTTCCCTCTGCTTCCTAACCGTGGGAGCGCCTCATT GCCTGTGGGATCTCCA |
| mm3_intergenic_Gm25656|Cntn6_chr6_104443056 |
AAAAGTCAGGGCAGCTTGGAGAAATGAAACAAATAAGGAAATGCTGGCTTTTGAAAGAACAGGGCAATGAGCTCCTGGAG AGTACTTGGTAGAAGC |
| mm4_intergenic_Amer3|Arhgef4_chr1_34677993 |
AAAGGGTGGAGGTAAGCGTGCCAGTGAGCCGCAGATAGACCGCTGTGGATCCACTTGCCCTTTTCTTACTTAGACTACGC TCAGATTCCTAGTGGGCAGGC |
| mm4_intron_Mtmr6_chr14_60269807 |
TCCCCTTGCCCCATTGTTTTTCGTTCTTTTGCCATTTGCCTTTCCCCATTTACCCTTTGCTTTCTAAGGATCCTGAGGCT GTTTTTATGGTGCCACAAATAGTGACCTAAAATTGTTGTAGTTACTTCCAAAACAGGT |
| mm4_intergenic_Gm26685|Dpt_chr1_164607967 |
AGGGCAGTTTCAATCTGTGGTTTTTATTATTTCCTGTGAATTTAAAAATCAAGATAACTTGGTAAGAAAGAGGAGGGCCA TGGGTGAGGAAGGCATGTACATTATAGACTCTGAATATGCATCAGTGTGTGCATGC |
| mm4_intron_Gm17296_chr8_126451194 |
GACCGGAATCTCCCTTTCCAGTCTTCTGGCTACTCCCAATGGCCCTCCTCTTTCCAATGACCTCTCCTTCTCAAGGTCTC AAGAGCATGGCTGATGGATTGCT |
| mm4_intergenic_Gm25278|Csmd1_chr8_16977130 |
TGTCACATTGCCAGGAACGAATAGCAACTCTTGAAATATGGCCAATTTCCCTCATGTTTCTAAATAAAATAGTTGTAAAA TAATTCATTTTTTTATTCCTCAAATATCCAAAATAGCCTTTTCTGCATAAAGACGC |
| mm4_intergenic_Plk2|Actbl2_chr13_110841758 |
TGCAGCCTGGGTTAATCCTGATGTTGAAGATACTCAGGAGCTTAGAAACAAAATGGCAAAAGGAGCTCTTTGACTTATTA CTATATTGTTATAAAACTTCAACAAACTATCTCTCATCAGATAGCAATGCA |
| mm4_intergenic_Ifi47|Olfr1396_chr11_49111729 |
TTTAAAACCCTCCCTCCCGCCACCCCAACCCCCCGACTGCTCTCTGCTTTCAAAGAGATCATTGGAATTTCAGGAAAAAA TGATTTTATTACAAATGGGGACAAACAACTGATGCCTGGCTCAGCACAATGGATGT |
| mm4_intron_Gm13391_chr2_6477845 |
CTCTACTGCGTCCCACTGCCTGTTGCCCTCTGTCCCCATCACCCTCTTCTTTTTGAGGATGAGAGAATATAATAAAGAAG GGAAGGTTCTAGTTGTCTCCTCTTGTCATCTCAGCCATGCCC |
| mm4_intergenic_Gm13052|Gm13018_chr4_142538119 |
TTCTTCACCAAGGCAGGGACCTGCATAATCCATTTGGTCTCAGCCTTTCCTCTACAGAACAACAAATGGTGTGTGTCCCA TTTGGAAAGAAGATGGCAGTGGGCACCACTCGATAGCACTGGCACTCAGCA |
| mm4_intergenic_C630043F03Rik|Gm11235_chr4_72281745 |
GAGGGGCTCTTGGGTAATGTAAGTAAATTATCCCATTAAGGGTATAATTATTCCTCCAATTTCCCTCTGCTTTGTCAGTG TTTCCAAAACAGTGGTTTCCTGGTAAGGAGATTGATAGGCCCAGTGGGATTCTCT |
| mm4_intergenic_Tbc1d1|Gm25306_chr5_64409441 |
CCTCACCTCGGCCTTTGATTTTGTAAATCAATGCAGCTTCTCTTCCAGGAGAAAGAATTCTTCCTGAAAGAAGAGGGCAA TCAGGGTGGAGACTCCAGAATTCCTCTTGGATCAGTTGGGGATCTCTGAGGCT |
| mm4_intergenic_Gm24298|4921513I03Rik_chr10_120678226 |
