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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| mm0_exon_Pop5_chr5_115238021_F | TCGTCGGCAGCGTCGAGCGTGGAGATTGACAGGG | 60.4 | 1.00 |
| mm0_exon_Pop5_chr5_115238021_R | GTCTCGTGGGCTCGGTTACCTGTGCTTGAACCGCA | 60.1 | 1.00 |
| mm4_exon_Usp32_chr11_85139816_F | TCGTCGGCAGCGTCGGGTCGGAGCCTGCTTTC | 60.4 | 0.21 |
| mm4_exon_Usp32_chr11_85139816_R | GTCTCGTGGGCTCGGGCAGAAGCCGCACTTGTTAG | 59.8 | 0.21 |
| mm4_exon_Cnnm1_chr19_43440428_F | TCGTCGGCAGCGTCCTTGCTGCAGTATCACGTGC | 59.9 | 0.21 |
| mm4_exon_Cnnm1_chr19_43440428_R | GTCTCGTGGGCTCGGAAGAAGAGCAGGAGTACGGC | 59.4 | 0.21 |
| mm4_intergenic_Cpq|Tspyl5_chr15_33673231_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Cpq|Tspyl5_chr15_33673231_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm22845|Nt5c1b_chr12_10157767_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intergenic_Gm22845|Nt5c1b_chr12_10157767_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_exon_Acaca_chr11_84391631_F | TCGTCGGCAGCGTCTGCAGTTTGCTGACTTGCAC | 59.8 | 0.20 |
| mm4_exon_Acaca_chr11_84391631_R | GTCTCGTGGGCTCGGCAGCTTGTGCGCCTATGTCA | 61.0 | 0.20 |
| mm4_intergenic_Rpl31-ps23|Ppp1r3b_chr8_35249980_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Rpl31-ps23|Ppp1r3b_chr8_35249980_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_exon_Kif19a_chr11_114786361_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Kif19a_chr11_114786361_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_1500009L16Rik|Nuak1_chr10_84029650_F | TCGTCGGCAGCGTCGCCTTCTGAGCTGTGTGGAT | 60.0 | 0.18 |
| mm4_intergenic_1500009L16Rik|Nuak1_chr10_84029650_R | GTCTCGTGGGCTCGGCGAGGCTTCACACAGCTGTA | 60.0 | 0.18 |
| mm3_intron_Oca2_chr7_56390704_F | TCGTCGGCAGCGTCTATCAGCTCAGCCAGTCAGG | 58.8 | 0.15 |
| mm3_intron_Oca2_chr7_56390704_R | GTCTCGTGGGCTCGGCATACCCAGAGAGAGCCCCT | 60.1 | 0.15 |
| mm4_intron_Klf10_chr15_38299563_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Klf10_chr15_38299563_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_BC042782_chr4_95161347_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_exon_BC042782_chr4_95161347_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intron_Ephb3_chr16_21210983_F | TCGTCGGCAGCGTCCTCCCTCCCTCTCCAGAAAT | 57.8 | 0.13 |
| mm4_intron_Ephb3_chr16_21210983_R | GTCTCGTGGGCTCGGCCTCCACAGTTTAAAACAAGCC | 58.0 | 0.13 |
| mm4_intergenic_Fasl|Suco_chr1_161792570_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Fasl|Suco_chr1_161792570_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm22227|Zfp703_chr8_26830238_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Gm22227|Zfp703_chr8_26830238_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_exon_Taf10_chr7_105744052_F | TCGTCGGCAGCGTCCGGCACCTAGTCCGAGATG | 59.6 | 0.10 |
| mm3_exon_Taf10_chr7_105744052_R | GTCTCGTGGGCTCGGTGGCTGGAGTCGCCACTG | 62.0 | 0.10 |
