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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| mm0_exon_Pop5_chr5_115238085_F | TCGTCGGCAGCGTCTGCGGTTCAAGCACAGGTAA | 60.1 | 1.00 |
| mm0_exon_Pop5_chr5_115238085_R | GTCTCGTGGGCTCGGCTCGCACAGAAGGTACCTGC | 60.7 | 1.00 |
| mm4_exon_Agpat2_chr2_26603918_F | TCGTCGGCAGCGTCCTACAAGCGGCGCACATC | 59.2 | 0.64 |
| mm4_exon_Agpat2_chr2_26603918_R | GTCTCGTGGGCTCGGCCTCGCGTTCTTTCCTTCCT | 60.0 | 0.64 |
| mm3_exon_Fibcd1_chr2_31845983_F | Primer3: not found at this Tm | N.d. | 0.60 |
| mm3_exon_Fibcd1_chr2_31845983_R | Primer3: not found at this Tm | N.d. | 0.60 |
| mm4_intergenic_Banp|Gm22_chr8_122172637_F | TCGTCGGCAGCGTCCCATTCACCCTACAGCCTGG | 60.1 | 0.60 |
| mm4_intergenic_Banp|Gm22_chr8_122172637_R | GTCTCGTGGGCTCGGCCAGCTGCAGAACCTTCAGA | 59.9 | 0.60 |
| mm3_intron_Pmp22_chr11_63132535_F | TCGTCGGCAGCGTCGGCTGAAGGCTCTTCACCC | 60.3 | 0.58 |
| mm3_intron_Pmp22_chr11_63132535_R | GTCTCGTGGGCTCGGCTCGGCCTAGATGCTGGC | 59.9 | 0.58 |
| mm4_intron_Aff4_chr11_53351182_F | TCGTCGGCAGCGTCGGGAAATGGTTCGGGCCTAG | 60.4 | 0.49 |
| mm4_intron_Aff4_chr11_53351182_R | GTCTCGTGGGCTCGGGGTCTCCGCCAGCGTCAG | 62.8 | 0.49 |
| mm4_intergenic_Dpy19l1|Dpy19l2_chr9_24503221_F | TCGTCGGCAGCGTCCTCACTCTGGCCGGCGAG | 62.5 | 0.47 |
| mm4_intergenic_Dpy19l1|Dpy19l2_chr9_24503221_R | GTCTCGTGGGCTCGGCCCTGGCAACCCGAGAGC | 62.7 | 0.47 |
| mm4_exon_Kcnb1_chr2_167189986_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_exon_Kcnb1_chr2_167189986_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm9727|Btbd8_chr5_107479359_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm9727|Btbd8_chr5_107479359_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Kalrn|Ropn1_chr16_34573926_F | TCGTCGGCAGCGTCCTAGGCCGGCTTCCTGAG | 59.1 | 0.35 |
| mm4_intergenic_Kalrn|Ropn1_chr16_34573926_R | GTCTCGTGGGCTCGGGACCCGGAGCTTGCGGAG | 62.8 | 0.35 |
| mm4_intron_Gata4_chr14_63255791_F | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_intron_Gata4_chr14_63255791_R | Primer3: not found at this Tm | N.d. | 0.35 |
| mm4_exon_C1qc_chr4_136890572_F | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_exon_C1qc_chr4_136890572_R | Primer3: not found at this Tm | N.d. | 0.34 |
| mm4_intergenic_Gm11746|Slc24a3_chr2_145167692_F | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Gm11746|Slc24a3_chr2_145167692_R | Primer3: not found at this Tm | N.d. | 0.33 |
| mm4_intergenic_Cmpk2|Gm9866_chr12_26486850_F | Primer3: not found at this Tm | N.d. | 0.32 |
| mm4_intergenic_Cmpk2|Gm9866_chr12_26486850_R | Primer3: not found at this Tm | N.d. | 0.32 |
| mm3_intergenic_Chrdl2|Pold3_chr7_100042276_F | TCGTCGGCAGCGTCACGGGCTTTGATTCGTGACT | 59.9 | 0.30 |
| mm3_intergenic_Chrdl2|Pold3_chr7_100042276_R | GTCTCGTGGGCTCGGAACAAACACGTCCCACAAGC | 59.5 | 0.30 |
| mm4_exon_Slc7a5_chr8_121907491_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_exon_Slc7a5_chr8_121907491_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_exon_Fbxl16_chr17_25819903_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_exon_Fbxl16_chr17_25819903_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm12904|1700121C08Rik_chr4_123842070_F | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_intergenic_Gm12904|1700121C08Rik_chr4_123842070_R | Primer3: not found at this Tm | N.d. | 0.27 |
| mm4_exon_Sept3_chr15_82275300_F | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_exon_Sept3_chr15_82275300_R | Primer3: not found at this Tm | N.d. | 0.26 |
