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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| mm0_exon_Pop5_chr5_115238083_F | Primer3: not found at this Tm | N.d. | 1.00 |
| mm0_exon_Pop5_chr5_115238083_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intergenic_Prc1|6330403N20Rik_chr7_80294746_F | Primer3: not found at this Tm | N.d. | 0.65 |
| mm4_intergenic_Prc1|6330403N20Rik_chr7_80294746_R | Primer3: not found at this Tm | N.d. | 0.65 |
| mm4_intergenic_Dnaja2|Neto2_chr8_85555324_F | Primer3: not found at this Tm | N.d. | 0.55 |
| mm4_intergenic_Dnaja2|Neto2_chr8_85555324_R | Primer3: not found at this Tm | N.d. | 0.55 |
| mm4_intron_Pafah1b2_chr9_45984532_F | TCGTCGGCAGCGTCCTGGCCAGGGTGGAACCAG | 62.5 | 0.39 |
| mm4_intron_Pafah1b2_chr9_45984532_R | GTCTCGTGGGCTCGGGTATTGTGAGGCCCGGCTC | 60.5 | 0.39 |
| mm4_exon_2410017I17Rik/Gm17782_chr17_36161918_F | TCGTCGGCAGCGTCCGACGTGGCTGGAGAAGG | 60.1 | 0.34 |
| mm4_exon_2410017I17Rik/Gm17782_chr17_36161918_R | GTCTCGTGGGCTCGGGAGGGAAAAGGCTTCTGGGG | 60.3 | 0.34 |
| mm4_intron_Psmd11_chr11_80428763_F | TCGTCGGCAGCGTCCGACATCCTCCACTCCATCG | 59.9 | 0.29 |
| mm4_intron_Psmd11_chr11_80428763_R | GTCTCGTGGGCTCGGTGAGTCAGCAGCACCATAGC | 60.1 | 0.29 |
| mm4_intergenic_Mir133a-2|Slco4a1_chr2_180430464_F | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intergenic_Mir133a-2|Slco4a1_chr2_180430464_R | Primer3: not found at this Tm | N.d. | 0.28 |
| mm4_intron_Mllt10_chr2_18065540_F | TCGTCGGCAGCGTCAAGTGTCATTAGGTGGCCGC | 60.6 | 0.26 |
| mm4_intron_Mllt10_chr2_18065540_R | GTCTCGTGGGCTCGGCCTCCGGTTCCCAAAGCC | 60.3 | 0.26 |
| mm3_intergenic_Atxn7l3|Ubtf_chr11_102296656_F | Primer3: not found at this Tm | N.d. | 0.25 |
| mm3_intergenic_Atxn7l3|Ubtf_chr11_102296656_R | Primer3: not found at this Tm | N.d. | 0.25 |
| mm4_exon_Brinp1_chr4_68954103_F | TCGTCGGCAGCGTCTTATTCGGCTCGGTGGGAAC | 60.1 | 0.22 |
| mm4_exon_Brinp1_chr4_68954103_R | GTCTCGTGGGCTCGGGTATGAGCCAGGCTGCTAGG | 59.9 | 0.22 |
| mm3_intron_Trim44_chr2_102400901_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm3_intron_Trim44_chr2_102400901_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Vapa|Txndc2_chr17_65613727_F | TCGTCGGCAGCGTCCCGCTGTCAATCTCCGTAGA | 59.2 | 0.19 |
| mm4_intergenic_Vapa|Txndc2_chr17_65613727_R | GTCTCGTGGGCTCGGCCCCAAGAACGACACCCC | 59.9 | 0.19 |
| mm3_exon_Prkar1b_chr5_139129690_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm3_exon_Prkar1b_chr5_139129690_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_n-R5s42|Fam19a5_chr15_87625193_F | TCGTCGGCAGCGTCGGCCCGAGACTTTCTGCTAA | 59.7 | 0.17 |
| mm4_intergenic_n-R5s42|Fam19a5_chr15_87625193_R | GTCTCGTGGGCTCGGGGGAGGCGATCTGTGTCTTT | 59.7 | 0.17 |
| mm4_intergenic_Gm15734|9330182L06Rik_chr5_9266084_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Gm15734|9330182L06Rik_chr5_9266084_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_exon_Anapc5_chr5_122821208_F | TCGTCGGCAGCGTCTGAAGTCCTGGCTCTTCGTG | 59.6 | 0.16 |
| mm4_exon_Anapc5_chr5_122821208_R | GTCTCGTGGGCTCGGACAGTCTTGGGCGGGTTAAG | 59.9 | 0.16 |
| mm4_exon_Ift57_chr16_49699392_F | TCGTCGGCAGCGTCCTTGGACGATGGGGTGTCTC | 60.1 | 0.15 |
| mm4_exon_Ift57_chr16_49699392_R | GTCTCGTGGGCTCGGAACATGTGGTAGGCCGCTC | 60.0 | 0.15 |
| mm4_exon_Raly/a_chr2_154791361_F | TCGTCGGCAGCGTCCTCGCGCCTCTGTCAGTG | 60.5 | 0.15 |
| mm4_exon_Raly/a_chr2_154791361_R | GTCTCGTGGGCTCGGGAGAGTCGCGACCGCTTC | 60.5 | 0.15 |
| mm3_intergenic_Gm9755|Nat3_chr8_67523121_F | TCGTCGGCAGCGTCAGCACGCAGATTCCAGACAA | 59.9 | 0.14 |
