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Contents:

PCR primers for off-targets of GATGACAGCTTAGAAAGAAG AGG

In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.

In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.

If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.

Maximum amplicon length:     Primer Tm:

NamePrimer Sequence Tm CFD Score
ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313594_F TCGTCGGCAGCGTCCGTCACCAGCGGTACTGTAA 59.7 1.00
ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313594_R GTCTCGTGGGCTCGGGGGTCACCTTGTGATGCGA 60.0 1.00
mm4_intergenic_Gm24120|Nr2f2_chr7_70309015_F Primer3: not found at this Tm N.d. 0.72
mm4_intergenic_Gm24120|Nr2f2_chr7_70309015_R Primer3: not found at this Tm N.d. 0.72
mm4_intron_Phactr3_chr2_178183294_F Primer3: not found at this Tm N.d. 0.70
mm4_intron_Phactr3_chr2_178183294_R Primer3: not found at this Tm N.d. 0.70
mm2_intergenic_Gm14825|4932442L08Rik_chrX_94349572_F TCGTCGGCAGCGTCGTGTGTCCAGTCACTTACACT 57.5 0.63
mm2_intergenic_Gm14825|4932442L08Rik_chrX_94349572_R GTCTCGTGGGCTCGGTCTCTCACTGGTCTCACAGAC 58.4 0.63
mm4_intergenic_Gm23384|Gm11851_chr4_17613202_F Primer3: not found at this Tm N.d. 0.63
mm4_intergenic_Gm23384|Gm11851_chr4_17613202_R Primer3: not found at this Tm N.d. 0.63
mm2_intergenic_Slc7a11|Gm24503_chr3_50826456_F TCGTCGGCAGCGTCTCCTCCAAGCTCCCAGAGAA 59.8 0.62
mm2_intergenic_Slc7a11|Gm24503_chr3_50826456_R GTCTCGTGGGCTCGGGCACACTGCATGTTTCTATCCA 59.2 0.62
mm3_intergenic_Gm24200|1190002N15Rik_chr9_94382346_F TCGTCGGCAGCGTCACTGTGTTCTGATTTCTGCCTCA 60.1 0.61
mm3_intergenic_Gm24200|1190002N15Rik_chr9_94382346_R GTCTCGTGGGCTCGGCTAGCACCAGATGGACTGCG 60.5 0.61
mm4_intergenic_Cdh6|Gm9630_chr15_13192996_F Primer3: not found at this Tm N.d. 0.61
mm4_intergenic_Cdh6|Gm9630_chr15_13192996_R Primer3: not found at this Tm N.d. 0.61
mm4_intron_Prkd1_chr12_50413040_F TCGTCGGCAGCGTCGGAAGCCCAGGTATGCACAT 60.1 0.58
mm4_intron_Prkd1_chr12_50413040_R GTCTCGTGGGCTCGGCATTCACTCACGACCCTCCC 60.1 0.58
mm4_intergenic_Fam98a|Gm24126_chr17_75618210_F TCGTCGGCAGCGTCTGCTGGAAAATGTACCCTAAGTGA 59.9 0.57
mm4_intergenic_Fam98a|Gm24126_chr17_75618210_R GTCTCGTGGGCTCGGACATCCAAAAGGCCTGGGTT 59.8 0.57
mm3_intron_Cntnap2_chr6_46916683_F TCGTCGGCAGCGTCATGTAAGCAGTGTAGGGCCC 59.4 0.54
mm3_intron_Cntnap2_chr6_46916683_R GTCTCGTGGGCTCGGTGCAGGGAATGGAAGCAAGT 59.8 0.54
mm4_exon_BC006965_chr11_112664435_F TCGTCGGCAGCGTCCACAGTCCCTATCCGCTGTC 59.8 0.47
mm4_exon_BC006965_chr11_112664435_R GTCTCGTGGGCTCGGGCCTTGTGAGTCCTATTGGCT 60.0 0.47
mm4_intron_AB041803_chr6_31191223_F Primer3: not found at this Tm N.d. 0.45
mm4_intron_AB041803_chr6_31191223_R Primer3: not found at this Tm N.d. 0.45
mm4_intergenic_Ces1h|Ces5a_chr8_93368515_F Primer3: not found at this Tm N.d. 0.43
mm4_intergenic_Ces1h|Ces5a_chr8_93368515_R Primer3: not found at this Tm N.d. 0.43
mm4_intergenic_Skap2|Gm15055_chr6_52085133_F Primer3: not found at this Tm N.d. 0.42
mm4_intergenic_Skap2|Gm15055_chr6_52085133_R Primer3: not found at this Tm N.d. 0.42
mm4_intergenic_P2ry1|B430305J03Rik/Rap2b_chr3_61022111_F Primer3: not found at this Tm N.d. 0.42
mm4_intergenic_P2ry1|B430305J03Rik/Rap2b_chr3_61022111_R Primer3: not found at this Tm N.d. 0.42
mm3_intron_Vwa8_chr14_79066392_F TCGTCGGCAGCGTCTTGTGAAGAGCAGCCCTTGG 60.5 0.42
mm3_intron_Vwa8_chr14_79066392_R GTCTCGTGGGCTCGGGCAGCTGTGTCTAGCCCAAT 60.3 0.42
mm3_intergenic_2700046A07Rik|Apcdd1_chr18_62871898_F TCGTCGGCAGCGTCACCTCACCCACAAACCAGAT 58.8 0.41
mm3_intergenic_2700046A07Rik|Apcdd1_chr18_62871898_R GTCTCGTGGGCTCGGGGGGAAGTTAGGAGGCTGGT 60.9 0.41
mm4_intergenic_Gm11528|Phb_chr11_95666480_F TCGTCGGCAGCGTCGACCTGAATGACCGACTCCC 59.8 0.40
mm4_intergenic_Gm11528|Phb_chr11_95666480_R GTCTCGTGGGCTCGGGCACTGAGAGACTGCTAGGG 59.5 0.40
mm3_intergenic_Fmn2|Grem2_chr1_174825141_F TCGTCGGCAGCGTCAGCTGTCCCTTGTTCAACCA 59.4 0.40
mm3_intergenic_Fmn2|Grem2_chr1_174825141_R GTCTCGTGGGCTCGGCCACATTTACACCTACTTAACTGCC 59.8 0.40
mm3_intergenic_Barx1|Phf2_chr13_48759864_F Primer3: not found at this Tm N.d. 0.39
mm3_intergenic_Barx1|Phf2_chr13_48759864_R Primer3: not found at this Tm N.d. 0.39
mm4_intron_Sis_chr3_72911031_F Primer3: not found at this Tm N.d. 0.38
mm4_intron_Sis_chr3_72911031_R Primer3: not found at this Tm N.d. 0.38
mm3_intergenic_9530036O11Rik|Rnf32_chr5_29138728_F TCGTCGGCAGCGTCGCATGATGGGTCCCTAGCTC 59.9 0.38
mm3_intergenic_9530036O11Rik|Rnf32_chr5_29138728_R GTCTCGTGGGCTCGGTGTATTGCCTGCTTGAGAAGG 58.2 0.38
mm4_intergenic_Fryl|1700071G01Rik_chr5_73152813_F Primer3: not found at this Tm N.d. 0.37
mm4_intergenic_Fryl|1700071G01Rik_chr5_73152813_R Primer3: not found at this Tm N.d. 0.37
mm3_intergenic_Gm25814|Khdrbs2_chr1_32214583_F Primer3: not found at this Tm N.d. 0.37
mm3_intergenic_Gm25814|Khdrbs2_chr1_32214583_R Primer3: not found at this Tm N.d. 0.37
mm4_intron_Pcdh9_chr14_93673904_F Primer3: not found at this Tm N.d. 0.37
mm4_intron_Pcdh9_chr14_93673904_R Primer3: not found at this Tm N.d. 0.37
mm4_intergenic_Gm7792|AC126035.1_chr5_JH584299_random_203454_F Primer3: not found at this Tm N.d. 0.36
mm4_intergenic_Gm7792|AC126035.1_chr5_JH584299_random_203454_R Primer3: not found at this Tm N.d. 0.36
mm4_intergenic_Gm16513|Gm10424_chr5_95221459_F Primer3: not found at this Tm N.d. 0.36
mm4_intergenic_Gm16513|Gm10424_chr5_95221459_R Primer3: not found at this Tm N.d. 0.36
mm4_intergenic_Pdia5|Sema5b_chr16_35498052_F Primer3: not found at this Tm N.d. 0.36
mm4_intergenic_Pdia5|Sema5b_chr16_35498052_R Primer3: not found at this Tm N.d. 0.36
mm4_intergenic_Slc30a10|Lyplal1_chr1_185991950_F Primer3: not found at this Tm N.d. 0.36
mm4_intergenic_Slc30a10|Lyplal1_chr1_185991950_R Primer3: not found at this Tm N.d. 0.36
mm4_exon_Rasgrf1_chr9_90020297_F Primer3: not found at this Tm N.d. 0.35
mm4_exon_Rasgrf1_chr9_90020297_R Primer3: not found at this Tm N.d. 0.35
mm4_intergenic_Stim2|Gm24235_chr5_54437492_F TCGTCGGCAGCGTCCCCACCCCAATCATACATTCCT 59.8 0.35
mm4_intergenic_Stim2|Gm24235_chr5_54437492_R GTCTCGTGGGCTCGGCGTGCACTTTAGCAGTTGGT 59.0 0.35
mm4_intron_Ncor1_chr11_62361611_F Primer3: not found at this Tm N.d. 0.34
mm4_intron_Ncor1_chr11_62361611_R Primer3: not found at this Tm N.d. 0.34
mm4_intergenic_Mtpn|Gm23273_chr6_35748942_F TCGTCGGCAGCGTCGAGCCCCAAATCTTCCAGGT 59.6 0.33
mm4_intergenic_Mtpn|Gm23273_chr6_35748942_R GTCTCGTGGGCTCGGTCTGCCTAGCACAGAAAGCT 59.0 0.33
mm3_intron_Dpy19l3_chr7_35713012_F Primer3: not found at this Tm N.d. 0.33
mm3_intron_Dpy19l3_chr7_35713012_R Primer3: not found at this Tm N.d. 0.33
mm4_intron_Xylt1_chr7_117527976_F Primer3: not found at this Tm N.d. 0.32
mm4_intron_Xylt1_chr7_117527976_R Primer3: not found at this Tm N.d. 0.32
mm4_intergenic_Gm9578|Gm22891_chr14_82071353_F TCGTCGGCAGCGTCTCTTTGGCCATCTCTTGCCT 59.2 0.32
mm4_intergenic_Gm9578|Gm22891_chr14_82071353_R GTCTCGTGGGCTCGGCCCTCCTCCCACCACTTACT 60.2 0.32
mm4_intergenic_Robo3|Msantd2_chr9_37459844_F TCGTCGGCAGCGTCGAACCGGCCCCTAAGTTCTT 59.6 0.31
mm4_intergenic_Robo3|Msantd2_chr9_37459844_R GTCTCGTGGGCTCGGTGAAGCCTGGCTACGTGTAC 59.7 0.31
mm4_intron_Ntrk3_chr7_78369908_F TCGTCGGCAGCGTCACATTGTCCTTCTCAGGTAGTCA 58.8 0.30
mm4_intron_Ntrk3_chr7_78369908_R GTCTCGTGGGCTCGGACCTGTACCCCGAGAAAGGA 59.8 0.30
mm4_intergenic_Gm25094|Gm22312_chr6_93410765_F Primer3: not found at this Tm N.d. 0.30
mm4_intergenic_Gm25094|Gm22312_chr6_93410765_R Primer3: not found at this Tm N.d. 0.30
mm4_intergenic_Gm3756|Arhgap32_chr9_32111940_F TCGTCGGCAGCGTCTGCCTTTCTCGGAACCTGAA 59.2 0.29
mm4_intergenic_Gm3756|Arhgap32_chr9_32111940_R GTCTCGTGGGCTCGGGCAGCTGCTTCATGATCACG 59.9 0.29
mm4_intergenic_Kpna3|Spryd7_chr14_61497870_F Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Kpna3|Spryd7_chr14_61497870_R Primer3: not found at this Tm N.d. 0.28
mm3_intergenic_Gm15746|B630019A10Rik_chr16_23214292_F TCGTCGGCAGCGTCTTGTGTGGCTCATGACAGCT 59.8 0.28
mm3_intergenic_Gm15746|B630019A10Rik_chr16_23214292_R GTCTCGTGGGCTCGGTGGGTCTTGGCCATCTGAAC 59.9 0.28
mm4_intron_Pcca_chr14_122640812_F Primer3: not found at this Tm N.d. 0.28
mm4_intron_Pcca_chr14_122640812_R Primer3: not found at this Tm N.d. 0.28
mm3_intergenic_Ctbp2|Tex36_chr7_133215344_F Primer3: not found at this Tm N.d. 0.28
mm3_intergenic_Ctbp2|Tex36_chr7_133215344_R Primer3: not found at this Tm N.d. 0.28
mm4_intergenic_Kcnc2|Atxn7l3b/Gm26596_chr10_112875730_F TCGTCGGCAGCGTCTGTGGACTTTTCTGAGTTCTGGT 59.8 0.27
mm4_intergenic_Kcnc2|Atxn7l3b/Gm26596_chr10_112875730_R GTCTCGTGGGCTCGGTGAGAATGCTAGAATCTCTGGGT 58.7 0.27
mm4_intergenic_Parm1|Gm5558_chr5_91640562_F Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Parm1|Gm5558_chr5_91640562_R Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Mmp10|Mmp8_chr9_7520592_F Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Mmp10|Mmp8_chr9_7520592_R Primer3: not found at this Tm N.d. 0.27
mm4_intergenic_Nnmt|Zbtb16_chr9_48622227_F TCGTCGGCAGCGTCTCCTCCTTTTCCTCTCTGCCT 60.2 0.26
mm4_intergenic_Nnmt|Zbtb16_chr9_48622227_R GTCTCGTGGGCTCGGGGAACAGGGAAAGGATTGGGT 59.9 0.26
mm4_intergenic_Gm25702|Gm5473_chr15_63502472_F Primer3: not found at this Tm N.d. 0.26
mm4_intergenic_Gm25702|Gm5473_chr15_63502472_R Primer3: not found at this Tm N.d. 0.26
mm4_intergenic_Trim29|Pvrl1_chr9_43602355_F TCGTCGGCAGCGTCCTGATGAGGGCCAAAGGGAG 60.1 0.26
mm4_intergenic_Trim29|Pvrl1_chr9_43602355_R GTCTCGTGGGCTCGGGACCAACCAATCAGGAGGCA 59.9 0.26
mm4_intergenic_1700029N11Rik|Jarid2_chr13_44521489_F Primer3: not found at this Tm N.d. 0.25
mm4_intergenic_1700029N11Rik|Jarid2_chr13_44521489_R Primer3: not found at this Tm N.d. 0.25
mm4_intron_4933434I20Rik_chr8_83365788_F TCGTCGGCAGCGTCGGTGCGCTGTGCTTTAAACA 59.9 0.25
mm4_intron_4933434I20Rik_chr8_83365788_R GTCTCGTGGGCTCGGGCTTGGCTACAGACTAAGGCA 60.0 0.25
mm4_intron_Cadm2_chr16_66799343_F TCGTCGGCAGCGTCTGGCTGTTGTCATATACCACA 57.0 0.24
mm4_intron_Cadm2_chr16_66799343_R GTCTCGTGGGCTCGGGAGGCAGACCCCAAACAGAT 59.6 0.24
mm4_intron_Acsl6_chr11_54312981_F Primer3: not found at this Tm N.d. 0.24
mm4_intron_Acsl6_chr11_54312981_R Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Gm24246|Pik3c3_chr18_29447814_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Gm24246|Pik3c3_chr18_29447814_R Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Aym1|Wscd2_chr5_113470813_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Aym1|Wscd2_chr5_113470813_R Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Sec61b|NAMA_1_chr4_47517666_F Primer3: not found at this Tm N.d. 0.24
mm4_intergenic_Sec61b|NAMA_1_chr4_47517666_R Primer3: not found at this Tm N.d. 0.24
mm4_intron_Acad12_chr5_121615755_F Primer3: not found at this Tm N.d. 0.24
mm4_intron_Acad12_chr5_121615755_R Primer3: not found at this Tm N.d. 0.24
mm3_intergenic_Gm11845|Tmem64_chr4_15202524_F Primer3: not found at this Tm N.d. 0.23
mm3_intergenic_Gm11845|Tmem64_chr4_15202524_R Primer3: not found at this Tm N.d. 0.23
mm4_intron_4922502D21Rik_chr6_129330169_F TCGTCGGCAGCGTCGGCAGGCCATATGCTTAGACT 59.9 0.23
mm4_intron_4922502D21Rik_chr6_129330169_R GTCTCGTGGGCTCGGACTGCTTAATTCAGAAACCTTGAA 57.0 0.23
mm4_intron_Ccdc126_chr6_49332401_F TCGTCGGCAGCGTCTGCCTTCTCTCTCTTCTCCT 57.0 0.23
mm4_intron_Ccdc126_chr6_49332401_R GTCTCGTGGGCTCGGTGGAGAACTGAGAACACGGC 59.9 0.23
mm4_intron_Wbp11_chr6_136824443_F TCGTCGGCAGCGTCGGACCATCATGCGCTGTTTT 59.4 0.23
mm4_intron_Wbp11_chr6_136824443_R GTCTCGTGGGCTCGGACTCTTGAGGCAAAGGAAGGT 59.2 0.23
mm4_intron_Gm527_chr12_64918376_F TCGTCGGCAGCGTCAATGCAGTGTGATCCCTGGG 60.0 0.23
mm4_intron_Gm527_chr12_64918376_R GTCTCGTGGGCTCGGTACTGGGCTGCCTCTTACCT 59.9 0.23
mm4_intron_Txnrd3_chr6_89659539_F TCGTCGGCAGCGTCGACAGAGGCAGGCCATGAC 60.4 0.23