| mm4_intron_Inadl_chr4_98630943_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Inadl_chr4_98630943_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Olig2_chr16_91227061_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Olig2_chr16_91227061_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_E330009J07Rik_chr6_40436029_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_E330009J07Rik_chr6_40436029_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Lphn3_chr5_81020803_F | TCGTCGGCAGCGTCTTTGGTCTCCTCAGCAGCTG | 59.9 | 0.08 |
| mm4_exon_Lphn3_chr5_81020803_R | GTCTCGTGGGCTCGGACATGCGGCAGTCATAACCA | 60.0 | 0.08 |
| mm4_exon_Wbscr27_chr5_134932652_F | TCGTCGGCAGCGTCCTGCCATCTCCCACTCAAGG | 60.1 | 0.07 |
| mm4_exon_Wbscr27_chr5_134932652_R | GTCTCGTGGGCTCGGAGTCCACCCAGTGATGAGGT | 60.1 | 0.07 |
| mm4_intergenic_4930529M08Rik|Insm1_chr2_146221517_F | TCGTCGGCAGCGTCTGATTTTCCATACGACGCGC | 59.3 | 0.07 |
| mm4_intergenic_4930529M08Rik|Insm1_chr2_146221517_R | GTCTCGTGGGCTCGGTGTCAGGAGGGTTCAATCCG | 59.3 | 0.07 |
| mm4_intergenic_Gm25672|Barhl2_chr5_106227956_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm25672|Barhl2_chr5_106227956_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm25784|Vstm2b_chr7_40898618_F | TCGTCGGCAGCGTCGAGAGATGGTGGTCGCTACG | 59.9 | 0.06 |
| mm4_intergenic_Gm25784|Vstm2b_chr7_40898618_R | GTCTCGTGGGCTCGGGAGCAGCCTCCTCCACAG | 59.4 | 0.06 |
| mm4_exon_Ergic3_chr2_156008077_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Ergic3_chr2_156008077_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_4932435O22Rik|Gm11689_chr11_114628408_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_4932435O22Rik|Gm11689_chr11_114628408_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Eif4g1_chr16_20672914_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Eif4g1_chr16_20672914_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Dlgap4_chr2_156721065_F | TCGTCGGCAGCGTCCCTCTCGGGCGTACAAAACC | 61.0 | 0.05 |
| mm4_exon_Dlgap4_chr2_156721065_R | GTCTCGTGGGCTCGGCGGAGTGACGGATGGACTG | 59.8 | 0.05 |
| mm4_intergenic_Gm20109|E230001N04Rik_chr17_28523190_F | TCGTCGGCAGCGTCCCCGAGCGAAAGAACATCCT | 60.1 | 0.05 |
| mm4_intergenic_Gm20109|E230001N04Rik_chr17_28523190_R | GTCTCGTGGGCTCGGGAAGAAGCAGTACGAAGCGC | 59.6 | 0.05 |
| mm4_exon_Mapk9_chr11_49846937_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Mapk9_chr11_49846937_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Slc1a3_chr15_8638837_F | TCGTCGGCAGCGTCTATGGAGTGGGAGGGAGAGC | 60.1 | 0.04 |
| mm4_intron_Slc1a3_chr15_8638837_R | GTCTCGTGGGCTCGGAGTCCTTGCCTAGAGTCCCA | 59.5 | 0.04 |
| mm4_exon_Bcor_chrX_12080181_F | TCGTCGGCAGCGTCGAGCTTCAGGGCAGGTGG | 60.0 | 0.04 |
| mm4_exon_Bcor_chrX_12080181_R | GTCTCGTGGGCTCGGCTGCTGAGGGTGACAGAGC | 60.0 | 0.04 |
| mm4_intron_Trim24_chr6_37871681_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Trim24_chr6_37871681_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Pcdh10_chr3_45379856_F | TCGTCGGCAGCGTCACTGGACCGAGAACAGCAAG | 59.9 | 0.03 |
| mm4_exon_Pcdh10_chr3_45379856_R | GTCTCGTGGGCTCGGCAGTACGCTGCTGCTGGG | 60.8 | 0.03 |
| mm4_exon_Zcchc3_chr2_152414838_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Zcchc3_chr2_152414838_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Lima1|Gm9763_chr15_99875485_F | TCGTCGGCAGCGTCGCTGCAGCACCTTCAGCT | 60.6 | 0.03 |