| mm3_intergenic_Gm9755|Nat3_chr8_67523121_R | GTCTCGTGGGCTCGGCTTTTGAGCTGTTTCCTCCCC | 59.1 | 0.14 |
| mm4_intron_Ephx4_chr5_107403456_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Ephx4_chr5_107403456_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Mapk15_chr15_75998990_F | TCGTCGGCAGCGTCACCCACCCACCTCCTTGAG | 60.8 | 0.14 |
| mm4_exon_Mapk15_chr15_75998990_R | GTCTCGTGGGCTCGGGAGGCAGAGGAGGGAGAAGA | 60.0 | 0.14 |
| mm4_intergenic_Gm12036|Aftph_chr11_20741041_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Gm12036|Aftph_chr11_20741041_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Zfp365_chr10_67912512_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Zfp365_chr10_67912512_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Arpc5_chr1_152766519_F | TCGTCGGCAGCGTCCCTCCTTCTCCAGCCCCG | 61.4 | 0.13 |
| mm4_exon_Arpc5_chr1_152766519_R | GTCTCGTGGGCTCGGTCTGCTTGCAGCCATCCTTC | 60.6 | 0.13 |
| mm4_intron_Heca_chr10_17947415_F | TCGTCGGCAGCGTCGAGCACTTCCTGACTCGCAT | 60.1 | 0.13 |
| mm4_intron_Heca_chr10_17947415_R | GTCTCGTGGGCTCGGCGGGAGACGCTAAGAATGGT | 59.5 | 0.13 |
| mm4_exon_Ccm2_chr11_6546972_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Ccm2_chr11_6546972_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm8935|Gm2464_chr3_13471604_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm8935|Gm2464_chr3_13471604_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Vegfb|Dnajc4_chr19_6987653_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Vegfb|Dnajc4_chr19_6987653_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_exon_Upp2_chr2_58567489_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_exon_Upp2_chr2_58567489_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Pde7a|Gm22282_chr3_19311444_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Pde7a|Gm22282_chr3_19311444_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_2410012M07Rik_chr9_98865018_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_2410012M07Rik_chr9_98865018_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_4732418A04Rik|Scmh1_chr4_120405120_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_4732418A04Rik|Scmh1_chr4_120405120_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Hgsnat_chr8_25976477_F | TCGTCGGCAGCGTCCGCGACGCTCAAGTCCTG | 61.1 | 0.10 |
| mm4_intron_Hgsnat_chr8_25976477_R | GTCTCGTGGGCTCGGCGGAGCCAGGTGAGCGAG | 62.5 | 0.10 |
| mm2_exon_Reps1_chr10_18055897_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm2_exon_Reps1_chr10_18055897_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm20204|Cmip_chr8_117256793_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Gm20204|Cmip_chr8_117256793_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Lrp5|1810055G02Rik_chr19_3686601_F | TCGTCGGCAGCGTCGGGAGGAGGGAGCGGAAG | 61.1 | 0.08 |
| mm4_intergenic_Lrp5|1810055G02Rik_chr19_3686601_R | GTCTCGTGGGCTCGGCTTGCCCGGCCTCTCCTG | 62.4 | 0.08 |
| mm4_exon_Hipk3_chr2_104494007_F | TCGTCGGCAGCGTCTGCCTGGCTTCCTTACCTTC | 59.6 | 0.08 |
| mm4_exon_Hipk3_chr2_104494007_R | GTCTCGTGGGCTCGGCCTGCTGAAGCGCTTGGC | 62.1 | 0.08 |