mm4_intron_Txnrd3_chr6_89659539_R GTCTCGTGGGCTCGGATGACATAAGGGCCTGCCTG 59.8 0.23
mm4_intron_Agbl4_chr4_111049619_F Primer3: not found at this Tm N.d. 0.23
mm4_intron_Agbl4_chr4_111049619_R Primer3: not found at this Tm N.d. 0.23
mm4_intergenic_Ube2u|Gm12698_chr4_100524998_F TCGTCGGCAGCGTCGGACTGCAGATTCCCGAGTC 60.1 0.23
mm4_intergenic_Ube2u|Gm12698_chr4_100524998_R GTCTCGTGGGCTCGGAAATCCTCATGGGTGCAGGG 60.0 0.23
mm4_intergenic_Gm24697|Gm11404_chr4_69155771_F Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm24697|Gm11404_chr4_69155771_R Primer3: not found at this Tm N.d. 0.22
mm4_intron_Fam114a2_chr11_57517436_F TCGTCGGCAGCGTCGCTGCCTAGTGTTCTCCCTC 59.8 0.22
mm4_intron_Fam114a2_chr11_57517436_R GTCTCGTGGGCTCGGCCCATAGAGTCTAGGCAACACC 59.8 0.22
mm4_intergenic_Gm12689|Gm12685_chr4_99310790_F TCGTCGGCAGCGTCTCAGTGGCTCTTGTTGGCTT 59.8 0.22
mm4_intergenic_Gm12689|Gm12685_chr4_99310790_R GTCTCGTGGGCTCGGGGGCAACTCCACTTGGATGA 59.9 0.22
mm4_intergenic_Phlda1|4933440J02Rik_chr10_111571251_F Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Phlda1|4933440J02Rik_chr10_111571251_R Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm24398|Xpo1_chr11_23193520_F Primer3: not found at this Tm N.d. 0.22
mm4_intergenic_Gm24398|Xpo1_chr11_23193520_R Primer3: not found at this Tm N.d. 0.22
mm3_intergenic_Gm16190|Pnpla1_chr17_28867898_F TCGTCGGCAGCGTCGGGGCCAGGGTAGAGTTCTA 60.0 0.22
mm3_intergenic_Gm16190|Pnpla1_chr17_28867898_R GTCTCGTGGGCTCGGTACCTCAGGGCCATCAGTCC 60.6 0.22
mm4_intron_Cnot2_chr10_116496406_F TCGTCGGCAGCGTCAGAGAAAGTGGGGATGCTGC 60.0 0.22
mm4_intron_Cnot2_chr10_116496406_R GTCTCGTGGGCTCGGTGGAAGCAAACCGTCTCAAA 57.9 0.22
mm4_intergenic_Cnih3|Gm16547_chr1_181354746_F Primer3: not found at this Tm N.d. 0.21
mm4_intergenic_Cnih3|Gm16547_chr1_181354746_R Primer3: not found at this Tm N.d. 0.21
mm4_intron_Clec4a2_chr6_123123051_F TCGTCGGCAGCGTCTGAACTTTGCCTTCCCCACA 59.7 0.21
mm4_intron_Clec4a2_chr6_123123051_R GTCTCGTGGGCTCGGGTGGACCATTAGCCCTCACC 60.1 0.21
mm4_intron_Tgm4_chr9_123046649_F TCGTCGGCAGCGTCAGACTGTCTTCGTGTGGCTG 59.9 0.21
mm4_intron_Tgm4_chr9_123046649_R GTCTCGTGGGCTCGGTTCAGCTGAGGTGAACCCAC 59.8 0.21
mm4_intergenic_Kif7|Plin1_chr7_79718077_F Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Kif7|Plin1_chr7_79718077_R Primer3: not found at this Tm N.d. 0.20
mm4_intron_3110047P20Rik_chr5_63796418_F Primer3: not found at this Tm N.d. 0.20
mm4_intron_3110047P20Rik_chr5_63796418_R Primer3: not found at this Tm N.d. 0.20
mm4_intergenic_Sphkap|Gm6374_chr1_83311124_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Sphkap|Gm6374_chr1_83311124_R Primer3: not found at this Tm N.d. 0.19
mm3_intron_Thsd7b_chr1_129671360_F Primer3: not found at this Tm N.d. 0.19
mm3_intron_Thsd7b_chr1_129671360_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm26181|Triml1_chr8_42766911_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm26181|Triml1_chr8_42766911_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm14005|Gm14010_chr2_128422769_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Gm14005|Gm14010_chr2_128422769_R Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Magea2|1700042B14Rik_chrX_155113522_F Primer3: not found at this Tm N.d. 0.19
mm4_intergenic_Magea2|1700042B14Rik_chrX_155113522_R Primer3: not found at this Tm N.d. 0.19
mm4_intron_Trim38_chr13_23784783_F TCGTCGGCAGCGTCGGGGAGTAGTTTGACAAGGACA 59.6 0.19
mm4_intron_Trim38_chr13_23784783_R GTCTCGTGGGCTCGGAGGTACAAAGAAAAGGCCAGGA 59.5 0.19
mm4_intergenic_Fbxl5|Bst1_chr5_43791450_F Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_Fbxl5|Bst1_chr5_43791450_R Primer3: not found at this Tm N.d. 0.18
mm4_intron_Il13ra2_chrX_147400250_F Primer3: not found at this Tm N.d. 0.18
mm4_intron_Il13ra2_chrX_147400250_R Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_F830001A07Rik|Rora_chr9_68874655_F Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_F830001A07Rik|Rora_chr9_68874655_R Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_mmu-mir-6356|4930546C10Rik_chr18_68869855_F Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_mmu-mir-6356|4930546C10Rik_chr18_68869855_R Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_Gm25392|Gm24238_chr18_19724354_F Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_Gm25392|Gm24238_chr18_19724354_R Primer3: not found at this Tm N.d. 0.18
mm4_intergenic_Gm23752|Gm24815_chr12_7286213_F TCGTCGGCAGCGTCGCTCATGGTCTACAATTGTGCC 59.9 0.18
mm4_intergenic_Gm23752|Gm24815_chr12_7286213_R GTCTCGTGGGCTCGGTGTTAATTCTGCTTGGTAGTGATGG 59.3 0.18
mm4_intron_Acsl1_chr8_46476564_F Primer3: not found at this Tm N.d. 0.17
mm4_intron_Acsl1_chr8_46476564_R Primer3: not found at this Tm N.d. 0.17
mm4_intergenic_Gm5839|Gm25440_chr18_48995152_F TCGTCGGCAGCGTCTGTGTGCCTATAGCCGAGAG 58.9 0.17
mm4_intergenic_Gm5839|Gm25440_chr18_48995152_R GTCTCGTGGGCTCGGTCGAAGATACTGGATGATCAAGGT 59.1 0.17
mm4_intergenic_A930031H19Rik|Gm25261_chr4_131144431_F TCGTCGGCAGCGTCCTCTCCTCCTCCCGCTAAGA 59.8 0.17
mm4_intergenic_A930031H19Rik|Gm25261_chr4_131144431_R GTCTCGTGGGCTCGGAGGGGAGATCTTAGTGGGGA 58.6 0.17
mm4_intron_Gabrb1_chr5_71862817_F TCGTCGGCAGCGTCTGAGTGAAGAGAGCTTGGGA 57.9 0.17
mm4_intron_Gabrb1_chr5_71862817_R GTCTCGTGGGCTCGGCCCTCTCTATGATGTGGCACA 59.2 0.17
mm4_intergenic_Gm6634|Gm8604_chr3_71208907_F Primer3: not found at this Tm N.d. 0.17
mm4_intergenic_Gm6634|Gm8604_chr3_71208907_R Primer3: not found at this Tm N.d. 0.17
mm4_intron_Fzr1_chr10_81376993_F TCGTCGGCAGCGTCCCATGAGAGCTAGAGCCACC 59.6 0.17
mm4_intron_Fzr1_chr10_81376993_R GTCTCGTGGGCTCGGCCCAGTCCTAGCTCCTTCCT 60.0 0.17
mm4_intron_Agps_chr2_75870271_F Primer3: not found at this Tm N.d. 0.17
mm4_intron_Agps_chr2_75870271_R Primer3: not found at this Tm N.d. 0.17
mm4_intergenic_Gm11820|Gm26250_chr4_13247129_F Primer3: not found at this Tm N.d. 0.17
mm4_intergenic_Gm11820|Gm26250_chr4_13247129_R Primer3: not found at this Tm N.d. 0.17
mm4_intron_Sil1_chr18_35347122_F Primer3: not found at this Tm N.d. 0.17
mm4_intron_Sil1_chr18_35347122_R Primer3: not found at this Tm N.d. 0.17
mm4_intergenic_Gm23987|Fam135b_chr15_70438359_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm23987|Fam135b_chr15_70438359_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_St8sia6|Ptpla_chr2_13838813_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_St8sia6|Ptpla_chr2_13838813_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm25454|n-R5s165_chr6_112145971_F Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Gm25454|n-R5s165_chr6_112145971_R Primer3: not found at this Tm N.d. 0.16
mm4_intron_Moxd1_chr10_24238180_F Primer3: not found at this Tm N.d. 0.16
mm4_intron_Moxd1_chr10_24238180_R Primer3: not found at this Tm N.d. 0.16
mm4_intergenic_Npy1r|Naf1_chr8_66752032_F Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Npy1r|Naf1_chr8_66752032_R Primer3: not found at this Tm N.d. 0.15
mm4_intron_Rps6ka2_chr17_7286131_F Primer3: not found at this Tm N.d. 0.15
mm4_intron_Rps6ka2_chr17_7286131_R Primer3: not found at this Tm N.d. 0.15
mm4_intergenic_Gm21614|Gm23249_chr12_93328482_F TCGTCGGCAGCGTCAAGGGGATCATCTCGTTGCA 59.0 0.15
mm4_intergenic_Gm21614|Gm23249_chr12_93328482_R GTCTCGTGGGCTCGGAGTGATAAACCAAAGCCCAAATT 57.1 0.15
mm4_intron_Psma6_chr12_55411816_F Primer3: not found at this Tm N.d. 0.15
mm4_intron_Psma6_chr12_55411816_R Primer3: not found at this Tm N.d. 0.15
mm4_intron_Degs1_chr1_182277750_F TCGTCGGCAGCGTCGGGACTGTGTAATAAATGCCAGG 59.3 0.15
mm4_intron_Degs1_chr1_182277750_R GTCTCGTGGGCTCGGTCCCCTGGGTTACGTCGATA 59.7 0.15
mm4_intron_Fhad1_chr4_141902226_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Fhad1_chr4_141902226_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Gm12114_chr11_33071986_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Gm12114_chr11_33071986_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Il24_chr1_130882788_F TCGTCGGCAGCGTCCAGGGTGAGGACAAAGAGGC 60.3 0.14
mm4_intron_Il24_chr1_130882788_R GTCTCGTGGGCTCGGGGCTCATGTCAGCTCAGTGA 59.7 0.14
mm4_intron_Ago2_chr15_73167071_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Ago2_chr15_73167071_R Primer3: not found at this Tm N.d. 0.14
mm4_exon_Rragd_chr4_33013030_F TCGTCGGCAGCGTCAAGTTCTTGGCGCTCGTTTG 59.6 0.14
mm4_exon_Rragd_chr4_33013030_R GTCTCGTGGGCTCGGTCAACAGGCGACAGATGCAA 60.2 0.14
mm4_intron_Pde4b_chr4_102502920_F TCGTCGGCAGCGTCACCAAGACTGAGCACCAAGG 59.8 0.14
mm4_intron_Pde4b_chr4_102502920_R GTCTCGTGGGCTCGGGGGAAGCTCTCTGCACACTA 59.1 0.14
mm4_intron_Prep_chr10_45088702_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Prep_chr10_45088702_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Gm14082|Gm11644_chr2_143341488_F Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Gm14082|Gm11644_chr2_143341488_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Cyp4a29-ps_chr4_115252040_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Cyp4a29-ps_chr4_115252040_R Primer3: not found at this Tm N.d. 0.14
mm4_intron_Cyp4a28-ps_chr4_115141109_F Primer3: not found at this Tm N.d. 0.14
mm4_intron_Cyp4a28-ps_chr4_115141109_R Primer3: not found at this Tm N.d. 0.14
mm3_intron_Dnm3_chr1_162369992_F TCGTCGGCAGCGTCCCTGCTCCTCACTTCCCATG 60.1 0.14
mm3_intron_Dnm3_chr1_162369992_R GTCTCGTGGGCTCGGACGAGGACATAGGCCTCCTT 60.0 0.14
mm3_intergenic_Sh3gl2|Gm12680_chr4_85402700_F Primer3: not found at this Tm N.d. 0.14
mm3_intergenic_Sh3gl2|Gm12680_chr4_85402700_R Primer3: not found at this Tm N.d. 0.14
mm4_intergenic_Gm15975|Gm23896_chr5_56683708_F Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Gm15975|Gm23896_chr5_56683708_R Primer3: not found at this Tm N.d. 0.13
mm4_intron_Chuk_chr19_44093008_F TCGTCGGCAGCGTCGTATGTTGGGTGGTGGGGAG 60.0 0.13
mm4_intron_Chuk_chr19_44093008_R GTCTCGTGGGCTCGGTCCTTGGTGTGTAAGCGGTG 60.2 0.13
mm4_intergenic_Irx2|Irx4_chr13_73208295_F Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Irx2|Irx4_chr13_73208295_R Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Gm13921|Ldlrad3_chr2_102177275_F Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Gm13921|Ldlrad3_chr2_102177275_R Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_C230035I16Rik|Btn1a1_chr13_23455848_F Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_C230035I16Rik|Btn1a1_chr13_23455848_R Primer3: not found at this Tm N.d. 0.13
mm4_intron_RP23-394M5.2_chr8_87372482_F Primer3: not found at this Tm N.d. 0.13
mm4_intron_RP23-394M5.2_chr8_87372482_R Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Sh3tc1|Ablim2_chr5_35757032_F TCGTCGGCAGCGTCCTGTGCCTGTTCATGCAGTG 59.7 0.13
mm4_intergenic_Sh3tc1|Ablim2_chr5_35757032_R GTCTCGTGGGCTCGGGATCCTGCCTCGTATCGGTG 60.0 0.13
mm4_intergenic_Ccdc147|Sorcs3_chr19_48037966_F Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Ccdc147|Sorcs3_chr19_48037966_R Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Cgnl1|RP23-79K5.1_chr9_71792199_F Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Cgnl1|RP23-79K5.1_chr9_71792199_R Primer3: not found at this Tm N.d. 0.13
mm4_intron_Gabra1_chr11_42165381_F Primer3: not found at this Tm N.d. 0.13
mm4_intron_Gabra1_chr11_42165381_R Primer3: not found at this Tm N.d. 0.13
mm4_intergenic_Ccnd1|Tpcn2_chr7_145109620_F TCGTCGGCAGCGTCAGCTGGTGGTAAGGAAAGCC 59.9 0.13
mm4_intergenic_Ccnd1|Tpcn2_chr7_145109620_R GTCTCGTGGGCTCGGTACCTTCTACCTGGCCTCCC 60.0 0.13
mm4_intergenic_Gm26937|Lipi_chr16_75112005_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm26937|Lipi_chr16_75112005_R Primer3: not found at this Tm N.d. 0.12
mm3_intergenic_Bmf|Gm14016_chr2_118582427_F Primer3: not found at this Tm N.d. 0.12
