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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| mm0_exon_Pop5_chr5_115238119_F | TCGTCGGCAGCGTCTGCGGTTCAAGCACAGGTAA | 60.1 | 1.00 |
| mm0_exon_Pop5_chr5_115238119_R | GTCTCGTGGGCTCGGGTCGTCCAGGCTCAAACGG | 61.0 | 1.00 |
| mm4_exon_Lpar1_chr4_58437626_F | Primer3: not found at this Tm | N.d. | 0.44 |
| mm4_exon_Lpar1_chr4_58437626_R | Primer3: not found at this Tm | N.d. | 0.44 |
| mm4_intergenic_Phyhipl|4930533K18Rik_chr10_70837536_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Phyhipl|4930533K18Rik_chr10_70837536_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Mut|Gm6771_chr17_41199559_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Mut|Gm6771_chr17_41199559_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm6291|Epc1_chr18_6387499_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm6291|Epc1_chr18_6387499_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm23981|Ttc29_chr8_78081523_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm23981|Ttc29_chr8_78081523_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm12832|Cyp4a31_chr4_115561411_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Gm12832|Cyp4a31_chr4_115561411_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Ccdc114|Abcc6_chr7_45962299_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Ccdc114|Abcc6_chr7_45962299_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Atp6v1h|Oprk1_chr1_5228063_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Atp6v1h|Oprk1_chr1_5228063_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Adamts16|8030423J24Rik_chr13_70880200_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_Adamts16|8030423J24Rik_chr13_70880200_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_1700025G04Rik|Tsen15_chr1_152182553_F | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intergenic_1700025G04Rik|Tsen15_chr1_152182553_R | Primer3: not found at this Tm | N.d. | 0.40 |
| mm4_intron_Abca12_chr1_71363103_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intron_Abca12_chr1_71363103_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_intergenic_Otoa|Hs3st2_chr7_121285880_F | TCGTCGGCAGCGTCCAGACCTTTCAGCAAGTGCA | 58.6 | 0.30 |
| mm4_intergenic_Otoa|Hs3st2_chr7_121285880_R | GTCTCGTGGGCTCGGCAAACTCCCATGGTCTGCCT | 59.9 | 0.30 |
| mm4_intergenic_Zbtb7b|Gm15417/Zbtb7b_chr3_89389479_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Zbtb7b|Gm15417/Zbtb7b_chr3_89389479_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intron_Vwa5b2_chr16_20589660_F | TCGTCGGCAGCGTCCTGCAGTGATGGGGAGACTG | 60.1 | 0.17 |
| mm4_intron_Vwa5b2_chr16_20589660_R | GTCTCGTGGGCTCGGGGAAACCATTTAGGCCTCGC | 59.2 | 0.17 |
| mm4_exon_Slc30a3_chr5_31093470_F | TCGTCGGCAGCGTCTCCAAGGACCACTCGGACTC | 60.8 | 0.16 |
| mm4_exon_Slc30a3_chr5_31093470_R | GTCTCGTGGGCTCGGGCTCTGCAGTTCGGACTCC | 60.4 | 0.16 |
| mm4_exon_Whsc1_chr5_33820809_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Whsc1_chr5_33820809_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Ttc28|Mir701_chr5_110979401_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Ttc28|Mir701_chr5_110979401_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intron_Fam19a5_chr15_87668534_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Fam19a5_chr15_87668534_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_A930001A20Rik|Gm9733_chr3_15055669_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intergenic_A930001A20Rik|Gm9733_chr3_15055669_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm3_intron_Nedd9_chr13_41446417_F | TCGTCGGCAGCGTCAAAGGAAAGAGCCAGCACGG | 60.8 | 0.08 |
| mm3_intron_Nedd9_chr13_41446417_R | GTCTCGTGGGCTCGGGGGTGGGGCAAGAAACCTTA | 59.8 | 0.08 |
