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DNA break repair outcome predictions

Guide: CGCATCCGGCGCGGACGCCA TGG

The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-".
Sequences are ranked by micro-homology score. This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.

mh- Score Sequence Effect
GCCTAGTGCCGCCTTCCTCCCGCATCCGGCGCGGACGCCATGGTGCGGTTCAAGCACGGGTAAGCAGCGCTGTCCCCGCG (Wild-type sequence)
397 GCCTTCCTCCCGCATCCGGCGCGG--------------TTCAAGCACGGGTAAGCAGCGC 14 bp deleted → frameshift
269 GCCTTCCTCCCGCATCCGGCG----------------GTTCAAGCACGGGTAAGCAGCGC 16 bp deleted → frameshift
268 GCCTTCCTCCCGCATCCGGCGCGGACGC--------GGTTCAAGCACGGGTAAGCAGCGC 8 bp deleted → frameshift
255 GCCTTCCTCCCGCATCCGGCGCGG---------TGCGGTTCAAGCACGGGTAAGCAGCGC 9 bp deleted → no frameshift
242 GCCTTCCTCCCGCATCCGGCGCGGACG----------GTTCAAGCACGGGTAAGCAGCGC 10 bp deleted → frameshift
232 GCCTTCCTCCCGCATCCGG-------------------TTCAAGCACGGGTAAGCAGCGC 19 bp deleted → frameshift
198 GCCTTCCTCCCGCATCCGG--------------TGCGGTTCAAGCACGGGTAAGCAGCGC 14 bp deleted → frameshift
175 GCCTTCCTCCCGCATCCGGCGCGGACG---------------------GGTAAGCAGCGC 21 bp deleted → no frameshift
172 GCCTTCCTCCCGCATCCGGCGCGG-------------------------GTAAGCAGCGC 25 bp deleted → frameshift
170 GCCTTCCTCCCGCATCCGGCGCGGACGC-----------------ACGGGTAAGCAGCGC 17 bp deleted → frameshift
164 GCCTTCCTCCCGCATCCGGCGCGGACGCCA------------AGCACGGGTAAGCAGCGC 12 bp deleted → no frameshift
134 GCCTTCCTCCCGCATCCGGCGCGGACGCCA----------------CGGGTAAGCAGCGC 16 bp deleted → frameshift
133 GCCTTCCTCCCGCATCCGG------------------------------GTAAGCAGCGC 30 bp deleted → no frameshift
126 GCCTTCCTCCCGCATCCGGCGC-----------------------ACGGGTAAGCAGCGC 23 bp deleted → frameshift
126 GCCTTCCTCCCGC-----------------------GGTTCAAGCACGGGTAAGCAGCGC 23 bp deleted → frameshift
121 GCCTTCCTCCCGCATCCGGCGCGGACGC-------------------------------- 32 bp deleted → frameshift
120 GCCTTCCTCCCGCATCCGGCGC-------------------------------------- 38 bp deleted → frameshift
114 GCCTTCCTCCCGCATCCGGC-------------------------ACGGGTAAGCAGCGC 25 bp deleted → frameshift
114 GCCTTCCTCCCG-------------------------GTTCAAGCACGGGTAAGCAGCGC 25 bp deleted → frameshift
109 GCCTTCCTCCCGCATCCGGCGCGG--------------------------TAAGCAGCGC 26 bp deleted → frameshift
103 GCCTTCCTCCCGCATCCGGCGCGGACGC---------------------------AGCGC 27 bp deleted → no frameshift
103 GCCTTCCTCCCGCATCCGGCG---------------------------GGTAAGCAGCGC 27 bp deleted → no frameshift
101 GCCTTCCTCCCGCA--------------------------------CGGGTAAGCAGCGC 32 bp deleted → frameshift
99 GCCTTCCTCCCGCATCCGGCGCG------------------------------------C 36 bp deleted → no frameshift
89 GCCTTCCTCCCGCATCCGGCGCGGACGC------------------------------GC 30 bp deleted → no frameshift
86 GCCTTCCTCCCGCATC-------------------------AAGCACGGGTAAGCAGCGC 25 bp deleted → frameshift
84 GCCTTCCTCCCGCATCCGG-------------------------------TAAGCAGCGC 31 bp deleted → frameshift
81 GCCTTCCTCCCGCATCCGGCGCGGACGCCA--------------------------GCGC 26 bp deleted → frameshift
76 GCCTTCCTCCCGCATCCGGCGC---------------------------------AGCGC 33 bp deleted → no frameshift
74 GCCTTCCTCCCGCA----------------------------AGCACGGGTAAGCAGCGC 28 bp deleted → frameshift
73 GC----------------------------------GGTTCAAGCACGGGTAAGCAGCGC 34 bp deleted → frameshift
69 GCCTTCCTCCCGCATCCGGC-----------------------------------AGCGC 35 bp deleted → frameshift
69 GCCTTC-----------------------------------AAGCACGGGTAAGCAGCGC 35 bp deleted → frameshift
66 GCCTTCCTCCCG------------------------------------GGTAAGCAGCGC 36 bp deleted → no frameshift
61 GCCTTCCTCCCGCA------------------------------------------GCGC 42 bp deleted → no frameshift
60 GCCTTCCTC--------------------------------AAGCACGGGTAAGCAGCGC 32 bp deleted → frameshift
57 GCCTTCCTCCCGC----------------------------------------------- 47 bp deleted → frameshift
54 GCCTTCCTCCCGCATCCGGC---------------------------------------- 40 bp deleted → frameshift
51 GCCTTCCTCCCGCATCCG-----------------------------------------C 41 bp deleted → frameshift
46 GC-------------------------------------------ACGGGTAAGCAGCGC 43 bp deleted → frameshift
42 GCCTTCCTCCCGC---------------------------------------------GC 45 bp deleted → no frameshift
28 GC-----------------------------------------------------AGCGC 53 bp deleted → frameshift
24 GC--------------------------------------------------------GC 56 bp deleted → frameshift
22 GC---------------------------------------------------------- 58 bp deleted → frameshift
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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.