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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| mm0_exon_Pop5_chr5_115238085_F | TCGTCGGCAGCGTCTGCGGTTCAAGCACAGGTAA | 60.1 | 1.00 |
| mm0_exon_Pop5_chr5_115238085_R | GTCTCGTGGGCTCGGCTCGCACAGAAGGTACCTGC | 60.7 | 1.00 |
| mm3_exon_Reps1_chr10_18055895_F | Primer3: not found at this Tm | N.d. | 0.39 |
| mm3_exon_Reps1_chr10_18055895_R | Primer3: not found at this Tm | N.d. | 0.39 |
| mm4_exon_Atp6v0a1_chr11_101055098_F | TCGTCGGCAGCGTCAGGCCATCCACACCATTGAG | 60.0 | 0.26 |
| mm4_exon_Atp6v0a1_chr11_101055098_R | GTCTCGTGGGCTCGGAGAGAGAGCACACTCACGTG | 59.4 | 0.26 |
| mm4_intergenic_Tbx2|Gm11444_chr11_85842147_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intergenic_Tbx2|Gm11444_chr11_85842147_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm4_intron_Ptma_chr1_86527266_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Ptma_chr1_86527266_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intergenic_Banp|Gm22_chr8_122172637_F | Primer3: not found at this Tm | N.d. | 0.17 |
| mm4_intergenic_Banp|Gm22_chr8_122172637_R | Primer3: not found at this Tm | N.d. | 0.17 |
| mm3_exon_Peli1_chr11_21091606_F | TCGTCGGCAGCGTCCTGGTGCCTGCGTTCAAC | 59.3 | 0.16 |
| mm3_exon_Peli1_chr11_21091606_R | GTCTCGTGGGCTCGGCTCACCGGACGACTGCTG | 60.1 | 0.16 |
| mm4_intron_Csmd2_chr4_128476228_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Csmd2_chr4_128476228_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Prr14|Fbrs_chr7_127479114_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intergenic_Prr14|Fbrs_chr7_127479114_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm2_intron_Sctr_chr1_120007340_F | TCGTCGGCAGCGTCCTGCTGCTCATCAATGCAGC | 60.2 | 0.13 |
| mm2_intron_Sctr_chr1_120007340_R | GTCTCGTGGGCTCGGGAAGAGAGATCGGCTGCTCC | 59.9 | 0.13 |
| mm3_exon_Brd3_chr2_27475364_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_exon_Brd3_chr2_27475364_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm3_intron_Eef2_chr10_81177010_F | TCGTCGGCAGCGTCGAGGGGTTGTGCTTGGTGAT | 60.2 | 0.12 |
| mm3_intron_Eef2_chr10_81177010_R | GTCTCGTGGGCTCGGGAGGTGTCCAAGGAAGCCAG | 60.3 | 0.12 |
| mm4_intergenic_Cdkn1b|RP23-45G16.5_chr6_134927115_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intergenic_Cdkn1b|RP23-45G16.5_chr6_134927115_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Fryl_chr5_73255904_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Fryl_chr5_73255904_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_intron_Camta1_chr4_151672537_F | TCGTCGGCAGCGTCCAATAATCTTCGCCGCGGC | 60.0 | 0.10 |
| mm4_intron_Camta1_chr4_151672537_R | GTCTCGTGGGCTCGGCTCCAGACAGCTTGAGGGTC | 59.7 | 0.10 |
| mm4_intergenic_Cgnl1|RP23-79K5.1_chr9_71771656_F | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_intergenic_Cgnl1|RP23-79K5.1_chr9_71771656_R | Primer3: not found at this Tm | N.d. | 0.10 |
| mm4_exon_Sms_chrX_157492100_F | TCGTCGGCAGCGTCCCAGGAGTTAGGAGGTGGGA | 59.9 | 0.08 |
| mm4_exon_Sms_chrX_157492100_R | GTCTCGTGGGCTCGGCGTCCCTGCTTCCTCCTCTA | 60.3 | 0.08 |
| mm3_intron_Gm4425_chr12_22156174_F | TCGTCGGCAGCGTCGAAACTTTTCCCGGGTGTGG | 59.3 | 0.08 |
| mm3_intron_Gm4425_chr12_22156174_R | GTCTCGTGGGCTCGGGAGCGGTAGAGTAGCCCGAG | 61.5 | 0.08 |
| mm3_intron_Gm20472_chr12_23314886_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intron_Gm20472_chr12_23314886_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intron_Gm10479_chr12_20416097_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_intron_Gm10479_chr12_20416097_R | GTCTCGTGGGCTCGGGAAGCCTAACAGGTGCCCAG | 60.6 | 0.08 |