| mm3_intron_Wwp2_chr8_107504744_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intron_Wwp2_chr8_107504744_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Dscam_chr16_97170325_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Dscam_chr16_97170325_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Draxin|Mad2l2_chr4_148130701_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm3_intergenic_Draxin|Mad2l2_chr4_148130701_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Dlgap4/4930405A21Rik|Dlgap4_chr2_156720992_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Dlgap4/4930405A21Rik|Dlgap4_chr2_156720992_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Zfp61_chr7_24299088_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Zfp61_chr7_24299088_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Rragc/4930535I16Rik_chr4_123917648_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Rragc/4930535I16Rik_chr4_123917648_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ythdf2_chr4_132211293_F | TCGTCGGCAGCGTCCCGGCCGCTCATGAATTACT | 60.5 | 0.04 |
| mm4_intron_Ythdf2_chr4_132211293_R | GTCTCGTGGGCTCGGCCCGGGGAAAGGACCTTTC | 60.0 | 0.04 |
| mm3_intergenic_Chd6|Gm14243_chr2_161109343_F | TCGTCGGCAGCGTCCTAGATCTCCCCGCCTTGC | 59.6 | 0.03 |
| mm3_intergenic_Chd6|Gm14243_chr2_161109343_R | GTCTCGTGGGCTCGGGCTTGCAAAACAGAGCGCAG | 61.2 | 0.03 |
| mm4_intron_Zzz3_chr3_152396157_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Zzz3_chr3_152396157_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Gm13012|Ece1_chr4_137897855_F | TCGTCGGCAGCGTCGCCCTCAGTTTTCCCATCCC | 60.6 | 0.03 |
| mm4_intergenic_Gm13012|Ece1_chr4_137897855_R | GTCTCGTGGGCTCGGTGTCCCCATCCACAAATGCA | 59.8 | 0.03 |
| mm3_intron_Sctr_chr1_120007338_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm3_intron_Sctr_chr1_120007338_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_D030056L22Rik_chr19_18713288_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_D030056L22Rik_chr19_18713288_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Pigg|Gm10419_chr5_108367849_F | TCGTCGGCAGCGTCCTCTTCATCCTCCCGCGTC | 59.9 | 0.03 |
| mm4_intergenic_Pigg|Gm10419_chr5_108367849_R | GTCTCGTGGGCTCGGCGGCTTGATTCCCGGTGC | 61.5 | 0.03 |
| mm4_exon_Ncor1_chr11_62457193_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Ncor1_chr11_62457193_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Nup205_chr6_35177698_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Nup205_chr6_35177698_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Cryl1_chr14_57363345_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Cryl1_chr14_57363345_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Fam65a_chr8_105605464_F | TCGTCGGCAGCGTCTTTCCTAAGGCCGTGGCG | 60.0 | 0.02 |
| mm4_intron_Fam65a_chr8_105605464_R | GTCTCGTGGGCTCGGGAAAAGACACGGCGCGATC | 59.9 | 0.02 |
| mm4_intron_Setd3_chr12_108178828_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Setd3_chr12_108178828_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Nfix_chr8_84799971_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Nfix_chr8_84799971_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Eya1_chr1_14309816_F | TCGTCGGCAGCGTCCTCTCAGAGGCGCTGTGAC | 60.1 | 0.02 |
| mm4_exon_Eya1_chr1_14309816_R | GTCTCGTGGGCTCGGCTCAGTCGCTCCACAGCC | 60.1 | 0.02 |
| mm4_intron_Arid2_chr15_96288304_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Arid2_chr15_96288304_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Ppp2r3d_chr9_124422717_F | TCGTCGGCAGCGTCCCCACATACCTTGGCAACCA | 60.2 | 0.01 |
| mm4_exon_Ppp2r3d_chr9_124422717_R | GTCTCGTGGGCTCGGCTACTTCCCTTGCGGTCGAC | 60.4 | 0.01 |
| mm4_intron_Wnt3_chr11_103810234_F | TCGTCGGCAGCGTCGAACAAAGGCGGATTGAGCG | 60.1 | 0.01 |
| mm4_intron_Wnt3_chr11_103810234_R | GTCTCGTGGGCTCGGCCACGCTCAGTTCCCAGC | 60.7 | 0.01 |
| mm4_intergenic_4933405D12Rik|1810037I17Rik_chr3_122924315_F | TCGTCGGCAGCGTCCTAGAAAGGGAGGACGCCTG | 59.5 | 0.01 |
| mm4_intergenic_4933405D12Rik|1810037I17Rik_chr3_122924315_R | GTCTCGTGGGCTCGGCGCCCAGTCTAGCAACCAAT | 60.3 | 0.01 |
