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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| mm0_exon_Pop5_chr5_115238016_F | TCGTCGGCAGCGTCGAGCGTGGAGATTGACAGGG | 60.4 | 1.00 |
| mm0_exon_Pop5_chr5_115238016_R | GTCTCGTGGGCTCGGTTACCTGTGCTTGAACCGCA | 60.1 | 1.00 |
| mm3_intron_Rhd_chr4_134870564_F | Primer3: not found at this Tm | N.d. | 0.73 |
| mm3_intron_Rhd_chr4_134870564_R | Primer3: not found at this Tm | N.d. | 0.73 |
| mm4_intron_Loxhd1_chr18_77372676_F | Primer3: not found at this Tm | N.d. | 0.56 |
| mm4_intron_Loxhd1_chr18_77372676_R | Primer3: not found at this Tm | N.d. | 0.56 |
| mm4_intergenic_Diap2|Gm14984_chrX_130389024_F | TCGTCGGCAGCGTCGCAACCCTACCTGTGCTCTC | 60.3 | 0.50 |
| mm4_intergenic_Diap2|Gm14984_chrX_130389024_R | GTCTCGTGGGCTCGGGTTCACACAACTAAGCCATGGT | 59.1 | 0.50 |
| mm4_exon_B4galnt1_chr10_127165403_F | TCGTCGGCAGCGTCGTCTACAAAGCCCCGGAGTC | 60.1 | 0.25 |
| mm4_exon_B4galnt1_chr10_127165403_R | GTCTCGTGGGCTCGGCCTCATGAGGCCGGCGAC | 62.8 | 0.25 |
| mm4_exon_Brix1_chr15_10475663_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_exon_Brix1_chr15_10475663_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Zfp217|Gm17619_chr2_170187516_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Zfp217|Gm17619_chr2_170187516_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_exon_Neat1/NEAT1_3/NEAT1_2/NEAT1_1_chr19_5839836_F | TCGTCGGCAGCGTCGGAAACCAACAGCTGAAGGC | 59.6 | 0.19 |
| mm4_exon_Neat1/NEAT1_3/NEAT1_2/NEAT1_1_chr19_5839836_R | GTCTCGTGGGCTCGGTGCTCTACTGCATTACTGTCTGA | 59.2 | 0.19 |
| mm4_intron_Pdia5_chr16_35405925_F | TCGTCGGCAGCGTCCCACGCACGGCTTTCTAAAA | 59.4 | 0.17 |
| mm4_intron_Pdia5_chr16_35405925_R | GTCTCGTGGGCTCGGGTCTTCCATCCCACCCACAG | 60.0 | 0.17 |
| mm4_intron_Map3k2_chr18_32187736_F | TCGTCGGCAGCGTCTAGAAGCTGTGTGTGGCCAA | 59.5 | 0.16 |
| mm4_intron_Map3k2_chr18_32187736_R | GTCTCGTGGGCTCGGCTGATTCCCTGTCAGCTGCA | 60.0 | 0.16 |
| mm3_intergenic_Pou4f2|Rbmxl1_chr8_78480669_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm3_intergenic_Pou4f2|Rbmxl1_chr8_78480669_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Vwf_chr6_125556161_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Vwf_chr6_125556161_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_exon_Gstcd_chr3_133082112_F | TCGTCGGCAGCGTCGGGCAAAAGCACGATGTCTG | 60.1 | 0.13 |
| mm4_exon_Gstcd_chr3_133082112_R | GTCTCGTGGGCTCGGGGGAGCCTTCTCACATCAGG | 59.8 | 0.13 |
| mm4_intergenic_Gm3839|Ptprg_chr14_11552734_F | TCGTCGGCAGCGTCTTTGCCCTCTGCCTAACCAG | 59.9 | 0.12 |
| mm4_intergenic_Gm3839|Ptprg_chr14_11552734_R | GTCTCGTGGGCTCGGAAGGTCTGTCGCGGAGTTTT | 59.8 | 0.12 |
| mm3_intergenic_Ifrd1|Zfp277_chr12_40281730_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm3_intergenic_Ifrd1|Zfp277_chr12_40281730_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Adcyap1r1|Neurod6_chr6_55620707_F | TCGTCGGCAGCGTCTCATGAAGAGCAAGCTCAGGT | 59.3 | 0.12 |
| mm4_intergenic_Adcyap1r1|Neurod6_chr6_55620707_R | GTCTCGTGGGCTCGGAGGGATCTTGAAGCTTCCAGC | 60.0 | 0.12 |
| mm4_intergenic_Gm25514|Gm13981_chr2_117011374_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm25514|Gm13981_chr2_117011374_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Zc3h18_chr8_122412071_F | TCGTCGGCAGCGTCCCCTGAAGCAGTTGGGAGAA | 59.5 | 0.11 |
| mm4_intron_Zc3h18_chr8_122412071_R | GTCTCGTGGGCTCGGGGCCTTGGACAAAAGCTAAGG | 59.4 | 0.11 |