| mm4_intergenic_Lima1|Gm9763_chr15_99875485_R | GTCTCGTGGGCTCGGAGCACGTTCGCTCCAAGG | 60.3 | 0.03 |
| mm4_intergenic_Dio3os/Mir1247|Dio3_chr12_110278567_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Dio3os/Mir1247|Dio3_chr12_110278567_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_4930503L19Rik/Stard6_chr18_70472517_F | TCGTCGGCAGCGTCCGCTTTCAAACCGACCCAAC | 60.3 | 0.03 |
| mm4_exon_4930503L19Rik/Stard6_chr18_70472517_R | GTCTCGTGGGCTCGGCGCCCTTTGACCTCTGAACT | 59.9 | 0.03 |
| mm4_intergenic_1700041M05Rik|Grik3_chr4_125490343_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_1700041M05Rik|Grik3_chr4_125490343_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Actn1_chr12_80260247_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Actn1_chr12_80260247_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Pou3f1_chr4_124660183_F | TCGTCGGCAGCGTCCAAGAACCTTGCGCCTGTTT | 59.6 | 0.02 |
| mm4_exon_Pou3f1_chr4_124660183_R | GTCTCGTGGGCTCGGGTTCCCACCTCACCCCAAAT | 59.8 | 0.02 |
| mm4_intron_Gm8923_chr2_175470339_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm8923_chr2_175470339_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm8898_chr2_175930750_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm8898_chr2_175930750_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm4723_chr2_175372788_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm4723_chr2_175372788_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm4245_chr2_175703348_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm4245_chr2_175703348_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm14431_chr2_176521330_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm14431_chr2_176521330_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm14419_chr2_177001261_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm14419_chr2_177001261_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm14306_chr2_176670876_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Gm14306_chr2_176670876_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm8923|Gm11007_chr2_175605799_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm8923|Gm11007_chr2_175605799_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm2004|Gm6182_chr2_176153093_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm2004|Gm6182_chr2_176153093_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gadd45b|Gng7_chr10_80936652_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gadd45b|Gng7_chr10_80936652_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Sema4a|Lmna_chr3_88464929_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Sema4a|Lmna_chr3_88464929_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm11696|Gna13/Gm11696_chr11_109362791_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm11696|Gna13/Gm11696_chr11_109362791_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Ankmy2_chr12_36157856_F | TCGTCGGCAGCGTCTAGGCTCCAAGTCGGGTGTA | 59.9 | 0.02 |
| mm4_intron_Ankmy2_chr12_36157856_R | GTCTCGTGGGCTCGGAACCCCTGTTGCTGAAAGCT | 60.1 | 0.02 |