| mm3_intergenic_Hpcal1|B430203G13Rik_chr12_17882356_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_intergenic_Hpcal1|B430203G13Rik_chr12_17882356_R | GTCTCGTGGGCTCGGGCACTGGGTATCGGGCAC | 60.5 | 0.08 |
| mm3_intergenic_Gm5633|Gm22908_chr12_21898770_F | TCGTCGGCAGCGTCGAAGTGTACCGGGTGCCC | 60.0 | 0.08 |
| mm3_intergenic_Gm5633|Gm22908_chr12_21898770_R | GTCTCGTGGGCTCGGCCTCTAGCTTCACCACGCG | 60.5 | 0.08 |
| mm3_intergenic_Gm5633|Gm22908_chr12_21784085_F | TCGTCGGCAGCGTCCTGGGTATCAGGCACCAGG | 59.4 | 0.08 |
| mm3_intergenic_Gm5633|Gm22908_chr12_21784085_R | GTCTCGTGGGCTCGGCATTGAGGAGGTGAGCGGTA | 59.1 | 0.08 |
| mm3_intergenic_Gm5633|Gm22908_chr12_21778419_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Gm5633|Gm22908_chr12_21778419_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Gm3993|Gm10479_chr12_20197076_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_intergenic_Gm3993|Gm10479_chr12_20197076_R | GTCTCGTGGGCTCGGGACACTGGGTATCGGGCAC | 60.1 | 0.08 |
| mm3_intergenic_Gm23913|Gm10480_chr12_18136345_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_intergenic_Gm23913|Gm10480_chr12_18136345_R | GTCTCGTGGGCTCGGGAGGGGACTGGGTATCGGG | 60.8 | 0.08 |
| mm3_intergenic_Gm23913|Gm10480_chr12_17993292_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_intergenic_Gm23913|Gm10480_chr12_17993292_R | GTCTCGTGGGCTCGGGCACTGGGTATCGGGCAC | 60.5 | 0.08 |
| mm3_intergenic_Gm17391|2410018L13Rik_chr12_22905980_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Gm17391|2410018L13Rik_chr12_22905980_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_intergenic_Gm10479|1700030C10Rik_chr12_20615463_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_intergenic_Gm10479|1700030C10Rik_chr12_20615463_R | GTCTCGTGGGCTCGGCGGAGAGCACTGGGTATCG | 59.6 | 0.08 |
| mm3_intergenic_5730507C01Rik|Gm3944_chr12_18610544_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_intergenic_5730507C01Rik|Gm3944_chr12_18610544_R | GTCTCGTGGGCTCGGGCACTGGGTATCGTGCACTA | 59.8 | 0.08 |
| mm3_exon_Gm9312_chr12_24251998_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_exon_Gm9312_chr12_24251998_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm3_exon_Gm5784_chr12_19388247_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_exon_Gm5784_chr12_19388247_R | GTCTCGTGGGCTCGGGCTGGAGAGCACTGGGTATC | 59.8 | 0.08 |
| mm3_exon_Gm3944_chr12_18854031_F | TCGTCGGCAGCGTCATCGAGGAGGTGAGCGGTAG | 60.8 | 0.08 |
| mm3_exon_Gm3944_chr12_18854031_R | GTCTCGTGGGCTCGGCACTGGGTATCCGGCACC | 59.8 | 0.08 |
| mm4_exon_A230072E10Rik/Fam120c_chrX_151344475_F | TCGTCGGCAGCGTCCGCTGCCTTTGGTGCTTAC | 59.7 | 0.08 |
| mm4_exon_A230072E10Rik/Fam120c_chrX_151344475_R | GTCTCGTGGGCTCGGAATGGTGAGCAGGGTGATGG | 60.0 | 0.08 |
| mm4_intergenic_BC052040|Meis2_chr2_115859176_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_BC052040|Meis2_chr2_115859176_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Gm15608_chr10_82178505_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intron_Gm15608_chr10_82178505_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_intergenic_Ppp3r1|Wdr92/Ppp3r1_chr11_17159798_F | TCGTCGGCAGCGTCCTCCCCGAGATTCGCCGC | 62.9 | 0.07 |
| mm4_intergenic_Ppp3r1|Wdr92/Ppp3r1_chr11_17159798_R | GTCTCGTGGGCTCGGAAAAGGCCGAACGAGCCAG | 60.9 | 0.07 |
| mm3_intron_Pmp22_chr11_63132535_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm3_intron_Pmp22_chr11_63132535_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Pdgfb_chr15_80014044_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Pdgfb_chr15_80014044_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intron_Rbpj_chr5_53602769_F | TCGTCGGCAGCGTCCATCCATGCCCACCATCTGT | 60.1 | 0.07 |