| mm3_intergenic_Gm9884|Gm24064_chr1_25971716_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Gm9884|Gm24064_chr1_25971716_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intron_Fggy_chr4_95920985_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intron_Fggy_chr4_95920985_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Sec11a|Zfp592_chr7_80993454_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_intergenic_Sec11a|Zfp592_chr7_80993454_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Stim2|Gm24235_chr5_54424806_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Stim2|Gm24235_chr5_54424806_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Gm25442|Gm25696_chr3_35511080_F | TCGTCGGCAGCGTCCCCAAAAGCTCCACCCTGAT | 59.9 | 0.10 |
| mm4_intergenic_Gm25442|Gm25696_chr3_35511080_R | GTCTCGTGGGCTCGGACTTCCCTAGACCTGGGCTT | 59.8 | 0.10 |
| mm4_intergenic_Anks1|Gm15597_chr17_27927639_F | TCGTCGGCAGCGTCTGAGACCCTTTGCCATGTGG | 60.2 | 0.10 |
| mm4_intergenic_Anks1|Gm15597_chr17_27927639_R | GTCTCGTGGGCTCGGTTTCACAGGAAGCGCTGACT | 59.8 | 0.10 |
| mm4_exon_Rab11fip1_chr8_27154317_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Rab11fip1_chr8_27154317_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Col6a6_chr9_105748205_F | TCGTCGGCAGCGTCCGGAGGAGAAAGGAGCTTGG | 60.1 | 0.10 |
| mm4_intron_Col6a6_chr9_105748205_R | GTCTCGTGGGCTCGGGCTCTCTTGCTAACTCCCTGT | 59.4 | 0.10 |
| mm4_intergenic_Gm15899|Gm10612_chr8_122688093_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Gm15899|Gm10612_chr8_122688093_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_Dicer1|Clmn_chr12_104756530_F | TCGTCGGCAGCGTCTTTCTGCCAGAGAGAGACGC | 59.7 | 0.08 |
| mm4_intergenic_Dicer1|Clmn_chr12_104756530_R | GTCTCGTGGGCTCGGTGGCTCAGTCCTGTCTGGTA | 59.8 | 0.08 |
| mm4_exon_Nphs2_chr1_156310901_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Nphs2_chr1_156310901_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Hmx1|Cpz_chr5_35413387_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Hmx1|Cpz_chr5_35413387_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Akap7_chr10_25181450_F | TCGTCGGCAGCGTCAAATGGGTGAGTCTAGGGTAAAA | 57.1 | 0.06 |
| mm4_intron_Akap7_chr10_25181450_R | GTCTCGTGGGCTCGGGCTAGTCTACCTGGTCCACC | 58.8 | 0.06 |
| mm4_intergenic_Grm2|Tex264_chr9_106657050_F | TCGTCGGCAGCGTCAGAGGGAGGACAGCTCTGAG | 60.0 | 0.06 |
| mm4_intergenic_Grm2|Tex264_chr9_106657050_R | GTCTCGTGGGCTCGGCAGCACAGCCTGACACTACA | 59.9 | 0.06 |
| mm4_exon_Erc1_chr6_119722213_F | TCGTCGGCAGCGTCTGACCTGCAGTTGCTGAGAG | 59.9 | 0.05 |
| mm4_exon_Erc1_chr6_119722213_R | GTCTCGTGGGCTCGGACACAAGGAACAGGTGGAGA | 58.4 | 0.05 |
| mm4_exon_Cidec_chr6_113428492_F | TCGTCGGCAGCGTCTGGTATCTTTTGCCAGGGCT | 59.2 | 0.04 |
| mm4_exon_Cidec_chr6_113428492_R | GTCTCGTGGGCTCGGACCTTCTTCCAGGTCCAGGA | 59.8 | 0.04 |
| mm4_intron_Rad54l2_chr9_106696440_F | TCGTCGGCAGCGTCTTCAGCACCCTCTGTTGCTC | 60.2 | 0.04 |
| mm4_intron_Rad54l2_chr9_106696440_R | GTCTCGTGGGCTCGGGCATGTGTGGATATTTTGTCTGGA | 59.6 | 0.04 |
| mm4_intergenic_Scg3|Gm3671_chr9_75684063_F | TCGTCGGCAGCGTCGAGGAAATGAGGAGGAGGCG | 59.8 | 0.04 |
| mm4_intergenic_Scg3|Gm3671_chr9_75684063_R | GTCTCGTGGGCTCGGCGGCAAGGAAAATACGCGAG | 59.9 | 0.04 |
| mm4_intergenic_Mki67|Gm9341_chr7_135818027_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Mki67|Gm9341_chr7_135818027_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Gm7481|Prkd1_chr12_50335943_F | TCGTCGGCAGCGTCATGTAGGCTGGGGAAATGGC | 60.1 | 0.04 |
| mm4_intergenic_Gm7481|Prkd1_chr12_50335943_R | GTCTCGTGGGCTCGGAAGTACTGCGGCCGTAGAAG | 59.8 | 0.04 |