| mm4_intron_Zfp398_chr6_47835952_F | TCGTCGGCAGCGTCGGTAAGGGCGCTGATGGAC | 60.5 | 0.23 |
| mm4_intron_Zfp398_chr6_47835952_R | GTCTCGTGGGCTCGGCAAACGACAGCCGCAGAC | 59.4 | 0.23 |
| mm4_intergenic_Gzmk|BC067074_chr13_113293228_F | TCGTCGGCAGCGTCCGCGCAGGTAGAGCTCGG | 62.9 | 0.23 |
| mm4_intergenic_Gzmk|BC067074_chr13_113293228_R | GTCTCGTGGGCTCGGCCCCAGAAAGGCGGTGAG | 60.0 | 0.23 |
| mm4_intergenic_Gm12249|Larp1_chr11_58008859_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm12249|Larp1_chr11_58008859_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm3_intron_Rnf130_chr11_50025677_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm3_intron_Rnf130_chr11_50025677_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Tm9sf3_chr19_41263990_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_exon_Tm9sf3_chr19_41263990_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Gm24720|Tshz1_chr18_83936519_F | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_intergenic_Gm24720|Tshz1_chr18_83936519_R | Primer3: not found at this Tm | N.d. | 0.21 |
| mm4_exon_Rbm15_chr3_107332581_F | TCGTCGGCAGCGTCCCAGCTCGCTGATCTTCAGG | 60.5 | 0.21 |
| mm4_exon_Rbm15_chr3_107332581_R | GTCTCGTGGGCTCGGGAGTCACGTTCCTCCGGG | 59.4 | 0.21 |
| mm4_intron_6330403A02Rik_chr1_180483062_F | TCGTCGGCAGCGTCGACACATCCACGGGTCTCAG | 60.1 | 0.19 |
| mm4_intron_6330403A02Rik_chr1_180483062_R | GTCTCGTGGGCTCGGGTGCCGGGATTGGGTAAGAA | 60.0 | 0.19 |
| mm4_intron_Mdm1_chr10_118141981_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intron_Mdm1_chr10_118141981_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm3_intron_Grlf1_chr7_16614282_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm3_intron_Grlf1_chr7_16614282_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Nudt9_chr5_104047125_F | TCGTCGGCAGCGTCTCAGTGACTGTCCGGTCCTC | 60.8 | 0.18 |
| mm4_exon_Nudt9_chr5_104047125_R | GTCTCGTGGGCTCGGAAAAGGAAGGAGGGGATCGC | 59.7 | 0.18 |
| mm4_exon_Tbc1d2b_chr9_90270686_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Tbc1d2b_chr9_90270686_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm13780|Phf21a_chr2_92183681_F | TCGTCGGCAGCGTCCCCAGCTCCAGTCCCTCT | 59.9 | 0.17 |
| mm4_intergenic_Gm13780|Phf21a_chr2_92183681_R | GTCTCGTGGGCTCGGCAGGCCCAGACACACTCG | 60.0 | 0.17 |
| mm3_exon_Itga5_chr15_103366674_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm3_exon_Itga5_chr15_103366674_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_exon_Fbxo30_chr10_11281570_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_exon_Fbxo30_chr10_11281570_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm3_intergenic_Elmod1|Tnfaip8l3_chr9_53975358_F | TCGTCGGCAGCGTCGTTTCCCTGGGAGCAAGACG | 60.9 | 0.16 |
| mm3_intergenic_Elmod1|Tnfaip8l3_chr9_53975358_R | GTCTCGTGGGCTCGGGGCCAAGTGCGCAGTTTTAA | 59.9 | 0.16 |
| mm4_exon_Gclc_chr9_77754636_F | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_exon_Gclc_chr9_77754636_R | Primer3: not found at this Tm | N.d. | 0.16 |
| mm4_intron_Ahi1_chr10_20952794_F | TCGTCGGCAGCGTCCTCTCTGTGAGTATCCCGCG | 59.6 | 0.16 |
| mm4_intron_Ahi1_chr10_20952794_R | GTCTCGTGGGCTCGGGAGCATCCCACAGTCTCCG | 59.8 | 0.16 |
| mm4_exon_Atp8b1_chr18_64660909_F | TCGTCGGCAGCGTCGACTCCTCAGGCTCTCGTGG | 61.6 | 0.15 |
| mm4_exon_Atp8b1_chr18_64660909_R | GTCTCGTGGGCTCGGCCCTGGAGCAGAGAAACCAG | 60.0 | 0.15 |