mm3_intergenic_Bmf|Gm14016_chr2_118582427_R Primer3: not found at this Tm N.d. 0.12
mm4_exon_Cyp2b19_chr7_26759325_F TCGTCGGCAGCGTCTCCAATGTGACCCAACCACC 60.1 0.12
mm4_exon_Cyp2b19_chr7_26759325_R GTCTCGTGGGCTCGGTCTCATGGTGGCCAGAGAGA 59.9 0.12
mm4_intergenic_Idh2|Sema4b_chr7_80182402_F TCGTCGGCAGCGTCCCTGTCAAGGGCCAATACTACT 59.4 0.12
mm4_intergenic_Idh2|Sema4b_chr7_80182402_R GTCTCGTGGGCTCGGGGAGAAGGGTGTGACAGAGC 60.0 0.12
mm2_intergenic_Gm14514|Efhc2_chrX_17259623_F Primer3: not found at this Tm N.d. 0.12
mm2_intergenic_Gm14514|Efhc2_chrX_17259623_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Gm11077|Pde3a_chr6_141048792_F TCGTCGGCAGCGTCTCTGTGACCTGTCGACTAGA 57.1 0.12
mm4_intergenic_Gm11077|Pde3a_chr6_141048792_R GTCTCGTGGGCTCGGCATGTTCCCCTCCAGGCTC 59.7 0.12
mm4_intergenic_Atp6v1h|Oprk1_chr1_5312857_F Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Atp6v1h|Oprk1_chr1_5312857_R Primer3: not found at this Tm N.d. 0.12
mm4_intergenic_Rngtt|Gm12398_chr4_33594839_F TCGTCGGCAGCGTCAAAGCTCTTAGAGGCCGCTG 60.1 0.12
mm4_intergenic_Rngtt|Gm12398_chr4_33594839_R GTCTCGTGGGCTCGGTCTGTGTGTCCCTGCTCTCT 60.1 0.12
mm4_intergenic_Fam189a1|Ndnl2_chr7_64863107_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Fam189a1|Ndnl2_chr7_64863107_R Primer3: not found at this Tm N.d. 0.11
mm4_intron_Map2k6_chr11_110485237_F TCGTCGGCAGCGTCGGCATGCTTGTTCTGAGTCAC 59.8 0.11
mm4_intron_Map2k6_chr11_110485237_R GTCTCGTGGGCTCGGACCAAGTGACTTGTCAAGGTT 57.6 0.11
mm4_intergenic_Gm26087|Gm12388_chr4_40009790_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm26087|Gm12388_chr4_40009790_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Epha4|Gm26263_chr1_77776846_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Epha4|Gm26263_chr1_77776846_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm9257|Gm22189_chr12_19811716_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm9257|Gm22189_chr12_19811716_R Primer3: not found at this Tm N.d. 0.11
mm3_intergenic_Gm26674/Sash1|Gm9930_chr10_9355263_F TCGTCGGCAGCGTCCTGAGAGCCTGCATCAAGGA 59.4 0.11
mm3_intergenic_Gm26674/Sash1|Gm9930_chr10_9355263_R GTCTCGTGGGCTCGGAGAGCACACAGTCCTGCTTG 60.2 0.11
mm4_intergenic_Gm11890|Gm11892_chr4_23995007_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm11890|Gm11892_chr4_23995007_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Abca5|Map2k6_chr11_110347594_F TCGTCGGCAGCGTCGCAACTACAAGCCGCACAAT 59.7 0.11
mm4_intergenic_Abca5|Map2k6_chr11_110347594_R GTCTCGTGGGCTCGGAGGCAAGATCTCTTTGAGTTTGG 58.9 0.11
mm4_intergenic_Wnt4|Cdc42_chr4_137301664_F TCGTCGGCAGCGTCTGACAGGGGAGGAGAGAAGG 59.9 0.11
mm4_intergenic_Wnt4|Cdc42_chr4_137301664_R GTCTCGTGGGCTCGGGCTAATTGCCTCCGAAGTGC 59.6 0.11
mm4_intergenic_Gm23558|Galc_chr12_97455536_F TCGTCGGCAGCGTCTGTGGGACAGATGGGGAAGA 60.1 0.11
mm4_intergenic_Gm23558|Galc_chr12_97455536_R GTCTCGTGGGCTCGGCACACTCTGTGCCCATCAAA 58.3 0.11
mm4_intron_Rell1_chr5_63931832_F Primer3: not found at this Tm N.d. 0.11
mm4_intron_Rell1_chr5_63931832_R Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_App|Cyyr1_chr16_85198316_F TCGTCGGCAGCGTCGCCATTCCTCCCACAACCTT 60.2 0.11
mm4_intergenic_App|Cyyr1_chr16_85198316_R GTCTCGTGGGCTCGGTTATTGAGGGAGTGCCTCGC 59.8 0.11
mm4_intron_Egfem1_chr3_29211271_F TCGTCGGCAGCGTCTGGCCTTTTCTAGGTTTAGATCA 57.2 0.11
mm4_intron_Egfem1_chr3_29211271_R GTCTCGTGGGCTCGGAGGATCATATGAGAACCCACAGG 59.3 0.11
mm4_intergenic_Gm5976|Tmem194b_chr1_52520336_F Primer3: not found at this Tm N.d. 0.11
mm4_intergenic_Gm5976|Tmem194b_chr1_52520336_R Primer3: not found at this Tm N.d. 0.11
mm4_exon_Tbc1d9b_chr11_50168203_F TCGTCGGCAGCGTCTGTGGAAGCACTGCTACAGG 59.9 0.10
mm4_exon_Tbc1d9b_chr11_50168203_R GTCTCGTGGGCTCGGTAACAAGCAAGGGTGGGCAC 60.8 0.10
mm4_intron_Fgfr2_chr7_130226625_F TCGTCGGCAGCGTCGTCCGTCAGTCTGGGAGATG 59.5 0.10
mm4_intron_Fgfr2_chr7_130226625_R GTCTCGTGGGCTCGGAGACAGTGGCATTGCAAGGT 60.1 0.10
mm4_intron_Nr3c2_chr8_77241233_F TCGTCGGCAGCGTCCTCCAGTGAGGGTCCAGTGA 60.5 0.10
mm4_intron_Nr3c2_chr8_77241233_R GTCTCGTGGGCTCGGAAGGACCAAGCATCCGTGAG 60.0 0.10
mm4_intergenic_Vmn1r202|Gm11300/Vmn1r203_chr13_22502460_F TCGTCGGCAGCGTCAATTGGACATGAGCACCGTG 58.8 0.10
mm4_intergenic_Vmn1r202|Gm11300/Vmn1r203_chr13_22502460_R GTCTCGTGGGCTCGGTCATGGCTTGGAAACTGAATGA 58.2 0.10
mm4_intergenic_Vmn1r-ps116|Gm23774_chr13_22875430_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Vmn1r-ps116|Gm23774_chr13_22875430_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_4921524J17Rik/1700051O22Rik|Gpt2_chr8_85462662_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_4921524J17Rik/1700051O22Rik|Gpt2_chr8_85462662_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm15387|Bai1_chr15_74300684_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm15387|Bai1_chr15_74300684_R Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Gm11681|4933434M16Rik_chr11_112800781_F TCGTCGGCAGCGTCTGCCAATAACACACCCTCCC 59.9 0.10
mm4_intergenic_Gm11681|4933434M16Rik_chr11_112800781_R GTCTCGTGGGCTCGGTCATGTGATTCTCAGCTAGCGT 59.5 0.10
mm4_intergenic_Hs1bp3|Rhob_chr12_8389466_F TCGTCGGCAGCGTCTTAGCCCAATCCCCTCATGC 59.8 0.10
mm4_intergenic_Hs1bp3|Rhob_chr12_8389466_R GTCTCGTGGGCTCGGCCCAGGTCAAAGCACCAGAT 59.9 0.10
mm4_exon_Egflam_chr15_7316474_F TCGTCGGCAGCGTCCGCAGGGACTTATCTGAACCA 59.7 0.10
mm4_exon_Egflam_chr15_7316474_R GTCTCGTGGGCTCGGACCACCATAGCCACACCATT 59.2 0.10
mm4_intergenic_Osmr|Lifr_chr15_6982345_F Primer3: not found at this Tm N.d. 0.10
mm4_intergenic_Osmr|Lifr_chr15_6982345_R Primer3: not found at this Tm N.d. 0.10
mm4_intron_Sgms1_chr19_32136134_F TCGTCGGCAGCGTCAGCATAACCACTGAGGACTGA 58.4 0.10
mm4_intron_Sgms1_chr19_32136134_R GTCTCGTGGGCTCGGTCTCCCTCTGGCTGTGTCAT 60.2 0.10
mm4_intron_Tmod2_chr9_75610122_F Primer3: not found at this Tm N.d. 0.09
mm4_intron_Tmod2_chr9_75610122_R Primer3: not found at this Tm N.d. 0.09
mm3_intergenic_Gm5828|Jph1_chr1_16814262_F Primer3: not found at this Tm N.d. 0.09
mm3_intergenic_Gm5828|Jph1_chr1_16814262_R Primer3: not found at this Tm N.d. 0.09
mm4_intron_Kcnip4_chr5_48839408_F Primer3: not found at this Tm N.d. 0.09
mm4_intron_Kcnip4_chr5_48839408_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm25602|Tbc1d32_chr10_54916575_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm25602|Tbc1d32_chr10_54916575_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm14979|Gm22552_chrX_133237438_F Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Gm14979|Gm22552_chrX_133237438_R Primer3: not found at this Tm N.d. 0.09
mm4_intergenic_Pced1b|Rpap3_chr15_97591440_F TCGTCGGCAGCGTCCCAGCGTTAAGGAGAGGCAA 60.0 0.09
mm4_intergenic_Pced1b|Rpap3_chr15_97591440_R GTCTCGTGGGCTCGGCTCTGAGCCTTCTTGTGCCA 59.9 0.09
mm4_intron_Ift172_chr5_31274292_F Primer3: not found at this Tm N.d. 0.09
mm4_intron_Ift172_chr5_31274292_R Primer3: not found at this Tm N.d. 0.09
mm3_intron_Rftn1_chr17_50117690_F TCGTCGGCAGCGTCGACCTGCCTGACACTCAACA 59.8 0.09
mm3_intron_Rftn1_chr17_50117690_R GTCTCGTGGGCTCGGGATAGGGAGGGAGGGGACAG 60.1 0.09
mm4_intergenic_Gm9931|Gm22966_chr1_147771121_F TCGTCGGCAGCGTCGAGCAAAGCACAGAGGACCA 60.2 0.09
mm4_intergenic_Gm9931|Gm22966_chr1_147771121_R GTCTCGTGGGCTCGGACTGATGTCTGATTGGGGTCT 58.4 0.09
mm3_intergenic_Mapk4/Gm9925|Ska1_chr18_74092406_F Primer3: not found at this Tm N.d. 0.09
mm3_intergenic_Mapk4/Gm9925|Ska1_chr18_74092406_R Primer3: not found at this Tm N.d. 0.09
mm4_intron_Lmna_chr3_88487775_F TCGTCGGCAGCGTCTGAGCAGCATGAGAGAGCAG 59.8 0.09
mm4_intron_Lmna_chr3_88487775_R GTCTCGTGGGCTCGGTACCTAGGTGTGCTGCCTGT 60.5 0.09
mm4_intron_Hs6st3_chr14_119437068_F TCGTCGGCAGCGTCTCTGCTTGTCTGGAGATATGCT 58.9 0.08
mm4_intron_Hs6st3_chr14_119437068_R GTCTCGTGGGCTCGGTCATGCAAAGGTAAGGGCTT 57.3 0.08
mm4_intron_Myt1l_chr12_29830820_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Myt1l_chr12_29830820_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm22536|Gm6632_chr5_58748406_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm22536|Gm6632_chr5_58748406_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Zfp217|Gm17619_chr2_170171745_F TCGTCGGCAGCGTCGCTAGCTAGCCTGACGTGG 59.9 0.08
mm4_intergenic_Zfp217|Gm17619_chr2_170171745_R GTCTCGTGGGCTCGGGTCAATGGACACCATCTTACATGG 59.6 0.08
mm4_intergenic_Olfr1487|Olfr1489_chr19_13620384_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Olfr1487|Olfr1489_chr19_13620384_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Fstl1_chr16_37828075_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Fstl1_chr16_37828075_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Mtdh_chr15_34127305_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Mtdh_chr15_34127305_R Primer3: not found at this Tm N.d. 0.08
mm3_intron_Clstn2_chr9_97484615_F TCGTCGGCAGCGTCGCTCTGTTTTGCCCTTCCCT 60.5 0.08
mm3_intron_Clstn2_chr9_97484615_R GTCTCGTGGGCTCGGCTTTTGCACCACTGGAACCG 59.9 0.08
mm4_intergenic_Gm23794|Nhs_chrX_162152400_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm23794|Nhs_chrX_162152400_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Ryr3_chr2_112872913_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Ryr3_chr2_112872913_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Slc30a10|Lyplal1_chr1_186006714_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Slc30a10|Lyplal1_chr1_186006714_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm14453|Rbm38/Gm14453_chr2_173028054_F TCGTCGGCAGCGTCTAATGGATGGCCTTGGCCTT 59.3 0.08
mm4_intergenic_Gm14453|Rbm38/Gm14453_chr2_173028054_R GTCTCGTGGGCTCGGCCCACCTGAACCTGCCTAAA 59.5 0.08
mm4_exon_Grid1_chr14_34822537_F Primer3: not found at this Tm N.d. 0.08
mm4_exon_Grid1_chr14_34822537_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Fnip1|Gm24198_chr11_54451522_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Fnip1|Gm24198_chr11_54451522_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm22825|Zfhx3_chr8_108436288_F Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm22825|Zfhx3_chr8_108436288_R Primer3: not found at this Tm N.d. 0.08
mm4_intron_Tceal3_chrX_136641913_F TCGTCGGCAGCGTCCGTCCTGTGCACATTTTCCC 59.7 0.08
mm4_intron_Tceal3_chrX_136641913_R GTCTCGTGGGCTCGGCCTCAGGTCTTGACAAGGCA 59.6 0.08
mm4_intron_Fut10_chr8_31195498_F Primer3: not found at this Tm N.d. 0.08
mm4_intron_Fut10_chr8_31195498_R Primer3: not found at this Tm N.d. 0.08
mm4_intergenic_Gm13529|9430024E24Rik_chr2_33679589_F TCGTCGGCAGCGTCCTGTGCCCCAGAGAGGACT 60.6 0.07
mm4_intergenic_Gm13529|9430024E24Rik_chr2_33679589_R GTCTCGTGGGCTCGGTTCATGACAGCAGAGGCAGG 60.0 0.07
mm4_intron_Smg6_chr11_74973363_F TCGTCGGCAGCGTCGCGCTCACGAGAACCTTTTG 60.1 0.07
mm4_intron_Smg6_chr11_74973363_R GTCTCGTGGGCTCGGGTCTGGGAACTCTCATGCCC 60.1 0.07
mm4_intron_Dmd_chrX_85070940_F TCGTCGGCAGCGTCTGTTCTGTTCATTGATGCCATC 57.2 0.07
mm4_intron_Dmd_chrX_85070940_R GTCTCGTGGGCTCGGACAGGCCCCAAGATCATTTT 57.3 0.07
mm4_intron_Tceal3_chrX_136620256_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Tceal3_chrX_136620256_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Coro1c|Gm22056_chr5_113911989_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Coro1c|Gm22056_chr5_113911989_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm12418|Gm12419_chr4_84920728_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm12418|Gm12419_chr4_84920728_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Fat4|Gm9845_chr3_39270164_F TCGTCGGCAGCGTCTGTCAGAGGAAAACAGTAGCAGA 59.3 0.07
mm4_intergenic_Fat4|Gm9845_chr3_39270164_R GTCTCGTGGGCTCGGGGTTTCCTTTTGTTTTCCAGCCT 60.1 0.07