| mm4_intron_Cubn_chr2_13485107_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Cubn_chr2_13485107_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Ptprn2_chr12_116486722_F | TCGTCGGCAGCGTCGTGGATGGTAGGCAGTGAGG | 59.8 | 0.04 |
| mm4_intron_Ptprn2_chr12_116486722_R | GTCTCGTGGGCTCGGCCTCCTCTCTGCAGTCCCTT | 60.6 | 0.04 |
| mm4_exon_Prdm12_chr2_31642380_F | TCGTCGGCAGCGTCAAGACGTGGATCAAGGCAGG | 60.0 | 0.03 |
| mm4_exon_Prdm12_chr2_31642380_R | GTCTCGTGGGCTCGGCCTGCCAACTGGAATCCCTT | 59.9 | 0.03 |
| mm4_intergenic_4933434M16Rik|2610035D17Rik_chr11_112941982_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_4933434M16Rik|2610035D17Rik_chr11_112941982_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Fndc5_chr4_129141942_F | TCGTCGGCAGCGTCCAATGATAGGGGTGGCTGGG | 60.1 | 0.03 |
| mm4_intron_Fndc5_chr4_129141942_R | GTCTCGTGGGCTCGGTGCCTGCCAGATCCCTTCTA | 60.3 | 0.03 |
| mm3_intergenic_Gm20424|Lbx1_chr19_45165088_F | TCGTCGGCAGCGTCGGGGTGAGAAATGGGCTCTC | 60.1 | 0.03 |
| mm3_intergenic_Gm20424|Lbx1_chr19_45165088_R | GTCTCGTGGGCTCGGTCTCCTCTCACAAGAACCAGC | 59.3 | 0.03 |
| mm4_intron_Ppard_chr17_28290153_F | TCGTCGGCAGCGTCCTTTTGCCCCAGAGTCCCTT | 59.8 | 0.02 |
| mm4_intron_Ppard_chr17_28290153_R | GTCTCGTGGGCTCGGGGGTGGCAGGGAAGTTTAGT | 59.5 | 0.02 |
| mm4_exon_Chd8/Gm26590_chr14_52205600_F | TCGTCGGCAGCGTCAACACAGACCCGTTTACCCT | 58.8 | 0.02 |
| mm4_exon_Chd8/Gm26590_chr14_52205600_R | GTCTCGTGGGCTCGGGGTTTTGTGGCCATGTGTCG | 60.3 | 0.02 |
| mm4_intergenic_Gm6984|Htr2a_chr14_74026107_F | TCGTCGGCAGCGTCCAGGCTGAAGGAACTCAGGG | 60.0 | 0.02 |
| mm4_intergenic_Gm6984|Htr2a_chr14_74026107_R | GTCTCGTGGGCTCGGATCTGCTGCATTTCTCGGGT | 59.7 | 0.02 |
| mm4_exon_Prss48_chr3_85997276_F | TCGTCGGCAGCGTCATCCTTCCTCGACTGCCTCT | 60.0 | 0.02 |
| mm4_exon_Prss48_chr3_85997276_R | GTCTCGTGGGCTCGGAGTGAGGCGTGTGAACAACT | 59.8 | 0.02 |
| mm4_intron_Rab3c_chr13_110062323_F | TCGTCGGCAGCGTCCACCAGCCAGTCCTCTCATC | 59.8 | 0.01 |
| mm4_intron_Rab3c_chr13_110062323_R | GTCTCGTGGGCTCGGTCCACAGCATCTAGTTGGGC | 59.7 | 0.01 |
| mm4_intron_Grm7_chr6_111500185_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Grm7_chr6_111500185_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm17396|Rbms3_chr9_117340649_F | TCGTCGGCAGCGTCTACATCCATCCAAGCCAGGC | 59.8 | 0.01 |
| mm4_intergenic_Gm17396|Rbms3_chr9_117340649_R | GTCTCGTGGGCTCGGAGTCCTGGCATTTCATCCCC | 59.7 | 0.01 |
| mm3_intron_Zbtb7c_chr18_75962032_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_Zbtb7c_chr18_75962032_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Thap8/Wdr62_chr7_30280090_F | TCGTCGGCAGCGTCCCGCCTGAGGGAGCAAATAA | 60.1 | 0.01 |
| mm4_exon_Thap8/Wdr62_chr7_30280090_R | GTCTCGTGGGCTCGGAGGCTGGTCGTCCTGTTTAC | 59.6 | 0.01 |
| mm4_intron_Hnrnph3_chr10_63023206_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Hnrnph3_chr10_63023206_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Ppp1r16a_chr15_76693267_F | TCGTCGGCAGCGTCGGGTTCAGTGAGGTGGCTAC | 60.0 | 0.01 |
| mm4_exon_Ppp1r16a_chr15_76693267_R | GTCTCGTGGGCTCGGCCATCATGGTCCTTAGCGCT | 59.8 | 0.01 |
| mm4_intergenic_Sgcz|Gm16204_chr8_38024886_F | TCGTCGGCAGCGTCTCCCAATACAGATTCCTGATGAGA | 58.7 | 0.01 |
| mm4_intergenic_Sgcz|Gm16204_chr8_38024886_R | GTCTCGTGGGCTCGGCTCAAAGGACCTGGGCTCAG | 60.0 | 0.01 |
| mm4_intergenic_Ajap1|Gm25880_chr4_153579661_F | TCGTCGGCAGCGTCGAACAGACTGGCTTCTGGCT | 59.9 | 0.01 |
| mm4_intergenic_Ajap1|Gm25880_chr4_153579661_R | GTCTCGTGGGCTCGGCCGGAGAAGAAACCAAGCCT | 59.9 | 0.01 |
| mm4_exon_Il1rapl2_chrX_137571183_F | TCGTCGGCAGCGTCTGGTAGCACCGCCAACTG | 59.9 | 0.00 |