| mm4_intron_Rnf219_chr14_104522373_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intron_Rnf219_chr14_104522373_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Zfand4|March8_chr6_116337931_F | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_intergenic_Zfand4|March8_chr6_116337931_R | Primer3: not found at this Tm | N.d. | 0.15 |
| mm4_exon_Sbk1_chr7_126273071_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Sbk1_chr7_126273071_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_exon_Gm26776/Ccdc3_chr2_5137874_F | TCGTCGGCAGCGTCTAGCCGTGCACCCAGCTC | 62.0 | 0.14 |
| mm3_exon_Gm26776/Ccdc3_chr2_5137874_R | GTCTCGTGGGCTCGGCTACGCTCTAGCCCGGGC | 61.9 | 0.14 |
| mm4_intergenic_Gm9755|Nat3_chr8_67523119_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm9755|Nat3_chr8_67523119_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_B4galt3_chr1_171270381_F | TCGTCGGCAGCGTCCCAAGATGGCTGCAGCGATA | 60.5 | 0.13 |
| mm4_exon_B4galt3_chr1_171270381_R | GTCTCGTGGGCTCGGACTCTCTCTCTCCGTGGTCC | 60.0 | 0.13 |
| mm4_intron_Slc2a1_chr4_119109249_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Slc2a1_chr4_119109249_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_C230037L18Rik|Shank3_chr15_89499579_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_C230037L18Rik|Shank3_chr15_89499579_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Ppm1h|Mirlet7i_chr10_122985563_F | TCGTCGGCAGCGTCCGGGGAGCTAACGGTTTCC | 60.4 | 0.13 |
| mm4_intergenic_Ppm1h|Mirlet7i_chr10_122985563_R | GTCTCGTGGGCTCGGGCTACTGCCTTGCTAGTGCT | 60.1 | 0.13 |
| mm4_intergenic_Gm26843/Gnao1|Gnao1_chr8_93810429_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm26843/Gnao1|Gnao1_chr8_93810429_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Cpeb2/Gm7854_chr5_43234703_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Cpeb2/Gm7854_chr5_43234703_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Usp9x_chrX_13072730_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Usp9x_chrX_13072730_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Camk2n1|Vwa5b1_chr4_138462806_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Camk2n1|Vwa5b1_chr4_138462806_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Ralgds_chr2_28533476_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Ralgds_chr2_28533476_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Igf2bp3_chr6_49214416_F | TCGTCGGCAGCGTCCCGGGATCTTAGCGTCCTTG | 60.2 | 0.10 |
| mm4_exon_Igf2bp3_chr6_49214416_R | GTCTCGTGGGCTCGGTCGGGTTTTAAAACGACCCCT | 59.8 | 0.10 |
| mm4_intron_Snx6_chr12_54795580_F | TCGTCGGCAGCGTCAAGAGAGACATTAGCGCCCA | 58.8 | 0.10 |
| mm4_intron_Snx6_chr12_54795580_R | GTCTCGTGGGCTCGGGGACTCGAAGCAGCCATGAT | 60.1 | 0.10 |
| mm4_intron_Hdac2_chr10_36974825_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Hdac2_chr10_36974825_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm3_intron_Gm15608_chr10_82178505_F | TCGTCGGCAGCGTCCGGAATCCGCACCATGGT | 60.1 | 0.10 |
| mm3_intron_Gm15608_chr10_82178505_R | GTCTCGTGGGCTCGGGAGCGTGAGTTCCAGGGAC | 60.0 | 0.10 |
| mm4_intron_Eif5a2_chr3_28781426_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Eif5a2_chr3_28781426_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Atp11c|Gm7073_chrX_60404065_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intergenic_Atp11c|Gm7073_chrX_60404065_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Usp2_chr9_44084846_F | TCGTCGGCAGCGTCAGGGTCATCGGCTTTGGG | 59.3 | 0.09 |
| mm4_intron_Usp2_chr9_44084846_R | GTCTCGTGGGCTCGGCAGCTTTGCGACGTCAGC | 59.8 | 0.09 |