mm4_intergenic_B230110C06Rik|Oxsm_chr14_15720609_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_B230110C06Rik|Oxsm_chr14_15720609_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm25255|Csmd1_chr8_15563109_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm25255|Csmd1_chr8_15563109_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Minpp1|Papss2_chr19_32553769_F TCGTCGGCAGCGTCCAGCAGCTTCAAGGTCTCCA 59.9 0.07
mm4_intergenic_Minpp1|Papss2_chr19_32553769_R GTCTCGTGGGCTCGGCTCTCTCTCATGCTGCCCTG 59.8 0.07
mm4_intergenic_2810032G03Rik|Gm24758_chr12_5572747_F TCGTCGGCAGCGTCACCTGGGACCATGCGATTTT 59.9 0.07
mm4_intergenic_2810032G03Rik|Gm24758_chr12_5572747_R GTCTCGTGGGCTCGGCCCCTCAGGCTCAGGAGATA 59.8 0.07
mm3_intron_Tenm2_chr11_37024130_F Primer3: not found at this Tm N.d. 0.07
mm3_intron_Tenm2_chr11_37024130_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Cnksr3|Ulbp1_chr10_7225325_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Cnksr3|Ulbp1_chr10_7225325_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gm23185|Gm23848_chr15_49464083_F TCGTCGGCAGCGTCGAATTCCTGTTGGCTGTGGC 59.7 0.07
mm4_intergenic_Gm23185|Gm23848_chr15_49464083_R GTCTCGTGGGCTCGGGAAGGCCATGAGGAGACACA 59.3 0.07
mm4_intergenic_Pi15|Gm16070_chr1_17666875_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Pi15|Gm16070_chr1_17666875_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Ddx18|Gm15394_chr1_121748885_F Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Ddx18|Gm15394_chr1_121748885_R Primer3: not found at this Tm N.d. 0.07
mm4_intron_Aff1_chr5_103747493_F Primer3: not found at this Tm N.d. 0.07
mm4_intron_Aff1_chr5_103747493_R Primer3: not found at this Tm N.d. 0.07
mm4_intergenic_Gopc/Gm26741|Gopc_chr10_52364688_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Gopc/Gm26741|Gopc_chr10_52364688_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Tec|Gm9870/Slain2_chr5_72874143_F TCGTCGGCAGCGTCGGACCCCTGAGGAGAAGAGA 59.6 0.06
mm4_intergenic_Tec|Gm9870/Slain2_chr5_72874143_R GTCTCGTGGGCTCGGTGGATCCATTTCCAGCAACTCA 59.9 0.06
mm4_intergenic_Gm11675|Gm11676_chr11_111305027_F TCGTCGGCAGCGTCTCTCCTGAAACCATTTCTTCTCT 57.1 0.06
mm4_intergenic_Gm11675|Gm11676_chr11_111305027_R GTCTCGTGGGCTCGGCCTTCTGACCATCTTTCCCC 57.5 0.06
mm4_intergenic_Ppm1e|Gm11490_chr11_87295626_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Ppm1e|Gm11490_chr11_87295626_R Primer3: not found at this Tm N.d. 0.06
mm4_exon_Tnfaip8_chr18_50092079_F Primer3: not found at this Tm N.d. 0.06
mm4_exon_Tnfaip8_chr18_50092079_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Rnf157|Ubald2_chr11_116418319_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Rnf157|Ubald2_chr11_116418319_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Cdhr2_chr13_54711623_F TCGTCGGCAGCGTCCTGTGTGGACAGGAAGTGGC 60.8 0.06
mm4_intron_Cdhr2_chr13_54711623_R GTCTCGTGGGCTCGGACTCTGCCCTACCATCCCTT 59.9 0.06
mm4_intergenic_Gm12122|Slit3_chr11_35497097_F TCGTCGGCAGCGTCTGACAGTGTCAGCTACGACA 58.6 0.06
mm4_intergenic_Gm12122|Slit3_chr11_35497097_R GTCTCGTGGGCTCGGGCAATCTTCCCTCCCCTGAG 59.8 0.06
mm4_intergenic_Sh3gl2|Gm12680_chr4_85510696_F Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Sh3gl2|Gm12680_chr4_85510696_R Primer3: not found at this Tm N.d. 0.06
mm3_intergenic_Gm23681|Peli1_chr11_21038506_F TCGTCGGCAGCGTCCCTCACCTGGCACTATAGGC 59.6 0.06
mm3_intergenic_Gm23681|Peli1_chr11_21038506_R GTCTCGTGGGCTCGGACCACTCCAGACTGACAGGA 59.8 0.06
mm3_intergenic_Gm25258|Hao1_chr2_134200629_F TCGTCGGCAGCGTCACAGAGACCATTTGACACCCT 58.9 0.06
mm3_intergenic_Gm25258|Hao1_chr2_134200629_R GTCTCGTGGGCTCGGTTCACAGTTCAGTGGAGGGC 59.8 0.06
mm4_intron_Tmod1_chr4_46055730_F TCGTCGGCAGCGTCCTGGGCACAGTTTGAAAGCC 59.9 0.06
mm4_intron_Tmod1_chr4_46055730_R GTCTCGTGGGCTCGGCCACCTGGTTGGAGAGTCAG 59.6 0.06
mm4_intron_Sorcs3_chr19_48738709_F TCGTCGGCAGCGTCTGAGAAATGGCTCGGAGGAT 58.5 0.06
mm4_intron_Sorcs3_chr19_48738709_R GTCTCGTGGGCTCGGACCTTGAAAATAGTAGACACCTCA 57.3 0.06
mm4_intron_Gm608_chr16_44210922_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Gm608_chr16_44210922_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Lrrc8b_chr5_105416448_F TCGTCGGCAGCGTCTCGGTGGTTCCTCCTCCTAG 60.0 0.06
mm4_intron_Lrrc8b_chr5_105416448_R GTCTCGTGGGCTCGGGCAACCTACGGACTTTGGGA 59.9 0.06
mm4_intergenic_Gm23152|Gm25265_chr2_166674988_F TCGTCGGCAGCGTCCCACCTCAGAGTTGTAGCCC 59.7 0.06
mm4_intergenic_Gm23152|Gm25265_chr2_166674988_R GTCTCGTGGGCTCGGCTTGTCCCAGTCTGAGGCTG 60.0 0.06
mm4_intergenic_Cdk12|Mir5119_chr11_98255101_F TCGTCGGCAGCGTCAGAAGATTCCTGCAGCCCAG 59.7 0.06
mm4_intergenic_Cdk12|Mir5119_chr11_98255101_R GTCTCGTGGGCTCGGAAAGGAAGTGGGTGGACAGG 59.5 0.06
mm4_intron_Zfp558_chr9_18466777_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Zfp558_chr9_18466777_R Primer3: not found at this Tm N.d. 0.06
mm4_intergenic_Atp1a1|Mab21l3_chr3_101694488_F TCGTCGGCAGCGTCGGCTTGGTCTCTGACACACA 59.8 0.06
mm4_intergenic_Atp1a1|Mab21l3_chr3_101694488_R GTCTCGTGGGCTCGGCAGTGTGGGCTCTTCACCAT 59.9 0.06
mm4_intron_Utrn_chr10_12535640_F Primer3: not found at this Tm N.d. 0.06
mm4_intron_Utrn_chr10_12535640_R Primer3: not found at this Tm N.d. 0.06
mm4_intron_Gm11346_chr13_24601967_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Gm11346_chr13_24601967_R Primer3: not found at this Tm N.d. 0.05
mm3_intergenic_Gm9931|Gm22966_chr1_147391084_F TCGTCGGCAGCGTCCCCTCAGAATACTGTGTGAGACA 59.4 0.05
mm3_intergenic_Gm9931|Gm22966_chr1_147391084_R GTCTCGTGGGCTCGGTGTCTACTCCTTTAGCAAGCATGT 60.0 0.05
mm4_intron_St5_chr7_109592153_F TCGTCGGCAGCGTCGGATCGAGCGTGCAAGAGTA 59.8 0.05
mm4_intron_St5_chr7_109592153_R GTCTCGTGGGCTCGGGCTGTGGAGCAGGAGAGATC 59.8 0.05
mm4_intergenic_Ighv8-5|Ighv1-50_chr12_115082754_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Ighv8-5|Ighv1-50_chr12_115082754_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm5839|Gm25440_chr18_49384436_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm5839|Gm25440_chr18_49384436_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm12467|Gm12475_chr4_52298804_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm12467|Gm12475_chr4_52298804_R Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm13216|Camk1d_chr2_5648683_F TCGTCGGCAGCGTCGGGACTCTAAACCCATGGGC 60.1 0.05
mm4_intergenic_Gm13216|Camk1d_chr2_5648683_R GTCTCGTGGGCTCGGAGCTTTCACAAAACAGGCCT 58.2 0.05
mm4_intergenic_Gm22385|Snx18_chr13_113552661_F TCGTCGGCAGCGTCCCTGCTGAGGACAGTCTAGC 59.5 0.05
mm4_intergenic_Gm22385|Snx18_chr13_113552661_R GTCTCGTGGGCTCGGACAGTTGAGAACCTTCCTCTGA 58.6 0.05
mm4_intron_Zmat4_chr8_23922806_F TCGTCGGCAGCGTCCTGGGAGCTGGTGATGGAAG 60.1 0.05
mm4_intron_Zmat4_chr8_23922806_R GTCTCGTGGGCTCGGGCAGGTTTTCCAAGGAAGCC 59.6 0.05
mm4_intergenic_Gm25266|Cradd_chr10_95074521_F Primer3: not found at this Tm N.d. 0.05
mm4_intergenic_Gm25266|Cradd_chr10_95074521_R Primer3: not found at this Tm N.d. 0.05
mm4_intron_Uck2_chr1_167258829_F Primer3: not found at this Tm N.d. 0.05
mm4_intron_Uck2_chr1_167258829_R Primer3: not found at this Tm N.d. 0.05
mm3_intron_Cpvl_chr6_53946004_F TCGTCGGCAGCGTCCCTGATAGAGGGACTGAATGTGA 59.0 0.05
mm3_intron_Cpvl_chr6_53946004_R GTCTCGTGGGCTCGGGCGAGTTCGTGAGACAGGAA 60.0 0.05
mm4_intron_Abca13_chr11_9505415_F TCGTCGGCAGCGTCCTTCCCTGAGCACCTTGGTC 60.3 0.05
mm4_intron_Abca13_chr11_9505415_R GTCTCGTGGGCTCGGTCCATAAGGCAGCCAGTGTG 60.0 0.05
mm4_exon_Ric3_chr7_109047919_F Primer3: not found at this Tm N.d. 0.04
mm4_exon_Ric3_chr7_109047919_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_4930564D02Rik|1700095B22Rik_chr3_105319161_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_4930564D02Rik|1700095B22Rik_chr3_105319161_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Cage1_chr13_38017468_F TCGTCGGCAGCGTCCGTGGCAAGGTCCTAAGGAT 59.4 0.04
mm4_intron_Cage1_chr13_38017468_R GTCTCGTGGGCTCGGAGCATGGGATTCAGTGTGGT 59.2 0.04
mm4_intergenic_4930547M16Rik|2010001E11Rik_chr10_39909133_F TCGTCGGCAGCGTCAGAAACGCCAGCAGCTAGTC 60.3 0.04
mm4_intergenic_4930547M16Rik|2010001E11Rik_chr10_39909133_R GTCTCGTGGGCTCGGCAGCTCTGCCCTTCTTTGGA 59.9 0.04
mm4_intergenic_Kif20b|Gm24006_chr19_35079926_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Kif20b|Gm24006_chr19_35079926_R Primer3: not found at this Tm N.d. 0.04
mm3_intron_Abca16_chr7_120477505_F Primer3: not found at this Tm N.d. 0.04
mm3_intron_Abca16_chr7_120477505_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Tars|Npr3_chr15_11470390_F TCGTCGGCAGCGTCGGGGAGGGAGCACACATAAC 60.1 0.04
mm4_intergenic_Tars|Npr3_chr15_11470390_R GTCTCGTGGGCTCGGTCCAGCACCTTTGAGGACAA 59.1 0.04
mm4_intergenic_Gm23249|Gm9726/mmu-mir-8099-2_chr12_93827295_F TCGTCGGCAGCGTCGCCGACTCCTTGAAAGTTGC 59.7 0.04
mm4_intergenic_Gm23249|Gm9726/mmu-mir-8099-2_chr12_93827295_R GTCTCGTGGGCTCGGTCTTTGGTGTAACCTTCCCATT 57.5 0.04
mm2_intron_4930440I19Rik_chr2_78108608_F Primer3: not found at this Tm N.d. 0.04
mm2_intron_4930440I19Rik_chr2_78108608_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Bfsp1_chr2_143846269_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Bfsp1_chr2_143846269_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm24267|Gm22438_chr1_107854631_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm24267|Gm22438_chr1_107854631_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Pard3b_chr1_62634057_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Pard3b_chr1_62634057_R Primer3: not found at this Tm N.d. 0.04
mm4_intron_Ppp1r9a_chr6_5093511_F Primer3: not found at this Tm N.d. 0.04
mm4_intron_Ppp1r9a_chr6_5093511_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_B130011K05Rik|Gm12287_chr11_63535759_F TCGTCGGCAGCGTCTCAGTGCACTTTGAGCCAGA 59.5 0.04
mm4_intergenic_B130011K05Rik|Gm12287_chr11_63535759_R GTCTCGTGGGCTCGGGGAGACAGGTGGTGGAAGGA 60.8 0.04
mm4_intergenic_Ankrd9|Rcor1_chr12_111035352_F Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Ankrd9|Rcor1_chr12_111035352_R Primer3: not found at this Tm N.d. 0.04
mm4_intergenic_Gm14520|Gm14516_chrX_16331059_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm14520|Gm14516_chrX_16331059_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm25736|Tmeff2_chr1_51033739_F TCGTCGGCAGCGTCGACAAGCCCACACTTTTCACC 59.9 0.03
mm4_intergenic_Gm25736|Tmeff2_chr1_51033739_R GTCTCGTGGGCTCGGCGATGCATACACCAGACCCA 59.8 0.03
mm2_intergenic_Gm26915|Nrip1_chr16_76262561_F Primer3: not found at this Tm N.d. 0.03
mm2_intergenic_Gm26915|Nrip1_chr16_76262561_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Pitpnc1_chr11_107294738_F Primer3: not found at this Tm N.d. 0.03
mm4_intron_Pitpnc1_chr11_107294738_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm26288|Atp10a_chr7_58334870_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm26288|Atp10a_chr7_58334870_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm22673|Gm23059_chr12_60222087_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm22673|Gm23059_chr12_60222087_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Srgap1_chr10_121910169_F Primer3: not found at this Tm N.d. 0.03
mm4_intron_Srgap1_chr10_121910169_R Primer3: not found at this Tm N.d. 0.03
mm4_intron_Col23a1_chr11_51294879_F TCGTCGGCAGCGTCAAGGGAGTTTGAGACCTGGC 59.5 0.03
mm4_intron_Col23a1_chr11_51294879_R GTCTCGTGGGCTCGGGCTCTGGGTATTGGCTTGCT 60.3 0.03
mm4_intergenic_Ctnna3|Gm22829_chr10_66114373_F TCGTCGGCAGCGTCGAGCATGTGTGTGGGAGTCA 59.9 0.03
mm4_intergenic_Ctnna3|Gm22829_chr10_66114373_R GTCTCGTGGGCTCGGTCCCACGTTCTCTTGCAACC 60.5 0.03
mm4_intergenic_Cobl|Gm22156_chr11_12579271_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Cobl|Gm22156_chr11_12579271_R Primer3: not found at this Tm N.d. 0.03