| mm4_exon_Il1rapl2_chrX_137571183_R | GTCTCGTGGGCTCGGGCCCGCCTCCAAGATTCTTT | 60.6 | 0.00 |
| mm4_intergenic_Gm15958|Pmaip1_chr18_66455125_F | TCGTCGGCAGCGTCAGTGAGAGATACCGTTACAAGAAGA | 59.0 | 0.00 |
| mm4_intergenic_Gm15958|Pmaip1_chr18_66455125_R | GTCTCGTGGGCTCGGGCCCAATAGCTATGACACTCCA | 59.8 | 0.00 |
| mm4_intron_Sp6_chr11_97018060_F | TCGTCGGCAGCGTCCCAACCCTCTGATCCCAGTG | 59.7 | 0.00 |
| mm4_intron_Sp6_chr11_97018060_R | GTCTCGTGGGCTCGGGTCTTCCTCAGTTTCCGGCA | 59.9 | 0.00 |
| mm4_intergenic_n-R5s92|Gadl1_chr9_115835219_F | TCGTCGGCAGCGTCATCAATGCTGGAGGAGAGGC | 59.5 | 0.00 |
| mm4_intergenic_n-R5s92|Gadl1_chr9_115835219_R | GTCTCGTGGGCTCGGTGGATGTGTCTCTGGGCTCT | 60.2 | 0.00 |
| mm4_exon_Fam207a/2810425M01Rik_chr10_77488360_F | TCGTCGGCAGCGTCGCCACGTGTGAGTCCTCTAG | 59.8 | 0.00 |
| mm4_exon_Fam207a/2810425M01Rik_chr10_77488360_R | GTCTCGTGGGCTCGGCAACCTACAGAGCCAGTCCC | 59.7 | 0.00 |
| mm4_intron_Csmd2_chr4_128406387_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Csmd2_chr4_128406387_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Fam20a_chr11_109713791_F | TCGTCGGCAGCGTCGGAGCTGAGCTGTGAGAACA | 59.6 | 0.00 |
| mm4_intron_Fam20a_chr11_109713791_R | GTCTCGTGGGCTCGGGGTGTCTCCGTTTCAGAGCA | 59.9 | 0.00 |
| mm4_exon_Amica1_chr9_45101082_F | TCGTCGGCAGCGTCAGCTGGTGATCATTGTGGGG | 60.0 | 0.00 |
| mm4_exon_Amica1_chr9_45101082_R | GTCTCGTGGGCTCGGGTGTACACACTCAGCCTCCT | 59.0 | 0.00 |
| mm4_intergenic_Usp12|Rpl21_chr5_146795143_F | TCGTCGGCAGCGTCGAGGACGGCTCCACCCAG | 61.7 | 0.00 |
| mm4_intergenic_Usp12|Rpl21_chr5_146795143_R | GTCTCGTGGGCTCGGATCCCCTAAAGACCCGCTCT | 60.0 | 0.00 |
| mm4_intron_Wdr19_chr5_65231986_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Wdr19_chr5_65231986_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_4931406P16Rik_chr7_34261861_F | TCGTCGGCAGCGTCGTGTGGGATCTGGCTGATGA | 59.4 | 0.00 |
| mm4_intron_4931406P16Rik_chr7_34261861_R | GTCTCGTGGGCTCGGTGCCATAGGAGAAGAGGCTG | 58.8 | 0.00 |
| mm4_intron_Usp12_chr5_146754765_F | TCGTCGGCAGCGTCAGGGGAATGATGGCTCCATG | 59.5 | 0.00 |
| mm4_intron_Usp12_chr5_146754765_R | GTCTCGTGGGCTCGGGCCTCTACTGAAGCGGTTGT | 60.0 | 0.00 |
| mm4_intron_Rb1_chr14_73295640_F | TCGTCGGCAGCGTCTCCAACAAGGACAGGCTGAC | 59.8 | 0.00 |
| mm4_intron_Rb1_chr14_73295640_R | GTCTCGTGGGCTCGGGCACAAGCTGTCTGGAATGC | 60.1 | 0.00 |
| mm4_intron_Pebp4_chr14_70036184_F | TCGTCGGCAGCGTCTTTCTAGCTGGCGCCTGAAA | 59.9 | 0.00 |
| mm4_intron_Pebp4_chr14_70036184_R | GTCTCGTGGGCTCGGTTCCAGGGAGCTTGCATCTG | 60.0 | 0.00 |
| mm4_intron_Pdzrn4_chr15_92447983_F | TCGTCGGCAGCGTCTCTTACAGGCGCTTGCTGAA | 59.9 | 0.00 |
| mm4_intron_Pdzrn4_chr15_92447983_R | GTCTCGTGGGCTCGGGAGCCAAAAGGTGTTCGCAA | 59.6 | 0.00 |
| mm4_intron_Lmf1_chr17_25605782_F | TCGTCGGCAGCGTCCTCACAGAACACCGCTTCCT | 59.9 | 0.00 |
| mm4_intron_Lmf1_chr17_25605782_R | GTCTCGTGGGCTCGGAGTCTGCAACTGTGATGGGG | 59.9 | 0.00 |
| mm4_intron_Fam189a1_chr7_65035383_F | TCGTCGGCAGCGTCGGATGAGCAGTAGGTACCACC | 59.5 | 0.00 |
| mm4_intron_Fam189a1_chr7_65035383_R | GTCTCGTGGGCTCGGTCATATGGTGATCCTGCCGG | 59.3 | 0.00 |
| mm4_intron_Elp5_chr11_69968844_F | TCGTCGGCAGCGTCGCTCCTGAGAACAAGCCCTT | 59.9 | 0.00 |
| mm4_intron_Elp5_chr11_69968844_R | GTCTCGTGGGCTCGGCTCTCCAGTAAAGCCACGGG | 60.1 | 0.00 |
| mm4_intron_Casz1_chr4_148931872_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Casz1_chr4_148931872_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Abcc1_chr16_14447277_F | TCGTCGGCAGCGTCCCGCAGCCCTTCTTTTACTT | 58.4 | 0.00 |
| mm4_intron_Abcc1_chr16_14447277_R | GTCTCGTGGGCTCGGCTCAGGGGAGGGAAGTAGAC | 58.2 | 0.00 |