| mm4_exon_Ppp2r3d_chr9_124424000_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Ppp2r3d_chr9_124424000_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Cacna1b_chr2_24762962_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Cacna1b_chr2_24762962_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Yy1_chr12_108793966_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Yy1_chr12_108793966_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Il17d_chr14_57525157_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Il17d_chr14_57525157_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Cd63_chr10_128910154_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Cd63_chr10_128910154_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Sar1a_chr10_61680479_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Sar1a_chr10_61680479_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Dennd1b_chr1_138963686_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Dennd1b_chr1_138963686_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm12341|Abr_chr11_76562016_F | TCGTCGGCAGCGTCAAAGCTCTGGGCAGTTGAGG | 60.2 | 0.06 |
| mm4_intergenic_Gm12341|Abr_chr11_76562016_R | GTCTCGTGGGCTCGGTCCTGGGGTCCTGTTCTGTC | 60.8 | 0.06 |
| mm4_intergenic_Ppp3r1|Wdr92/Ppp3r1_chr11_17159798_F | TCGTCGGCAGCGTCCTCCCCGAGATTCGCCGC | 62.9 | 0.06 |
| mm4_intergenic_Ppp3r1|Wdr92/Ppp3r1_chr11_17159798_R | GTCTCGTGGGCTCGGAAAAGGCCGAACGAGCCAG | 60.9 | 0.06 |
| mm4_intergenic_Gm10797|Zfp365_chr10_67777114_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm10797|Zfp365_chr10_67777114_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gab1|Gm27048/Gm4891_chr8_80880608_F | TCGTCGGCAGCGTCGGGATCTGTAGTCAGCAGGC | 59.8 | 0.06 |
| mm4_intergenic_Gab1|Gm27048/Gm4891_chr8_80880608_R | GTCTCGTGGGCTCGGCACTCCCGCTCTCACACTG | 60.0 | 0.06 |
| mm4_exon_Tbc1d4_chr14_101608150_F | TCGTCGGCAGCGTCTGCTCGAAGATGAACACCCC | 60.0 | 0.06 |
| mm4_exon_Tbc1d4_chr14_101608150_R | GTCTCGTGGGCTCGGGAGGTGATCCTGGTGCTCAG | 59.8 | 0.06 |
| mm4_intergenic_Gm16195|Srsf3_chr17_29032421_F | TCGTCGGCAGCGTCTAGGCGGAAGTGGAGGAGAG | 60.3 | 0.06 |
| mm4_intergenic_Gm16195|Srsf3_chr17_29032421_R | GTCTCGTGGGCTCGGGTTCCGTCAGGTGGGTGG | 59.9 | 0.06 |
| mm4_exon_Zfp664_chr5_124863026_F | TCGTCGGCAGCGTCACAACCCATCCTTCAACCGG | 60.2 | 0.06 |
| mm4_exon_Zfp664_chr5_124863026_R | GTCTCGTGGGCTCGGGCCTCTTCTGCCTCATCCC | 59.8 | 0.06 |
| mm4_intergenic_Kcnj8|Abcc9_chr6_142571399_F | TCGTCGGCAGCGTCAGGTGCGATCCATAGTGCAC | 60.1 | 0.06 |
| mm4_intergenic_Kcnj8|Abcc9_chr6_142571399_R | GTCTCGTGGGCTCGGCACCTCTATCCCCAGCTCCT | 60.1 | 0.06 |
| mm4_intron_Nr5a1_chr2_38711805_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Nr5a1_chr2_38711805_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Slc35f1|Gm25664_chr10_52691567_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Slc35f1|Gm25664_chr10_52691567_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Shank3_chr15_89499735_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Shank3_chr15_89499735_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Grin2b/Gm26653|Grin2b_chr6_136173328_F | TCGTCGGCAGCGTCCAGCAGGAGAGGAAGAGCAG | 59.8 | 0.05 |
| mm4_intergenic_Grin2b/Gm26653|Grin2b_chr6_136173328_R | GTCTCGTGGGCTCGGCACGTTCCTGGGTGTGAGAC | 60.6 | 0.05 |
| mm4_exon_Brd3_chr2_27475364_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Brd3_chr2_27475364_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm13012|Ece1_chr4_137897857_F | TCGTCGGCAGCGTCGCCCTCAGTTTTCCCATCCC | 60.6 | 0.05 |