| mm4_intron_Hecw2_chr1_54194609_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Hecw2_chr1_54194609_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Chpt1_chr10_88503974_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Chpt1_chr10_88503974_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Unc5d|4933433F19Rik_chr8_29219546_F | TCGTCGGCAGCGTCGCAGCGGAACAGGGATATCA | 59.8 | 0.01 |
| mm4_intergenic_Unc5d|4933433F19Rik_chr8_29219546_R | GTCTCGTGGGCTCGGCAGGCTCGGTTTGGTAGTCC | 60.3 | 0.01 |
| mm4_exon_Rap2a_chr14_120478645_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Rap2a_chr14_120478645_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Prpf40a_chr2_53191094_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Prpf40a_chr2_53191094_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Atg5|Prdm1_chr10_44426219_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Atg5|Prdm1_chr10_44426219_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Hpn|Scn1b_chr7_31115306_F | TCGTCGGCAGCGTCCTCACCTGAGGAGGAGGGG | 60.3 | 0.01 |
| mm4_intergenic_Hpn|Scn1b_chr7_31115306_R | GTCTCGTGGGCTCGGGTAACTGAGCCTGCCTGGTC | 60.3 | 0.01 |
| mm4_exon_Cnp_chr11_100574910_F | TCGTCGGCAGCGTCTTTCTGCCAAGGCTCAGACC | 60.2 | 0.01 |
| mm4_exon_Cnp_chr11_100574910_R | GTCTCGTGGGCTCGGGTCCCTTTCATAGCCTGGGG | 59.8 | 0.01 |
| mm4_exon_Zer1_chr2_30124394_F | TCGTCGGCAGCGTCAGGAGGTCGGATCCGGTC | 60.1 | 0.01 |
| mm4_exon_Zer1_chr2_30124394_R | GTCTCGTGGGCTCGGCCGAGGGCAAGGGAACGG | 62.7 | 0.01 |
| mm4_exon_Necab2_chr8_119446957_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Necab2_chr8_119446957_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Nfe2l1|Copz2_chr11_96849842_F | TCGTCGGCAGCGTCGAGAGAGGACGCACACAGAG | 59.8 | 0.01 |
| mm4_intergenic_Nfe2l1|Copz2_chr11_96849842_R | GTCTCGTGGGCTCGGCTCGCTGCCTGCACTGAC | 61.1 | 0.01 |
| mm4_intergenic_Gm26885|Pim1/Gm26885_chr17_29490700_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm26885|Pim1/Gm26885_chr17_29490700_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm26652|Gm22783_chrX_19237887_F | TCGTCGGCAGCGTCTTCTGTTACTGGGTCCGCAC | 59.9 | 0.01 |
| mm4_intergenic_Gm26652|Gm22783_chrX_19237887_R | GTCTCGTGGGCTCGGTAGGCAGCTCAGAGCCAGT | 60.3 | 0.01 |
| mm4_exon_Sept9_chr11_117266365_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Sept9_chr11_117266365_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Cacna1a_chr8_84415305_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cacna1a_chr8_84415305_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ccdc105|Slc1a6_chr10_78780434_F | TCGTCGGCAGCGTCCGTCCCGGAGCTCCTGAG | 61.5 | 0.00 |
| mm4_intergenic_Ccdc105|Slc1a6_chr10_78780434_R | GTCTCGTGGGCTCGGAATCGGAGGAATGCAGGCTG | 60.4 | 0.00 |
| mm4_exon_Ube2q2_chr9_55149499_F | TCGTCGGCAGCGTCCATTTTCCAGCCGCGCTC | 59.8 | 0.00 |
| mm4_exon_Ube2q2_chr9_55149499_R | GTCTCGTGGGCTCGGGGAGGGGTGAGGAAAGGGA | 60.2 | 0.00 |
| mm4_exon_Nt5dc3_chr10_86779128_F | TCGTCGGCAGCGTCCACTGGCAGCTTAGAGGCAG | 60.7 | 0.00 |
| mm4_exon_Nt5dc3_chr10_86779128_R | GTCTCGTGGGCTCGGGAGCGCGGTCGTTCTCGA | 62.4 | 0.00 |