| mm4_intergenic_Tmem45b|Barx2_chr9_31608045_F | TCGTCGGCAGCGTCGCCTCGAGACCTCTGCTTTT | 60.0 | 0.00 |
| mm4_intergenic_Tmem45b|Barx2_chr9_31608045_R | GTCTCGTGGGCTCGGCTCCTTCTGGCCTGAAGCTC | 60.1 | 0.00 |
| mm4_intergenic_Mesp2|Anpep_chr7_79821291_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Mesp2|Anpep_chr7_79821291_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Loh12cr1|Dusp16_chr6_134711829_F | TCGTCGGCAGCGTCACTTTCTGGGCAGGCTCTTG | 60.2 | 0.00 |
| mm4_intergenic_Loh12cr1|Dusp16_chr6_134711829_R | GTCTCGTGGGCTCGGGAGATGATGGCCACTCCCAG | 59.8 | 0.00 |
| mm4_intergenic_Gpd1l|Osbpl10_chr9_114945328_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gpd1l|Osbpl10_chr9_114945328_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gpc6|Dct_chr14_117988435_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gpc6|Dct_chr14_117988435_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm12939|Sfpq_chr4_127005045_F | TCGTCGGCAGCGTCGAGGCCACTTGCTTCTGGTC | 60.9 | 0.00 |
| mm4_intergenic_Gm12939|Sfpq_chr4_127005045_R | GTCTCGTGGGCTCGGTCCTGAAACTCTGAGCAGCG | 60.0 | 0.00 |
| mm4_intergenic_Gm11824|1700120G11Rik_chr4_14190644_F | TCGTCGGCAGCGTCGGCAGGATGTATGGAAGCCA | 59.8 | 0.00 |
| mm4_intergenic_Gm11824|1700120G11Rik_chr4_14190644_R | GTCTCGTGGGCTCGGACCTGGTCCTCGTCAATGTG | 59.6 | 0.00 |
| mm4_intergenic_Gjb5|Gm12947_chr4_127404267_F | TCGTCGGCAGCGTCAGCTAGAGATTGGGAGAGGCA | 60.0 | 0.00 |
| mm4_intergenic_Gjb5|Gm12947_chr4_127404267_R | GTCTCGTGGGCTCGGATGGTTTCTGGCCAGCTCAG | 60.3 | 0.00 |
| mm4_intergenic_Cox8b|Nlrp6_chr7_140904233_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cox8b|Nlrp6_chr7_140904233_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Clec16a|Gm15558_chr16_10654096_F | TCGTCGGCAGCGTCAGTGATGCTCTCTGGGGCTA | 60.0 | 0.00 |
| mm4_intergenic_Clec16a|Gm15558_chr16_10654096_R | GTCTCGTGGGCTCGGTTCCTGAGGCAAGGGGTAGT | 60.1 | 0.00 |
| mm4_intergenic_Cacna2d3|Selk_chr14_29830079_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Cacna2d3|Selk_chr14_29830079_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_BC034090|Xpr1_chr1_155237553_F | TCGTCGGCAGCGTCCACCCCACCTCAGATGAAGC | 60.3 | 0.00 |
| mm4_intergenic_BC034090|Xpr1_chr1_155237553_R | GTCTCGTGGGCTCGGTAAGGCAGGCAGGAAAGAGC | 60.0 | 0.00 |
| mm4_intergenic_5730508B09Rik|Gm10650_chr3_127929397_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_5730508B09Rik|Gm10650_chr3_127929397_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_2810011L19Rik|D430019H16Rik_chr12_105448723_F | TCGTCGGCAGCGTCAAAAGACCAGGCCTCCACCT | 61.0 | 0.00 |
| mm4_intergenic_2810011L19Rik|D430019H16Rik_chr12_105448723_R | GTCTCGTGGGCTCGGGACCTCTGGCACTCATCTGG | 59.8 | 0.00 |
| mm4_exon_Tln1_chr4_43549406_F | TCGTCGGCAGCGTCCAAGGCCCTTTGCTGCTTG | 60.0 | 0.00 |
| mm4_exon_Tln1_chr4_43549406_R | GTCTCGTGGGCTCGGTGTGCAGTCACCACCATCTC | 59.9 | 0.00 |
| mm4_exon_Rest_chr5_77268098_F | TCGTCGGCAGCGTCGCCCCTCAGCTCATCATGTT | 60.1 | 0.00 |
| mm4_exon_Rest_chr5_77268098_R | GTCTCGTGGGCTCGGTCTCCCACGGGCATCAATTC | 60.1 | 0.00 |
| mm4_exon_Plxnd1_chr6_115994190_F | TCGTCGGCAGCGTCAGCGGTGGTCTTCTAGGCTA | 60.0 | 0.00 |
| mm4_exon_Plxnd1_chr6_115994190_R | GTCTCGTGGGCTCGGGTCCACTGTGGGACTGGTG | 59.9 | 0.00 |
| mm3_intergenic_Large|Gm23255_chr8_73604805_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intergenic_Large|Gm23255_chr8_73604805_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm2_exon_Antxr2_chr5_97885216_F | TCGTCGGCAGCGTCGAGCTATTTCCTTCGGCTGC | 59.0 | 0.00 |