| mm4_intergenic_Gm13012|Ece1_chr4_137897857_R | GTCTCGTGGGCTCGGTGTCCCCATCCACAAATGCA | 59.8 | 0.05 |
| mm4_intergenic_Chd6|Gm14243_chr2_161109341_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Chd6|Gm14243_chr2_161109341_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Gm5229|Crim1_chr17_78200142_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm5229|Crim1_chr17_78200142_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Scarf2_chr16_17797394_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Scarf2_chr16_17797394_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Nf1_chr11_79339980_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Nf1_chr11_79339980_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Arhgef16_chr4_154299870_F | TCGTCGGCAGCGTCGTCTTCCCCTTGGCTGACTC | 60.0 | 0.04 |
| mm4_exon_Arhgef16_chr4_154299870_R | GTCTCGTGGGCTCGGAGGAAGTAGAGAGGGCGGG | 60.0 | 0.04 |
| mm4_intron_Rala_chr13_17943812_F | TCGTCGGCAGCGTCCTTGAAAGCGAGGGAGGTCG | 60.7 | 0.03 |
| mm4_intron_Rala_chr13_17943812_R | GTCTCGTGGGCTCGGAAGGTCACCTGTATAGCGCC | 59.5 | 0.03 |
| mm3_intron_Sctr_chr1_120007340_F | TCGTCGGCAGCGTCCTGCTGCTCATCAATGCAGC | 60.2 | 0.03 |
| mm3_intron_Sctr_chr1_120007340_R | GTCTCGTGGGCTCGGGAAGAGAGATCGGCTGCTCC | 59.9 | 0.03 |
| mm4_intergenic_Ccdc105|Slc1a6_chr10_78780364_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Ccdc105|Slc1a6_chr10_78780364_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Gm8770_chrX_78785863_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Gm8770_chrX_78785863_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Ephb2_chr4_136835893_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Ephb2_chr4_136835893_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tm2d3|Gm7551_chr7_65702966_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Tm2d3|Gm7551_chr7_65702966_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm25266|Cradd_chr10_95136497_F | TCGTCGGCAGCGTCCCATGAAGTGGTGGTGTTTTCC | 59.9 | 0.03 |
| mm4_intergenic_Gm25266|Cradd_chr10_95136497_R | GTCTCGTGGGCTCGGTTTCTGCTCCCACAGGCATC | 60.3 | 0.03 |
| mm4_intron_Fryl_chr5_73255904_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Fryl_chr5_73255904_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Homer3_chr8_70283048_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Homer3_chr8_70283048_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Usp15|Usp15/AC158802.1_chr10_123196796_F | TCGTCGGCAGCGTCGACCTGTCCGCACCTGTC | 60.0 | 0.03 |
| mm4_intergenic_Usp15|Usp15/AC158802.1_chr10_123196796_R | GTCTCGTGGGCTCGGTCAAAACCTCGCTCCGGAAA | 59.8 | 0.03 |
| mm4_intron_Cep135_chr5_76588958_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Cep135_chr5_76588958_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Kmt2d|Rhebl1_chr15_98871542_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Kmt2d|Rhebl1_chr15_98871542_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Slc45a4_chr15_73645506_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Slc45a4_chr15_73645506_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Gm10657/Cd276_chr9_58555036_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Gm10657/Cd276_chr9_58555036_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gria4|Gm24896_chr9_4977682_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gria4|Gm24896_chr9_4977682_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm2_exon_Peli1_chr11_21091606_F | TCGTCGGCAGCGTCCTGGTGCCTGCGTTCAAC | 59.3 | 0.02 |