TCAGCCCTTTACAAGCCCAGGTCCCTGTGGCAGATCAGATGTAGCTTCTTTGCTGACCACCCCATTGCCATCCTGTTTCC AAGGAGGACAGGTTTGTGTCGGT |
| mm3_intergenic_Rnf182|Cd83_chr13_43731722 |
AAGCCACGCTCTTGCTTTTGAGTAACAGACACCAAGTGACTTCTCCCTCTTGTCCACTTCTTTCTAAGACTGTGTCTTCA TGGGGTGATCTGTCTGTGGGCTCAGGAAG |
| mm4_intergenic_Gm23905|Zfp36l2_chr17_84076112 |
GCAATCCTTGTCTCATGGCCCCTTAAAAAGATGAGAGCACTCGGCCTTATCATTCAATTCTTCACATCCATCAGTGGGAA ATGGCTACCTGACCTACCAAGAAGCTACACCTAGTGGACACTGAGGACGGT |
| mm4_intergenic_Iba57|Gjc2_chr11_59173858 |
TCAAGGCCTCTGCATAGTGCCCACTGAGAAATAGGTTCTCCCTGTCTGTAAAAAATGTTCTTAGAAGGGACCTCTTGTCC TCCTCTGTCTAAGAAGGAAACTACCTCACTCTGATCTCTCTCACTAGGCTGGACCA |
| mm4_exon_Zpbp_chr11_11281435 | CCACCAGGGCTAACCAAGAACAACCACAGGCCAATTGCCTTCTTCTGTATGAGAATACTGAGGCTGCACTTGTTCACA |
| mm4_intron_Pcmtd1_chr1_7111627 |
AGCAGCTGTAGCAGTCAAGGCCTGTAGTCCTCTTCTTTTTAAGGCTGTCTGTCCTTTTAACCTCAGCTTTGCATGCTGTT CCTCTTGTTCCTGTTTTAGCCCTTTCTGCACTTTTCAGCTGCCT |
| mm4_intergenic_Gm16029|Gdnf_chr15_7498630 |
GGGGAAAGGGGTCAGAGATGTGAAGGAAGTAGAAAGAAGAAGGGAATAGGGAGATGGCAAAAGATCAGAGAAGACAAAGG CAGGCAACTATGCTGACGGAAGCAAGAGACCTTCC |
| mm4_intron_Nebl_chr2_17639290 |
GCCATCGCAATGCCTACTTGGACTGAATCATGCTGTTTTAAAGAGTACATAATATACCAATTATCCTATTGCCCTTATCT TTATGAGTCTCCAAAGGGTGGCGAACCTAAGTGGGGTGAT |
| mm4_intron_Pcyt1b_chrX_93729810 |
TGTGGCCCTGTCCCTCATATAGATTATAGGCAAGAAGGATGGTTGATAATGGAAGTGTTCCACCAAAGACCTTGCAATAT TTGAAAGAAGAGTGCAGTAGGGCTGACAAATAGAAAGACCTGTTTTGGAAGTTGAGACT |
| mm4_intergenic_Hmgb1-ps9|Pik3r1_chr13_101309775 |
GGGCATTGCTCAGAACTTTCACACTAAGCAAGAAGAGGGACATCGGGGTCCTCCTAAAATAGGGACAAAAATAATTCATA ATGGATGGGAGTGTAGAGTTTGGGAAAAGAACCAATCTGCCTTCAGTGGT |
| mm4_intron_Gimap8_chr6_48655804 |
ATCAGATTGTCACAGCCGCTGCCTTAGCCTATGACCTCATGCTCTAATACCTTTGAAGGATGAGGGCCATGGGGAGCTCA ATTTAGCAATTCTCCTGGAAATCCTGGGCT |
| mm4_intergenic_Tjp1|Gm7546_chr7_65416259 |
AAAGCTGAGCCTTCCGAAAAATACTAAGAGATTACTTAATAAATGTATTTAATGCAATTGGGTAACTCTGAGAAAGATGA GGGAAGTTGGATTTCTATCTCCTTTAAACCAAACTTAGTTTCAAATGGATCT |
| mm4_intron_Efcab4b_chr6_127628093 |
GCTTGGCTCTGCGTCTATGTCTCCTCATGCCCTCTCCTTTCTCAGTTCTACATATCCAGCTCAGAGAGCTCAGTGCTCAC ACTAGAGCTTCCGCTGTGAACATGAAGACTCCAAGGATGACTTTGGCAGC |
| mm4_intron_Cux1_chr5_136340137 |
CTACCTGGTTGGCTCGTTCAAGGTCGGTCATGATCATCTCGATCTCATCGGCCCTTGGAAAGAAGAGGGATAGAGGTTAG TCATCACTGAGTTGGTGCATCGAAGGCCCTCTGGCTCAGACTGAAGC |
| mm4_intron_Fgf10_chr13_118788547 |