mm3_intron_Robo1_chr16_72890665_F TCGTCGGCAGCGTCAGACCTTTTCAACTGTTCAAGTGA 58.7 0.03
mm3_intron_Robo1_chr16_72890665_R GTCTCGTGGGCTCGGGGAAGCTGTTTGTGGTGTGG 59.6 0.03
mm4_intergenic_Fam173b|Tas2r119_chr15_32111432_F TCGTCGGCAGCGTCAGAGTCCATGGCAGTTGCTC 60.0 0.03
mm4_intergenic_Fam173b|Tas2r119_chr15_32111432_R GTCTCGTGGGCTCGGTGAAGTAACCCACCCACTGG 59.2 0.03
mm4_intron_Gm12248_chr11_58068830_F Primer3: not found at this Tm N.d. 0.03
mm4_intron_Gm12248_chr11_58068830_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Sult1c1|Slc5a7_chr17_54017155_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Sult1c1|Slc5a7_chr17_54017155_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Spz1|Serinc5_chr13_92608814_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Spz1|Serinc5_chr13_92608814_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Mctp1|Gm21959_chr13_76680100_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Mctp1|Gm21959_chr13_76680100_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Hsbp1|Mlycd_chr8_119377996_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Hsbp1|Mlycd_chr8_119377996_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gap|Gm9071_chr12_3014658_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gap|Gm9071_chr12_3014658_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gap|Gm3104_chr7_3070929_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gap|Gm3104_chr7_3070929_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gap|Gm3027_chr5_3021007_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gap|Gm3027_chr5_3021007_R Primer3: not found at this Tm N.d. 0.03
mm3_intergenic_Sh3rf3|AC153944.1_chr10_58833930_F Primer3: not found at this Tm N.d. 0.03
mm3_intergenic_Sh3rf3|AC153944.1_chr10_58833930_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm25497|Lrrn3_chr12_41378833_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Gm25497|Lrrn3_chr12_41378833_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Ppp3r2|Grin3a_chr4_49701614_F Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_Ppp3r2|Grin3a_chr4_49701614_R Primer3: not found at this Tm N.d. 0.03
mm4_intergenic_E030013I19Rik|Fam188a_chr2_12329309_F TCGTCGGCAGCGTCAAGCGAGCCTGCCTTCAG 60.0 0.03
mm4_intergenic_E030013I19Rik|Fam188a_chr2_12329309_R GTCTCGTGGGCTCGGTGTGTGTCTAAAACCTTTGGTGA 58.4 0.03
mm4_intergenic_Gm9897|Fzd1_chr5_4650311_F TCGTCGGCAGCGTCAAACTGTTGAACGTGGCAGC 59.8 0.03
mm4_intergenic_Gm9897|Fzd1_chr5_4650311_R GTCTCGTGGGCTCGGAGTTCTGGCCTGCCAACTG 60.2 0.03
mm4_exon_Gm4890_chr8_79306469_F TCGTCGGCAGCGTCTGCAGCAAACTGGAGCCTTA 59.8 0.03
mm4_exon_Gm4890_chr8_79306469_R GTCTCGTGGGCTCGGAGATGGGGTGGAGGTGGTAA 59.8 0.03
mm4_intergenic_Il10rb|A930006K02Rik_chr16_91436660_F TCGTCGGCAGCGTCGTAGTCCTTGTGGTGGTTCCA 59.5 0.03
mm4_intergenic_Il10rb|A930006K02Rik_chr16_91436660_R GTCTCGTGGGCTCGGGGCCATTGTTCCTGCTGTCT 60.6 0.03
mm3_intergenic_Gm5558|Rchy1_chr5_91896898_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_Gm5558|Rchy1_chr5_91896898_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Arid2_chr15_96296981_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Arid2_chr15_96296981_R Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_4631405K08Rik|Plxna2_chr1_194589424_F Primer3: not found at this Tm N.d. 0.02
mm3_intergenic_4631405K08Rik|Plxna2_chr1_194589424_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Pde4d_chr13_108802917_F TCGTCGGCAGCGTCTGCCAGCCTAGAATGTGACT 58.7 0.02
mm4_intron_Pde4d_chr13_108802917_R GTCTCGTGGGCTCGGACCAAAATGAGCTACTCTGACAGT 59.9 0.02
mm4_intron_Fars2_chr13_36521133_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Fars2_chr13_36521133_R Primer3: not found at this Tm N.d. 0.02
mm2_intergenic_Tas2r125|Tas2r129_chr6_132913484_F Primer3: not found at this Tm N.d. 0.02
mm2_intergenic_Tas2r125|Tas2r129_chr6_132913484_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Gm14206_chr11_100285194_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Gm14206_chr11_100285194_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Ccdc71l|Nampt_chr12_32805638_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Ccdc71l|Nampt_chr12_32805638_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Iqcf4|Iqcf6_chr9_106578955_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Iqcf4|Iqcf6_chr9_106578955_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Vmn2r-ps3|Vmn2r1_chr3_64080251_F Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Vmn2r-ps3|Vmn2r1_chr3_64080251_R Primer3: not found at this Tm N.d. 0.02
mm4_exon_Ttc26_chr6_38426409_F Primer3: not found at this Tm N.d. 0.02
mm4_exon_Ttc26_chr6_38426409_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Csmd1_chr8_17177883_F Primer3: not found at this Tm N.d. 0.02
mm4_intron_Csmd1_chr8_17177883_R Primer3: not found at this Tm N.d. 0.02
mm4_intron_Vps13d_chr4_145135645_F TCGTCGGCAGCGTCAAAAGTGTGGCTCTCTGGGG 59.8 0.02
mm4_intron_Vps13d_chr4_145135645_R GTCTCGTGGGCTCGGTGCAGGAAGTTTGCACTACTGA 60.1 0.02
mm3_intron_Gm26787_chr9_36773320_F Primer3: not found at this Tm N.d. 0.02
mm3_intron_Gm26787_chr9_36773320_R Primer3: not found at this Tm N.d. 0.02
mm4_intergenic_Gm8993|Gm9001_chr6_75354837_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm8993|Gm9001_chr6_75354837_R Primer3: not found at this Tm N.d. 0.01
mm4_exon_Nek1_chr8_61086499_F Primer3: not found at this Tm N.d. 0.01
mm4_exon_Nek1_chr8_61086499_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Ppp1r2-ps2|Nup210_chr6_91010615_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Ppp1r2-ps2|Nup210_chr6_91010615_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Def6|Ppard_chr17_28229538_F TCGTCGGCAGCGTCCGGCCCCACGTTTAGTAAGT 60.0 0.01
mm4_intergenic_Def6|Ppard_chr17_28229538_R GTCTCGTGGGCTCGGCCATCCGGGCAGCAGAATTA 60.1 0.01
mm4_intergenic_Trib1|Gm7083_chr15_59920592_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Trib1|Gm7083_chr15_59920592_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Rps19-ps12|Gm23083_chr16_79940730_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Rps19-ps12|Gm23083_chr16_79940730_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Nipsnap3b|Abca1_chr4_53022217_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Nipsnap3b|Abca1_chr4_53022217_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Clic5|Runx2_chr17_44358764_F TCGTCGGCAGCGTCGGAGCACAACAGCTGGAACT 60.5 0.01
mm4_intergenic_Clic5|Runx2_chr17_44358764_R GTCTCGTGGGCTCGGTAGGGAGCACCACAGCAAAG 59.9 0.01
mm4_intergenic_Clec14a|Gm17529_chr12_58269391_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Clec14a|Gm17529_chr12_58269391_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm8812|Map2_chr1_66138725_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Gm8812|Map2_chr1_66138725_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Pdzd2|Gm24302_chr15_12687446_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Pdzd2|Gm24302_chr15_12687446_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Pdgfc|Gm22531_chr3_81496345_F TCGTCGGCAGCGTCTGCTGTGATGGAACCAGCAA 60.1 0.01
mm4_intergenic_Pdgfc|Gm22531_chr3_81496345_R GTCTCGTGGGCTCGGTCCAGAGTCATCCTTTTGGCC 59.9 0.01
mm4_intron_Plekhm3_chr1_64920806_F Primer3: not found at this Tm N.d. 0.01
mm4_intron_Plekhm3_chr1_64920806_R Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Alox12|Alox12e_chr11_70289864_F Primer3: not found at this Tm N.d. 0.01
mm4_intergenic_Alox12|Alox12e_chr11_70289864_R Primer3: not found at this Tm N.d. 0.01
mm4_intron_Prlr_chr15_10306078_F TCGTCGGCAGCGTCACTGTGGCAGGTTCTGGATC 59.6 0.01
mm4_intron_Prlr_chr15_10306078_R GTCTCGTGGGCTCGGGTCCAACAAGAAATTCACCCCA 59.0 0.01
mm4_intron_Atp2c1_chr9_105436451_F TCGTCGGCAGCGTCAGCAGGCAAGCAGTACTTCT 59.3 0.01
mm4_intron_Atp2c1_chr9_105436451_R GTCTCGTGGGCTCGGGGTGGGTTAAGGGGAGTTCC 59.6 0.01
mm4_intron_Lrrc20_chr10_61484047_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Lrrc20_chr10_61484047_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Vgll1|Gm14718_chrX_57109689_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Vgll1|Gm14718_chrX_57109689_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Zcchc6|Gas1_chr13_59982885_F TCGTCGGCAGCGTCAGGAGGTGACCAGGGCTAAA 60.1 0.00
mm4_intergenic_Zcchc6|Gas1_chr13_59982885_R GTCTCGTGGGCTCGGGGTCTCCTCTCCCAACTTCC 59.0 0.00
mm4_intron_Pdzd2_chr15_12433998_F TCGTCGGCAGCGTCACACCCCAGAAACCAGGTTG 60.1 0.00
mm4_intron_Pdzd2_chr15_12433998_R GTCTCGTGGGCTCGGAGTAAACATCTGGGCGGTCG 60.1 0.00
mm4_intron_Gpc6_chr14_117753829_F Primer3: not found at this Tm N.d. 0.00
mm4_intron_Gpc6_chr14_117753829_R Primer3: not found at this Tm N.d. 0.00
mm4_intron_Gm7942_chr5_95108284_F TCGTCGGCAGCGTCGAGTCTGCCATGATGCCACT 60.1 0.00
mm4_intron_Gm7942_chr5_95108284_R GTCTCGTGGGCTCGGGCTTCTGAGTTACTGCTCATGC 59.6 0.00
mm4_intron_AC140365.1_chr5_JH584299_random_717643_F TCGTCGGCAGCGTCGAGTCTGCCATGATGCCACT 60.1 0.00
mm4_intron_AC140365.1_chr5_JH584299_random_717643_R GTCTCGTGGGCTCGGGCTTCTGAGTTACTGCTCATGC 59.6 0.00
mm4_intergenic_Mmrn1|A730020E08Rik_chr6_61078083_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Mmrn1|A730020E08Rik_chr6_61078083_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Mki67|Gm9341_chr7_135860381_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Mki67|Gm9341_chr7_135860381_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Hnf4g|Rps24-ps2_chr3_3746741_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Hnf4g|Rps24-ps2_chr3_3746741_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm8260|Gm6760_chrX_64090212_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm8260|Gm6760_chrX_64090212_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm6205|Gm3183_chr5_94778044_F TCGTCGGCAGCGTCGAGTCTGCCATGATGCCACT 60.1 0.00
mm4_intergenic_Gm6205|Gm3183_chr5_94778044_R GTCTCGTGGGCTCGGGCTTCTGAGTTACTGCTCATGC 59.6 0.00
mm4_intergenic_Gm5742|Gm22223_chr8_100093560_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm5742|Gm22223_chr8_100093560_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm3259|D5Ertd577e_chr5_95425763_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm3259|D5Ertd577e_chr5_95425763_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm23752|Gm24815_chr12_5946078_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Gm23752|Gm24815_chr12_5946078_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_GM6367|AC123873.1_chr5_JH584299_random_90346_F TCGTCGGCAGCGTCGAGTCTGCCATGATGCCACT 60.1 0.00
mm4_intergenic_GM6367|AC123873.1_chr5_JH584299_random_90346_R GTCTCGTGGGCTCGGGCTTCTGAGTTACTGCTCATGC 59.6 0.00
mm4_intergenic_Ap3s1-ps1|Gm14565_chrX_38693464_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_Ap3s1-ps1|Gm14565_chrX_38693464_R Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_AC126035.1|Gm16367_chr5_JH584299_random_396846_F TCGTCGGCAGCGTCGAGTCTGCCATGATGCCACT 60.1 0.00
mm4_intergenic_AC126035.1|Gm16367_chr5_JH584299_random_396846_R GTCTCGTGGGCTCGGGCTTCTGAGTTACTGCTCATGC 59.6 0.00
mm4_intergenic_4930595M18Rik|Gm8822_chrX_81482320_F Primer3: not found at this Tm N.d. 0.00
mm4_intergenic_4930595M18Rik|Gm8822_chrX_81482320_R Primer3: not found at this Tm N.d. 0.00
mm4_exon_Icam5/Gm26592_chr9_21037130_F TCGTCGGCAGCGTCGATTCACGGACGGTCACTGT 60.0 0.00
mm4_exon_Icam5/Gm26592_chr9_21037130_R GTCTCGTGGGCTCGGTCACGGCACTTTTCTAGCGG 60.6 0.00
mm4_exon_Gm14661_chrX_60807304_F Primer3: not found at this Tm N.d. 0.00
mm4_exon_Gm14661_chrX_60807304_R Primer3: not found at this Tm N.d. 0.00

Off-target amplicon sequences with primers

These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.