| mm4_intergenic_1700017N19Rik|Gm26278_chr10_100865702_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_1700017N19Rik|Gm26278_chr10_100865702_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Ccnd1|Tpcn2_chr7_145098385_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Ccnd1|Tpcn2_chr7_145098385_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Mrvi1_chr7_110872734_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Mrvi1_chr7_110872734_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Grm4_chr17_27472942_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Grm4_chr17_27472942_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Ccnl1|Veph1_chr3_65985852_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Ccnl1|Veph1_chr3_65985852_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Bcas3_chr11_85600610_F | TCGTCGGCAGCGTCGAATGTTCCCACTTTATGTAACTGA | 57.3 | 0.04 |
| mm4_intron_Bcas3_chr11_85600610_R | GTCTCGTGGGCTCGGAAGGTTTCCTGAAGCTGCCA | 59.8 | 0.04 |
| mm4_intergenic_Kctd1|Aqp4_chr18_15171359_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Kctd1|Aqp4_chr18_15171359_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Tdrd9_chr12_112013316_F | TCGTCGGCAGCGTCCCCCTAGGTCTGGGTGAGAT | 59.7 | 0.03 |
| mm4_exon_Tdrd9_chr12_112013316_R | GTCTCGTGGGCTCGGGCACAAAGTTCTGAGTGGCAG | 60.0 | 0.03 |
| mm4_intergenic_Ctnnd2|Gm26416_chr15_31185135_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intergenic_Ctnnd2|Gm26416_chr15_31185135_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Reln_chr5_22033416_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Reln_chr5_22033416_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Egr2_chr10_67539267_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_intron_Egr2_chr10_67539267_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Ccdc125_chr13_100693704_F | TCGTCGGCAGCGTCACCTGTGTAAAAGAGCGGCA | 59.8 | 0.03 |
| mm4_exon_Ccdc125_chr13_100693704_R | GTCTCGTGGGCTCGGTCCCAAAGCAACCAAAAGCC | 59.5 | 0.03 |
| mm4_exon_Lrdd_chr7_141439439_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Lrdd_chr7_141439439_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25519|Gm5548_chr3_112421641_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25519|Gm5548_chr3_112421641_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Slc25a37|RP24-67I21.6/Slc25a37_chr14_69276812_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Slc25a37|RP24-67I21.6/Slc25a37_chr14_69276812_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm21464|RP24-175I14.9/Gm21464_chr14_69495062_F | TCGTCGGCAGCGTCCTCACCAGGCGAGGACATTT | 60.0 | 0.02 |
| mm4_intergenic_Gm21464|RP24-175I14.9/Gm21464_chr14_69495062_R | GTCTCGTGGGCTCGGCCCAGGGCACATGGCTTAA | 60.0 | 0.02 |
| mm4_intron_Steap3_chr1_120260414_F | TCGTCGGCAGCGTCCTGTGCATCACCCCTAGTCC | 59.8 | 0.02 |
| mm4_intron_Steap3_chr1_120260414_R | GTCTCGTGGGCTCGGCTGCTCAGAGCTTTGGGTGA | 59.9 | 0.02 |
| mm4_intergenic_mmu-mir-6393|Zdhhc25_chr15_88487257_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_mmu-mir-6393|Zdhhc25_chr15_88487257_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Calcb_chr7_114722106_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Calcb_chr7_114722106_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Tmem52_chr4_155469446_F | TCGTCGGCAGCGTCAGAACTTGGACCGTGCTGG | 59.9 | 0.02 |
| mm4_exon_Tmem52_chr4_155469446_R | GTCTCGTGGGCTCGGCCACTTACCCCACATGCCAT | 60.0 | 0.02 |
| mm4_intergenic_Rpl21-ps10|Gm25574_chr3_38189484_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Rpl21-ps10|Gm25574_chr3_38189484_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Prkce_chr17_86249067_F | TCGTCGGCAGCGTCTGGTCAAGAGCATTGGGAGG | 59.6 | 0.02 |
| mm4_intron_Prkce_chr17_86249067_R | GTCTCGTGGGCTCGGCAGAGCTAACACACGGGGAG | 60.1 | 0.02 |