TGGCACCATGTTCAGCTAGAACCCAGGGCCTTCTTCTTTCTATGTATGAACACTATCAAGTGAGTGACATCTCTAGTACC CA |
| mm4_intron_Ambra1_chr2_91802641 |
GCAGGTCACTCTGAAGCCTTCTCACCAAAGGCCCTCTGCTTACTAAGCAGCTATTTAGAGTAATAATCAGAGGTCAGGAA TACTCAGCA |
| mm4_intergenic_Gm5091|Dll1_chr17_15339138 |
AGTCTCAGCTCAGAGGAACTATATAATCAGGTTGAAGTCTCTTGGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNAAATGTAATCGATTTTAGTTTTAAGCAATAGTTGGCCT |
| mm4_intergenic_Itprip|Itprip/Wdr96/Gm22240_chr19_47912290 |
TCCTCCTCGGAGATCCAGAACAAAAGTCTCAGCAAACAAAGGACCTGTTCATGAACTTGAGGTAACACCCCTGACTGCTT CTATAGAAGAGGGCTATTGGAACAGGCTCCCGTGGGAACTGTGCTATGA |
| mm3_intron_Osbpl10_chr9_115101156 |
CGGATGGTGTGAGTCCCTTCCCCCTTTCCCCTCTTTTTTCTAAGTTAACTCATCTTTTCATGACTGTTGGTTCTTTGGTT CA |
| mm4_intergenic_Gm23891|1700018B24Rik_chr3_48312571 |
TCACTGGGAACAAGCTCCACCAAGGTACTTTTCTCTGCCTATTTCATATATTCATCTCAACCACATTTCCTTTGAAAGAA TTTGGCAATGGGTATCAGTGACGTAATGGGAAGGGAGACATGTTGG |
| mm4_intergenic_Gm13854|Exoc4_chr6_33394978 |
ACTGGTTCTACGGGCTTGTGCATCTCTTCACAGTGACCTAGTTCAGAATGACAGTTACCTCTTAGAGAGCTGATGGCAAT GGGCATTGGTAGAAAATCCCTTGAGGACTTATGGAACA |
| mm3_intron_Serinc3_chr2_163640625 |
TGTCCAACAGGAAGAGTGAATCTAATAAGCTCTCTATTGCCCTCTTCTGTCTTTGGTGGATTATTCCCATCCTGGGCATT ATTGGCCTG |
| mm4_intergenic_Foxp4|Gm15556_chr17_47914986 |
CACCCTTGTTAATTGCGGCCTTTTGAAATTAAATTACTCCCTAATTAGCATATCAAAGCCATTGATTCGGAGCTGGGAAA GATGAGGGCAAGAGGAGCCTAATGCCAAGTTTGGTTAATCAGACACAGCT |
| mm4_intron_Mapk10_chr5_103072461 |
CTCCCAGTCACTTAGCAACTGAATCAGAATGAAGAGGGCAACAGGGAAATGATTTGTAAAAATAATTAACTCTAAACTCT GTGCAAACGATAAGTGGAAAAGAGGCTAGAAGGCGAAGCAGCTTCAAGACAG |
| mm4_intron_Gata1_chrX_7967570 |
GCCTGGGAGGATGAAGACAGAGGTAAGGGGACATAGATAGCTTAGAAGGAATAGGAGAATGGGAAGAAGTTGGGGCAGAT AGAAGTTTTGGCAAGGAGAGATGGAGGTTGGAACAGAAGTCTGGGGATCCGTG |
| mm4_intron_Wdr20a_chr12_110752445 |
TTGCCAGTTCCTTCTGCAGGTCCTGTTGCCCTCTGCTTTCCAGGCCATGTAATGCTCTAGTCCTAGATGTAGCCATCTCT GTATAAAACTGTGGCTTTCCTCCTGGCCTGCAGTATTCCATCCGA |
| mm2_intron_Hmbox1_chr14_64820073 |
GGTGTGGCTGAGAGTGACAAACATCCTAGGAACCAGAGCTCTGGAGCAGGCTTCCAATGCCCTCGTCTTTCTAAGGTCAC CTAGTGAGCTGGAGCGAAAGGAACACGGGCTGTCTGCCTTCCCAGCCCAGGTTTTCTC |
| mm4_intron_Ntrk2_chr13_59116428 |
CTGGCAGCCGATCATCTCTTAATGGGGCTTGCCCTTTGGCCATCTTCTTTCTGAGGGAGTCAACTGTCTGGCTTCCAAAC AAGTTGTCACTCACTTAGTGAGTAACTACCACAAGCTACAAGTGGCC |