| mm4_intergenic_A830035A12Rik/Gm11649|A830035A12Rik/Helz_chr11_107547848_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_A830035A12Rik/Gm11649|A830035A12Rik/Helz_chr11_107547848_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Btbd7|Cox8c_chr12_102878533_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Btbd7|Cox8c_chr12_102878533_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Cnot6l_chr5_96161858_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Cnot6l_chr5_96161858_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_Prss48_chr3_85997271_F | TCGTCGGCAGCGTCATCCTTCCTCGACTGCCTCT | 60.0 | 0.01 |
| mm3_exon_Prss48_chr3_85997271_R | GTCTCGTGGGCTCGGAGTGAGGCGTGTGAACAACT | 59.8 | 0.01 |
| mm4_intron_Arf3_chr15_98762304_F | TCGTCGGCAGCGTCAACTCAGGGCCAGTGACAAG | 59.8 | 0.00 |
| mm4_intron_Arf3_chr15_98762304_R | GTCTCGTGGGCTCGGGAGCTAGCTCGGAGGAGAGA | 59.8 | 0.00 |
| mm4_intergenic_Gm26180|Anks1b_chr10_89873013_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26180|Anks1b_chr10_89873013_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Nfia|Nfia/E130114P18Rik_chr4_97775151_F | TCGTCGGCAGCGTCGCTGTAGTTGGAACTGGGCT | 59.9 | 0.00 |
| mm4_intergenic_Nfia|Nfia/E130114P18Rik_chr4_97775151_R | GTCTCGTGGGCTCGGCAAGTTCAGCACCAAAGCCC | 59.9 | 0.00 |
| mm4_intron_Gng10_chr4_59035583_F | TCGTCGGCAGCGTCGTGGGCGTGTCTACAACAGG | 60.9 | 0.00 |
| mm4_intron_Gng10_chr4_59035583_R | GTCTCGTGGGCTCGGTCTGTTCATTCGGTGGCCTC | 60.0 | 0.00 |
| mm4_intergenic_Gtl3|Csnk2a2_chr8_95434928_F | TCGTCGGCAGCGTCCCGCAGAAAGAACGGTTTCC | 59.7 | 0.00 |
| mm4_intergenic_Gtl3|Csnk2a2_chr8_95434928_R | GTCTCGTGGGCTCGGGGAATAGTCCCTTGGCAACCA | 59.9 | 0.00 |
| mm4_intergenic_Grasp|Nr4a1_chr15_101254416_F | TCGTCGGCAGCGTCTCAACGTGGTCCCCTCCTAC | 60.9 | 0.00 |
| mm4_intergenic_Grasp|Nr4a1_chr15_101254416_R | GTCTCGTGGGCTCGGAAGCCCGAATGGATGGACAG | 60.1 | 0.00 |
| mm4_exon_Ntf5_chr7_45415661_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Ntf5_chr7_45415661_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm0_exon_Pop5_chr5_115238021 |
GAGCGTGGAGATTGACAGGGCACGCTGCCTGTCCGAGCCTAGTGCCGCCTTCCTCCCGCATCCGGCGCGGACGCCATGGT GCGGTTCAAGCACAGGTAA |
| mm4_exon_Usp32_chr11_85139816 |
GGGTCGGAGCCTGCTTTCGCCCCCACCCCCCTCCCGCCTCCTTCGCGGCGTCGCCGGCTGACGGTGTCGGCGTCCCCGGC CCCCTCCTCCCCCAACACTAACAAGTGCGGCTTCTGC |
| mm4_exon_Cnnm1_chr19_43440428 |
CTTGCTGCAGTATCACGTGCAACCGCGCCGGGTGCAGGATNNNNNNNNNNNNNNNNNNNNNAGCAGCGCTGGGTGTCAGG CTCCGGGACTGCTGCAGCCGGGGCGCCGTACTCCTGCTCTTCTT |
| mm4_exon_Acaca_chr11_84391631 |
TGCAGTTTGCTGACTTGCACGACACACCAGGCCGGATGCAGGAGAAGGGTGTCATTAACGTAAGTAACACAATTGCCATT TCTGACTTGTCAAAGCCTTGTAAGTGACATAGGCGCACAAGCTG |
| mm4_intergenic_1500009L16Rik|Nuak1_chr10_84029650 |
GCCTTCTGAGCTGTGTGGATCAGAAGACAAAAGCCAGATGATAACATGCATACAGCAAAGAAGGGCTTTCAATCCCAAGC AGGATGAGGGAGGAGGGAAATAACAAGGTATCTACAGCTGTGTGAAGCCTCG |
| mm3_intron_Oca2_chr7_56390704 |
TATCAGCTCAGCCAGTCAGGCTTCAACGTGCAGGATGCGGGAGGATAGGAGAGCAGCCATTGCTAGGGGCTCTCTCTGGG TATG |
| mm4_intron_Ephb3_chr16_21210983 |
CTCCCTCCCTCTCCAGAAATTAAACAGAAATGAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNTCCTCCCGGAGCCAGCGCAGGGCTTGTTTTAAACTGTGGAGG |
| mm3_exon_Taf10_chr7_105744052 |