| mm4_intron_Rbpj_chr5_53602769_R | GTCTCGTGGGCTCGGAGAGACATAAAGACAGCAGACAGT | 59.4 | 0.07 |
| mm4_exon_Ccdc85b_chr19_5456861_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Ccdc85b_chr19_5456861_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_exon_Fam211a_chr11_62648020_F | TCGTCGGCAGCGTCGACAGGTCAGCCTTCCTCAC | 60.0 | 0.06 |
| mm4_exon_Fam211a_chr11_62648020_R | GTCTCGTGGGCTCGGGGGTGACAGGAGAGCGCC | 62.4 | 0.06 |
| mm4_intergenic_1700128E19Rik|Arhgef7_chr8_11727860_F | TCGTCGGCAGCGTCCCGCCCTACCCACAAAGG | 60.0 | 0.06 |
| mm4_intergenic_1700128E19Rik|Arhgef7_chr8_11727860_R | GTCTCGTGGGCTCGGTCACCGGAGAAGAAAGACGC | 60.0 | 0.06 |
| mm3_exon_Drd4_chr7_141294210_F | TCGTCGGCAGCGTCTTTACTGGGCCACTTTCCGC | 60.8 | 0.06 |
| mm3_exon_Drd4_chr7_141294210_R | GTCTCGTGGGCTCGGGCAGTCTGGGAAGAAGGGAC | 60.0 | 0.06 |
| mm3_intergenic_Chrdl2|Pold3_chr7_100042276_F | TCGTCGGCAGCGTCACGGGCTTTGATTCGTGACT | 59.9 | 0.06 |
| mm3_intergenic_Chrdl2|Pold3_chr7_100042276_R | GTCTCGTGGGCTCGGAACAAACACGTCCCACAAGC | 59.5 | 0.06 |
| mm4_intergenic_Phf10|Gm3417_chr17_14961581_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Phf10|Gm3417_chr17_14961581_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm3435|Tcte3_chr17_15024532_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_Gm3435|Tcte3_chr17_15024532_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_9030025P20Rik|Gm3448_chr17_14993164_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intergenic_9030025P20Rik|Gm3448_chr17_14993164_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Sgip1_chr4_102759397_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Sgip1_chr4_102759397_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_intron_Leprotl1_chr8_34146656_F | TCGTCGGCAGCGTCGTTGCCCCGTTCTGGTCC | 60.6 | 0.06 |
| mm4_intron_Leprotl1_chr8_34146656_R | GTCTCGTGGGCTCGGATGGCGGGCATCAAAGGTG | 61.0 | 0.06 |
| mm4_exon_Tlk1_chr2_70825520_F | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Tlk1_chr2_70825520_R | Primer3: not found at this Tm | N.d. | 0.06 |
| mm4_exon_Gclc_chr9_77754636_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Gclc_chr9_77754636_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_C330006A16Rik|Gm13553_chr2_26179177_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_C330006A16Rik|Gm13553_chr2_26179177_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Nhlrc2|Adrb1_chr19_56722279_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Nhlrc2|Adrb1_chr19_56722279_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_exon_Ptgds_chr2_25469102_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Ptgds_chr2_25469102_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Lmtk2_chr5_144100581_F | TCGTCGGCAGCGTCAAGAGACGTGTGTCCCGAAG | 59.6 | 0.04 |
| mm4_exon_Lmtk2_chr5_144100581_R | GTCTCGTGGGCTCGGCTTCAGTCAGTCGGTCAGCC | 60.3 | 0.04 |
| mm4_intergenic_Cacng4|Gm11650_chr11_107794593_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intergenic_Cacng4|Gm11650_chr11_107794593_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Igf2bp3_chr6_49214416_F | TCGTCGGCAGCGTCCCGGGATCTTAGCGTCCTTG | 60.2 | 0.04 |
| mm4_exon_Igf2bp3_chr6_49214416_R | GTCTCGTGGGCTCGGTCGGGTTTTAAAACGACCCCT | 59.8 | 0.04 |
| mm4_exon_Slc45a4_chr15_73645506_F | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_exon_Slc45a4_chr15_73645506_R | Primer3: not found at this Tm | N.d. | 0.04 |
| mm4_intron_Stat5b_chr11_100850271_F | TCGTCGGCAGCGTCCTCTCGTAGCCACCACCAG | 59.4 | 0.04 |
| mm4_intron_Stat5b_chr11_100850271_R | GTCTCGTGGGCTCGGCTGTCTAGAAGCTGGGCAGG | 59.8 | 0.04 |
| mm4_intron_Htt_chr5_34762131_F | TCGTCGGCAGCGTCCAGAGGAACCGCTGCACC | 60.7 | 0.04 |