| mm2_exon_Antxr2_chr5_97885216_R | GTCTCGTGGGCTCGGTCACCATCGTGTCACGTCAA | 59.6 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm0_exon_Pop5_chr5_115238016 |
GAGCGTGGAGATTGACAGGGCACGCTGCCTGTCCGAGCCTAGTGCCGCCTTCCTCCCGCATCCGGCGCGGACGCCATGGT GCGGTTCAAGCACAGGTAA |
| mm4_intergenic_Diap2|Gm14984_chrX_130389024 |
GCAACCCTACCTGTGCTCTCTATTGAATTGCACTTCCTGCTTCTGCCACCATCCTCTCACATCCGGGGCTACTACCTCTG AAATCTTTAGATTATAAAGTCACAATCATCTAAAACCATGGCTTAGTTGTGTGAAC |
| mm4_exon_B4galnt1_chr10_127165403 |
GTCTACAAAGCCCCGGAGTCCGCAGGCGGGAGGAGTCGGATCCCCGACACTGTCGGGCTCCCTCCCGCCCAGCTCCCGCA TCAGGCCGTCGCCGGCCTCATGAGG |
| mm4_exon_Neat1/NEAT1_3/NEAT1_2/NEAT1_1_chr19_5839836 |
GGAAACCAACAGCTGAAGGCGGCTGGCACGCCTGCCCAGCAGTGGACAGCACCTGCTGCGGGAGGAAGTCGTCCTCTCCC TCCACACGAGTTCGTGTGTAAATAGGATTGTTTAATCAGACAGTAATGCAGTAGAGCA |
| mm4_intron_Pdia5_chr16_35405925 |
CCACGCACGGCTTTCTAAAATGGGAGGTGAATGTCTAAGAAGCAGGAAACCATTAGGCCTCCTGATGTGGGAGGACAGAG GCAAAGCCTGTGGGTGGGATGGAAGAC |
| mm4_intron_Map3k2_chr18_32187736 |
TAGAAGCTGTGTGTGGCCAAGACCACCACATAAAGGAGTGTGTTTACTCTCTGAAGGTTGTAGCCTAATCATACAGCCTG TCCTGAGGTGGGAGGAGGGTGGCAATGCAGCTGACAGGGAATCAG |
| mm4_exon_Gstcd_chr3_133082112 |
GGGCAAAAGCACGATGTCTGCCAAAGTGAAGTACAGTCCTTCTGCAAACACGTGCTCCAGAGGCGGGAGGTCGGCGGCTT TTGCTTTCCTGATGTGAGAAGGCTCCC |
| mm4_intergenic_Gm3839|Ptprg_chr14_11552734 |
TTTGCCCTCTGCCTAACCAGGCCAAGTTGCAGCCACCTTCTTCCCGAATCCGGGGGTTGGGAAAACTCCGCGACAGACCT T |
| mm4_intergenic_Adcyap1r1|Neurod6_chr6_55620707 |
TCATGAAGAGCAAGCTCAGGTTTGAAATCCAGCTGCCTGCCTCCCGCAGCAGGGCTTCCCCAGTCAATTTCTGCTGGAAG CTTCAAGATCCCT |
| mm4_intron_Zc3h18_chr8_122412071 |
CCCTGAAGCAGTTGGGAGAAAGATCCCTTAAAGAAAACCAAAAAGGAGTTAGAAGGTAGAGTCAGCTTGATGCTTTTGGA ATCTGGTGACCATTTTTCCTCTGTCCTCCCGCATCAGGGCCTTAGCTTTTGTCCAAGGCC |
| mm4_intergenic_Gm25442|Gm25696_chr3_35511080 | CCCAAAAGCTCCACCCTGATTGGCCTTAGTGCTGCCTCCCTCCCGAATTTGGTTAAGCCCAGGTCTAGGGAAGT |
| mm4_intergenic_Anks1|Gm15597_chr17_27927639 |
TGAGACCCTTTGCCATGTGGGAGTTAGGCTAGGCCGGCCCGCCTTCCTTCAGCATCAGGACTTGACATAGTTATTTGTTC ATTGAGACGTGCAAAAGCCCAGTCAGCGCTTCCTGTGAAA |
| mm4_intron_Col6a6_chr9_105748205 | CGGAGGAGAAAGGAGCTTGGCTGACTCCTTCCTACCACATCAGGCTTCTTCCCTACAGGGAGTTAGCAAGAGAGC |
| mm4_intergenic_Dicer1|Clmn_chr12_104756530 |
TTTCTGCCAGAGAGAGACGCTGGTGCCAAACACGTAGAGATTTTTGTCTAGCTGTTACACTGGAAAAAAAAGAACATATC ACTTCAGTAGGATGGCGTCTTCCACCAGCATCAGGGTACCAGACAGGACTGAGCCA |
| mm4_intron_Akap7_chr10_25181450 |
AAATGGGTGAGTCTAGGGTAAAAAACCCAAAGCCTGGTGTGGGTGGAAGGAGGCAGTGCTCACGTCAGATTGTAGACTGA GTCAGTATTCCCAGGTGGACCAGGTAGACTAGC |
| mm4_intergenic_Grm2|Tex264_chr9_106657050 |
AGAGGGAGGACAGCTCTGAGAAGCTGCTTGACTCCTTCCTCCCACAGCAGGATGGGGAAGGACACCCCTGGGTAGGGGGT GGTGGATAAGCTTTGTAGTGTCAGGCTGTGCTG |
| mm4_exon_Erc1_chr6_119722213 |
TGACCTGCAGTTGCTGAGAGCTGTCGCTGAGACTGTCCTCCCTTCTGCGGGCCTCCTCCAGCATCTGGGCACTCTTCTTC TTCTCCACCTGTTCCTTGTGT |
| mm4_exon_Cidec_chr6_113428492 |
TGGTATCTTTTGCCAGGGCTTGGAAGTATTCTTCTGTCTCCACGATTGTGCCATCTTCCTCCAGCACCAGGGAGAAGGGC TTGTCTTTAAGTTTCAAGATGTCCTGGACCTGGAAGAAGGT |
| mm4_intron_Rad54l2_chr9_106696440 |
TTCAGCACCCTCTGTTGCTCAGCGGGGAGAATCCTGGAGCTGTACTCTGTCCACCAGTTCTCTTCCAGGAAGCCTGATGC CTTCTTCCAGCATCAGGCACATATGTCCAGACAAAATATCCACACATGC |
| mm4_intergenic_Scg3|Gm3671_chr9_75684063 |
GAGGAAATGAGGAGGAGGCGCATGCTCCATGCAAACCAGAGGCGTGAGGATGGCGTCAGCGACCCAGCGCTACTCCAATC CCGCGGGAACGGAGCGGGGGAGGGGAGACAGGCTTGCTCGCGTATTTTCCTTGCCG |
| mm4_intergenic_Gm7481|Prkd1_chr12_50335943 |
ATGTAGGCTGGGGAAATGGCTCTGTCCTGATGCAGGGGGATGGCTGCAAACAACCATGGAGAATTAATACTATAGTCCTT CTACGGCCGCAGTACTT |
| mm4_intron_Ptprn2_chr12_116486722 |
