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The following table lists possible deletions.
Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-".
Sequences are ranked by micro-homology score. This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.
mh- Score | Sequence | Effect |
---|---|---|
GCCTAGTGCCGCCTTCCTCCCGCATCCGGCGCGGACGCCATGGTGCGGTTCAAGCACGGGTAAGCAGCGCTGTCCCCGCG | (Wild-type sequence) | |
397 | GCCTTCCTCCCGCATCCGGCGCGG--------------TTCAAGCACGGGTAAGCAGCGC | 14 bp deleted → frameshift |
269 | GCCTTCCTCCCGCATCCGGCG----------------GTTCAAGCACGGGTAAGCAGCGC | 16 bp deleted → frameshift |
268 | GCCTTCCTCCCGCATCCGGCGCGGACGC--------GGTTCAAGCACGGGTAAGCAGCGC | 8 bp deleted → frameshift |
255 | GCCTTCCTCCCGCATCCGGCGCGG---------TGCGGTTCAAGCACGGGTAAGCAGCGC | 9 bp deleted → no frameshift |
242 | GCCTTCCTCCCGCATCCGGCGCGGACG----------GTTCAAGCACGGGTAAGCAGCGC | 10 bp deleted → frameshift |
232 | GCCTTCCTCCCGCATCCGG-------------------TTCAAGCACGGGTAAGCAGCGC | 19 bp deleted → frameshift |
198 | GCCTTCCTCCCGCATCCGG--------------TGCGGTTCAAGCACGGGTAAGCAGCGC | 14 bp deleted → frameshift |
175 | GCCTTCCTCCCGCATCCGGCGCGGACG---------------------GGTAAGCAGCGC | 21 bp deleted → no frameshift |
172 | GCCTTCCTCCCGCATCCGGCGCGG-------------------------GTAAGCAGCGC | 25 bp deleted → frameshift |
170 | GCCTTCCTCCCGCATCCGGCGCGGACGC-----------------ACGGGTAAGCAGCGC | 17 bp deleted → frameshift |
164 | GCCTTCCTCCCGCATCCGGCGCGGACGCCA------------AGCACGGGTAAGCAGCGC | 12 bp deleted → no frameshift |
134 | GCCTTCCTCCCGCATCCGGCGCGGACGCCA----------------CGGGTAAGCAGCGC | 16 bp deleted → frameshift |
133 | GCCTTCCTCCCGCATCCGG------------------------------GTAAGCAGCGC | 30 bp deleted → no frameshift |
126 | GCCTTCCTCCCGCATCCGGCGC-----------------------ACGGGTAAGCAGCGC | 23 bp deleted → frameshift |
126 | GCCTTCCTCCCGC-----------------------GGTTCAAGCACGGGTAAGCAGCGC | 23 bp deleted → frameshift |
121 | GCCTTCCTCCCGCATCCGGCGCGGACGC-------------------------------- | 32 bp deleted → frameshift |
120 | GCCTTCCTCCCGCATCCGGCGC-------------------------------------- | 38 bp deleted → frameshift |
114 | GCCTTCCTCCCGCATCCGGC-------------------------ACGGGTAAGCAGCGC | 25 bp deleted → frameshift |
114 | GCCTTCCTCCCG-------------------------GTTCAAGCACGGGTAAGCAGCGC | 25 bp deleted → frameshift |
109 | GCCTTCCTCCCGCATCCGGCGCGG--------------------------TAAGCAGCGC | 26 bp deleted → frameshift |
103 | GCCTTCCTCCCGCATCCGGCGCGGACGC---------------------------AGCGC | 27 bp deleted → no frameshift |
103 | GCCTTCCTCCCGCATCCGGCG---------------------------GGTAAGCAGCGC | 27 bp deleted → no frameshift |
101 | GCCTTCCTCCCGCA--------------------------------CGGGTAAGCAGCGC | 32 bp deleted → frameshift |
99 | GCCTTCCTCCCGCATCCGGCGCG------------------------------------C | 36 bp deleted → no frameshift |
89 | GCCTTCCTCCCGCATCCGGCGCGGACGC------------------------------GC | 30 bp deleted → no frameshift |
86 | GCCTTCCTCCCGCATC-------------------------AAGCACGGGTAAGCAGCGC | 25 bp deleted → frameshift |
84 | GCCTTCCTCCCGCATCCGG-------------------------------TAAGCAGCGC | 31 bp deleted → frameshift |
81 | GCCTTCCTCCCGCATCCGGCGCGGACGCCA--------------------------GCGC | 26 bp deleted → frameshift |
76 | GCCTTCCTCCCGCATCCGGCGC---------------------------------AGCGC | 33 bp deleted → no frameshift |
74 | GCCTTCCTCCCGCA----------------------------AGCACGGGTAAGCAGCGC | 28 bp deleted → frameshift |
73 | GC----------------------------------GGTTCAAGCACGGGTAAGCAGCGC | 34 bp deleted → frameshift |
69 | GCCTTCCTCCCGCATCCGGC-----------------------------------AGCGC | 35 bp deleted → frameshift |
69 | GCCTTC-----------------------------------AAGCACGGGTAAGCAGCGC | 35 bp deleted → frameshift |
66 | GCCTTCCTCCCG------------------------------------GGTAAGCAGCGC | 36 bp deleted → no frameshift |
61 | GCCTTCCTCCCGCA------------------------------------------GCGC | 42 bp deleted → no frameshift |
60 | GCCTTCCTC--------------------------------AAGCACGGGTAAGCAGCGC | 32 bp deleted → frameshift |
57 | GCCTTCCTCCCGC----------------------------------------------- | 47 bp deleted → frameshift |
54 | GCCTTCCTCCCGCATCCGGC---------------------------------------- | 40 bp deleted → frameshift |
51 | GCCTTCCTCCCGCATCCG-----------------------------------------C | 41 bp deleted → frameshift |
46 | GC-------------------------------------------ACGGGTAAGCAGCGC | 43 bp deleted → frameshift |
42 | GCCTTCCTCCCGC---------------------------------------------GC | 45 bp deleted → no frameshift |
28 | GC-----------------------------------------------------AGCGC | 53 bp deleted → frameshift |
24 | GC--------------------------------------------------------GC | 56 bp deleted → frameshift |
22 | GC---------------------------------------------------------- | 58 bp deleted → frameshift |