| mm4_intron_Htt_chr5_34762131_R | GTCTCGTGGGCTCGGTGGACAGGGAACAGTGTTGG | 59.8 | 0.04 |
| mm4_intergenic_Camk2n1|Vwa5b1_chr4_138462806_F | TCGTCGGCAGCGTCGATGTTCACGGGCTGCTGTA | 60.3 | 0.03 |
| mm4_intergenic_Camk2n1|Vwa5b1_chr4_138462806_R | GTCTCGTGGGCTCGGGCTTTGCACAGAGATTGCCC | 60.1 | 0.03 |
| mm4_intron_Sh3bp4_chr1_89070771_F | TCGTCGGCAGCGTCTTCCCTGCCCTCTGTGGT | 60.1 | 0.03 |
| mm4_intron_Sh3bp4_chr1_89070771_R | GTCTCGTGGGCTCGGCGCTCTCTTCGCTCCTTCTC | 60.2 | 0.03 |
| mm4_exon_Zfp664_chr5_124863026_F | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Zfp664_chr5_124863026_R | Primer3: not found at this Tm | N.d. | 0.03 |
| mm4_exon_Smyd2_chr1_189922087_F | TCGTCGGCAGCGTCAAGCTAGAACGGACACGCG | 60.4 | 0.02 |
| mm4_exon_Smyd2_chr1_189922087_R | GTCTCGTGGGCTCGGACTGCGAGTGCTGCTTCG | 60.7 | 0.02 |
| mm4_intergenic_Gm15754|Med13l_chr5_118560681_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm15754|Med13l_chr5_118560681_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Rala_chr13_17943812_F | TCGTCGGCAGCGTCCTTGAAAGCGAGGGAGGTCG | 60.7 | 0.02 |
| mm4_intron_Rala_chr13_17943812_R | GTCTCGTGGGCTCGGAAGGTCACCTGTATAGCGCC | 59.5 | 0.02 |
| mm4_intergenic_Gm25748|Creb1_chr1_64532413_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm25748|Creb1_chr1_64532413_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Gm10687/Mcam_chr9_44134551_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Gm10687/Mcam_chr9_44134551_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Cd63_chr10_128910154_F | TCGTCGGCAGCGTCGGCGGAGATCTACCTGGAGT | 60.4 | 0.02 |
| mm4_intron_Cd63_chr10_128910154_R | GTCTCGTGGGCTCGGTCAGACCCACGTCTCCCAG | 60.6 | 0.02 |
| mm4_intergenic_Elmod1|Tnfaip8l3_chr9_53975358_F | TCGTCGGCAGCGTCGTTTCCCTGGGAGCAAGACG | 60.9 | 0.02 |
| mm4_intergenic_Elmod1|Tnfaip8l3_chr9_53975358_R | GTCTCGTGGGCTCGGGGCCAAGTGCGCAGTTTTAA | 59.9 | 0.02 |
| mm2_exon_Sbk1_chr7_126273071_F | TCGTCGGCAGCGTCGGGCAGACGAAGATCGACAC | 60.8 | 0.02 |
| mm2_exon_Sbk1_chr7_126273071_R | GTCTCGTGGGCTCGGCTGCAGGACTCTAGGGACCT | 60.0 | 0.02 |
| mm4_exon_Ptms_chr6_124917631_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Ptms_chr6_124917631_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Evx2|Hoxd13_chr2_74667870_F | TCGTCGGCAGCGTCGGGTGGCTGCAAAGTCAACT | 61.1 | 0.02 |
| mm4_intergenic_Evx2|Hoxd13_chr2_74667870_R | GTCTCGTGGGCTCGGCACCCCTCTTCAGCCCTTTG | 60.6 | 0.02 |
| mm4_intergenic_Egr1|Etf1_chr18_34887366_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Egr1|Etf1_chr18_34887366_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Fbxo11|Gm4832_chr17_88065366_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Fbxo11|Gm4832_chr17_88065366_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Wdr20a_chr12_110738295_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Wdr20a_chr12_110738295_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Slc2a1_chr4_119109249_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Slc2a1_chr4_119109249_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ephx4_chr5_107403458_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ephx4_chr5_107403458_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Zfand4|March8_chr6_116337931_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intergenic_Zfand4|March8_chr6_116337931_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Kmt2b_chr7_30588557_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Kmt2b_chr7_30588557_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Ephb2_chr4_136835893_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Ephb2_chr4_136835893_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_Itga5_chr15_103366674_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_exon_Itga5_chr15_103366674_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Rab31_chr17_65729985_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Rab31_chr17_65729985_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Gm10657/Cd276_chr9_58555036_F | TCGTCGGCAGCGTCACAAAGGTGGACCCAGCAG | 59.8 | 0.01 |