ontarget_mm0_exon_5730457N03Rik/Evx1_chr6_52313594 CGTCACCAGCGGTACTGTAATGACGATTGCAGCAGGAGGATGACAGCTTAGAAAGAAGAGGGCAATGGGGCTTCCTCCCA
GAGGCGGTGCGGCACAGAGGAGCGCTCGCATCACAAGGTGACCC
mm2_intergenic_Gm14825|4932442L08Rik_chrX_94349572 GTGTGTCCAGTCACTTACACTTTCCTTTCCTTTAGACTTCATTTTCAGTAGCCAAAGAAAAACAAATAACGGATTTCCCC
TTCTTTCTAAACTGTCAAC
AGTTTACATTCAAAGAAAGTGTCTGTGAGACCAGTGAGAGA
mm2_intergenic_Slc7a11|Gm24503_chr3_50826456 TCCTCCAAGCTCCCAGAGAATAAATTTGTTCCTTTTCTGTTTTGTTTTTCTTCAAGATATGACATCTTAGAAAGAAGGGG
CTGGGAGTGGTGGGGGGAGAGCACTTTCTGCTTCTGTGGATAGAAACATGCAGTGTGC
mm3_intergenic_Gm24200|1190002N15Rik_chr9_94382346 ACTGTGTTCTGATTTCTGCCTCAAGAGATAGACTATAGGAGTTGTGCTTTACCCCCTTCTTTTCAAGCTTTCATCAAAAT
AAAGATAAATTTCAGATGGGGTAGAGGCAGCGCAGTCCATCTGGTGCTAG
mm4_intron_Prkd1_chr12_50413040 GGAAGCCCAGGTATGCACATTATAAAGAAAGTCAGTCTAGATGTTGACAACATAGAAAGAAAAGGGAAGTGAAAGTTTGG
GAAGGGGAGGGTCGTGAGTGAATG
mm4_intergenic_Fam98a|Gm24126_chr17_75618210 TGCTGGAAAATGTACCCTAAGTGACATAATATTAGAATAAGTTAATACTGCCTTTTCTTTCTAAGCTTTTAACCTGCTCT
CAATCAAGAAGTTCTTAACCCAGGCCTTTTGGATGT
mm3_intron_Cntnap2_chr6_46916683 ATGTAAGCAGTGTAGGGCCCCTGGTCCCACCCCCTCTTCTCTCTAAGCTTTTATCTTTGCCGCCCACTTCTCACTTGCTT
CCATTCCCTGCA
mm4_exon_BC006965_chr11_112664435 CACAGTCCCTATCCGCTGTCAACTAGAAGATACCACTGATGGTGACTTAGAAAGAAGGGGGAAGTGGCTTTGTATTTGTT
TAATTATTTTTAGCCAATAGGACTCACAAGGC
mm3_intron_Vwa8_chr14_79066392 TTGTGAAGAGCAGCCCTTGGTGCAGTGGGCTAGCACCTGCCAGGGCAAGAGATTGCTATCTCTGTGCTCACAATGGCAGC
TTAGAGAGAAGAGG
GTTGAACTTGCACTTGAGATTGGGCTAGACACAGCTGC
mm3_intergenic_2700046A07Rik|Apcdd1_chr18_62871898 ACCTCACCCACAAACCAGATGATGGCAGGTTAGAAAGAAAAGGGCTGAGTTTTATGAGTCGTTCCAAAAATCTTGTAGCT
ACCAGCCTCCTAACTTCCCC
mm4_intergenic_Gm11528|Phb_chr11_95666480 GACCTGAATGACCGACTCCCTTCCTCTTCTTTCTAAGCCGTTTTTAAGGTTATGGAGTGGCTTGGAAGATCAACATCTTA
CGTCCCTGAGGGCTGTCCTTAACTTCCCTAGCAGTCTCTCAGTGC
mm3_intergenic_Fmn2|Grem2_chr1_174825141 AGCTGTCCCTTGTTCAACCACAAATGCATGACAAATTTTAAAATAGATGACAGTGTAAAAAGAAGGGGCCCAAAGCTGTT
TCCTTATAATTAAGGCAGTTAAGTAGGTGTAAATGTGG
mm3_intergenic_9530036O11Rik|Rnf32_chr5_29138728 GCATGATGGGTCCCTAGCTCATATCTGTTAATTGCTTTTTAAAAAAAAAAGTAACAGGTAATTGAGACAACTCCTCTTCT
TTCCATCCTGTCATC
CCAGAAGATAGCCTTCTCAAGCAGGCAATACA
mm4_intergenic_Stim2|Gm24235_chr5_54437492 CCCACCCCAATCATACATTCCTGACAACAACAGTCCTCTTCTTTTTATCCTGTCATGAAAGACTTACTCCAGCCAAATGA
ACCAACTGCTAAAGTGCACG
mm4_intergenic_Mtpn|Gm23273_chr6_35748942 GAGCCCCAAATCTTCCAGGTAAGTCTCCAAATCCATCTTTTCTCTCTCCTCTTCTTTCCAAGCCTTCTTCAGAACTTGAC
TGGTGCATACAAACTGGAACAACATTTCAGGTGCTAGTGAAGCTTTCTGTGCTAGGCAGA
mm4_intergenic_Gm9578|Gm22891_chr14_82071353 TCTTTGGCCATCTCTTGCCTAATGTATAGCGTGGCATAAAAATGAGACCCTGTTTCCACAAAAATGAGGTCCACAGTCTG
CCACTTCTTTCTGAGGTGTCAGACAACCAAGTAAGTGGTGGGAGGAGGG
mm4_intergenic_Robo3|Msantd2_chr9_37459844 GAACCGGCCCCTAAGTTCTTTACCCATTTCTCTCCAAGCTGTCTTCTCACCCTAGCATTAAAGGTGGAACGTACACGTAG
CCAGGCTTCA
mm4_intron_Ntrk3_chr7_78369908 ACATTGTCCTTCTCAGGTAGTCAATAAATATCACTTGATGATAGATAACGAATAAGGCATTGATTTTTCCATTCCCTCTT
CTTTCTATGTTCTCTTC
TCCCTCCCTCCTTTCTCGGGGTACAGGT
mm4_intergenic_Gm3756|Arhgap32_chr9_32111940 TGCCTTTCTCGGAACCTGAATGTGGATCTGTATGTGCTATTCTACCCCTTTGCCTCTTTTTTCTCTGCTTTCATCATATT
TCTGTTCACTTGTTCCCACCGTGATCATGAAGCAGCTGC
mm3_intergenic_Gm15746|B630019A10Rik_chr16_23214292 TTGTGTGGCTCATGACAGCTAAGAGAGAGATGAGGTATGGGTTGTGTGAAGGGGTTGTATTCATGACAGCTAAGAAAGAT
GAGG
TATGCCAGCCGGAAGTTCAGATGGCCAAGACCCA
mm4_intergenic_Kcnc2|Atxn7l3b/Gm26596_chr10_112875730 TGTGGACTTTTCTGAGTTCTGGTTTGTAAAGTTTCCTATTTTACTTTGTGAATAACTCTAGAATTTTATCTGTCATCCAC
TTCTTCCTAAGCTATTATG
CCATTCCTGAGTTTATTACCCAGAGATTCTAGCATTCTCA
mm4_intergenic_Nnmt|Zbtb16_chr9_48622227 TCCTCCTTTTCCTCTCTGCCTCTCTGTTCCCCTTCTTTCTTAGTCCTCATCTTCCTGGACAGTTATACATGATGCTCCTA
GTAAATCCTTGGAGGTGAGCTATGTGAACAACCCAATCCTTTCCCTGTTCC
mm4_intergenic_Trim29|Pvrl1_chr9_43602355 CTGATGAGGGCCAAAGGGAGACTCTTATAGACTGGCAAATCTGTTTGGTTTTTATTTTTTATTTTCAAGGACACCTTAGA
AAGAAACGG
CCCCACAGACGCCTTGCCTCCTGATTGGTTGGTC
mm4_intron_4933434I20Rik_chr8_83365788 GGTGCGCTGTGCTTTAAACAGAAGTAACCCCTCTTTCTGCCCCTTCTTTGTTTGCTTTCATCCTGAGTTGCTCTGCCTTA
GTCTGTAGCCAAGC
mm4_intron_Cadm2_chr16_66799343 TGGCTGTTGTCATATACCACATTATTGAAGCCATAGTTTTAGAAAACTTTATGAAATCTTAGAAAGAACTGGTAGAATCT
GTTTGGGGTCTGCCTC
mm4_intron_4922502D21Rik_chr6_129330169 GGCAGGCCATATGCTTAGACTACATGACAGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATTTCAAGGTTTCTGAATTAAGCAGT
mm4_intron_Ccdc126_chr6_49332401 TGCCTTCTCTCTCTTCTCCTTCCCTCTCTTTCTTAGCTGTCATTTAACTCTTCATCTGCCAGAAACACCTAGCTCGCCGT
GTTCTCAGTTCTCCA
mm4_intron_Wbp11_chr6_136824443 GGACCATCATGCGCTGTTTTTTGTTCTTTGGAAAACAAGAGCGAGGAAGACTACTAAGAAAGAAGCGGGCACTCCGGACA
TTTTACCTTCCTTTGCCTCAAGAGT
mm4_intron_Gm527_chr12_64918376 AATGCAGTGTGATCCCTGGGTATGACAGCTCAGAAAAAGGGGGTCCTGTTGGTGGAGAAACTGAGGTTGGGGAGTTTCCC
AGGCTCAGTGCTACTGAAGGCGCTGGGATGGAGGCAGGTAAGAGGCAGCCCAGTA
mm4_intron_Txnrd3_chr6_89659539 GACAGAGGCAGGCCATGACCCTTGGCTGCCGATTTTTTCTGGGCTGTCATCTAGTTATGACCAGATTCCCCAGGCAGGCA
GGCCCTTATGTCAT
mm4_intergenic_Ube2u|Gm12698_chr4_100524998 GGACTGCAGATTCCCGAGTCTGCACTGGCTTTTTATAGCCCTGTTCTTTCTTAGCTGTTACCGTCTACGTTCTCCTTGAT
GTGTACAGTACCCTGCACCCATGAGGATTT
mm4_intron_Fam114a2_chr11_57517436 GCTGCCTAGTGTTCTCCCTCCTCTCCTCTTCTTTTTCTGCTGCCATCTTGTCTCTCCCTCCCAATAAAACCTCTTCCACG
TGAAAAAAAAAAAAAAAAAAGGTGTTGCCTAGACTCTATGGG
mm4_intergenic_Gm12689|Gm12685_chr4_99310790 TCAGTGGCTCTTGTTGGCTTTTGAGAGACTTGTCCCCTTCTCTCTCAACTGTCATATTCACATTGATAGGGTCCCAGACA
TGAAACCCTGTGCAAATGCCGCTATTGTAGATCAAGTACTTCATCCAAGTGGAGTTGCCC
mm3_intergenic_Gm16190|Pnpla1_chr17_28867898 GGGGCCAGGGTAGAGTTCTACCTTGGAACACAATCTCCGATGACAGCAGAGAGAGAAGGGGGTGGGAGTGGGGTCGGGGG
ACTGATGGCCCTGAGGTA
mm4_intron_Cnot2_chr10_116496406 AGAGAAAGTGGGGATGCTGCAGAGCGCTTACTGGAATCACAGGAACGGATTCCTCGCAACAGTGGATTCAGTAGAGTGAA
AGAAGACAGGTTAGAAAAATGAGGATGACTCATTTGAGACGGTTTGCTTCCA
mm4_intron_Clec4a2_chr6_123123051 TGAACTTTGCCTTCCCCACACTGGTGGCAGCTGAGAAAAAAGTGGGAATCCACACAATGGTGAGGGCTAATGGTCCAC
mm4_intron_Tgm4_chr9_123046649 AGACTGTCTTCGTGTGGCTGCACCAGGCACACTTGATAGACCACTTCTTTCTTAGCGGCTATCAAGCAAAGGCTGTGGAG
GAAAGTGGGTTCACCTCAGCTGAA
mm4_intron_Trim38_chr13_23784783 GGGGAGTAGTTTGACAAGGACACGAATTCCTTTAAGTTGGTTTCTTGATGTCATCCTCAAGACCCCTCTTCTTTCCAAGC
TCTGATA
ACTTCAATTAGTATCCTGGCCTTTTCTTTGTACCT
mm4_intergenic_Gm23752|Gm24815_chr12_7286213 GCTCATGGTCTACAATTGTGCCCTATTATTTCTCTCCTTCACCTCCAAAATCATCAATGTACATAATCATATACTAAAAA
ATGGGATAAGAGCATAGGAAGAAGGGGCCATCACTACCAAGCAGAATTAACA
mm4_intergenic_Gm5839|Gm25440_chr18_48995152 TGTGTGCCTATAGCCGAGAGGGAAACGTTATAAAATGAACCTACTTTTCCTCTTATTTCCTATTTTAACCTCTTCTTTCT
GTGATGTCCTC
TATAGGATTGTCTTACCTTGATCATCCAGTATCTTCGA
mm4_intergenic_A930031H19Rik|Gm25261_chr4_131144431 CTCTCCTCCTCCCGCTAAGATCTCTCCCTCCCCCTAAGATCCCCCCTTCTTTCTAAGATCTCTCCCTCCCCTCTATGATA
TCTCCTTCCCCACTAAGATCTCCCCT
mm4_intron_Gabrb1_chr5_71862817 TGAGTGAAGAGAGCTTGGGAAACCAGATCCCAGCTTGGAAAAAAGAGGTTATTATCTTGTGTGCCACATCATAGAGAGGG
mm4_intron_Fzr1_chr10_81376993 CCATGAGAGCTAGAGCCACCAACTCCCTTTCTTTCTAAGCCCTGATCCCGAGAGCCAGAGGTGGTGTCTGTTCTGGGTGA
ATCTTCACTGGGGAATCACCCTCATTCAAACAGCAGGAAGGAGCTAGGACTGGG
mm4_intergenic_Gm21614|Gm23249_chr12_93328482 AAGGGGATCATCTCGTTGCATTTGAAGACAGTAAAAGCCTTTCCTCTTCTTTGTAAGCATTCATTTCATTATTCACAGGA
GAAAAATTTGGGCTTTGGTTTATCACT
mm4_intron_Degs1_chr1_182277750 GGGACTGTGTAATAAATGCCAGGTAGTTACTGAATAAACAGAGTTCCTCATAGGCAGACATCTTAGAAAGAACAGGAAAG
GCAGGGCTCTCCAGCACTAGCGCTGTCTACAGTCTATCGACGTAACCCAGGGGA
mm4_intron_Il24_chr1_130882788 CAGGGTGAGGACAAAGAGGCTACTGAGTAGTAGGTAAAGGGCCAGAGAAGAACATGGTACCTAGAACACAAGAACCTTGG
ATGCCAGCTAGGAAAGATGTGG
GGAACTCACTGAGCTGACATGAGCC
mm4_exon_Rragd_chr4_33013030 AAGTTCTTGGCGCTCGTTTGCTTCGTCAGAGAGGAAAGCTTTGAAAGAAAAGGTAATTTTTGGTAGGGTTTAAAAGAATT