| mm4_exon_Cask_chrX_13846260_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Cask_chrX_13846260_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Akap9_chr5_3928557_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Akap9_chr5_3928557_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nr1d1|Msl1_chr11_98795433_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nr1d1|Msl1_chr11_98795433_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Brd4_chr17_32250539_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Brd4_chr17_32250539_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Foxg1/3110039M20Rik_chr12_49383779_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Foxg1/3110039M20Rik_chr12_49383779_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Rfxank/Nr2c2ap_chr8_70131299_F | TCGTCGGCAGCGTCCGAAGGGGAGGTGCCATAAA | 59.7 | 0.00 |
| mm4_exon_Rfxank/Nr2c2ap_chr8_70131299_R | GTCTCGTGGGCTCGGTTCTAAACCAACCGAGCCCC | 59.9 | 0.00 |
| mm4_intron_Rab31_chr17_65729983_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Rab31_chr17_65729983_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Zfp532_chr18_65581233_F | TCGTCGGCAGCGTCCATTTGGGCCCCTCGTGC | 61.4 | 0.00 |
| mm4_intron_Zfp532_chr18_65581233_R | GTCTCGTGGGCTCGGCAAAGCCAGGGTGGGACAG | 60.6 | 0.00 |
| mm4_intron_Vkorc1l1_chr5_129942406_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Vkorc1l1_chr5_129942406_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ttll11_chr2_35885012_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ttll11_chr2_35885012_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Thumpd2_chr17_81036170_F | TCGTCGGCAGCGTCGTGGCAGAAGTCTTGGGAGG | 60.3 | 0.00 |
| mm4_intron_Thumpd2_chr17_81036170_R | GTCTCGTGGGCTCGGCTGTTTGCTTTCTCCACGGC | 60.0 | 0.00 |
| mm4_intron_Tcn2_chr11_3931845_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tcn2_chr11_3931845_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Sh3bp4_chr1_89070773_F | TCGTCGGCAGCGTCTTCCCTGCCCTCTGTGGT | 60.1 | 0.00 |
| mm4_intron_Sh3bp4_chr1_89070773_R | GTCTCGTGGGCTCGGCGCTCTCTTCGCTCCTTCTC | 60.2 | 0.00 |
| mm4_intron_Ocln_chr13_100552302_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ocln_chr13_100552302_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Klc2_chr19_5118041_F | TCGTCGGCAGCGTCAGAAAAGGCCGGATTCCCAG | 60.0 | 0.00 |
| mm4_intron_Klc2_chr19_5118041_R | GTCTCGTGGGCTCGGTAGAGGAGGAGTCGTCGTGG | 60.1 | 0.00 |
| mm4_intron_Hivep3_chr4_120032760_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Hivep3_chr4_120032760_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm13589_chr2_38424493_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Gm13589_chr2_38424493_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Clic4_chr4_135272437_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Clic4_chr4_135272437_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Chd5_chr4_152339057_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Chd5_chr4_152339057_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Adam18_chr8_24653182_F | TCGTCGGCAGCGTCTATGGGGTGTGACACAAGGC | 59.9 | 0.00 |
| mm4_intron_Adam18_chr8_24653182_R | GTCTCGTGGGCTCGGCTCTGTGGGTTGATGCACCT | 59.9 | 0.00 |
| mm4_intergenic_Pdgfc|Gm22531_chr3_81627977_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pdgfc|Gm22531_chr3_81627977_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Hes1|n-R5s32_chr16_30070396_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Hes1|n-R5s32_chr16_30070396_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5229|Crim1_chr17_78200144_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm5229|Crim1_chr17_78200144_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26691|Cxxc4_chr3_134202870_F | TCGTCGGCAGCGTCTGCTTGGTCTGTCAGCAGTT | 59.8 | 0.00 |
| mm4_intergenic_Gm26691|Cxxc4_chr3_134202870_R | GTCTCGTGGGCTCGGTGCAGAGGAGTAAGGGGAGG | 60.3 | 0.00 |