| mm4_exon_Gm10657/Cd276_chr9_58555036_R | GTCTCGTGGGCTCGGCAACAGTGGCGGCGATTG | 59.8 | 0.01 |
| mm4_intergenic_Il13|Rps2-ps4_chr11_53636361_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Il13|Rps2-ps4_chr11_53636361_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Arhgef16_chr4_154299870_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Arhgef16_chr4_154299870_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24720|Tshz1_chr18_83936519_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm24720|Tshz1_chr18_83936519_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pou4f1|Rnf219_chr14_104468133_F | TCGTCGGCAGCGTCGCAGCTGTCTCCGTCTGTC | 60.4 | 0.00 |
| mm4_intergenic_Pou4f1|Rnf219_chr14_104468133_R | GTCTCGTGGGCTCGGCTATAAGAGCGGCTCCCACG | 60.0 | 0.00 |
| mm4_exon_Srf_chr17_46555680_F | TCGTCGGCAGCGTCCAGACGACTCTGGCCGAG | 59.5 | 0.00 |
| mm4_exon_Srf_chr17_46555680_R | GTCTCGTGGGCTCGGCAACCTGAACCGGACCCC | 59.9 | 0.00 |
| mm4_intron_Tardbp_chr4_148626594_F | TCGTCGGCAGCGTCCTTAGGCCTTAACGACGCGG | 61.1 | 0.00 |
| mm4_intron_Tardbp_chr4_148626594_R | GTCTCGTGGGCTCGGTCGAGTGTTGCTTCGGAGAG | 59.7 | 0.00 |
| mm4_intergenic_Grin2b/Gm26653|Grin2b_chr6_136173328_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Grin2b/Gm26653|Grin2b_chr6_136173328_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ldb1|Ldb1/Pprc1_chr19_46039698_F | TCGTCGGCAGCGTCGAGGGTGGAGCTGCCCTG | 62.1 | 0.00 |
| mm4_intergenic_Ldb1|Ldb1/Pprc1_chr19_46039698_R | GTCTCGTGGGCTCGGCGGATCCCTTCAATCCCCAG | 59.8 | 0.00 |
| mm4_exon_Snx18_chr13_113617785_F | TCGTCGGCAGCGTCGACGAAGGTGGAGAAGCGAT | 59.8 | 0.00 |
| mm4_exon_Snx18_chr13_113617785_R | GTCTCGTGGGCTCGGCGCTCGGACCTGTCTCTG | 59.5 | 0.00 |
| mm4_exon_Asmt_chrX_170673668_F | TCGTCGGCAGCGTCGATGACCGCCATGACTGACC | 60.8 | 0.00 |
| mm4_exon_Asmt_chrX_170673668_R | GTCTCGTGGGCTCGGCTCAGGCCCGACGACCTC | 61.8 | 0.00 |
| mm4_exon_Tmem229b_chr12_79007222_F | TCGTCGGCAGCGTCCGACTATTCCCGCATCCAGT | 59.6 | 0.00 |
| mm4_exon_Tmem229b_chr12_79007222_R | GTCTCGTGGGCTCGGTTTGCACCGCATCCGTACTA | 59.7 | 0.00 |
| mm4_exon_Rc3h2_chr2_37422801_F | TCGTCGGCAGCGTCGGTCGCTAAGGGCCGCTC | 62.8 | 0.00 |
| mm4_exon_Rc3h2_chr2_37422801_R | GTCTCGTGGGCTCGGAGTTTGAGGCCCTGAAACCG | 60.5 | 0.00 |
| mm4_intron_Vrk1_chr12_106010516_F | TCGTCGGCAGCGTCGGAAGCCCGGTTCTAGAAGG | 59.8 | 0.00 |
| mm4_intron_Vrk1_chr12_106010516_R | GTCTCGTGGGCTCGGCCAGTGCTAAGGAAGTGGCA | 59.9 | 0.00 |
| mm4_intron_Heca_chr10_17947417_F | TCGTCGGCAGCGTCGAGCACTTCCTGACTCGCAT | 60.1 | 0.00 |
| mm4_intron_Heca_chr10_17947417_R | GTCTCGTGGGCTCGGCGGGAGACGCTAAGAATGGT | 59.5 | 0.00 |
| mm4_intergenic_n-R5s168|Plekha5_chr6_140423989_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_n-R5s168|Plekha5_chr6_140423989_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pax3|Sgpp2_chr1_78217311_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pax3|Sgpp2_chr1_78217311_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gcc1|Arf5_chr6_28423494_F | TCGTCGGCAGCGTCTTCAGTTCTTCCGCAAACGC | 59.6 | 0.00 |
| mm4_intergenic_Gcc1|Arf5_chr6_28423494_R | GTCTCGTGGGCTCGGGCAACAGCAGAAGGAGGAGG | 60.6 | 0.00 |