GCATCTGTCGCCTGTTGA
mm4_intron_Pde4b_chr4_102502920 ACCAAGACTGAGCACCAAGGCACCATGAGAGGTTAGAGAGAAGAGGGGCAATTTTCGATTAGGAATATGTGTGTCCTTTT
GAAGAAGATTTGTAATCTTCAAAGGTGCATGATGTTTAGTGTGCAGAGAGCTTCCC
mm3_intron_Dnm3_chr1_162369992 CCTGCTCCTCACTTCCCATGCCCCTCCTTCCTTAGCTGTCATCTCTTCACAGCGCTGCTCTCTACTGTGGCTTCTTCTCC
TCCACTCCTTCCCCTCAAACCAGAGCATTTGCAGATGTGAAGGAGGCCTATGTCCTCGT
mm4_intron_Chuk_chr19_44093008 GTATGTTGGGTGGTGGGGAGGGATTAAAGACAGCATAGAAATAAGAGGCTAACTAAGCGTTGCACCGCTTACACACCAAG
GA
mm4_intergenic_Sh3tc1|Ablim2_chr5_35757032 CTGTGCCTGTTCATGCAGTGGCAGATCCTGTATGTTCTCATTCTGGGCCCTGCGCATCCGTGCTCCCTCATCTCTCTAGG
CTGTCTTC
TTGTAGTCTCTTGTGCCCACCTGTTGTCACCACCGATACGAGGCAGGATC
mm4_intergenic_Ccnd1|Tpcn2_chr7_145109620 AGCTGGTGGTAAGGAAAGCCCCATGGAGGTATGAGCATGTGAGGGGAGTTGCCGGAGGTGGGGAGGGGGTGTGTGGTGTG
ATGTGAGGAGATGACGGCCAAGGAAGAAGGGGGCAGGGGAGGCCAGGTAGAAGGTA
mm4_exon_Cyp2b19_chr7_26759325 TCCAATGTGACCCAACCACCCATGTTTCCCCTACTTTCTTAGGTGTGATCTTTTCCAGTGGGGAACGTTGGAAAACCCTT
CGGCGATTCTCTCTGGCCACCATGAGA
mm4_intergenic_Idh2|Sema4b_chr7_80182402 CCTGTCAAGGGCCAATACTACTTAACCCTCCCCATCTTTCTATGCTGTGCTCAACTCCTAGACATTGCTGAGCTCTGTCA
CACCCTTCTCC
mm4_intergenic_Gm11077|Pde3a_chr6_141048792 TCTGTGACCTGTCGACTAGATAAAAATCATATACGACATGAAATAGAAGCCAAAAATACAGTTTAGAGAAACAGACAGCA
CTAACAGGAGGATGAGGGATGAGAAAGAAGAGGGTAGGGAGCCTGGAGGGGAACATG
mm4_intergenic_Rngtt|Gm12398_chr4_33594839 AAAGCTCTTAGAGGCCGCTGCCCAGAGAGCAGGCCCATGGTTTTCTTCTCTCCATACTTTGTTGGATGGCATCTCAGAAA
GGAGGGG
CCAAATGAGAGAGCAGGGACACACAGA
mm4_intron_Map2k6_chr11_110485237 GGCATGCTTGTTCTGAGTCACTGTCTTTGCCTCTGTTTTCTGAGTTGTCATCTCCCTTGACTGTTAGTAACTAGTTCAAA
TTCAATTCTAAGCTAATAATTAGCAGTTTGTTTAACCTTGACAAGTCACTTGGT
mm3_intergenic_Gm26674/Sash1|Gm9930_chr10_9355263 CTGAGAGCCTGCATCAAGGATCTATGCCAGACCTCTTCCTTCTGAGCTGTTATCTCTGTCCTGAAGTGCAGGTATGTTTG
CAAGCAGGACTGTGTGCTCT
mm4_intergenic_Abca5|Map2k6_chr11_110347594 GCAACTACAAGCCGCACAATTACAAAATGGAAAAAGAATATTCTGGAAGGACATTTTGTCCTCATTATTTCAATTTTGTT
CTGTGTTTTAGACCCTCTTCTTTCTCAGCTCTCTCCCCAAACTCAAAGAGATCTTGCCT
mm4_intergenic_Wnt4|Cdc42_chr4_137301664 TGACAGGGGAGGAGAGAAGGGACCCTTTAGGGCCAGGACCCCAAGGCTGGCATGGTGCCTGCTTAGAGAGAAGGGGACTA
AAGGCCCAGCCCTTGTCAGCATCCCGGCCGGCACTTCGGAGGCAATTAGC
mm4_intergenic_Gm23558|Galc_chr12_97455536 TGTGGGACAGATGGGGAAGAAGTGTAAGAGGAGGGATTTTACTGACTTTAGCCTAAATGATGATAGCTAAGAGATAAGAG
G
CAATAGCAAGGAGACAAGGAGAAAATTTGATGGGCACAGAGTGTG
mm4_intergenic_App|Cyyr1_chr16_85198316 GCCATTCCTCCCACAACCTTCTGTGGAAGCAGAAACCACACCTTTTGTTCCACTTCTTTCTCAGCTCTCTGCTGTCTCCC
TCAGAAGCGAGGCACTCCCTCAATAA
mm4_intron_Egfem1_chr3_29211271 TGGCCTTTTCTAGGTTTAGATCAAAAAGAGTACTTTAGCCTAAACTCTTGATTACATCTTAATAAGAAGGGGAAAAAAAA
TCTTCATTTAAATGAGATTAACCTGTGGGTTCTCATATGATCCT
mm4_exon_Tbc1d9b_chr11_50168203 TGTGGAAGCACTGCTACAGGAGCAGCAGGAAGGAAGTGGAAATGAGGACACCCCAGAAAGAAGAGGTACAAGCCATTCCA
ATTGGTGATCCCAGGGGCGGTGGGACCTTGTGCCCACCCTTGCTTGTTA
mm4_intron_Fgfr2_chr7_130226625 GTCCGTCAGTCTGGGAGATGGGGGGCGGGGGGAGGTCTAAGTGACCCCCCCCCCTTTCTAAGCTGCCATACCTAATGAAA
TCTTTGCTTATTTGTTAATTTTACTTATTTTAGAGTCTACCTTGCAATGCCACTGTCT
mm4_intron_Nr3c2_chr8_77241233 CTCCAGTGAGGGTCCAGTGACGGAATATTCTCCTCCTCTTTCTGTGCTGTCCTCCCAGATCCCTGAACCTTTCAAAGCTT
CATGTTCTCACGGATGCTTGGTCCTT
mm4_intergenic_Vmn1r202|Gm11300/Vmn1r203_chr13_22502460 AATTGGACATGAGCACCGTGCCGATGCTTTCTAAGCTGTCACAGAAGCTAGCTCTTTATATCTTCCATCTCTAGATGTTT
TTCCATGAAAAATCCAAACAAAGGACGAATTCATTCAGTTTCCAAGCCATGA
mm4_intergenic_Gm11681|4933434M16Rik_chr11_112800781 TGCCAATAACACACCCTCCCCCCCCATCTCCACTTTTATCACACAAATTATCTCTAGACTTTTGCCAGATGTCCCTGGTG
ACAGATGAGAAAGAGGAGG
CTACGCTAGCTGAGAATCACATGA
mm4_intergenic_Hs1bp3|Rhob_chr12_8389466 TTAGCCCAATCCCCTCATGCCTTCCCCCTTCTTAATAAGCTGTCTTTATTCCTCTTTCTAATCATGTGTCTAATCTGGTG
CTTTGACCTGGG
mm4_exon_Egflam_chr15_7316474 CGCAGGGACTTATCTGAACCAACCTCAGAGTAAAACACCTTAGAAAGAAGCAGAAGCCATGGTGAGAATAAAGGCAACAT
TTCCCTAACATCAAAAGTTCAAAAACATTCAGAAATGGTGTGGCTATGGTGGT
mm4_intron_Sgms1_chr19_32136134 AGCATAACCACTGAGGACTGAGAGGACAGCTCAGGGAGAAGAGGAGCAGGTGACAGGCCCGGGGCTCGAACCTCAGCACT
GCCAAAGCAAGAAACAAAGCTTCGCAAAATGACACAGCCAGAGGGAGA
mm4_intergenic_Pced1b|Rpap3_chr15_97591440 CCAGCGTTAAGGAGAGGCAACGTATCTGGGATGTGTCTTGATTCAGTCTTGATCACAATGTTGCCTGTACTTTCTAACCT
GTCTTC
CAAGTTAATGGCACAAGAAGGCTCAGAG
mm3_intron_Rftn1_chr17_50117690 GACCTGCCTGACACTCAACACTTGTGGTAGAGACCCAAGGTTCCCTAGTCCTTCCTCTTCTTCCTCAGCTGTCCTCGGCT
GTTCCTTCCAGCCTGTCCCCTCCCTCCCTATC
mm4_intergenic_Gm9931|Gm22966_chr1_147771121 GAGCAAAGCACAGAGGACCAGCTTAGTTCAGTCAGCCCTATGGTGCTAAGTTATTCACACCTCATTGTTTACATGACAGC
AGAGAAAGAGGAGG
GAACAAGACCCCAATCAGACATCAGT
mm4_intron_Lmna_chr3_88487775 TGAGCAGCATGAGAGAGCAGAGTTGCAGAGAGGAGAGCTTGGAAAGTAGCGGACACTGCACACACAGGCAGCACACCTAG
GTA
mm4_intron_Hs6st3_chr14_119437068 TCTGCTTGTCTGGAGATATGCTAAAATTTGTAGCATGCCAACTTAGAAATAAGTGGTTCAAGTTAAATATCTTCCCTTCC
ATTTAGGACACTGAATCCTTTCTTTAAAGCCCTTACCTTTGCATGA
mm4_intergenic_Zfp217|Gm17619_chr2_170171745 GCTAGCTAGCCTGACGTGGGCGGTGAAAGCTTAGAAACTAGAGGCTGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCTGAATCTAATTCTCAAACCATGTAAGATGGTGTCCATTGAC
mm3_intron_Clstn2_chr9_97484615 GCTCTGTTTTGCCCTTCCCTTTCTCTTGTGAAGTGCTGACATCTCAGAAAGAAGGAGCAAAAGCAGCTCTCTCCTTGTTG
TAGGTATTCGGTTCCAGTGGTGCAAAAG
mm4_intergenic_Gm14453|Rbm38/Gm14453_chr2_173028054 TAATGGATGGCCTTGGCCTTGGAGGAGGCCATCATAGAGGACAACTTTGAAAGTAGCGGTGGAGTTTAGGCAGGTTCAGG
TGGG
mm4_intron_Tceal3_chrX_136641913 CGTCCTGTGCACATTTTCCCCTTCTTTAATCTTTGAAGGATAAAATTGTCCTATTCACGTCAAGTGATTACAACCTACAA
AGAAGGGG
GGGGGGCAAATAGAACCAAATGCCTTGTCAAGACCTGAGG
mm4_intergenic_Gm13529|9430024E24Rik_chr2_33679589 CTGTGCCCCAGAGAGGACTGTGCCTCTTCTTTATAAGCTGACAAATCTCAGGCAGACTAGGAGGGGCCATGGGGAAAGCT
GTGGCTCCTGCCTCTGCTGTCATGAA
mm4_intron_Smg6_chr11_74973363 GCGCTCACGAGAACCTTTTGTCTGCCTCCCTGCCTGAAGACAGCCAAGACAGAAGGGGTTTCGGCTCCCCTACTATTTGA
GTAAATGGGCATGAGAGTTCCCAGAC
mm4_intron_Dmd_chrX_85070940 TGTTCTGTTCATTGATGCCATCCCCCTTCTTACTAAGCTGGAAGCTTTTTCTTTCCTTTTGTTGTAGAGAATCTGACTGA
TAGATTGTGAGTAAAGCTTTCATTCTGTGAAAAATGATCTTGGGGCCTGT
mm4_intergenic_Fat4|Gm9845_chr3_39270164 TGTCAGAGGAAAACAGTAGCAGAGTAATATGGAGATGACAACTGAGATAAAAGGGGGCTAAAATACATTTTAAACTGTAT
TTTAAGAGAGCTACAAATGATAGTAGGCTGGAAAACAAAAGGAAACC
mm4_intergenic_Minpp1|Papss2_chr19_32553769 CAGCAGCTTCAAGGTCTCCAGCCTCTCCTTTCCACGCTGTCCTCGGTGTGGCAGTCATAACTCATGGCTACACAATAGTC
TCTACCATTATGTCCTCCCAGGGCAGCATGAGAGAGAG
mm4_intergenic_2810032G03Rik|Gm24758_chr12_5572747 ACCTGGGACCATGCGATTTTCCTTTGCTTTCTCAGCTGTCATAGACTTGAGGAGTATTTCTTAGTATGTGCATAGGAGAC
ATCTTCCTTAGGCAGATATCTCCTGAGCCTGAGGGG
mm4_intergenic_Gm23185|Gm23848_chr15_49464083 GAATTCCTGTTGGCTGTGGCAGATGACAGTTTAGCAAGGAATGGGGAAACTGAATTTTATGAAAAACAAGATACTTGAGT
CATTGTGTTTCTGAAAAATACCGTGGATTACATTTGTGTCTCCTCATGGCCTTC
mm4_intergenic_Tec|Gm9870/Slain2_chr5_72874143 GGACCCCTGAGGAGAAGAGAGACCCACACAGCTCCTTAATTCTCTCCTGTTCTTTCTAACCTGTAATGGTGGACCAAGAC
AAAGATTGTAATATTGAGTTGCTGGAAATGGATCCA
mm4_intergenic_Gm11675|Gm11676_chr11_111305027 TCTCCTGAAACCATTTCTTCTCTTTAGAGGAGCTCTTAGAAAGAAGTGGAAAGTAGTCATACCACTCAATATAAATGTAT
CTCGTAATAGATGTTAATGGATAGCAAATATGAAAGAGGGGGGGAAAGATGGTCAGAAGG
mm4_intron_Cdhr2_chr13_54711623 CTGTGTGGACAGGAAGTGGCCCTGGAGGTCAGCTTGGAAAGTAGGGGGGCAGAGATCTTGCTGAAAAGGGATGGTAGGGC
AGAGT
mm4_intergenic_Gm12122|Slit3_chr11_35497097 TGACAGTGTCAGCTACGACAATCAAATTAGGGATGAAAGCCTCGGATGACTGCCAAGAAAGAGGCGGAGAAGAAGGGGGT
GGGGAACTCAGGGGAGGGAAGATTGC
mm3_intergenic_Gm23681|Peli1_chr11_21038506 CCTCACCTGGCACTATAGGCTGAATCTCCCCTCACCATCTGATGTCAGCTTAGAAAGCAAAGGAGACTTGAGACTCAAAT
GGAAAAGAGAAACATGCCTGTGAGCCATAGAGACGATAATCCTGTCAGTCTGGAGTGGT
mm3_intergenic_Gm25258|Hao1_chr2_134200629 ACAGAGACCATTTGACACCCTATGTCCACAGGTACACTACTTCTTTCTTAGCTGTAATTAAAGATTCCTGCCTGAAGTTT
CAGCAATATGGTGCCCTCCACTGAACTGTGAA