GTGGATGGTAGGCAGTGAGGGGTGAGCTGCAGCCTTGGCCCGAGCTCCCCTCAGGCTCCACACCTCCTTCCTCCCGCCTC TGGTCTTCAGAGGTGTTTCAACCTTGCAAAACTCAAAGAAAGGGACTGCAGAGAGGAGG |
| mm4_exon_Prdm12_chr2_31642380 |
AAGACGTGGATCAAGGCAGGCACGGAGATGGGCCCCTTCACTGGCCGCGTCATTGCCCCAGAGCATGTGGATATCTGCAA AAACAACAACCTCATGTGGGAGGTAGGCGGGAGCTTTGGAAAGGGATTCCAGTTGGCAGG |
| mm4_intron_Fndc5_chr4_129141942 |
CAATGATAGGGGTGGCTGGGGGCCAGGTAGGGGGGAAAAGGAGCCAGAGGCTGGAGGGAGGCTGCAGCAGCAAGGCAGAG GCCATTCGGGGATGGCAGTGAGCCCTAGAAGGGATCTGGCAGGCA |
| mm3_intergenic_Gm20424|Lbx1_chr19_45165088 |
GGGGTGAGAAATGGGCTCTCATTTTGAAGCCTGCCTCCCGCATCTGACTTCTCCATGATTGGGAGAAGGTATCTAAGCTG GTTCTTGTGAGAGGAGA |
| mm4_intron_Ppard_chr17_28290153 |
CTTTTGCCCCAGAGTCCCTTTGGGGATCCCAAAGGAACCCTGAGACGGTAGGAAGGCTGCAGGGCTCCAACCCCTCCATG TGGGTCCACACTAAACTTCCCTGCCACCC |
| mm4_exon_Chd8/Gm26590_chr14_52205600 |
AACACAGACCCGTTTACCCTAGACTCTACCATCTCACCATCACCAGCAGCTGGGGGAAGGCGGCACACTTGTCGACACAT GGCCACAAAACC |
| mm4_intergenic_Gm6984|Htr2a_chr14_74026107 |
CAGGCTGAAGGAACTCAGGGCAGAAGTGCTCATGTGTCTGTGACACAGTCTTCTAAATATAGCTGGGGGAAGCAGATCCC TTCTCTGTTCCAGAGACGGGAGAAAGGAGGCACTCACCCGAGAAATGCAGCAGAT |
| mm4_exon_Prss48_chr3_85997276 |
ATCCTTCCTCGACTGCCTCTCACCAGCACAGAACATGTCTTCCTTGATGACCCGCTCCAGATCCGGGAGGAAGACACCAA TTGGGTTGTAGAGTTGTTCACACGCCTCACT |
| mm4_intron_Rab3c_chr13_110062323 |
CACCAGCCAGTCCTCTCATCCTGACTCCTTGCTCCCGCCTCTGGTGTGCTCATACATCTTTGTTGACTTGGCTGGATTAA GAGCAAAGCATGGGGCGTGTCTGCGACTGCTTTTCCAGGCCCAACTAGATGCTGTGGA |
| mm4_intergenic_Gm17396|Rbms3_chr9_117340649 |
TACATCCATCCAAGCCAGGCACTGAAGAAGTAACCGGATGCTGCAGGAAGGTGACAGTGGCTGGGTGGTACCCAAGGGGG ATGAAATGCCAGGACT |
| mm4_exon_Thap8/Wdr62_chr7_30280090 |
CCGCCTGAGGGAGCAAATAAAGAAGCGATGGGAGGGACCGAGGCCCCGAGGCGGGACCAAGGTGGCAGAGAAGCCCGGAG TTGGGTAAACAGGACGACCAGCCT |
| mm4_exon_Ppp1r16a_chr15_76693267 | GGGTTCAGTGAGGTGGCTACCCTGCTGCTGGAGCAAGGCGCCAGCCTGAGCGCTAAGGACCATGATGG |
| mm4_intergenic_Sgcz|Gm16204_chr8_38024886 |
TCCCAATACAGATTCCTGATGAGAAAAACTAAATAAATTATTAGGAAACATAAGTAGTATTCTTGTCACTATACTCTTCC TGATCCTGGGGGAAGGGGGCAATGCAGAAGGCACAGGCTGCTGAGCCCAGGTCCTTTGAG |
| mm4_intergenic_Ajap1|Gm25880_chr4_153579661 |
GAACAGACTGGCTTCTGGCTGACCCACCCTCTTCTGTCTATTTTACCTCTCTGTGCGCACTGTCTCCTTCCTTCTGCATC AGGCTTACGTAAGCAGATCAGCTGTCGGGTGCTAAGAGGCTTGGTTTCTTCTCCGG |
| mm4_exon_Il1rapl2_chrX_137571183 |
TGGTAGCACCGCCAACTGGGGTGCCCCGCGTCCCGCGTCCCAGCGTGGCGCGCACTGTTCGGCCTGAACCAGGTGCGGCT GGAAGGAGGCAGCACCAAAGCTAACTCGCTCCAAAGAATCTTGGAGGCGGGC |
| mm4_intergenic_Gm15958|Pmaip1_chr18_66455125 |
AGTGAGAGATACCGTTACAAGAAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNACACACAGACACTGGAGTGTCATAGCTATTGGGC |
| mm4_intron_Sp6_chr11_97018060 |
CCAACCCTCTGATCCCAGTGCGCCCCAGCGAGGGTGTCAGGCGCAGGCTGAGCAACCCGGACCGGGAGGAAGGCGGCGGG TTTAGGAGGTGGATTTCTGTGGTACCCGGCTTGCCGGAAACTGAGGAAGAC |
| mm4_intergenic_n-R5s92|Gadl1_chr9_115835219 | ATCAATGCTGGAGGAGAGGCCTGACTTCTGCCCCCTTCCTCCTGCAGATGGAGAGCCCAGAGACACATCCA |
| mm4_exon_Fam207a/2810425M01Rik_chr10_77488360 |
GCCACGTGTGAGTCCTCTAGATCTCATGGCACACACTGTCCTTGGTCAGAGCTGTTTGCCACCTTCCAGCTGCATCTGGT GTGCCAGCTGCTGCCCGATGGCCAGCAGGGGACTGGCTCTGTAGGTTG |
| mm4_intron_Fam20a_chr11_109713791 |
GGAGCTGAGCTGTGAGAACAGATCTGCAGCCTTCCTACAGGATCTGGGACTTTTCTACTCTTAAAGAGAAAAAGGCCGGA AAGCTACAAATATGCCCATCTCAACTGCTCTGAAACGGAGACACC |
| mm4_exon_Amica1_chr9_45101082 |
AGCTGGTGATCATTGTGGGGATCGTCTGTGCCACCTTCCTGCTGCTTCCGGTTTTGATATTAATTGTGAAGAAAGCCAAG TGGAATAAGAGGTACATGACCGTCCCCCCTCCAGTTAGGAGGCTGAGTGTGTACAC |
| mm4_intergenic_Usp12|Rpl21_chr5_146795143 |