CGGCACCTAGTCCGAGATGCCCTCCTCCCTCACCCGGCCCGGCCCTCCCTCACCTGGCCCGCGCCGCTCTGCCGGCTCCC CTGCCCGTGCCGCCACGGGGCCCGTGCCCGCAGTGGCGACTCCAGCCA |
| mm4_exon_Lphn3_chr5_81020803 |
TTTGGTCTCCTCAGCAGCTGCTTTTCTTNNNNNNNNNNNNNNNNNNNNNNNTGCAGGAGGAGGGAAAGCAGCTCTGGTTA TGACTGCCGCATGT |
| mm4_exon_Wbscr27_chr5_134932652 |
CTGCCATCTCCCACTCAAGGTCTTGTTTGTAGCTTGGGACCGCGTTGGAGCACTGATAACCTCCTCCGCCGGGTGAGGGA GGACGGAAGACTGTGGAGGACCTCATCACTGGGTGGACT |
| mm4_intergenic_4930529M08Rik|Insm1_chr2_146221517 |
TGATTTTCCATACGACGCGCGGAGCTCCCGCGCCCTTCTCCCGCAGCAGCCGCGGCCCTCGGGTCGCCCCTGCCCCCACC CCATCAGCGCGCCCAATTTCCCCCTGGGCTCCGGCTCGCGGATTGAACCCTCCTGACA |
| mm4_intergenic_Gm25784|Vstm2b_chr7_40898618 |
GAGAGATGGTGGTCGCTACGAATGACCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNATGCTGTGGAGGAGGCTGCTC |
| mm4_exon_Dlgap4_chr2_156721065 |
CCTCTCGGGCGTACAAAACCGGAGCCTCGGGCCGGGCCGCGTGAGGGAGGAGGGTGAGTGCCCGCCGCTGGCCGCAGCTG CCGCCAGTCCATCCGTCACTCCG |
| mm4_intergenic_Gm20109|E230001N04Rik_chr17_28523190 |
CCCGAGCGAAAGAACATCCTGTGCCGCCGCCGGATGCGAGAGGCGGGGGCGCGGGGGAAGCTGGGCGATGCGCTCCGCCC CGCGCTCCTCCTCCCGGGCGCTGCCCGCTCCCGCGCTTCGTACTGCTTCTTC |
| mm4_intron_Slc1a3_chr15_8638837 |
TATGGAGTGGGAGGGAGAGCAGCCAGATGTGCCCCGCCCGCCGGCTGAGGGAGGAGGGAGTTTGCCTGACATGTTAGGAT GGGACTCTAGGCAAGGACT |
| mm4_exon_Bcor_chrX_12080181 | GAGCTTCAGGGCAGGTGGCGACGGCCCCGCGCGATCCTCTCCTCCCGCAGCTGGCCCGAGCTCTGTCACCCTCAGCAG |
| mm4_exon_Pcdh10_chr3_45379856 |
ACTGGACCGAGAACAGCAAGCGGTGCACCGCTACGTGCTGACCGCGGTGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNCCGGCCTGCCCCCCCAGCAGCAGCGTACTG |
| mm4_intergenic_Lima1|Gm9763_chr15_99875485 |
GCTGCAGCACCTTCAGCTNNNNNNNNNNNNNNNNNNNNNNNTCAGAGCCCCGCCCCCTGCCGCGGAGGCGCGCCCGTCTC CCGCCTCCCGCGCGGCCTTGGAGCGAACGTGCT |
| mm4_exon_4930503L19Rik/Stard6_chr18_70472517 |
CGCTTTCAAACCGACCCAACATGGCGCCGGGCCGCAGGGCGCATGTGTAGTACCAGGCGCCGGGAGGGATGGGGGAGGAG GGTCTCGAGAGCCCGGCGAAGAGTTCAGAGGTCAAAGGGCG |
| mm4_exon_Pou3f1_chr4_124660183 |
CAAGAACCTTGCGCCTGTTTCCCTACCGCTTCCCCCTGCTCTCTTTCCGGCCCCCGCGGGATGCGGGATGCTGGGGGAAC CCTGGGGAGAAATTCTCCAAATTTGGGGTGAGGTGGGAAC |
| mm4_intron_Ankmy2_chr12_36157856 |
TAGGCTCCAAGTCGGGTGTATAAAGGGCCCTTTCGACTTCCGGAGGCTTAAGGATCTGGATCCCTTGCAGATCCCCGCCC CTGCTGCGGGTGGAGGGAGCTTTCAGCAACAGGGGTT |
| mm3_exon_Prss48_chr3_85997271 |
ATCCTTCCTCGACTGCCTCTCACCAGCACAGAACATGTCTTCCTTGATGACCCGCTCCAGATCCGGGAGGAAGACACCAA TTGGGTTGTAGAGTTGTTCACACGCCTCACT |
| mm4_intron_Arf3_chr15_98762304 |
AACTCAGGGCCAGTGACAAGCTGCTCCCTCCTTCGGTGACACCGCCCCCGCTCCGCCTGGGGGAGGAAGGCCCCACCTCT CTCCTCCGAGCTAGCTC |
| mm4_intergenic_Nfia|Nfia/E130114P18Rik_chr4_97775151 |
GCTGTAGTTGGAACTGGGCTTTGTAGTGTTCCCCCGCCTTCCACCCTCCTCCGGAGCGGGGGAGGGAGCGGGAGCTGGCA CAGATAGGAGAGAAAGCAGGAGCGGATGTGGAGGGCTTTGGTGCTGAACTTG |
| mm4_intron_Gng10_chr4_59035583 |
GTGGGCGTGTCTACAACAGGCTGGCGACACGCTGGCGACCTGGACTCTGCCCACCCGGCTGCGGGAGGATGATGCTTAGA GATGGGGAGGGAGGCCACCGAATGAACAGA |
| mm4_intergenic_Gtl3|Csnk2a2_chr8_95434928 |
CCGCAGAAAGAACGGTTTCCGGTTCCTTCCGCCCTTAGGCCCGCCCCTTCCTGCCCCCTCGGGCGCGGAACTTGGTTGCC AAGGGACTATTCC |
| mm4_intergenic_Grasp|Nr4a1_chr15_101254416 |
TCAACGTGGTCCCCTCCTACCCGCCCCGGGGGCGGCAGGACGGGTGGGCGGCGCTGTGCTCGGCCAGGTCCGAGAGCCAG CATCCCAGGCCACCCAGTGAGGGAAATGCTGTCCATCCATTCGGGCTT |