| mm4_intergenic_Ckap4|C330046G13Rik_chr10_84534051_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Ckap4|C330046G13Rik_chr10_84534051_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Scarf2_chr16_17797394_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Scarf2_chr16_17797394_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Hoxa4_chr6_52191582_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Hoxa4_chr6_52191582_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Gm26776/Ccdc3_chr2_5137874_F | TCGTCGGCAGCGTCTAGCCGTGCACCCAGCTC | 62.0 | 0.00 |
| mm4_exon_Gm26776/Ccdc3_chr2_5137874_R | GTCTCGTGGGCTCGGCTACGCTCTAGCCCGGGC | 61.9 | 0.00 |
| mm4_exon_Gm2155/6330419J24Rik_chrX_56374906_F | TCGTCGGCAGCGTCTCAGTGATGCTCAACGTCCG | 60.3 | 0.00 |
| mm4_exon_Gm2155/6330419J24Rik_chrX_56374906_R | GTCTCGTGGGCTCGGGTCTGGAGGCACTGTGCG | 60.7 | 0.00 |
| mm4_exon_Glud1_chr14_34310932_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Glud1_chr14_34310932_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_F3_chr3_121723592_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_F3_chr3_121723592_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Cpeb2/Gm7854_chr5_43234703_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Cpeb2/Gm7854_chr5_43234703_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_exon_Ccdc84_chr9_44417759_F | TCGTCGGCAGCGTCGATCGTGCTCGGGGACATAG | 60.0 | 0.00 |
| mm4_exon_Ccdc84_chr9_44417759_R | GTCTCGTGGGCTCGGTCCTAGCTGGCTTCTGTCCT | 59.9 | 0.00 |
| mm4_exon_AW822252_chrX_53716480_F | TCGTCGGCAGCGTCCAGTCTGGAGGCACTGTGC | 60.6 | 0.00 |
| mm4_exon_AW822252_chrX_53716480_R | GTCTCGTGGGCTCGGTGCGGATCGAGTGAGCAAAC | 61.0 | 0.00 |
| mm3_exon_Yy1_chr12_108793966_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_exon_Yy1_chr12_108793966_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm0_exon_Pop5_chr5_115238085 |
TGCGGTTCAAGCACAGGTAAGCAGCGCTGTCCCCGCGCCGTCCCCGCGACCCGGGCCGCGCTCACCCCGCTGTCGCCGCA GGTACCTTCTGTGCGAG |
| mm4_exon_Atp6v0a1_chr11_101055098 |
AGGCCATCCACACCATTGAGTACTGCTTGGGTTGTATCTCCAACACCGCGTCGTACCTGCGACTCTGGGCCCTCAGCCTG GCCCACGCACGTGAGTGTGCTCTCTCT |
| mm3_exon_Peli1_chr11_21091606 |
CTGGTGCCTGCGTTCAACCGGTGCTNNNNNNNNNNNNNNNNNNNNNNTGTCCGTGCGGCGGGCCGAGCTGGCGTTCCGGC CACCAGCAGTCGTCCGGTGAG |
| mm2_intron_Sctr_chr1_120007340 |
CTGCTGCTCATCAATGCAGCGCACCCTGTGAGTACCCCGCCCCGTCCCCGCGCCCCCGGATGTGGACCCCACGGACCAGT CCACGGTCCTCTATCCGGCCCTAGGAGTTACGGGGAGCAGCCGATCTCTCTTC |
| mm3_intron_Eef2_chr10_81177010 |
GAGGGGTTGTGCTTGGTGATGTGGCAGCGGGCAAAGCGCCGTCCCCGCGCCCCTGGTGACGGGCGGAGGGTGTCCTCGGG AGGTGACAGCCTGTAGGGCTGGCTTCCTTGGACACCTC |
| mm4_intron_Camta1_chr4_151672537 |
CAATAATCTTCGCCGCGGCAAAGCATAAGCTCTGTCTAGATCCAAGTGGGTTTCACGCCGCCTGGGGCGCGGGTACAGTG CGGTTGTCACTTGACCCTCAAGCTGTCTGGAG |
| mm4_exon_Sms_chrX_157492100 |
CCAGGAGTTAGGAGGTGGGAGGGGCCGCGGGCAAGCGANNNNNNNNNNNNNNNNNNNNNNNACCCGCCTCTTAGAGGAGG AAGCAGGGACG |
| mm3_intron_Gm4425_chr12_22156174 |
GAAACTTTTCCCGGGTGTGGGCGCAGGCGGAGGGCACTGGGTATCCGGCACCAGGCGCGGAAGTGTACCGGGTGCCCAGG GCGCAGCGCGATCCCCGCGACCCTAGTCTCCCGCCCGGCTCGGGCTACTCTACCGCTC |
| mm3_intron_Gm10479_chr12_20416097 |
ATCGAGGAGGTGAGCGGTAGCGTAGCCCGCGCCGGGCAGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGGCACCT GTTAGGCTTC |
| mm3_intergenic_Hpcal1|B430203G13Rik_chr12_17882356 |
ATCGAGGAGGTGAGCGGTAGCGTCGCCCGCGCGGGGCGGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGGGACCC GCTAGGCTTCCGCGCCTGGTGCCCGATACCCAGTGC |
| mm3_intergenic_Gm5633|Gm22908_chr12_21898770 |
GAAGTGTACCGGGTGCCCAGGGCGCAGCGCGATCCCCGCGACCCTAGCCTCCCGCCCGGCGCGGGCTACGCTACCGCTCA CCTCCCCGATGGCCGCCACGGTGTTCCGGCACTGGGCCGTGCGCGTGGTGAAGCTAGAGG |
| mm3_intergenic_Gm5633|Gm22908_chr12_21784085 |
CTGGGTATCAGGCACCAGGCGCGGAAGCCTACCGGGTGCCCAGGGCGCAGCGCGATCCCCGCGACCCTAGCCTCCTGCCC GGCGCGGGCTACGCTACCGCTCACCTCCTCAATG |
| mm3_intergenic_Gm3993|Gm10479_chr12_20197076 |