GAGGACGGCTCCACCCAGTGCGCGTTGGGGCGGGGCGAGACCCGTGCCGCGTTCCTCCTGCAGATGGGTCCTAGCGCCGA CGTGAAGCACCTACCTTAGCTTGCAAGAGCGGGTCTTTAGGGGAT |
| mm4_intron_4931406P16Rik_chr7_34261861 |
GTGTGGGATCTGGCTGATGAAGAATGCAATGCTACTGGCAACTGCAGCGGCTCTGGAAACTGCCTCCTGCCTCCTGCCTC AGGCGGAACACTGATGAGACTATGTAGTTGAGTCTTCTCAGCCTCTTCTCCTATGGCA |
| mm4_intron_Usp12_chr5_146754765 |
AGGGGAATGATGGCTCCATGCCGGCTGGGGGAGGCAGGCAGCAGCTGATCTTCACCACCTGGGTCCTTCCACAACCGCTT CAGTAGAGGC |
| mm4_intron_Rb1_chr14_73295640 |
TCCAACAAGGACAGGCTGACTTAACTGCACACTGTCCCCTCCCTCCCCCATCAGGCTGCCCTCCTGTACTATACCTCTCT ACACCAAGTGCCTGGTCTCTGACACTGCATTCCAGACAGCTTGTGC |
| mm4_intron_Pebp4_chr14_70036184 |
TTTCTAGCTGGCGCCTGAAACGGATGGCTTGGAGAGAGGAATGGAGAATGCCTCAGCCAAATGAGGGAGGACGGAGGCAG ACTATGGGGTCAGAAGCTCTGCAGATGCAAGCTCCCTGGAA |
| mm4_intron_Pdzrn4_chr15_92447983 |
TCTTACAGGCGCTTGCTGAAAATAGTACAGGCATGAATGTACCACAGCTCAGAGGCTGGCCGGCACTGTCTTCCCTGGTG AGGGAGGGAGGGGGCAGCTTTCATTGCGAACACCTTTTGGCTC |
| mm4_intron_Lmf1_chr17_25605782 |
CTCACAGAACACCGCTTCCTTCGTGTGGTCTGTGGCTGCCTGGTGGGGCAGGAAGGCAGCAATGTTGTAGTCCTGGGACC CAACAGACTCCCCCCCCCCCCGCCCCCCATCACAGTTGCAGACT |
| mm4_intron_Fam189a1_chr7_65035383 | GGATGAGCAGTAGGTACCACCTTGCCCAGATGAGGGAGGAAAGCATCACCGGCAGGATCACCATATGA |
| mm4_intron_Elp5_chr11_69968844 |
GCTCCTGAGAACAAGCCCTTGCTCATATACACTGTGGTTTGGTCCCTGCTGCCCACCTCCCCCATCTGGTCTGGCTCTCT TGGCCCATGGCTACTCAGGGCCCGTGGCTTTACTGGAGAG |
| mm4_intron_Abcc1_chr16_14447277 |
CCGCAGCCCTTCTTTTACTTTTCAGTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTACTTCCCTCCCCTGAG |
| mm4_intergenic_Tmem45b|Barx2_chr9_31608045 |
GCCTCGAGACCTCTGCTTTTTCCAGCTGAGGATCTGGAGAAAGATATTGCCTCCCTCCTCCTTCATCTGGTCCTGTCTTA TTTTTTACAGCACGAGCTTCAGGCCAGAAGGAG |
| mm4_intergenic_Loh12cr1|Dusp16_chr6_134711829 |
ACTTTCTGGGCAGGCTCTTGGCCGTGCTGTGCCTCCCTTCTTGGGGGCTGCTTTCCTTCCTGGCGAGGGAGGAAGGCGGT AAGGTGCGCTGAGAGCTCTGGGGCACTGCAGCTGGGAGTGGCCATCATCTC |
| mm4_intergenic_Gm12939|Sfpq_chr4_127005045 |
GAGGCCACTTGCTTCTGGTCCCTGATGAGGGAGGGAACCGGCAGAGTAGAAACTGTGACCCCAAAGGGATAGGTGATGTG CTTGTATTCAGTCTGGTTTTACAAAGACGCTGCTCAGAGTTTCAGGA |
| mm4_intergenic_Gm11824|1700120G11Rik_chr4_14190644 |
GGCAGGATGTATGGAAGCCATGTGGCAGAAGAATGTGCCAGATGGTAGAGGAAGGTGGCAGAGAAAGGGCAAGTACCCTG AAGAGATGATGAAGGCAACATCACATTGACGAGGACCAGGT |
| mm4_intergenic_Gjb5|Gm12947_chr4_127404267 |
AGCTAGAGATTGGGAGAGGCAGGCAGACAGACACACGGTGCCCCCTTCCTCCCCCAAAAGGATCAGGAGAATCATGACCT GTTTGGGTTTGCTTGGATTGTATGTACATTTCTAGAGCTGAGCTGGCCAGAAACCAT |
| mm4_intergenic_Clec16a|Gm15558_chr16_10654096 |
AGTGATGCTCTCTGGGGCTATGCCCACACAGGACTCTAGACCCTGTGGCTCCCTCTGCCCACTCTGTGGCCTACCTCCCC CATCTGGCCCAACAAGAGATGGATCACACAAGGTCTAGTGACTACCCCTTGCCTCAGGAA |
| mm4_intergenic_BC034090|Xpr1_chr1_155237553 |
CACCCCACCTCAGATGAAGCATTGCTGCAGCCTCCCTCACCCATCTGGAATGTTCCTTCTGTTTCCACCCAGACCCTTGC AAGCCCTCACAGGCTCCAGCTGTCGGAGAGCCCTCAGTCAGCTCTTTCCTGCCTGCCTTA |
| mm4_intergenic_2810011L19Rik|D430019H16Rik_chr12_105448723 | AAAAGACCAGGCCTCCACCTGAGGGATCTGCAGCCCCCTGCCTCCCTCATCTGGATCCCAGATGAGTGCCAGAGGTC |
| mm4_exon_Tln1_chr4_43549406 |
CAAGGCCCTTTGCTGCTTGCAGAAGGGGCCGGCCATTGCCGCCTTCATCCTCCAGCAGGGCAGCCAATAGCTTCACCCCA CGGGACATCTCCGTCAGGTTGGAAGAGATGGTGGTGACTGCACA |
| mm4_exon_Rest_chr5_77268098 |
GCCCCTCAGCTCATCATGTTAGCCAACGTGGCCCTGACGGGGGAGGCAAGCGGCAGCTGCTGCGATTACCTGGTCGGTGA AGAGAGGCAGATGGCCGAATTGATGCCCGTGGGAGA |
| mm4_exon_Plxnd1_chr6_115994190 |
AGCGGTGGTCTTCTAGGCTACGGTTGCGCGGGAAGAAAGCGCTGCCGAAGCCGGTGTACGTGGCGCCCACGAGCAGACGG CTGCCCCCGGTGCCCGAGGTAGGCGGCAGCACCAGTCCCACAGTGGAC |
| mm2_exon_Antxr2_chr5_97885216 |
GAGCTATTTCCTTCGGCTGCTGCCGCCTTCCTCCCCCACCGGGTTTCTGCTCACACTAACATAATTTGGCATCGTTGACG TGACACGATGGTGA |