| mm2_exon_Peli1_chr11_21091606_R | GTCTCGTGGGCTCGGCTCACCGGACGACTGCTG | 60.1 | 0.02 |
| mm4_intergenic_Suv39h1|Suv39h1/Gm14820_chrX_8074373_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Suv39h1|Suv39h1/Gm14820_chrX_8074373_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Drd4_chr7_141294210_F | TCGTCGGCAGCGTCTTTACTGGGCCACTTTCCGC | 60.8 | 0.02 |
| mm4_exon_Drd4_chr7_141294210_R | GTCTCGTGGGCTCGGGCAGTCTGGGAAGAAGGGAC | 60.0 | 0.02 |
| mm4_exon_Fam211a_chr11_62648020_F | TCGTCGGCAGCGTCGACAGGTCAGCCTTCCTCAC | 60.0 | 0.02 |
| mm4_exon_Fam211a_chr11_62648020_R | GTCTCGTGGGCTCGGGGGTGACAGGAGAGCGCC | 62.4 | 0.02 |
| mm4_intergenic_Bend6|Dst_chr1_33908183_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Bend6|Dst_chr1_33908183_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Prkcb_chr7_122289278_F | TCGTCGGCAGCGTCCTAGTCCCGCGCCTTTCC | 60.2 | 0.02 |
| mm4_exon_Prkcb_chr7_122289278_R | GTCTCGTGGGCTCGGCCGGGTCAGCCATCTTGC | 60.8 | 0.02 |
| mm4_intergenic_Evx2|Hoxd13_chr2_74667870_F | TCGTCGGCAGCGTCGGGTGGCTGCAAAGTCAACT | 61.1 | 0.02 |
| mm4_intergenic_Evx2|Hoxd13_chr2_74667870_R | GTCTCGTGGGCTCGGCACCCCTCTTCAGCCCTTTG | 60.6 | 0.02 |
| mm3_intron_Rab31_chr17_65729985_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_Rab31_chr17_65729985_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_N4bp2l1|N4bp2l2_chr5_150594564_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_N4bp2l1|N4bp2l2_chr5_150594564_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Eif4h|Limk1_chr5_134639368_F | TCGTCGGCAGCGTCGTCTCCGCTCCTTGAGGAAC | 60.1 | 0.01 |
| mm4_intergenic_Eif4h|Limk1_chr5_134639368_R | GTCTCGTGGGCTCGGGACTTGCGATCAGGCAGCG | 61.8 | 0.01 |
| mm4_intergenic_Fbxo11|Gm4832_chr17_88065366_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fbxo11|Gm4832_chr17_88065366_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_4930515G01Rik/Ankrd13a_chr5_114774982_F | TCGTCGGCAGCGTCTCGGTTCGCGAGCTGTCA | 61.6 | 0.01 |
| mm4_exon_4930515G01Rik/Ankrd13a_chr5_114774982_R | GTCTCGTGGGCTCGGCAAGGGCCTCCGAGTCCG | 62.1 | 0.01 |
| mm4_intron_Mgat5_chr1_127304727_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Mgat5_chr1_127304727_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_BC052040|Meis2_chr2_115859176_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_BC052040|Meis2_chr2_115859176_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Actg1/mmu-mir-6935_chr11_120347905_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Actg1/mmu-mir-6935_chr11_120347905_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zfp644/RP24-421H18.2_chr5_106696263_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zfp644/RP24-421H18.2_chr5_106696263_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm0_exon_Pop5_chr5_115238085 |
TGCGGTTCAAGCACAGGTAAGCAGCGCTGTCCCCGCGCCGTCCCCGCGACCCGGGCCGCGCTCACCCCGCTGTCGCCGCA GGTACCTTCTGTGCGAG |
| mm4_exon_Agpat2_chr2_26603918 |
CTACAAGCGGCGCACATCGTGACACGCGCCCCTGGGACGGGAAGCCGCGTCGTCGGAGGCTCCGGACCGTGGGGACGGCG GGGCGGGCGGGGCAGGAAGGAAAGAACGCGAGG |
| mm4_intergenic_Banp|Gm22_chr8_122172637 |
CCATTCACCCTACAGCCTGGCCCCTGCTGTCCCTGCGACCCAGGGTCTAGTAAGTGCCCTGATGCCGCATCAAAGCCTGT CATGTACACTCATGACCGGGACTGCACCTCTGAAGGTTCTGCAGCTGG |
| mm3_intron_Pmp22_chr11_63132535 |
GGCTGAAGGCTCTTCACCCCCCGGGGCGCAGGGAAGGCGCGGAACCCTGCGCGCGGGAAGCTCCGGAGCCGGGCAATCCT CCAGCCCGCCTGCTCTCCCGCTCCCCCAGCCGCCAGCATCTAGGCCGAG |
| mm4_intron_Aff4_chr11_53351182 |