ATCGAGGAGGTGAGCGGTAGCATAGCCCGCGCCCTGCGGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGCCACCC GCTAGGCTTCCGCGCCTGGTGCCCGATACCCAGTGTC |
| mm3_intergenic_Gm23913|Gm10480_chr12_18136345 |
ATCGAGGAGGTGAGCGGTAGCGTCGCCCGCGGGGGGCGGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGGCACCC GGTAGGCTTCCGCGCTTGGTGCCCGATACCCAGTCCCCTC |
| mm3_intergenic_Gm23913|Gm10480_chr12_17993292 |
ATCGAGGAGGTGAGCGGTAGCATAGCCCGCGCCGGGCAGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGGCACCC GGTAGGCTTCCGCGCTTGGTGCCCGATACCCAGTGC |
| mm3_intergenic_Gm10479|1700030C10Rik_chr12_20615463 |
ATCGAGGAGGTGAGCGGTAGCTTAGCCGGCGCCGGGCGGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGGCACCC GCTAGGCTTCCGCGCCTGGTGCCCGATACCCAGTGCTCTCCG |
| mm3_intergenic_5730507C01Rik|Gm3944_chr12_18610544 |
ATCGAGGAGGTGAGCGGTAGCGTAGCCCGCGCCGGGCGGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGGCACCT GGTAGGCTTCCGCGCCTAGTGCACGATACCCAGTGC |
| mm3_exon_Gm5784_chr12_19388247 |
ATCGAGGAGGTGAGCGGTAGCTTAGCCGGCGCCGGGCGGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGGCACCC GCTAGGCTTCCGCGCCTGGTGGCCGATACCCAGTGCTCTCCAGC |
| mm3_exon_Gm3944_chr12_18854031 |
ATCGAGGAGGTGAGCGGTAGCGTAGCCCGCGCCGGGCGGGAGGCTAGGGTCGCGGGGATCGCGCTGCGCCCTGGGCACCC GGTAGGCTTCCGCGCCTGGTGCCGGATACCCAGTG |
| mm4_exon_A230072E10Rik/Fam120c_chrX_151344475 | CGCTGCCTTTGGTGCTTACTCCGGGGGCGCGGGGCCGTCTCGGCACCATCACCCTGCTCACCATT |
| mm4_intergenic_Ppp3r1|Wdr92/Ppp3r1_chr11_17159798 |
CTCCCCGAGATTCGCCGCCCCCGCCCTCCGCACGACCCTGGGCCTCCGGGCGCCCACAGAGCCGCCGCCCCCGGGCTCCT AAGCCCGTGGGCCTCCGCGCAACCCCGGCCCCGTCGCCTGTCTGGCTCGTTCGGCCTTTT |
| mm4_intron_Rbpj_chr5_53602769 |
CATCCATGCCCACCATCTGTAAGCTCCCTACTGCATGCATCCATGTTCACCATCTGTATGCTTCACACCTGCTTCTNNNN NNNNNNNNNNNNNNNNNNNACGTCCCTGGGAAGCACTGTCTGCTGTCTTTATGTCTCT |
| mm4_exon_Fam211a_chr11_62648020 |
GACAGGTCAGCCTTCCTCACCCTAGCCTGAGGCCCCAAATTCAGCAGGAAACACAGAGGCACCTGCTGACACACCGCTCC ATCCCCGCGAAACGGGGACCCTGGGCGGTGCCTCCCGGCGCTCTCCTGTCACCC |
| mm4_intergenic_1700128E19Rik|Arhgef7_chr8_11727860 |
CCGCCCTACCCACAAAGGCGCGCAGCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGTCTTTCTTCTCCGGTGA |
| mm3_exon_Drd4_chr7_141294210 |
TTTACTGGGCCACTTTCCGCGGCCTGCGGCGCTGGGAGGCAGCCCGGCACACCAAACTTCACANNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNTGTCGGACCCTACTCAGGGTCCCTTCTTCCCAGACTGC |
| mm3_intergenic_Chrdl2|Pold3_chr7_100042276 |
ACGGGCTTTGATTCGTGACTCCGGCGTGGACCCAGACGCTAATTAAAATCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNA CAAAGCCCGCTTTGACCTGGCGGCACAGGCCAGGCTTGTGGGACGTGTTTGTT |
| mm4_intron_Leprotl1_chr8_34146656 |
GTTGCCCCGTTCTGGTCCAGGGGCGGAGCGCCACCGCCGGAGGAGCCCGGCTGGGTCGTCCCCACGCCGCCCCGCCCCAT CCCTACGGCCCCGGCCCCGCGGCCCAGGCCCACCTTTGATGCCCGCCAT |
| mm4_exon_Lmtk2_chr5_144100581 | AAGAGACGTGTGTCCCGAAGCAGCCGGCGCCGGTGTCGCTGAGGCGGCGCGGAGGGCTGACCGACTGACTGAAG |
| mm4_exon_Igf2bp3_chr6_49214416 |
CCGGGATCTTAGCGTCCTTGAAGACACTTTCCAGGTCCGCGGGGCCGGCGTGGTCGCTGAGGTTCCCGATGTACAATTTG TTCATTGTGAAAAGGGGTCGTTTTAAAACCCGA |
| mm4_intron_Stat5b_chr11_100850271 |
CTCTCGTAGCCACCACCAGCGCCCCGGGCCCCTCTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG CGATGGCGGCGGCTCGGCCCTGCCCAGCTTCTAGACAG |
| mm4_intron_Htt_chr5_34762131 |
CAGAGGAACCGCTGCACCGACCGTGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCCTGCGTGCTGGG CATGGCCAACACTGTTCCCTGTCCA |
| mm4_intergenic_Camk2n1|Vwa5b1_chr4_138462806 |
GATGTTCACGGGCTGCTGTACTGGCCTGGGTCGCTGAGACGGTGGGGGTCCATCAGGGTCAAAGAATTCCCTCCTTTTCT TGTGTGCACACTGCGTCTTCGGGGGAGGGGGGCAATCTCTGTGCAAAGC |
| mm4_intron_Sh3bp4_chr1_89070771 |
TTCCCTGCCCTCTGTGGTCACAGCCCGACCTGGGCTGCGGATCGTGGTCGCTANNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTTCTGAGAAGGAGCGAAGAGAGCG |
| mm4_exon_Smyd2_chr1_189922087 |