| mm4_intergenic_Zfp868|Zfp964_chr8_69648113_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Zfp868|Zfp964_chr8_69648113_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm8032|Gm17204_chr14_42571696_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm8032|Gm17204_chr14_42571696_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm22593|Mettl4_chr17_94670949_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm22593|Mettl4_chr17_94670949_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm17165|Gm17038_chr14_42231917_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm17165|Gm17038_chr14_42231917_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13248|Gm21411_chr4_146821132_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13248|Gm21411_chr4_146821132_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13150|C230088H06Rik_chr4_146998217_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13150|C230088H06Rik_chr4_146998217_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13051|Gm26573_chr4_146133292_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13051|Gm26573_chr4_146133292_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_2610305D13Rik|Gm16211_chr4_147666732_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_2610305D13Rik|Gm16211_chr4_147666732_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Slc44a1_chr4_53529071_F | TCGTCGGCAGCGTCCTCGGGGCTCTGGTGTTTTA | 59.6 | 0.01 |
| mm4_intron_Slc44a1_chr4_53529071_R | GTCTCGTGGGCTCGGCCGTTGGTGCTACTAGGATCA | 59.2 | 0.01 |
| mm4_intergenic_Gm25382|Cited2_chr10_17125925_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm25382|Cited2_chr10_17125925_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13322|Nebl_chr2_17219386_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Gm13322|Nebl_chr2_17219386_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Dock2_chr11_34732321_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Dock2_chr11_34732321_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Fancd2_chr6_113538218_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Fancd2_chr6_113538218_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Fam78a_chr2_32078550_F | TCGTCGGCAGCGTCCCGGGTGTCTGTCTGTTCAT | 59.6 | 0.00 |
| mm4_intron_Fam78a_chr2_32078550_R | GTCTCGTGGGCTCGGTTGGGCTAGCTGTGACCAAG | 59.9 | 0.00 |
| mm4_intron_Vstm4_chr14_32919390_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Vstm4_chr14_32919390_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Asb1|Twist2_chr1_91625117_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Asb1|Twist2_chr1_91625117_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Tmem63a_chr1_180965815_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Tmem63a_chr1_180965815_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Magi2_chr5_20442620_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Magi2_chr5_20442620_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ccnd1|Tpcn2_chr7_145035192_F | TCGTCGGCAGCGTCGCCACTCAGTGACACGAGAG | 60.3 | 0.00 |
| mm4_intergenic_Ccnd1|Tpcn2_chr7_145035192_R | GTCTCGTGGGCTCGGAGAGGCTGAAAAGGTTGGCA | 59.8 | 0.00 |
| mm4_intergenic_Gm22805|Gm4791_chr9_46643238_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm22805|Gm4791_chr9_46643238_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Col23a1_chr11_51483766_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Col23a1_chr11_51483766_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ppapdc1a_chr7_129325511_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Ppapdc1a_chr7_129325511_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nr1i2_chr16_38277734_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nr1i2_chr16_38277734_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Adcy8_chr15_64867653_F | TCGTCGGCAGCGTCCAGGTCAGTGGATGAGTTTGGA | 59.9 | 0.00 |
| mm4_intron_Adcy8_chr15_64867653_R | GTCTCGTGGGCTCGGCAGCCATCAGCCCCTAGATG | 59.9 | 0.00 |