| mm4_intergenic_Gm9866|Sox11_chr12_27186587 |
TCAGAGACGAAGATATCAGGCATGACTCAGTCCCAATCCCCTCTCCTTTCAAAGCTGCCAGGGCTTGCCTCCTGCCTCAC AAACAGCCTCCTAGCTTTTGCATGGGCTCCA |
| mm4_intergenic_Tgfbi|SMAD5-AS1_1_chr13_56687746 |
CTGGGGAAAGAGAGGGAGGACACAGGATGCAAGAGTCTGAGGGAAAACCAATTCTGATGGAGCTTAGAAAGCAGAGGAGA AAAGGTGAGTCAAGGGGTAGAGCCGGAGGCCATGGCCTGACAGCTGCTCCTTAT |
| mm2_intron_Hmgcll1_chr9_76128429 |
GGATGCTGCCTTACACCCATCATACTAGATACTTTAGCTTTTTCACTGTCTTATCCTCTATTGCACTCTTCTTTCTAAAA CCACTTTCCTTGAAATATGGAAGAGCCACGGTGTTTGGAA |
| mm4_intergenic_Gm17131|Tmem132d_chr5_127891482 |
CCGAAGAAGTCTGCTCGTGTGCAGATCTATGGAGGTTTGAAAAGGAGTGACCGGGGCACTGGTGTGAAGAGACACTATCT GCCAGTCACAGTTTTCTTAGAATCAAGCGGGCAAGTGGGGGACTCCAGTCCTTGCCTGTC |
| mm4_intron_Dtd1_chr2_144733010 |
CTTCCCTTCACCGACCTTCCATGTCTCACCTGCTCTGCCCTGCAGCATCCTGCTTCCCTCTTCTTTCTCAGAGTGGTGGT CCCTGGAACACCGAGTGCCCCTGCAAGGCTGTGCTGGTTTCCTGACT |
| mm4_intergenic_Gm16599|Cux1_chr5_136444461 |
GGGGAGGAGGGATTTGTTGTTCAGAGGTCAGAGTTTGCTTAGAATGCAGATGGCCATGGGTTCCATCCTAGCACCATAAA CAGCAAAAATAAAGACAGCAAGCAACAGAGATGGTGG |
| mm4_intergenic_Arl13b|Stx19_chr16_62813680 |
AGCTGCATCCATTTCACCCTGGAGTGACTAGACAGAGCAACTCTGGAAATCAGTGTGGAAATCAGTCTCTCCTATTCCAC CCCTCTTTCTAAGCACAATCATTTTCATTATTTCTTAGTTCCACTTCACACTGTGTCCT |
| mm4_intron_Iqcj_chr3_67940428 | GCTCTGTGGTCCCTTCCTTCTGCCCTAGCCCCCTCTTCTTCCTAAGACCCTTTCTTGGAAGCAGCT |
| mm4_intergenic_Runx1|AC124326.1_chr16_92827147 |
TGTGGGTGTGAGCTCTTCTGTTCACCTCCACCTATTGACCTCTTCGTTCTATCTGTTTTACTTGCTGAGAAGTGAAGCCT TAGTCTTCCTGGGATCCCCAGGCAGGGCCTGGCCTTCCTTTCCTTA |
| mm4_intergenic_Kif6|Gm16555_chr17_49811913 |
AGGTTAAAGGTGCTCCCTGCAGTTACATTGAAAGAAGAGGCCAAATGGGGAGTTTAATTCACTGTATCTCCTTTCTCCCT TAGATATTCACAGGTACAGTTAGACCCGGGAACCCCTGACTGACACAT |
| mm4_intergenic_Kcnh5|Rhoj_chr12_75260240 |
CTGGTGGCTTCAGAGTTCCTTGTCTCATACCCAGAAAGAAGAAGCCAATAGGGACAAGGGAGCAGAGTACACAGATTTAT TGAAGAAAAGTGAGGAAGAACCTCTGAGAATAGGAGGTGCTCTAAGGGAGA |
| mm3_intergenic_Mamdc2|1700028P14Rik_chr19_23523728 |
GCCACTGGCTAGTCGGTAACTGAGTCCTCTAAGGACAAGGACGGGATCTAAAGAGCAGAAATGCCTGAGAAAGAAGAGGT CAAGTGGTCAAACATGAGCCCCACCCTA |
| mm3_intergenic_Gm24350|Gm13464_chr2_42892783 |
TCCCCTCATAAAACCCCATCAACATTTTAAGTTTAATCTCAGAGACTGTTCAGAAAATATCATTTGACATAGTTCCTTAG AAAGAAGAGGTCAGCTGGCTAGAGGCTGGATTTATTTACTCTACTTTGCAGCATCACGGC |