| mm4_intergenic_Gm24269|Tdgf1_chr9_110932021_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24269|Tdgf1_chr9_110932021_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23822|4921504A21Rik_chr5_19024882_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm23822|4921504A21Rik_chr5_19024882_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm15563|Usp3_chr9_66592613_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm15563|Usp3_chr9_66592613_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Coq3|Faxc_chr4_21931233_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Coq3|Faxc_chr4_21931233_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ccny|Gm22765_chr18_9450165_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ccny|Gm22765_chr18_9450165_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_BC052040|Meis2_chr2_115859178_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_BC052040|Meis2_chr2_115859178_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_9930021J03Rik|Ranbp6_chr19_29806213_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_9930021J03Rik|Ranbp6_chr19_29806213_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_4930595D18Rik|Traf3_chr12_111166132_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_4930595D18Rik|Traf3_chr12_111166132_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Zbtb9/Ggnbp1_chr17_26973258_F | TCGTCGGCAGCGTCGGTTGAGGTGCTCCGACG | 60.4 | 0.00 |
| mm4_exon_Zbtb9/Ggnbp1_chr17_26973258_R | GTCTCGTGGGCTCGGCTCCTCACCGTGCTCGCTC | 62.6 | 0.00 |
| mm4_exon_Zbtb14_chr17_69383927_F | TCGTCGGCAGCGTCGCGGGCCAAGGAAGAGAG | 60.1 | 0.00 |
| mm4_exon_Zbtb14_chr17_69383927_R | GTCTCGTGGGCTCGGCACCTTCCCTTCCACCATCC | 60.0 | 0.00 |
| mm4_exon_Smad6_chr9_64020814_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Smad6_chr9_64020814_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Mpped2_chr2_106693596_F | TCGTCGGCAGCGTCTCTCTTCCCAGATCGAGGCT | 59.7 | 0.00 |
| mm4_exon_Mpped2_chr2_106693596_R | GTCTCGTGGGCTCGGAGAACCTTCGACCCCGGAG | 60.9 | 0.00 |
| mm4_exon_Map4k3_chr17_80728041_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Map4k3_chr17_80728041_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Grin2c_chr11_115267155_F | TCGTCGGCAGCGTCGACCAGTACGGGTAGCGC | 59.8 | 0.00 |
| mm4_exon_Grin2c_chr11_115267155_R | GTCTCGTGGGCTCGGCATCTCAGTCGGCTGGTGAG | 60.1 | 0.00 |
| mm4_exon_Gm10657/Cd276_chr9_58555038_F | TCGTCGGCAGCGTCACAAAGGTGGACCCAGCAG | 59.8 | 0.00 |
| mm4_exon_Gm10657/Cd276_chr9_58555038_R | GTCTCGTGGGCTCGGCAACAGTGGCGGCGATTG | 59.8 | 0.00 |
| mm4_exon_Astn2_chr4_66404541_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Astn2_chr4_66404541_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_4833418N17Rik/Bnc1_chr7_81992395_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_4833418N17Rik/Bnc1_chr7_81992395_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm2_intron_Mdm1_chr10_118141983_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm2_intron_Mdm1_chr10_118141983_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_intron_Pafah1b2_chr9_45984532 |
CTGGCCAGGGTGGAACCAGGGCGCCGCAGGGCAGCGGCGACGGCGCGGGGCCCCGGAGGCCCTGCAGGGCGACANNNNNN NNNNNNNNNNNNNNNNNNNNNNNTGGGGGAGGGGAGCCGGGCCTCACAATAC |
| mm4_exon_2410017I17Rik/Gm17782_chr17_36161918 |
CGACGTGGCTGGAGAAGGGGCGGAGGGTCGGGTGGGCGGCGCGGGGACCGGGCTTCCCCTGTGCAGTCCCCGACCCGCCC ATGCCCCCAGAAGCCTTTTCCCTC |
| mm4_intron_Psmd11_chr11_80428763 |
CGACATCCTCCACTCCATCGGTAAAGGGCCTGGCGCCGTCCCCGCGGCTCCGCCGTCCCGGCGCGGCCTGTGTGGGTCGG AGGCGGCGGAGAGGGGCCGGGCTAGCCGGCTATGGTGCTGCTGACTCA |
| mm4_intron_Mllt10_chr2_18065540 |