| mm4_intergenic_Wdr96|Gsto1_chr19_47840015_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Wdr96|Gsto1_chr19_47840015_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Tgfbr2|Rbms3_chr9_116457592_F | TCGTCGGCAGCGTCCGAACCAGAGCCTGTGTGAA | 60.2 | 0.00 |
| mm4_intergenic_Tgfbr2|Rbms3_chr9_116457592_R | GTCTCGTGGGCTCGGCTAAAGACTGGCTTCTTGCGC | 59.8 | 0.00 |
| mm4_exon_Serpine3_chr14_62689098_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Serpine3_chr14_62689098_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Cabin1_chr10_75746530_F | TCGTCGGCAGCGTCCCACAAAGTCTGCTCACCCA | 60.1 | 0.00 |
| mm4_exon_Cabin1_chr10_75746530_R | GTCTCGTGGGCTCGGCAATCCAACTGTTGCCGTGG | 60.0 | 0.00 |
| mm3_intron_Scamp5_chr9_57457393_F | TCGTCGGCAGCGTCAGCTGTGGGAATCAGGACAC | 59.6 | 0.00 |
| mm3_intron_Scamp5_chr9_57457393_R | GTCTCGTGGGCTCGGCTCCTCACTCCTTTGCCCAG | 60.0 | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm0_exon_Pop5_chr5_115238119 |
TGCGGTTCAAGCACAGGTAAGCAGCGCTGTCCCCGCGCCGTCCCCGCGACCCGGGCCGCGCTCACCCCGCTGTCGCCGCA GGTACCTTCTGTGCGAGCTGGTGTCCGAGGACGCGCGCTGCCGTTTGAGCCTGGACGAC |
| mm4_intergenic_Otoa|Hs3st2_chr7_121285880 |
CAGACCTTTCAGCAAGTGCATGAACCATGAAGCATAGCTTTTCTAACACCAACAAGGCCTGAATTAAAAGCAAAGAGGTA CCTGCCGCAACAGAGGAAGAAAGAAGGCAGACCATGGGAGTTTG |
| mm4_intron_Vwa5b2_chr16_20589660 |
CTGCAGTGATGGGGAGACTGGATTGAGGGCAACCGCTTTGGTGAGCACACAAACGAAGGCACATGCCGCGAAAGGGGAGG TTTCTGCAATAACCTATTTGCTTCTTGTGGGGGGCGAGGCCTAAATGGTTTCC |
| mm4_exon_Slc30a3_chr5_31093470 |
TCCAAGGACCACTCGGACTCCCCGCTGGGCCACCAGTGTGGAGGGAACTGCGGCGACTGTGGCGCTCGGAGTCCGAACTG CAGAGC |
| mm3_intron_Nedd9_chr13_41446417 |
AAAGGAAAGAGCCAGCACGGCAGCAGAAGCACCCGGACAAGGTGCCTGCGGCGGCAGAGGAGGCTTTGCCTTGGGGCAGT TTCCCTCCTAGGTAAGGTTTCTTGCCCCACCC |
| mm4_intron_Bcas3_chr11_85600610 |
GAATGTTCCCACTTTATGTAACTGAATAAAGGAAAACATTTAGTGAGAAGGAAGGTCCCTGTGGCAGCAGTGGTGGCAGC TTCAGGAAACCTT |
| mm4_exon_Tdrd9_chr12_112013316 |
CCCCTAGGTCTGGGTGAGATCAATTACATGCATGAGCTCCTCACAAACATGATTCACAAAAGGTACGTNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNCCCTTTGTCTGCCACTCAGAACTTTGTGC |
| mm4_exon_Ccdc125_chr13_100693704 |
ACCTGTGTAAAAGAGCGGCAACGTGGATCAACAGACAACACCAGGCAGACGATGGTACCTGGGGCGCAAGTGGCAAGAAT GGGGGCTTTTGGTTGCTTTGGGA |
| mm4_intergenic_Gm21464|RP24-175I14.9/Gm21464_chr14_69495062 |
CTCACCAGGCGAGGACATTTTTTTCTTCCTGTAACCCAGTAAGATGGATCTGGGGTTAATGCCCCCCAGTCTGCTGGGAA GGGACCTGAAGTGACAGAGGTTAAGCCATGTGCCCTGGG |
| mm4_intron_Steap3_chr1_120260414 |
CTGTGCATCACCCCTAGTCCCTCATTCTGAGCTGTGCTCCCTTGATGCTGGAAGATGCCTGCGGAGGCAGTGGGGTTCAA GGAGGACTCTCCATCACCAGTGAGCCCCAGAGTCACCCAAAGCTCTGAGCAG |
| mm4_exon_Tmem52_chr4_155469446 |
AGAACTTGGACCGTGCTGGGAAAGGCTGGAGCGGTGGAGTGAGCTAGCAGATACCTCACCTGCTTCAGGTGCCGCTGTCC CCGCAGGTGCCCGCCCCAGGCCCGCTGGAGCAGCCTATGGCATGTGGGGTAAGTGG |
| mm4_intron_Prkce_chr17_86249067 |
TGGTCAAGAGCATTGGGAGGGGCTGAAGGTGCGTGAGGTGACAGGGGTTGATTCTTGGTGACACAAGAGGGATTCTTGGC TCCCCGTGTGTTAGCTCTG |
| mm4_intron_Slc44a1_chr4_53529071 |
CTCGGGGCTCTGGTGTTTTATTAATTTTACAGTTTTTAAGTATATAAAACTCTGAATCATTGTCCAGTCTACAACAAAGT TGGGTCCAATTCCCACTGTCCCCACAGGTGCCTTGAGGTTGATCCTAGTAGCACCAACGG |
| mm4_intron_Fam78a_chr2_32078550 |
CCGGGTGTCTGTCTGTTCATCCCCAGGCCACTTGTTCCCCTCTCTCCGAAGGTAGCTTCATGCTGGAGCCACCACTTGGT CACAGCTAGCCCAA |
| mm4_intergenic_Ccnd1|Tpcn2_chr7_145035192 |
GCCACTCAGTGACACGAGAGTCACACCCCTGGCCCAGCAGGTACCTTGCTCTTTAAAGTCTTGCCTCCAGAGCCTTTGCG AACTCCTGTCTGAAATGCCAACCTTTTCAGCCTCT |
| mm4_intron_Adcy8_chr15_64867653 |
CAGGTCAGTGGATGAGTTTGGACAGTGTTTCTTCAAGGTTCTGTATGCTTGTAGTTTAGCTGTGACCCAACCACTGTAGA CGCAGGTACATTTGGAGCTATCTGTGACCTTCTTTATTCATCTAGGGGCTGATGGCTG |
| mm4_intergenic_Tgfbr2|Rbms3_chr9_116457592 |
CGAACCAGAGCCTGTGTGAACCACAGGAGCTGCAGGTACCTTCAAAAAATAAATGATGGGTACAAGCAAATGCCATAGGG CGCAAGAAGCCAGTCTTTAG |
| mm4_exon_Cabin1_chr10_75746530 |
CCACAAAGTCTGCTCACCCATAGGAGTGCCTGTGTCCAGCAGGCTGGGACTGTGCAGTGGGAAGCTAGCTGCGGTCACAG AGGTGTAGGAGAGCACAGGCTCAGCCACGGCAACAGTTGGATTG |
| mm3_intron_Scamp5_chr9_57457393 |
AGCTGTGGGAATCAGGACACCTCTAAGGTACCTGCTGCCACAGAGGAAGCAGTTCCAGATCTGAATACAGGAAGGTCAGA TAGGAGTTAGCTGGGCAAAGGAGTGAGGAG |