AAGCTAGAACGGACACGCGTGGGGCGGCGCAGGTCCGGCTGCGGGGCAGGCCGTGGCTCAGCGGACGCGGCGCACGTGGC TCCGCGTGGCCCCTCCCGCCCGCACGGTCCCCGCGTACCTGGCGAAGCAGCACTCGCAGT |
| mm4_intron_Rala_chr13_17943812 |
CTTGAAAGCGAGGGAGGTCGGGGTGGAGTGCGGCGCAGGGACTNNNNNNNNNNNNNNNNNNNNCCCAGGTCGCGGGCACC GCCCGGGCACAGCCCTGGGAGCCACCGGCGCTATACAGGTGACCTT |
| mm4_intron_Cd63_chr10_128910154 |
GGCGGAGATCTACCTGGAGTCCGGCCGCGCCCTCCGTGCGTCCCGGGATCCCGAGATCCCGAGGCCCCGCTGCGTGGCGC GCCCCAGTCCGGCCGGCGAGCGGGGAGGGCTGGGAGACGTGGGTCTGA |
| mm4_intergenic_Elmod1|Tnfaip8l3_chr9_53975358 |
GTTTCCCTGGGAGCAAGACGCTGGCGGCTACTGAGCATGCTCAGTCGCGGAANNNNNNNNNNNNNNNNNNNNNNNNAGGA GTGAGCTCAGGCCCCCGCGCCAGAATGTGGGAAGAAAGGGTTAAAACTGCGCACTTGGCC |
| mm2_exon_Sbk1_chr7_126273071 |
GGGCAGACGAAGATCGACACGGCGCCCAGGCCCCCTGCCGCGGCGTCCCCGCGGCCCCAGCCCAGGTAAGTGGGACCCAG GTGAGGGGCGGCAGGTGAGTGGTACCGAGGTCCCTAGAGTCCTGCAG |
| mm4_intergenic_Evx2|Hoxd13_chr2_74667870 |
GGGTGGCTGCAAAGTCAACTCCTGGGTCTGGGGGAGGGCGGGGATGCGAGGTGGGCCTCCCAAAGGGCTGAAGAGGGGTG |
| mm4_exon_Gm10657/Cd276_chr9_58555036 |
ACAAAGGTGGACCCAGCAGCCCACGCCGCCCCGCGCCACGCAAGCACTCACCGCGCCGCGCCGACTCCCGGGACTCGGGG ACGCGGCGGGGCGCAGCCCAATCGCCGCCACTGTTG |
| mm4_intergenic_Pou4f1|Rnf219_chr14_104468133 |
GCAGCTGTCTCCGTCTGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTTNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNCTCGTCGAGCCGCGACCGGCGGCGGCGCGTGGGAGCCGCTCTTATAG |
| mm4_exon_Srf_chr17_46555680 |
CAGACGACTCTGGCCGAGCCCCGCGCCGTTCCCGGGGACCCGGCCCCCGTTCGCCCCGCGAGTNNNNNNNNNNNNNNNNN NNNNNNNNNTCGGGGTCCGGTTCAGGTTG |
| mm4_intron_Tardbp_chr4_148626594 |
CTTAGGCCTTAACGACGCGGCTGCGCGAGGCCAACCAGGCCCCGCTCTACCGCTCCCTCCCCGCGGCGCAGGCCGCACCG GGCCTCTCCGAAGCAACACTCGA |
| mm4_intergenic_Ldb1|Ldb1/Pprc1_chr19_46039698 |
GAGGGTGGAGCTGCCCTGCCGGCCCCGCCCCCTCCCCGCGAGCGAGGAGGAAGAGCGGGCGGAGGGAGGGAGCGAGGAGG GACTGCTGAGAAAAACAAAAGAGATTGAGACCGGGGGACTGGGGATTGAAGGGATCCG |
| mm4_exon_Snx18_chr13_113617785 |
GACGAAGGTGGAGAAGCGATTGAGGTTGCGGCTCACCGTGGCCGAGCTCTTGGCTCCAGACGCTTGGTGCGCCGGGGGCG CCGAGACGCCGCGGGAGCCCAGAGACAGGTCCGAGCG |
| mm4_exon_Asmt_chrX_170673668 |
GATGACCGCCATGACTGACCCGTGACCCCAGGTGCTGTTCGCGGGCTGCGCGCTCCGCGTGTTCGACGCCGCGGCCCTGG GCCCCGTGGACGCCGCGGCGCTGGCGAGGTCGTCGGGCCTGAG |
| mm4_exon_Tmem229b_chr12_79007222 |
CGACTATTCCCGCATCCAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTGCAGCCGCTGCTGCCCCACGGA ACCCAGCCCCAAGCGGCGGCGGCCGCACTCACCCATAGTACGGATGCGGTGCAAA |
| mm4_exon_Rc3h2_chr2_37422801 |
GGTCGCTAAGGGCCGCTCCCGGGGGCCCCGCGACGGCGCGGCTCGGCGACGGAGGCGCCTCGTCTCGCCGGGGCAGAGCT CGGCGGCGGTTTCAGGGCCTCAAACT |
| mm4_intron_Vrk1_chr12_106010516 |
GGAAGCCCGGTTCTAGAAGGCCGCCCGAAGCCTAGCCGGGACCAGGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNCTGGA CCGGCCGAGCCTGCCACTTCCTTAGCACTGG |
| mm4_intron_Heca_chr10_17947417 |
GAGCACTTCCTGACTCGCATTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTG AGGAAGTTGGCGCTCGCCCCGCCGCTGTCGTCTTACCATTCTTAGCGTCTCCCG |
| mm4_intergenic_Gcc1|Arf5_chr6_28423494 |
TTCAGTTCTTCCGCAAACGCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTGACGTCGGGCGGAC CCGGACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTCCTTCTGCTGTTGC |
| mm4_exon_Gm26776/Ccdc3_chr2_5137874 |
TAGCCGTGCACCCAGCTCTCCGGAGCGCGTGCAGGCGAGCCGAGCGCCCCGTCCGCGGTTCTCGGGCAGGCGCTGCGGGC TCCCCGGCTCCCCGCCGTCCCGGGCACCCGGGCGGGCCATGCGCCCGGGCTAGAGCGTAG |
| mm4_exon_Gm2155/6330419J24Rik_chrX_56374906 |
TCAGTGATGCTCAACGTCCGCCTGCAGGTGCGGATCGAGTGAGCAAACGCCCTCCGCCACGGAGGAGAGGGCCATCCGCG CCTTCCGCGCCATCCTGGCGGCCGCAGGAAGGACAGCGGGGCGCACAGTGCCTCCAGAC |
| mm4_exon_Ccdc84_chr9_44417759 |
GATCGTGCTCGGGGACATAGCGCTCCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCTGCAGGACAGAAGCC AGCTAGGA |
| mm4_exon_AW822252_chrX_53716480 |
CAGTCTGGAGGCACTGTGCGCCCCGCTGTCCTTCCTGCGGCCGCCAGGATGGCGCGGAAGGCGCGGATGGCCCTCTCCGC CGTGGCGGAGGGCGTTTGCTCACTCGATCCGCA |