AAGTGTCATTAGGTGGCCGCCGGCGTCGGGCCGCGTCCTGCGCAGGGTAGGGTGGGAGCGCGAGACCCGCGCTGGAGTCA CGGTGACGGCGCGTGGTGGCTTTGGGAACCGGAGG |
| mm4_exon_Brinp1_chr4_68954103 |
TTATTCGGCTCGGTGGGAACTTGGAAGAGCCCTGCGTCCAGCTCGCATACCGGGGACGGCGCGGGGACTGCAGGCGTGGG GGTACCTGGCTCCTAGCAGCCTGGCTCATAC |
| mm4_intergenic_Vapa|Txndc2_chr17_65613727 |
CCGCTGTCAATCTCCGTAGAGCAGGGTCGGGGGGGCGGAGCGGGGCTCTTTGCGGGGAGACGCGGTGCACGGCGCCCCGG GAAGGGGGTGTCGTTCTTGGGG |
| mm4_intergenic_n-R5s42|Fam19a5_chr15_87625193 |
GGCCCGAGACTTTCTGCTAACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG CCCAAAAGACACAGATCGCCTCCC |
| mm4_exon_Anapc5_chr5_122821208 |
TGAAGTCCTGGCTCTTCGTGGACGCCGGCAAGGACAGGCCCTCTCCAGGCCTGCCACGCGCCGCGCCCACGAGCCGCCTT TACGCCATGGCTGCAGCCGCCCGGCACCTTAACCCGCCCAAGACTGT |
| mm4_exon_Ift57_chr16_49699392 |
CTTGGACGATGGGGTGTCTCGGGCTCGCGGGGAAGGCGCAGGGGAGGCTGTGGTGGAGCGCGGGCCAGGAGCGGCCTACC ACATGTT |
| mm4_exon_Raly/a_chr2_154791361 |
CTCGCGCCTCTGTCAGTGCGGCGGGGCGCGCGAGCGGCGCGGGGTGCGGAGCCGAGGGAAGCCGAGGGGGCGGAAGCGGT CGCGACTCTC |
| mm3_intergenic_Gm9755|Nat3_chr8_67523121 |
AGCACGCAGATTCCAGACAACTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNGTGGGGGAGGAAACAGCTCAAAAG |
| mm4_exon_Mapk15_chr15_75998990 | ACCCACCCACCTCCTTGAGGCAACCCGGCGCCGTCCCCCAGACCCCAATGCATCTTCTCCCTCCTCTGCCTC |
| mm4_exon_Arpc5_chr1_152766519 |
CCTCCTTCTCCAGCCCCGCCCCTTTCCTGCAGCGGGCCCGCGCGTGCGCGGTGCGTCCCGCGCGCTCCCCTGCCGACGCG CGCTCCCGGGGGACGCGGGGGCGGAGCGGGGGCTGAAGGATGGCTGCAAGCAGA |
| mm4_intron_Heca_chr10_17947415 |
GAGCACTTCCTGACTCGCATTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTG AGGAAGTTGGCGCTCGCCCCGCCGCTGTCGTCTTACCATTCTTAGCGTCTCCCG |
| mm4_intron_Hgsnat_chr8_25976477 |
CGCGACGCTCAAGTCCTGCGCCCCGCGGGCCGTGGGGAGGTCCGGGGCAGGCCCACGCACGGTCCCCGCTACCCCTAGCC GTGGGGGCCGCTCGCTCACCTGGCTCCG |
| mm4_intergenic_Lrp5|1810055G02Rik_chr19_3686601 |
GGGAGGAGGGAGCGGAAGCCGAGCCGGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNAGGCGGGTCTCTCCGGGCCCGCGACAGGAGAGGCCGGGCAAG |
| mm4_exon_Hipk3_chr2_104494007 |
TGCCTGGCTTCCTTACCTTCCTAGAGGCCCGCGCTCTCCCCGCTTCGGGCGGCCGCAGCCCTGAGCATGTCCGGGGTGGG TCGCGGGGGCCGTGCGGGGACCCGGAGCCAAGCGCTTCAGCAGG |
| mm4_intron_Ythdf2_chr4_132211293 |
CCGGCCGCTCATGAATTACTCGTTGTTAACGAAAAAAGCTGCCCGCCAGCTGCAGGGCCACACCAAAAGGGGCGACCGCC CCGCGCGCGGCACCTGCGACCCGAGCGGCTTCGGAAAGGTCCTTTCCCCGGG |
| mm3_intergenic_Chd6|Gm14243_chr2_161109343 |
CTAGATCTCCCCGCCTTGCAGACAGCGCAGCTCCCGGCCCGCCCCCCCGGAATGAAGCGGCCGGGCCGCGNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGCTCTGTTTTGCAAGC |
| mm4_intergenic_Gm13012|Ece1_chr4_137897855 |
GCCCTCAGTTTTCCCATCCCAATCTCAAACATCTTTTCTCTTGTTATCGCTAATTCCAGAGAAGGTTGTCCCCCCGCCAT CCCCCCGCCCCGTGACAATAACGGGTGCTTTTGCATTTGTGGATGGGGACA |
| mm4_intergenic_Pigg|Gm10419_chr5_108367849 |
CTCTTCATCCTCCCGCGTCCTCCCGGGCTCGCGCCGCTGTCACTGGAGCCCGCATCCTCCGCCTCCCGCCGCCGCCGCGA CCCCGCACCGGGAATCAAGCCG |
| mm4_intron_Fam65a_chr8_105605464 |
TTTCCTAAGGCCGTGGCGGGGAGAAGGGGCGAGCTGTGGATCCCGTGCGTCCTGCACCCGCGCCGCCCATCGGCTCCCGG ACTTGCGACCGGGTCCCGCCTCACCCCGTTCTCGCGACCCGGATCGCGCCGTGTCTTTTC |
| mm4_exon_Eya1_chr1_14309816 |
CTCTCAGAGGCGCTGTGACGCGGCTGGCAGCGGAGCGCAGAGGCCGGGGATTGCCCGGCTCCCGGGGACTGCGCCCGGGC GCTGCTGCAGGCTCGGGCTGTGGAGCGACTGAG |
| mm4_exon_Ppp2r3d_chr9_124422717 |
CCCACATACCTTGGCAACCACGGCCATGTCGCCCAGACCCGCCCTCCCACGAGGCAGCCCCTCGAACGCGCACTCCACGA GGGCGATGGCATCCTCCGTGTCCTGGGGACGGGGCGGGGGTCGACCGCAAGGGAAGTAG |
| mm4_intron_Wnt3_chr11_103810234 |
GAACAAAGGCGGATTGAGCGGCGCAGCGGGTCCCGCCGGACGGGGACCGGCACAGCGGGGCTGGCAGCGCCGCTCCCAGG CTAATCCCCGCCCCGCCCCCGCCACCCCCACTGCCCCGGCGCTGGGAACTGAGCGTGG |
| mm4_intergenic_4933405D12Rik|1810037I17Rik_chr3_122924315 |