mm4_intron_Tmod1_chr4_46055730 CTGGGCACAGTTTGAAAGCCACCTATTCGATCCGTTTCTGCTGTTGATGACAGCTCAGTAAACAGAGGCCTTAAGAATTT
AATAATGGTCACCGTGGCAATTAACATCAAAACTGACTCTCCAACCAGGTGG
mm4_intron_Sorcs3_chr19_48738709 TGAGAAATGGCTCGGAGGATTCATTTATTTTGTTCCTGTGGTTAGGAGAACTTCCTTGGGAAACCAAAGGCCAGGCCACC
TCTTTCCAGGCAGTCATC
TATATTTATGTATGAGGTGTCTACTATTTTCAAGGT
mm4_intron_Lrrc8b_chr5_105416448 TCGGTGGTTCCTCCTCCTAGGTTGCAGGTGCTGACAGGTCAGAAGGAAGAGGCTCGGTAATCCGTGTCCTCAACTGACTT
CCCAAAGTCCGTAGGTTGC
mm4_intergenic_Gm23152|Gm25265_chr2_166674988 CCACCTCAGAGTTGTAGCCCTGGGCTCAGCTCACAAAGCTGTGACCTGGGGGTGAGGACAGGGTAGAAAGGAGAGGGCTC
AGCCTCAGACTGGGACAAG
mm4_intergenic_Cdk12|Mir5119_chr11_98255101 AGAAGATTCCTGCAGCCCAGGTTGGAAGACGCCTGTGGGGTCACTGTGGGGTCCCTGGTGCTGCCCATCCTTCCTCTCCT
TGCTAAGCTGTCACT
CCCTGTCCACCCACTTCCTTT
mm4_intergenic_Atp1a1|Mab21l3_chr3_101694488 GGCTTGGTCTCTGACACACAGGAACACATGGTGCCAACTAAGCAGATCACACTACCCTCCCCACCTGGAGAACAGCCTAG
AAATAAGTGG
GCTGTATGGTGAAGAGCCCACACTG
mm3_intergenic_Gm9931|Gm22966_chr1_147391084 CCCTCAGAATACTGTGTGAGACATACTGTTCTGGATTTCTGCTTAGAAAGAAGTGGTAAAAGTACATGCTTGCTAAAGGA
GTAGACA
mm4_intron_St5_chr7_109592153 GGATCGAGCGTGCAAGAGTATCAGCCTGAGCAAAGCATATCTAGTTATACCAATCACCTCATCTTTGAAAGCTGTCAACT
AGATCTCTCCTGCTCCACAGC
mm4_intergenic_Gm13216|Camk1d_chr2_5648683 GGGACTCTAAACCCATGGGCAGGTAGCAACTCAAGCTCAGAAAGAAGACAGATTAGCAAGGAGGGGGGAGAATATCAAAC
AGGATTAAGTATAGAAATTCCAAAGGCCTGTTTTGTGAAAGCT
mm4_intergenic_Gm22385|Snx18_chr13_113552661 CCTGCTGAGGACAGTCTAGCAAGGTGAAGACAGCTCAGACAGGAGGGGAAAGGTATACTCTTTAGTTTTAAAGGCTAAAA
CTGGGGGGATCCAATAGAATCAGAGGAAGGTTCTCAACTGT
mm4_intron_Zmat4_chr8_23922806 CTGGGAGCTGGTGATGGAAGTCTGTAATGACCCCTTGCTTTCTCAGCTGCCATCTTGTGGTGCCACTTGATGATCTGGTA
GAACTTTCTGTTGGCTTCCTTGGAAAACCTGC
mm3_intron_Cpvl_chr6_53946004 CCTGATAGAGGGACTGAATGTGATTTGATACTGAGCAACTGAGTATTAAAAAAAATATATGGAATGCTAAACCATCTTCT
CTGACAGCTTAGAAAAAAGGGA
AGACAGGCTCAAGAAATTCCTGTCTCACGAACTCGC
mm4_intron_Abca13_chr11_9505415 CTTCCCTGAGCACCTTGGTCCATCTCTGTTATGTGTCATAAGATTCCTTCAGGTACTCCAGCAGTATTCCTGCTTTCCCC
CCCTTCCTAAGCTGTCAAC
AGACATCCCTGTTGACACACTGGCTGCCTTATGGA
mm4_intron_Cage1_chr13_38017468 CGTGGCAAGGTCCTAAGGATAATGGTTTGAGAAACTAGATTGAAAGGTTTTCACTGAAGCTAAAACGGAGGAGGAGGACT
GTTTAGAAATAAGGGG
CCAAAGAAGGTAAACCACACTGAATCCCATGCT
mm4_intergenic_4930547M16Rik|2010001E11Rik_chr10_39909133 AGAAACGCCAGCAGCTAGTCCCACTAGAACAATGGTGGGCCTTTACTCACAGACGATGAGAGCCTAGGAAGAGGAGGAGG
GAACAGTTCCAAAGAAGGGCAGAGCTG
mm4_intergenic_Tars|Npr3_chr15_11470390 GGGGAGGGAGCACACATAACTTTTTTTTTTTTTAAGCAAACTTGCTGGCTTTTATTTGACCATTTCACCCCTTCCTACTA
AGATGTCTTC
ATCTTGTCCTCAAAGGTGCTGGA
mm4_intergenic_Gm23249|Gm9726/mmu-mir-8099-2_chr12_93827295 GCCGACTCCTTGAAAGTTGCTTAATTTGGCAGAATGCTAACAGTTATTTTTTCCAAAGGATATAGGAGGAGAGCTTGGAA
ATAAGAGG
TTTAATGGGAAGGTTACACCAAAGA
mm4_intergenic_B130011K05Rik|Gm12287_chr11_63535759 TCAGTGCACTTTGAGCCAGAGATTCCATTCAAAAATTTCTCTAGATCTAAGCTATTCTGTTCTGTTTTAAATACACCCCC
TTTCCTCCTGTTCTTTCACAGCTGTCTTCTTCTTTCCTTCCACCACCTGTCTCC
mm4_intergenic_Gm25736|Tmeff2_chr1_51033739 GACAAGCCCACACTTTTCACCTTAGGATTTTCAAGTATGACAGCTTATGCAGAAGTGGTAAAGAAGACCTGACTGGGTCT
GGTGTATGCATCG
mm4_intron_Col23a1_chr11_51294879 AAGGGAGTTTGAGACCTGGCCCTGATCTTTATAAGCTCTCATCTGACTTTTGCAAACTCCTTCCCTAAAGCCTCCCTTTT
CTAATGCAGTCATCTGACAGCACAGTAATGAGAGTGAGCAAGCCAATACCCAGAGC
mm4_intergenic_Ctnna3|Gm22829_chr10_66114373 GAGCATGTGTGTGGGAGTCAGGCACTATATTGCATAGACTATGGTACAGATGAAAGGAAGTTCACGCAGTTTGTAGACTC
CCATGACAGCCTAGAAAGACCAGGGGTTGCAAGAGAACGTGGGA
mm3_intron_Robo1_chr16_72890665 AGACCTTTTCAACTGTTCAAGTGAACCATCACTTCTTTCTGAGCTGTCACTCTCGACCATTTATGTCATAGTTTATCTTG
CTTACAAAAAGCACAGTTATCTATGGAAAAACCACACCACAAACAGCTTCC
mm4_intergenic_Fam173b|Tas2r119_chr15_32111432 AGAGTCCATGGCAGTTGCTCCCTGCCCATCCCTGCTTCCATTCCCTCCCTGCTACTCTTAATCAGGTGCCCTCTTGTTTC
TAAGGTGTGGTC
CTCGCCCCAGTGGGTGGGTTACTTCA
mm4_intergenic_E030013I19Rik|Fam188a_chr2_12329309 AAGCGAGCCTGCCTTCAGCACTTGTCCTCTTCTGTCACATCTGTCATCCATGCAGCTGGCAGCCCCCATGAGACTTGGGT
ATTAAAAGAACCATAAAATAATTCATTTTTTTTCTCACCAAAGGTTTTAGACACACA
mm4_intergenic_Gm9897|Fzd1_chr5_4650311 AAACTGTTGAACGTGGCAGCGATCAGACTTGACAGTGTTTCAGCAAACTTAACAAAACCCAAATGGCCTCAGAATTCCAC
AGCCCTCTTCTGTGTAACCAGTCATCACAGTTGGCAGGCCAGAACT
mm4_exon_Gm4890_chr8_79306469 TGCAGCAAACTGGAGCCTTAGCAAAAGGCTGCTCGCTAGCATGAGAAGCATTTGATTCCAGCTTGGAAACAAGGGGTGGG
GCAAAGCCTTTTTACCACCTCCACCCCATCT
mm4_intergenic_Il10rb|A930006K02Rik_chr16_91436660 GTAGTCCTTGTGGTGGTTCCAAACTCCAAACCACCCCTATCTAAGTTGTCATCCAAAACCTCAGGGCAACCCTTATGGGT
CACAAAACCCAAAAAGGATCTATCACTAACAAGAGACAGCAGGAACAATGGCC
mm4_intron_Pde4d_chr13_108802917 TGCCAGCCTAGAATGTGACTAATAGAAATAAATAATCAGAGGGAATTTATTAAACAGACTGACTTGAAGAGAGTCCCCCT
TCCCTATAAGCTGTCTTC
AACTCTACTGTCAGAGTAGCTCATTTTGGT
mm4_intron_Vps13d_chr4_145135645 AAAAGTGTGGCTCTCTGGGGCTGCAGCAAAGCTGACTCCTCAGCTTTGAAAAAGTTGAAAAGCCACAGCCTCTGCTTTCT
GAGCAGTAATC
AAAACGATCAGTAGTGCAAACTTCCTGCA
mm4_intergenic_Def6|Ppard_chr17_28229538 CGGCCCCACGTTTAGTAAGTCACTACCCCTGTGGTGCTATGACCAGAGGCCACTGCCTTCTAACCTGTCAGCTCCTAGTT
AACTAAGAGCTTCCCGGACTCCCTTCTAATTCTGCTGCCCGGATGG
mm4_intergenic_Clic5|Runx2_chr17_44358764 GGAGCACAACAGCTGGAACTAACTCACATCCTGATGACTGCTTCTGAAGAAGGGGCTGGTGGAGTGCTCCGACCTGGGGC
TTTGTTTCACTTTGCTGTGGTGCTCCCTA
mm4_intergenic_Pdgfc|Gm22531_chr3_81496345 TGCTGTGATGGAACCAGCAAGAGTTGTAAAACAAACTGTGATTTCTTTTGAAGATGACAGCTTATGAATGAGTGGTCATA
GGCCAAAAGGATGACTCTGGA
mm4_intron_Prlr_chr15_10306078 ACTGTGGCAGGTTCTGGATCCTTTTCCTTCTCTTGTGAGGGACTCTCAATATCCTCACTGAAGTGGTAAAGAAAAGTACA
ACTTAGAAAGAAGAGA
TAATTTTGACATATTCTTGGGGTGAATTTCTTGTTGGAC
mm4_intron_Atp2c1_chr9_105436451 AGCAGGCAAGCAGTACTTCTTTCTCTCCTTTTTCTAGAAAGCTGCTTTCTTCAGTCTTCCTCTCTTGTCCCTTCTTTCTA
AGTTGAGATG
TGAGGGCCTTTTGCACTAATGAATCAGGAACTCCCCTTAACCCACC
mm4_intergenic_Zcchc6|Gas1_chr13_59982885 AGGAGGTGACCAGGGCTAAATCTCAAAGGAAGAAACAAGGGGTTTTGGTGACAGCTTAGATGGCAGGGGAAGTAGTACAT
GAGCTAAAAACACTTCTGGGTCCCAGGTTTTATTTCCAAGGAAGTTGGGAGAGGAGACC
mm4_intron_Pdzd2_chr15_12433998 ACACCCCAGAAACCAGGTTGGTTTCTACTAACCTCAAGTGTGTCTACTCCCCTTGGAGACCCCTTCATTATAAGCTCTCA
TT
TACAGGGCACGGCATTCACTTTTTCTATGCGACCGCCCAGATGTTTACT
mm4_intron_Gm7942_chr5_95108284 GAGTCTGCCATGATGCCACTGTGGGGGACTGTCTTTCTATGACCTCTTAGAATGAAGAGGTAAATTGATGTCTCTACCAT
TGCATGAGCAGTAACTCAGAAGC
mm4_intron_AC140365.1_chr5_JH584299_random_717643 GAGTCTGCCATGATGCCACTGTGGGGGACTGTCTTTCTATGACCTCTTAGAATGAAGAGGTAAATTGATGTCTCTACCAT
TGCATGAGCAGTAACTCAGAAGC
mm4_intergenic_Gm6205|Gm3183_chr5_94778044 GAGTCTGCCATGATGCCACTGTGGGGGACTGTCTTTCTATGACCTCTTAGAATGAAGAGGTAAATTGATGTCTCTACCAT
TGCATGAGCAGTAACTCAGAAGC
mm4_intergenic_GM6367|AC123873.1_chr5_JH584299_random_90346 GAGTCTGCCATGATGCCACTGTGGGGGACTGTCTTTCTATGACCTCTTAGAATGAAGAGGTAAATTGATGTCTCTACCAT
TGCATGAGCAGTAACTCAGAAGC
mm4_intergenic_AC126035.1|Gm16367_chr5_JH584299_random_396846 GAGTCTGCCATGATGCCACTGTGGGGGACTGTCTTTCTATGACCTCTTAGAATGAAGAGGTAAATTGATGTCTCTACCAT
TGCATGAGCAGTAACTCAGAAGC
mm4_exon_Icam5/Gm26592_chr9_21037130 GATTCACGGACGGTCACTGTGGGTGTGGAATGTGAGTGAGGACAGCGCAGAATGAAGAGGACTGAGCCCGCTAGAAAAGT
GCCGTGA

Input file for Crispresso

Crispresso, written by Luca Pinello, is a software package to quantify the Cas9-induced mutations on off- or on-targets.

Click here to download an amplicon input file for Crispresso. For each off-target, it includes the off-target name, its PCR amplicon and the guide sequence. Keep a copy of this file.

After sequencing, run CRISPRessoPooled. The tool will map the reads to the amplicons and analyse the mutations:
CRISPRessoPooled -r1 Reads1.fastq.gz -r2 Reads2.fastq.gz -f crisporAmplicons_mN1FkRligAThyqKv3eg3.txt --name MY_EXPERIMENT

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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.