GGGAAATGGTTCGGGCCTAGCGGAGCGGGGACTGGAGGTGAGAAGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT CTGAGGCGCGGCCGCGCCGCGGGGAAGGCGAGGCTCCGGCCGCTGACGCTGGCGGAGACC |
| mm4_intergenic_Dpy19l1|Dpy19l2_chr9_24503221 |
CTCACTCTGGCCGGCGAGGGCGGGCCGGGAGGCGGGGACAGCGCGGGCCGTGTGGCCGCTGCCTACCGCGTGGCGGCCGA GAGGCGGCGCCGGACTCCCGCGCCTCCGCCGTTGCCGCTCTCGGGTTGCCAGGG |
| mm4_intergenic_Kalrn|Ropn1_chr16_34573926 |
CTAGGCCGGCTTCCTGAGCCCCGCAGGAAAAGCCCGGGCCGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC TCCCGGCTTGCGGGGGACTCAGCGGCCGCCGCCGCAAGCTCCGCAAGCTCCGGGTC |
| mm3_intergenic_Chrdl2|Pold3_chr7_100042276 |
ACGGGCTTTGATTCGTGACTCCGGCGTGGACCCAGACGCTAATTAAAATCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNA CAAAGCCCGCTTTGACCTGGCGGCACAGGCCAGGCTTGTGGGACGTGTTTGTT |
| mm4_intron_Zfp398_chr6_47835952 |
GGTAAGGGCGCTGATGGACGGGCGTCTCTGTCACCCGGGCCTCGGGGGAGGCGAGGGAGCTGGGGACGGCAGCGGGCCTT GTGGCCCGCGTGGGTCTGCGGCTGTCGTTTG |
| mm4_intergenic_Gzmk|BC067074_chr13_113293228 |
CGCGCAGGTAGAGCTCGGCGCGGGCCCCGGAGACGGCGCGGCGGGATGGGGCGGCCCGGGGCCTGCGGCCTCCTGTTGCT CACCGCCTTTCTGGGG |
| mm4_exon_Rbm15_chr3_107332581 |
CCAGCTCGCTGATCTTCAGGGTCTTGTACTCCACGCCGTCCCCGCCGCCGGGCGCGGAGGAGGCGGCCCCGGAGGAACGT GACTC |
| mm4_intron_6330403A02Rik_chr1_180483062 |
GACACATCCACGGGTCTCAGCCAGTGCCTACCTCTGCCCTGCCTGGTCTCCATCAGGCAGCCCAGGTCGCAGGGACCGCA GGGGTTAAAGGGGTCACAAGGGTCGCCCACACACACACTTCTTACCCAATCCCGGCAC |
| mm4_exon_Nudt9_chr5_104047125 |
TCAGTGACTGTCCGGTCCTCAGCCTGCCGCGCCGTCCCCGCACCCAGGTACCCCGATTCTAGGACGGGCTGCGGTTCCGA GACCTCGGGTGGACCTGCGATCCCCTCCTTCCTTTT |
| mm4_intergenic_Gm13780|Phf21a_chr2_92183681 |
CCCAGCTCCAGTCCCTCTCGCCCGGCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNGCTCCCGCGCGGGCGAGTGTGTCTGGGCCTG |
| mm3_intergenic_Elmod1|Tnfaip8l3_chr9_53975358 |
GTTTCCCTGGGAGCAAGACGCTGGCGGCTACTGAGCATGCTCAGTCGCGGAANNNNNNNNNNNNNNNNNNNNNNNNAGGA GTGAGCTCAGGCCCCCGCGCCAGAATGTGGGAAGAAAGGGTTAAAACTGCGCACTTGGCC |
| mm4_intron_Ahi1_chr10_20952794 |
CTCTCTGTGAGTATCCCGCGGGCGCGCTGTGGCGGAGGCTCTGGCCTGCCCGGTCCCCGGGGGCGGCGAGGGGGCACCCG GAGACTGTGGGATGCTC |
| mm4_exon_Atp8b1_chr18_64660909 |
GACTCCTCAGGCTCTCGTGGCTCGCCAAGGGCTCCCCGCCTTCCCCCCGCCCCGCGTCCGTGCGCCCTTCCTAGGCGGCA GCCCTTTTCCCTCCGCTCTGCCCGACCGGACAAACTGGTTTCTCTGCTCCAGGG |
| mm3_exon_Gm26776/Ccdc3_chr2_5137874 |
TAGCCGTGCACCCAGCTCTCCGGAGCGCGTGCAGGCGAGCCGAGCGCCCCGTCCGCGGTTCTCGGGCAGGCGCTGCGGGC TCCCCGGCTCCCCGCCGTCCCGGGCACCCGGGCGGGCCATGCGCCCGGGCTAGAGCGTAG |
| mm4_exon_B4galt3_chr1_171270381 |
CCAAGATGGCTGCAGCGATACCTGCCCGGTTGTCCGGGTGGCGGTGACGACGGGGAGCAGACCAGGTATGGTGGGCTGGG GACCACGGAGAGAGAGAGT |
| mm4_intergenic_Ppm1h|Mirlet7i_chr10_122985563 |
CGGGGAGCTAACGGTTTCCGCGCCGGCCGTGCGGTCCCCGCGCCCCGGAAAACAAAGGGGATCCCCGGCCATTGTCCTCC GCGGCGCTGAGCATCACCAGCACTAGCAAGGCAGTAGC |
| mm4_exon_Igf2bp3_chr6_49214416 |
CCGGGATCTTAGCGTCCTTGAAGACACTTTCCAGGTCCGCGGGGCCGGCGTGGTCGCTGAGGTTCCCGATGTACAATTTG TTCATTGTGAAAAGGGGTCGTTTTAAAACCCGA |
| mm4_intron_Snx6_chr12_54795580 |
AAGAGAGACATTAGCGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCGGCGCCGCCGTG AACACCCACCATCATGGCTGCTTCGAGTCC |
| mm3_intron_Gm15608_chr10_82178505 |
CGGAATCCGCACCATGGTGAGCGGGACCGCCGTCCCCACGCGGGCGGAGCCGCGGGAGCCTGTTCGCCCTGGGCTGCGGG GACGGCGAAGAAACGTGGCACGCCAGGAGGTCTCTGCAGTCCCTGGAACTCACGCTC |
| mm4_intron_Usp2_chr9_44084846 |
AGGGTCATCGGCTTTGGGCGGGCCCTGCGACCTCGCCGGCGTCCGCGTGCCAACTCCNNNNNNNNNNNNNNNNNNNNNNN NNNNNTGGTCCGGGTCCGGCTCTGCCCCTGCCCCTCCCCGGCGCTGACGTCGCAAAGCTG |
| mm4_intergenic_Gm12341|Abr_chr11_76562016 |
AAAGCTCTGGGCAGTTGAGGGGTGGTCAGCACGGCAGCAAGGCTGAGCCTCTGTGTTGGTTACATTCTGGAATCAAGGGT CGCGGGGAGGGCTAGGAGGCAGGGACAGAACAGGACCCCAGGA |