CTAGAAAGGGAGGACGCCTGCGCAGTCCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGC CTAGTCGATTGGCGGGGTTACCCGGAATTGGTTGCTAGACTGGGCG |
| mm4_intergenic_Unc5d|4933433F19Rik_chr8_29219546 |
GCAGCGGAACAGGGATATCAGATGGGCAGCGGGACGCAGCGCGCGCCCCCATCGCCTCCTGCGGCGCCGCCCGCCGTCCC CGCTAAGCGGCCCGCAGCCCCAGCTCCGCTCCGGGTCCGGGACTACCAAACCGAGCCTG |
| mm4_intergenic_Hpn|Scn1b_chr7_31115306 |
CTCACCTGAGGAGGAGGGGGCTGGGTGGGAGGCGGGGACGGGGCGGGGAAGGGCGGACCCCAGGACAGGCTGCCACAGAG GCCACCTGGCTCATGGGGCGGGGCCCGCAGGGGTTGGACCAGGCAGGCTCAGTTAC |
| mm4_exon_Cnp_chr11_100574910 |
TTTCTGCCAAGGCTCAGACCGCTGCTTCCTGGCACTCAGGTTTCCATTCCCCGGGGGCGCGTGCGCAGAGGCTCGGGCTG ACCCCGCCCTGTCCGCGCGCCCCGCCCCCAGGCTATGAAAGGGAC |
| mm4_exon_Zer1_chr2_30124394 |
AGGAGGTCGGATCCGGTCCGGGTCCGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCTGCGACCGGAGCCCCGGAC GGAGGCCGTTCCCTTGCCCTCGG |
| mm4_intergenic_Nfe2l1|Copz2_chr11_96849842 |
GAGAGAGGACGCACACAGAGGCCAGCCACGCAGGACTGGGCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTGTCAGTGCAGGCAGCGAG |
| mm4_intergenic_Gm26652|Gm22783_chrX_19237887 |
TTCTGTTACTGGGTCCGCACTCGCCCAACCCGAGCCTTCATCCCCGCCCCTTTCCCGCCACCCGCGCAGCACTGTTCTGC GCTNNNNNNNNNNNNNNNNNNNNNNNNATCGCTGCGGGGACTGGCTCTGAGCTGCCTA |
| mm4_intergenic_Ccdc105|Slc1a6_chr10_78780434 |
CGTCCCGGAGCTCCTGAGCAGCTGCGGCAGGGGGACATCCCCGAGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNACCCACGTGAGCTCAAGGCCAGCCTGCATTCCTCCGATT |
| mm4_exon_Ube2q2_chr9_55149499 |
CATTTTCCAGCCGCGCTCGGACGCGGGTCGCGGCGGCGGGGAGAGGCGGAGCCGCGAGANNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTTCCTCACCCCTCC |
| mm4_exon_Nt5dc3_chr10_86779128 |
CACTGGCAGCTTAGAGGCAGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNTCGAGAACGACCGCGCTC |
| mm4_exon_Rfxank/Nr2c2ap_chr8_70131299 |
CGAAGGGGAGGTGCCATAAACCCCGCCCCGGCCCCGCGAACGGAACAGTGTCTGTGTAGCACTGCGCGTGCGCTATCCGC ACGCGGTTCCGGGTTCGTAGATCTGCAGAGCCGCTGGGGCTCGGTTGGTTTAGAA |
| mm4_intron_Zfp532_chr18_65581233 |
CATTTGGGCCCCTCGTGCCACCCCGCGGGTCACGGCGAGCGCGCGAGGCTCAGGCCCCTTGCCTTGGCCTGAGTGCGGCG GCCTGTCCCACCCTGGCTTTG |
| mm4_intron_Thumpd2_chr17_81036170 |
GTGGCAGAAGTCTTGGGAGGGGTGCGGGGCGCGGGGTGGGGGCGAGGAGTCTGTCTGCCCTCCCTCAGGTATGCAGGGTG CCGTGGAGAAAGCAAACAG |
| mm4_intron_Sh3bp4_chr1_89070773 |
TTCCCTGCCCTCTGTGGTCACAGCCCGACCTGGGCTGCGGATCGTGGTCGCTANNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTTCTGAGAAGGAGCGAAGAGAGCG |
| mm4_intron_Klc2_chr19_5118041 |
AGAAAAGGCCGGATTCCCAGCCCCAGCCCGGGACCGCGCCCCCTCCCCGCGGGCCGGTCGGGTCCTCCCACAGGCCGCGC CCACGACCACGACGACTCCTCCTCTA |
| mm4_intron_Adam18_chr8_24653182 |
TATGGGGTGTGACACAAGGCCCTGCCTCAGGCTGAGATCCTCGCCCCCTCCCCCCGCCCCGACACCCACCTTCCTAGGAT GATACTCACTTCCCTTCCAGGTGCATCAACCCACAGAG |
| mm4_intergenic_Gm26691|Cxxc4_chr3_134202870 |
TGCTTGGTCTGTCAGCAGTTGGAAAGGGAGACCAGGTTTTTAAAGTGATTCCTCCCTCCCTGCCCCCCCCCCTCCCCGCA ACCCGATGGTGTGCAGTTCCTTCAAACAACCCTCCCCTTACTCCTCTGCA |
| mm4_exon_Zbtb9/Ggnbp1_chr17_26973258 |
GGTTGAGGTGCTCCGACGCGGTCGCGCGTGCGGTGGGGGCGTGTCGGTGGGACGTCGCGGGGCCGGAGCTCACTGAGCCG GCCGGAGCGAGCACGGTGAGGAG |
| mm4_exon_Zbtb14_chr17_69383927 | GCGGGCCAAGGAAGAGAGCCTCGCGCCCGCGCCGCGACCTGGAGAAGTGGAGGATGGTGGAAGGGAAGGTG |
| mm4_exon_Mpped2_chr2_106693596 |
TCTCTTCCCAGATCGAGGCTGCTCCGGTCCTCTCCACCTCCCCACGCAGCGACCCCGCGTCCCGCTCGCACCGCGCCCCT GTGCTGCCCTCCCAGGCCCTGGATCGGCGGCGGGGACCTCCGGGGTCGAAGGTTCT |
| mm4_exon_Grin2c_chr11_115267155 |
GACCAGTACGGGTAGCGCGGCCTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTCCCGGGC TGCGCAAAGGCGCGCCTCCCGCTCTCGGGGCTCACCAGCCGACTGAGATG |
| mm4_exon_Gm10657/Cd276_chr9_58555038 |
ACAAAGGTGGACCCAGCAGCCCACGCCGCCCCGCGCCACGCAAGCACTCACCGCGCCGCGCCGACTCCCGGGACTCGGGG ACGCGGCGGGGCGCAGCCCAATCGCCGCCACTGTTG |