| mm4_intergenic_Ppp3r1|Wdr92/Ppp3r1_chr11_17159798 |
CTCCCCGAGATTCGCCGCCCCCGCCCTCCGCACGACCCTGGGCCTCCGGGCGCCCACAGAGCCGCCGCCCCCGGGCTCCT AAGCCCGTGGGCCTCCGCGCAACCCCGGCCCCGTCGCCTGTCTGGCTCGTTCGGCCTTTT |
| mm4_intergenic_Gab1|Gm27048/Gm4891_chr8_80880608 |
GGGATCTGTAGTCAGCAGGCGCGCTGGGGTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGGAAGGCGGCGGTCT CCGGGAACGCAGCGCCACCCCAGTGTGAGAGCGGGAGTG |
| mm4_exon_Tbc1d4_chr14_101608150 |
TGCTCGAAGATGAACACCCCGGTGTTGGGCTGCACAGCCCCGGAGCCTGCGCCCCCGCCGACCCCGGCACCCGGCGCAGG GACACAACGCAGAAAGGGGGCGCTGAGCACCAGGATCACCTC |
| mm4_intergenic_Gm16195|Srsf3_chr17_29032421 |
TAGGCGGAAGTGGAGGAGAGGGGGCGTCTGCGCGGCTCGCGGGGATGGCCGGGCCGAGCGCCGCATCTGCGGGACAAGCC GGCACGCGGCGACGAGCTCGCGCCACCGCGCGTACCCCACCCACCTGACGGAAC |
| mm4_exon_Zfp664_chr5_124863026 |
ACAACCCATCCTTCAACCGGGCCTGGGCCGCGGGCATGGCGAGGAGGGAAGGGAAGGTCAGCGCGGTGCCCGCTGCGGCG CAGGGCCCGGGTCGGGCGCGGGATGAGGCAGAAGAGGC |
| mm4_intergenic_Kcnj8|Abcc9_chr6_142571399 |
AGGTGCGATCCATAGTGCACGCGGGGAGGAGGGCTGGAAGATGAGGGTTGGGTTTGGCTTCCCCCCTCCTGCTGCCGGGC CACGGGGAGGGCGGGGTAGGAGCTGGGGATAGAGGTG |
| mm4_intergenic_Grin2b/Gm26653|Grin2b_chr6_136173328 |
CAGCAGGAGAGGAAGAGCAGGGGAGGAGGGGGAGAGTAAGAAAAATGGGTATTAATCACCGGCGACGCGGGGAGGGCGGG GACATCAAAGGTCCTGGTCTTGATTTGGGTCTCACACCCAGGAACGTG |
| mm4_intergenic_Gm13012|Ece1_chr4_137897857 |
GCCCTCAGTTTTCCCATCCCAATCTCAAACATCTTTTCTCTTGTTATCGCTAATTCCAGAGAAGGTTGTCCCCCCGCCAT CCCCCCGCCCCGTGACAATAACGGGTGCTTTTGCATTTGTGGATGGGGACA |
| mm4_exon_Arhgef16_chr4_154299870 |
GTCTTCCCCTTGGCTGACTCTCCAGTCCCCAGACTCACCTGTGCGCGCAACCGAGGGTCGGCCGGGAGGGTGTAGCCTGC AGTGCCGCTGGGTCCCCGCGTCCCGGGGCCGGCCGGTCCCGCCCTCTCTACTTCCT |
| mm4_intron_Rala_chr13_17943812 |
CTTGAAAGCGAGGGAGGTCGGGGTGGAGTGCGGCGCAGGGACTNNNNNNNNNNNNNNNNNNNNCCCAGGTCGCGGGCACC GCCCGGGCACAGCCCTGGGAGCCACCGGCGCTATACAGGTGACCTT |
| mm3_intron_Sctr_chr1_120007340 |
CTGCTGCTCATCAATGCAGCGCACCCTGTGAGTACCCCGCCCCGTCCCCGCGCCCCCGGATGTGGACCCCACGGACCAGT CCACGGTCCTCTATCCGGCCCTAGGAGTTACGGGGAGCAGCCGATCTCTCTTC |
| mm4_intergenic_Gm25266|Cradd_chr10_95136497 |
CCATGAAGTGGTGGTGTTTTCCTGTTTTAGTCACTAATATCCCCGGGTTGGGGGGGGGGCGGGGCGGGGAGGAGGATGCC TGTGGGAGCAGAAA |
| mm4_intergenic_Usp15|Usp15/AC158802.1_chr10_123196796 |
GACCTGTCCGCACCTGTCACCAGCCGGCGACACCAGCCCACCGCTCCCGCCCAGCTCTCCGCCAGCCTNNNNNNNNNNNN NNNNNNNNNACCCCGTTCCCTACCAGGTGTCCCCTTTCCGGAGCGAGGTTTTGA |
| mm2_exon_Peli1_chr11_21091606 |
CTGGTGCCTGCGTTCAACCGGTGCTNNNNNNNNNNNNNNNNNNNNNNTGTCCGTGCGGCGGGCCGAGCTGGCGTTCCGGC CACCAGCAGTCGTCCGGTGAG |
| mm4_exon_Drd4_chr7_141294210 |
TTTACTGGGCCACTTTCCGCGGCCTGCGGCGCTGGGAGGCAGCCCGGCACACCAAACTTCACANNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNTGTCGGACCCTACTCAGGGTCCCTTCTTCCCAGACTGC |
| mm4_exon_Fam211a_chr11_62648020 |
GACAGGTCAGCCTTCCTCACCCTAGCCTGAGGCCCCAAATTCAGCAGGAAACACAGAGGCACCTGCTGACACACCGCTCC ATCCCCGCGAAACGGGGACCCTGGGCGGTGCCTCCCGGCGCTCTCCTGTCACCC |
| mm4_exon_Prkcb_chr7_122289278 |
CTAGTCCCGCGCCTTTCCGGGCTTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTCTCGGGGCTCCCCCCAGTC CCCGCGCGCGCAAGATGGCTGACCCGG |
| mm4_intergenic_Evx2|Hoxd13_chr2_74667870 |
GGGTGGCTGCAAAGTCAACTCCTGGGTCTGGGGGAGGGCGGGGATGCGAGGTGGGCCTCCCAAAGGGCTGAAGAGGGGTG |
| mm4_intergenic_Eif4h|Limk1_chr5_134639368 |
GTCTCCGCTCCTTGAGGAACCAGCGGGCCAGCGAGGAAGGACCCCGCAATATAACTCCTCCTCCCCCCGCCCGCCCCGCT ACCGGGGCTGTCCGCCGCGCTGCCTGATCGCAAGTC |
| mm4_exon_4930515G01Rik/Ankrd13a_chr5_114774982 |
TCGGTTCGCGAGCTGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGGACTCGGAGGCCCTTG |