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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
If a primer was not found, the reason is usually that the region around the off-target is too repetitive. To avoid unspecific primers, all repeats are masked for the primer design (not for off-target search). If you think that we should change the parameters here or should use different primer3 settings, please let us know.
| Name | Primer Sequence | Tm | CFD Score |
|---|---|---|---|
| mm0_exon_Pop5_chr5_115238103_F | Primer3: not found at this Tm | N.d. | 1.00 |
| mm0_exon_Pop5_chr5_115238103_R | Primer3: not found at this Tm | N.d. | 1.00 |
| mm4_intergenic_Gm24212|Tox3_chr8_90230423_F | TCGTCGGCAGCGTCAACAAGATGTGAGCGTGCCT | 60.2 | 0.73 |
| mm4_intergenic_Gm24212|Tox3_chr8_90230423_R | GTCTCGTGGGCTCGGCTGCCTTTTGTCCCACCTCA | 60.1 | 0.73 |
| mm3_exon_Ubald2_chr11_116434515_F | TCGTCGGCAGCGTCGCAGTTCGAGGTGTGCAC | 59.0 | 0.61 |
| mm3_exon_Ubald2_chr11_116434515_R | GTCTCGTGGGCTCGGCTGCGGACAAAATACGGGAC | 59.2 | 0.61 |
| mm4_intergenic_Gm22480|Gm23096_chr3_49624315_F | TCGTCGGCAGCGTCTGTCTCCTTCTGCTGTTGGAC | 59.9 | 0.52 |
| mm4_intergenic_Gm22480|Gm23096_chr3_49624315_R | GTCTCGTGGGCTCGGCCCTAGTCTGGAGCTGGACT | 60.0 | 0.52 |
| mm4_intron_Srsf11_chr3_158031820_F | TCGTCGGCAGCGTCCCCATATCCCGGAAGTACGC | 60.0 | 0.44 |
| mm4_intron_Srsf11_chr3_158031820_R | GTCTCGTGGGCTCGGTAGGTGGAGGGATTCTGCCT | 59.6 | 0.44 |
| mm4_exon_Tspan9_chr6_128143498_F | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_exon_Tspan9_chr6_128143498_R | Primer3: not found at this Tm | N.d. | 0.31 |
| mm4_intergenic_Rhob|Slc7a15_chr12_8519843_F | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_intergenic_Rhob|Slc7a15_chr12_8519843_R | Primer3: not found at this Tm | N.d. | 0.29 |
| mm4_exon_Tenm3_chr8_48555133_F | TCGTCGGCAGCGTCAGAGAGAGCTCGGAGCCG | 60.5 | 0.24 |
| mm4_exon_Tenm3_chr8_48555133_R | GTCTCGTGGGCTCGGCTCCAGACCCAGGCAAGTTG | 60.6 | 0.24 |
| mm3_intergenic_Gm15402|Tcf7l1_chr6_72724172_F | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intergenic_Gm15402|Tcf7l1_chr6_72724172_R | Primer3: not found at this Tm | N.d. | 0.24 |
| mm3_intron_Akt1_chr12_112673951_F | Primer3: not found at this Tm | N.d. | 0.22 |
| mm3_intron_Akt1_chr12_112673951_R | Primer3: not found at this Tm | N.d. | 0.22 |
| mm4_intron_Tmem110_chr14_30854863_F | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_intron_Tmem110_chr14_30854863_R | Primer3: not found at this Tm | N.d. | 0.20 |
| mm4_exon_Tuba3a_chr6_125285952_F | TCGTCGGCAGCGTCCTCAGAGGAGACGGAGGTCA | 60.0 | 0.20 |
| mm4_exon_Tuba3a_chr6_125285952_R | GTCTCGTGGGCTCGGGCGTCTGAGCGGGTCTCC | 62.5 | 0.20 |
| mm4_intergenic_Gm7204|Dppa4_chr16_48236103_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm7204|Dppa4_chr16_48236103_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_exon_Dip2a_chr10_76345260_F | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_exon_Dip2a_chr10_76345260_R | Primer3: not found at this Tm | N.d. | 0.19 |
| mm4_intergenic_Gm833|Gm25779_chr4_152866704_F | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_intergenic_Gm833|Gm25779_chr4_152866704_R | Primer3: not found at this Tm | N.d. | 0.18 |
| mm4_exon_Shisa4_chr1_135374965_F | TCGTCGGCAGCGTCCAAGCACCAGCAGGACGA | 59.9 | 0.16 |
| mm4_exon_Shisa4_chr1_135374965_R | GTCTCGTGGGCTCGGGCTTCGTCCAGCTTTGTCCT | 60.6 | 0.16 |
| mm4_exon_Uchl3_chr14_101654097_F | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_exon_Uchl3_chr14_101654097_R | Primer3: not found at this Tm | N.d. | 0.14 |
| mm4_intron_Gnai3_chr3_108128899_F | TCGTCGGCAGCGTCTGCTTATCTTCAATCTACCAAGGA | 57.4 | 0.13 |
| mm4_intron_Gnai3_chr3_108128899_R | GTCTCGTGGGCTCGGCCAGGCTTGCCATCCTTACA | 60.0 | 0.13 |
| mm4_intergenic_Ppp1r13b|2010107E04Rik_chr12_111946421_F | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Ppp1r13b|2010107E04Rik_chr12_111946421_R | Primer3: not found at this Tm | N.d. | 0.13 |
| mm4_intergenic_Ppp1r13b|2010107E04Rik_chr12_111944098_F | TCGTCGGCAGCGTCGCCCCACTCTGCAGAAAGAA | 60.2 | 0.13 |
| mm4_intergenic_Ppp1r13b|2010107E04Rik_chr12_111944098_R | GTCTCGTGGGCTCGGTCATCTAGGTAGGGCTGGGG | 59.8 | 0.13 |
| mm4_intron_Mpdz_chr4_81442566_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intron_Mpdz_chr4_81442566_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Gnb1_chr4_155491572_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_exon_Gnb1_chr4_155491572_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm22119|Gm6026_chrY_2577177_F | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm22119|Gm6026_chrY_2577177_R | Primer3: not found at this Tm | N.d. | 0.12 |
| mm4_intergenic_Gm16501|Rbmy/Gm10256_chrY_2733243_F | TCGTCGGCAGCGTCCCTTGGGGATGTTTAGGCGT | 60.0 | 0.12 |
| mm4_intergenic_Gm16501|Rbmy/Gm10256_chrY_2733243_R | GTCTCGTGGGCTCGGCTCTCCCAGTTGGAAACCCC | 59.9 | 0.12 |
| mm4_exon_Zc3h12a_chr4_125127751_F | TCGTCGGCAGCGTCGGAGTCAGACCCAACGCAG | 60.3 | 0.12 |
| mm4_exon_Zc3h12a_chr4_125127751_R | GTCTCGTGGGCTCGGCTACGAAGGTGCCGTCAGAG | 60.1 | 0.12 |
| mm3_exon_A730015C16Rik/Kti12_chr4_108848174_F | Primer3: not found at this Tm | N.d. | 0.11 |
| mm3_exon_A730015C16Rik/Kti12_chr4_108848174_R | Primer3: not found at this Tm | N.d. | 0.11 |
| mm4_exon_Tspan13_chr12_36042255_F | TCGTCGGCAGCGTCGAATACTCAGGCGGGGAGGA | 60.7 | 0.10 |
| mm4_exon_Tspan13_chr12_36042255_R | GTCTCGTGGGCTCGGGGCTTCTCGTGCTCCAAGAA | 60.3 | 0.10 |
| mm4_intron_Zdhhc17_chr10_111009730_F | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_intron_Zdhhc17_chr10_111009730_R | Primer3: not found at this Tm | N.d. | 0.09 |
| mm4_exon_Edar_chr10_58675590_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Edar_chr10_58675590_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Elavl4_chr4_110211483_F | TCGTCGGCAGCGTCATCTTTGAGCCTGGTGGTGG | 59.9 | 0.08 |
| mm4_exon_Elavl4_chr4_110211483_R | GTCTCGTGGGCTCGGAACAACCCCAGCCAGAAGTC | 60.1 | 0.08 |
| mm4_exon_Bmp2k_chr5_96997673_F | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_Bmp2k_chr5_96997673_R | Primer3: not found at this Tm | N.d. | 0.08 |
| mm4_exon_C1ql3_chr2_13010244_F | TCGTCGGCAGCGTCTCTCCTCCCTCTTGTCAGCA | 59.8 | 0.07 |
| mm4_exon_C1ql3_chr2_13010244_R | GTCTCGTGGGCTCGGCATGTGGGCTGATCTCTGCA | 60.1 | 0.07 |
| mm3_exon_Galc_chr12_98259119_F | TCGTCGGCAGCGTCCACCGCACTCCTGCCTCC | 62.7 | 0.07 |
| mm3_exon_Galc_chr12_98259119_R | GTCTCGTGGGCTCGGATTGTTGTGTGCGCTGCTAG | 59.4 | 0.07 |
| mm4_intergenic_Cd47|Gm8824_chr16_50017123_F | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Cd47|Gm8824_chr16_50017123_R | Primer3: not found at this Tm | N.d. | 0.07 |
| mm4_intergenic_Chrdl2|Pold3_chr7_100042164_F | TCGTCGGCAGCGTCCAGCGCAGGGATCACTCTAG | 59.9 | 0.06 |
| mm4_intergenic_Chrdl2|Pold3_chr7_100042164_R | GTCTCGTGGGCTCGGAGTCACGAATCAAAGCCCGT | 59.9 | 0.06 |
| mm3_intergenic_Gm17111/Dync1h1|Dync1h1_chr12_110665429_F | TCGTCGGCAGCGTCAGGCAGCTCCTGTGACTTTC | 59.9 | 0.06 |
| mm3_intergenic_Gm17111/Dync1h1|Dync1h1_chr12_110665429_R | GTCTCGTGGGCTCGGGGTGCCTGCTTAGAGGTGTT | 59.9 | 0.06 |
| mm4_intergenic_Nrd1/Osbpl9|Osbpl9_chr4_109062376_F | TCGTCGGCAGCGTCGCCATCCTCGTGAAAGAGCT | 60.1 | 0.06 |
| mm4_intergenic_Nrd1/Osbpl9|Osbpl9_chr4_109062376_R | GTCTCGTGGGCTCGGGCTCGTCCATGCCAATGAAG | 59.6 | 0.06 |
| mm4_intron_Ldha_chr7_46850359_F | TCGTCGGCAGCGTCCAAGCTGCTGATCGTCTCCA | 60.1 | 0.06 |
| mm4_intron_Ldha_chr7_46850359_R | GTCTCGTGGGCTCGGAGTGTAGCTAACGCACCGTG | 60.3 | 0.06 |
| mm4_intergenic_B230319C09Rik|Dguok_chr6_83475204_F | TCGTCGGCAGCGTCCCTGCTGCTACATTTCCCCA | 60.0 | 0.05 |
| mm4_intergenic_B230319C09Rik|Dguok_chr6_83475204_R | GTCTCGTGGGCTCGGCCCAACTGAGCCTAAGGAGC | 60.1 | 0.05 |
| mm4_exon_Epha5_chr5_84417175_F | TCGTCGGCAGCGTCGCTGGCAGAGGGAAGTCAAA | 60.2 | 0.05 |
| mm4_exon_Epha5_chr5_84417175_R | GTCTCGTGGGCTCGGCTCTGCTGCGCTCTCGGG | 62.8 | 0.05 |
| mm4_exon_Gpr88_chr3_116251657_F | TCGTCGGCAGCGTCGAACTCCTCGTTCCTCCACG | 60.1 | 0.05 |
| mm4_exon_Gpr88_chr3_116251657_R | GTCTCGTGGGCTCGGCTGGTGTGGGTGAGCCTG | 59.9 | 0.05 |
| mm4_intron_Tex261_chr6_83775616_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intron_Tex261_chr6_83775616_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Rnf214|Rnf214/Pcsk7_chr9_45906186_F | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Rnf214|Rnf214/Pcsk7_chr9_45906186_R | Primer3: not found at this Tm | N.d. | 0.05 |
| mm4_intergenic_Kcnq3|RP24-108J19.1_chr15_66286707_F | TCGTCGGCAGCGTCTTTACAAGCCCTGTGCCAG | 57.9 | 0.04 |
| mm4_intergenic_Kcnq3|RP24-108J19.1_chr15_66286707_R | GTCTCGTGGGCTCGGCTGCTGCTGCTACTGCCG | 61.1 | 0.04 |
| mm4_exon_Plk1_chr7_122169773_F | TCGTCGGCAGCGTCTTGAAGGGGTTGCTGTGTGT | 60.0 | 0.04 |
| mm4_exon_Plk1_chr7_122169773_R | GTCTCGTGGGCTCGGGCTAAGGAAAGAGCAGTCCCA | 59.7 | 0.04 |
| mm4_intron_Cxcr4_chr1_128591027_F | TCGTCGGCAGCGTCTACTGGAGTCCGAGGTAGGC | 60.1 | 0.04 |
| mm4_intron_Cxcr4_chr1_128591027_R | GTCTCGTGGGCTCGGCCCTAGAACCGCTGTGTGTT | 59.9 | 0.04 |
| mm4_intron_Egln1_chr8_124922049_F | TCGTCGGCAGCGTCAATGTCTGCCCCATGTGGAG | 60.0 | 0.04 |
| mm4_intron_Egln1_chr8_124922049_R | GTCTCGTGGGCTCGGACACTCAGGCTATGCTCAGC | 59.8 | 0.04 |
| mm4_intergenic_Serpine3|Gm25162_chr14_62666577_F | TCGTCGGCAGCGTCACGGCTGGTCAGAAACTTGT | 59.8 | 0.03 |
| mm4_intergenic_Serpine3|Gm25162_chr14_62666577_R | GTCTCGTGGGCTCGGCTCCAACCTGCTCTGTGGAA | 59.6 | 0.03 |
| mm4_intergenic_Sgsm1|Aym1_chr5_113346606_F | TCGTCGGCAGCGTCCTTCGGGACAGTGAGGTGTC | 60.0 | 0.03 |
| mm4_intergenic_Sgsm1|Aym1_chr5_113346606_R | GTCTCGTGGGCTCGGCTCCCAAGGTCTGGTCACAC | 59.9 | 0.03 |
| mm4_intergenic_Gm13821|mmu-mir-6240_chr5_114847585_F | TCGTCGGCAGCGTCAGCTCCTGGTCACACCTAGA | 59.5 | 0.03 |
| mm4_intergenic_Gm13821|mmu-mir-6240_chr5_114847585_R | GTCTCGTGGGCTCGGACGTGTGCTGCTTTGGGATA | 59.9 | 0.03 |
| mm4_intergenic_Camsap2|9230116N13Rik_chr1_136346148_F | TCGTCGGCAGCGTCTGGGAACACTGAGCATGCG | 60.6 | 0.03 |
| mm4_intergenic_Camsap2|9230116N13Rik_chr1_136346148_R | GTCTCGTGGGCTCGGATTAATGGATAGGGGCGCGG | 60.0 | 0.03 |
| mm4_exon_Chst11_chr10_82985833_F | TCGTCGGCAGCGTCCTCTGTTCTGAGCCTCCCC | 59.0 | 0.03 |
| mm4_exon_Chst11_chr10_82985833_R | GTCTCGTGGGCTCGGTCCTCATCACTTCCAGCAGC | 59.7 | 0.03 |
| mm4_intergenic_Sbno1|Sbno1/AC127339.1_chr5_124425283_F | TCGTCGGCAGCGTCCGGACAGCAGGAGGAAACAG | 60.6 | 0.03 |
| mm4_intergenic_Sbno1|Sbno1/AC127339.1_chr5_124425283_R | GTCTCGTGGGCTCGGCACACCACGGCTCCTCAG | 60.0 | 0.03 |
| mm4_intergenic_Gm26214|Zcchc2_chr1_105990156_F | TCGTCGGCAGCGTCGGCACGGTCAGATCTCTCAA | 59.4 | 0.02 |
| mm4_intergenic_Gm26214|Zcchc2_chr1_105990156_R | GTCTCGTGGGCTCGGTGGGTTTGGGACTTTCGGAC | 60.1 | 0.02 |
| mm4_intergenic_Gm14513|Gm26314_chrX_11723325_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intergenic_Gm14513|Gm26314_chrX_11723325_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Atp9a_chr2_168742022_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_intron_Atp9a_chr2_168742022_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Pitx1_chr13_55831403_F | Primer3: not found at this Tm | N.d. | 0.02 |
| mm4_exon_Pitx1_chr13_55831403_R | Primer3: not found at this Tm | N.d. | 0.02 |
| mm3_intron_1810041L15Rik_chr15_84446500_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm3_intron_1810041L15Rik_chr15_84446500_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Peli2_chr14_48121053_F | TCGTCGGCAGCGTCGATAGCTCCGGGGAAGCC | 59.2 | 0.01 |
| mm4_exon_Peli2_chr14_48121053_R | GTCTCGTGGGCTCGGCGCCACTACACTCCCATCC | 59.8 | 0.01 |
| mm4_intron_Coro2b_chr9_62477300_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Coro2b_chr9_62477300_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Calm1_chr12_100199947_F | TCGTCGGCAGCGTCACCTCCTCTGAGTTTTGGGC | 59.5 | 0.01 |
| mm4_intron_Calm1_chr12_100199947_R | GTCTCGTGGGCTCGGGCGTTGGATGCAGTGGGT | 60.6 | 0.01 |
| mm4_intron_Ptk2_chr15_73422802_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_intron_Ptk2_chr15_73422802_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Tll1_chr8_64205753_F | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Tll1_chr8_64205753_R | Primer3: not found at this Tm | N.d. | 0.01 |
| mm4_exon_Akap8l_chr17_32332463_F | TCGTCGGCAGCGTCGGCTCAAATTCCAGGCAAGC | 60.1 | 0.00 |
| mm4_exon_Akap8l_chr17_32332463_R | GTCTCGTGGGCTCGGTGCAGCCTGTGACCTTTTCA | 60.1 | 0.00 |
| mm4_intron_Nfic_chr10_81430558_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Nfic_chr10_81430558_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Tprg_chr16_25388684_F | TCGTCGGCAGCGTCAGTGTGTTGTGATCTCTGGTCA | 59.3 | 0.00 |
| mm4_intron_Tprg_chr16_25388684_R | GTCTCGTGGGCTCGGACACAGAATAGTAAATGCCTGCA | 58.4 | 0.00 |
| mm4_intron_Prkx_chrX_77791029_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Prkx_chrX_77791029_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Lrp5_chr19_3628694_F | TCGTCGGCAGCGTCCCCTTGTCCCTGACCTGTTT | 59.5 | 0.00 |
| mm4_intron_Lrp5_chr19_3628694_R | GTCTCGTGGGCTCGGAAACTTCTGCCCTCTGCCTC | 59.9 | 0.00 |
| mm4_intron_Cenpm_chr15_82244522_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_Cenpm_chr15_82244522_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intron_C4a_chr17_34810414_F | TCGTCGGCAGCGTCGCAAGACATGAGGGCCTCTT | 60.0 | 0.00 |
| mm4_intron_C4a_chr17_34810414_R | GTCTCGTGGGCTCGGCAGCGCTGTCCTGTATGACT | 59.8 | 0.00 |
| mm4_intergenic_Pnpla3|Samm50_chr15_84190812_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Pnpla3|Samm50_chr15_84190812_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26089|Fat1_chr8_44946281_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm26089|Fat1_chr8_44946281_R | Primer3: not found at this Tm | N.d. | 0.00 |
| mm4_intergenic_Gm11468|Gm14268_chr2_166307903_F | TCGTCGGCAGCGTCGCTCAAGGCCATTTTGTGATT | 57.6 | 0.00 |
| mm4_intergenic_Gm11468|Gm14268_chr2_166307903_R | GTCTCGTGGGCTCGGATGAGAGCTCCCCAGAGTGT | 59.9 | 0.00 |
| mm4_intergenic_1700041M05Rik|Grik3_chr4_125425605_F | TCGTCGGCAGCGTCATGCCTCTCATTTGCAGCCT | 60.0 | 0.00 |
| mm4_intergenic_1700041M05Rik|Grik3_chr4_125425605_R | GTCTCGTGGGCTCGGTGCATAGTCTCAGGACAGTGC | 59.7 | 0.00 |
| mm4_exon_Lipe_chr7_25388269_F | TCGTCGGCAGCGTCCTCCTGGTCGGTTGATGGTC | 60.1 | 0.00 |
| mm4_exon_Lipe_chr7_25388269_R | GTCTCGTGGGCTCGGCAACCTAGCAGAGCTGGAGG | 59.8 | 0.00 |
| mm3_intron_Dennd4c_chr4_86762418_F | Primer3: not found at this Tm | N.d. | 0.00 |
| mm3_intron_Dennd4c_chr4_86762418_R | Primer3: not found at this Tm | N.d. | 0.00 |
These only list off-targets that have primers in the table above. Primers underlined, off-targets in bold.
| mm4_intergenic_Gm24212|Tox3_chr8_90230423 |
AACAAGATGTGAGCGTGCCTAATAAAAAGGGCCCACCCTTGCTGATTTATAGCCATCTAATTACCTGACAAATATCCAGG CTGCGTTCACCCTGCTGGGTAGCAGTATGTCAATATGAGGTGGGACAAAAGGCAG |
| mm3_exon_Ubald2_chr11_116434515 |
GCAGTTCGAGGTGTGCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNCCAGGCCTCGCTCACGCCGCTGCGTCCCGTATTTTGTCCGCAG |
| mm4_intergenic_Gm22480|Gm23096_chr3_49624315 |
TGTCTCCTTCTGCTGTTGGACTCAGAGTCTGTCTGGCTGTAACCTGTATAGAGGCAGAGGATACAGGGAGGTGAACACGG CCTGGATTCCCTGCTCAATTCACTGGAGCCTAAGTCCAGCTCCAGACTAGGG |
| mm4_intron_Srsf11_chr3_158031820 |
CCCATATCCCGGAAGTACGCGTCCAGTTCGCGCTCCCGCAACTGTCCCGGCTGCGCCCACCCAGCTGAGCCACCTCAGAA ATGGTTCCTGCTTACTCCACATAGCACCAGAAGCATTTTCAGGCAGAATCCCTCCACCTA |
| mm4_exon_Tenm3_chr8_48555133 |
AGAGAGAGCTCGGAGCCGCGCGTGGAACCGCGCGAGGAACCGCCCAGGCCGCGCTCACCCACCTTGCCGCCGCGCGCCCT CGCCGTGGCCGTGCGGAGCGGAGCCCGGCGCTGCCAACTTGCCTGGGTCTGGAG |
| mm4_exon_Tuba3a_chr6_125285952 |
CTCAGAGGAGACGGAGGTCAACCTCCCGTGGGGCCGACCCCCCCAGAGGCCCCGAGGCCAACCACCCCGGCCTGGGACTG CTCCCACCACCCCGGCCGCTCTCACCATGCTGAACTCCGGAGACCCGCTCAGACGC |
| mm4_exon_Shisa4_chr1_135374965 |
CAAGCACCAGCAGGACGACGGCTGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCGAGAGGGGGCTGGGCG CGGCCAGGACGGCCTGGAAAAGGGGCCGCAGGACAAAGCTGGACGAAGC |
| mm4_intron_Gnai3_chr3_108128899 |
TGCTTATCTTCAATCTACCAAGGATAATAGGCTATAAGAACTGGAACAGCTAGAGCCTACAGCGGAGGGAACGCGGCTCG GAGTAGGAGGAACTGAAGATGAGCCTGCAGACTGTAAGGATGGCAAGCCTGG |
| mm4_intergenic_Ppp1r13b|2010107E04Rik_chr12_111944098 |
GCCCCACTCTGCAGAAAGAAGGTCTCCCTAGGAGACAGCAACAGATGCCACAGACTGGCCCTGGCCATGCTCATCCCGCT TTCAGGGACCCACGAGTCCCTCCTCCCCCAGCCCTACCTAGATGA |
| mm4_intergenic_Gm16501|Rbmy/Gm10256_chrY_2733243 |
CCTTGGGGATGTTTAGGCGTGTCCTGCAAGGGAATGGGCGTGATCTATGCTCTGCAGGCATGTCCTAAGTTGTGGGTGTG TTCTCAGCGTGGTGGGCGTGGCCTGGACGCTTTGGGGTTTCCAACTGGGAGAG |
| mm4_exon_Zc3h12a_chr4_125127751 |
GGAGTCAGACCCAACGCAGCGCAGCACCCGTTCCACCCGGTAGCACTCACCCCGCTGAGCGCCGGACGTCGTCTGTAAGG TGTCCATGGAGCCGAGTCTCGGGCTCTGACGGCACCTTCGTAG |
| mm4_exon_Tspan13_chr12_36042255 |
GAATACTCAGGCGGGGAGGAGGCCGACGGCCCCCGCAGGTGCCACCGGGCGCGGGCTACTCACGGTATACAGCAGGTTGA GCGCGCACAGGCAGTTCTTGGAGCACGAGAAGCC |
| mm4_exon_Elavl4_chr4_110211483 |
ATCTTTGAGCCTGGTGGTGGAGAGGGCCAGGGTATCGCCTGTTGGGGGACTGGTACAGCTGGGAGAGCAGGGCCTGGCTG GACTTCTGGCTGGGGTTGTT |
| mm4_exon_C1ql3_chr2_13010244 |
TCTCCTCCCTCTTGTCAGCACCTTCTCCGCCCTCCCCACTGCCTGCCCGCGCTCACCTGGTTGTTTTTGCAGAGATCAGC CCACATG |
| mm3_exon_Galc_chr12_98259119 |
CACCGCACTCCTGCCTCCCGCCAGCCCGCGCTCACCCCGCCGCCGCTGACTGCGCCGATGCCATCGAACTCCCGGCCCAG CCCGTCGGAGTCGTCTAGCACGTAGGCGCCACCGGGCACTAGCAGCGCACACAACAAT |
| mm4_intergenic_Chrdl2|Pold3_chr7_100042164 |
CAGCGCAGGGATCACTCTAGAGGCAAGACTCGAACTCCTCCACTGCCCGCTGCTGCCAGCAGGGTGCTCGCGGCCCGGGA CAGGGGGCGGGGGTCGGGGCACCGGCGCAGAAGAACACGGGCTTTGATTCGTGACT |
| mm3_intergenic_Gm17111/Dync1h1|Dync1h1_chr12_110665429 |
AGGCAGCTCCTGTGACTTTCAGGGTTAATGCAGTGAAGAGGACAGAGGGGTGGGCGGGGCCTGGTCCAGACACACTGCAC GCTGCAACACCTCTAAGCAGGCACC |
| mm4_intergenic_Nrd1/Osbpl9|Osbpl9_chr4_109062376 |
GCCATCCTCGTGAAAGAGCTACAAAAGGAAGAGAGGGTTTGCTTAGGCAGTGCAGCTTTATTCCATGCCACGCTCATCCC ACTGTTAGGCAGGAACCCAGGTCCCCCTCTGCATCCTTCATTGGCATGGACGAGC |
| mm4_intron_Ldha_chr7_46850359 | CAAGCTGCTGATCGTCTCCAATCCAGGTGAGCAGCCAGCCTGCGCTCGCCCTGCTGTGGCACGGTGCGTTAGCTACACT |
| mm4_intergenic_B230319C09Rik|Dguok_chr6_83475204 |
CCTGCTGCTACATTTCCCCAGTCGGGGGCCCAGGCCACTCCCACCCCGCAGTCTCCTCCTCTTGAGGTACTTCATATTCT AAAGCTGCTCCTTAGGCTCAGTTGGG |
| mm4_exon_Epha5_chr5_84417175 |
GCTGGCAGAGGGAAGTCAAATCGCTGCGGGCTGAGCTCGGCCGGGGGCGGTGCGACCGGCGGAGCGGGCTGGAGCGCGGG CCCGAGAGCGCAGCAGAG |
| mm4_exon_Gpr88_chr3_116251657 |
GAACTCCTCGTTCCTCCACGTGTAGAGCAGCGGGTTGAGCGCCGACAGGGCGCAGCACAGGAGCCAGCTGGCCGCCTGCA CGCCCCAGGGCACCGGGAGGGAGAAGCCACTGGCCAGGCTCACCCACACCAG |
| mm4_intergenic_Kcnq3|RP24-108J19.1_chr15_66286707 |
TTTACAAGCCCTGTGCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCAGCGGCAGTAGCAGCAGCAG |
| mm4_exon_Plk1_chr7_122169773 |
TTGAAGGGGTTGCTGTGTGTAAGTTATTTTGTACATGTCTGGGTGTGGGTTTACATCTGCTTCCCTGCCCTCGCTCAGCC CACTGTATGAATTGTATAAATGTTTCTATTAAATTGGGACTGCTCTTTCCTTAGC |
| mm4_intron_Cxcr4_chr1_128591027 |
TACTGGAGTCCGAGGTAGGCAGCAGGAGTGGTCCAGACCGTGCGCACCCCGATGTCCGAGTCACCCACCTAGGGGCTGGC ACCGTTGCCCATCATACCCAGGTCTACGACCAACACACAGCGGTTCTAGGG |
| mm4_intron_Egln1_chr8_124922049 |
AATGTCTGCCCCATGTGGAGGGGGCCTGGATCACCTGCCCGGCCAGCCTGGCAGCGATCGCCCTGCTGTGGCCCAGCTGA GCATAGCCTGAGTGT |
| mm4_intergenic_Serpine3|Gm25162_chr14_62666577 |
ACGGCTGGTCAGAAACTTGTCTTATGCACATGAGGAGAACTCTGAAGGCAGCAACTCTGTCTGGGAGAGCAATACATGTA GACATGGGGGTGAGTGCCGCCTGGTTCTGTGATTCCACAGAGCAGGTTGGAG |
| mm4_intergenic_Sgsm1|Aym1_chr5_113346606 |
CTTCGGGACAGTGAGGTGTCAGCATCCAGGCCCGGAGGGATTCCCAGCAGGCCCAGTTTAACAGAGGGGTGACCAGGGCC CGGAAAACTCTTGTCTAGGTGTGACCAGACCTTGGGAG |
| mm4_intergenic_Gm13821|mmu-mir-6240_chr5_114847585 |
AGCTCCTGGTCACACCTAGACAAGAGTTTTCCGGGCCCTGGTCACCCCTCTGTTAAACTGTGGGCCTGCTGGGAATCCCT CCAGGCCTGGATGCTGACACCTCACTATCCCAAAGCAGCACACGT |
| mm4_intergenic_Camsap2|9230116N13Rik_chr1_136346148 |
TGGGAACACTGAGCATGCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTGCGCCGCCATGCGCACTGAGCATGCC CAGCCTCGCTGCCGCCCGCGATGGGCTCCGCGCCCCTATCCATTAAT |
| mm4_exon_Chst11_chr10_82985833 |
CTCTGTTCTGAGCCTCCCCGGTGCTGGTACCCCCGCGGCGGGGTCCCCGCTTCTGCGCTCGGGACGCGCCTCCCGGACAG CCGGGTCCCCGCGGCCAGGACAAAGCCATGAAGCCGGCGCTGCTGGAAGTGATGAGGA |
| mm4_intergenic_Sbno1|Sbno1/AC127339.1_chr5_124425283 |
CGGACAGCAGGAGGAAACAGAGCAGCGGGGCGAGCGAGGCGCGGACGGCCATAGAGTGGCCGCCTCCCCGCCACCCCCCA CAGACGGCCCCACACGGACCCTGAGGAGCCGTGGTGTG |
| mm4_intergenic_Gm26214|Zcchc2_chr1_105990156 |
GGCACGGTCAGATCTCTCAAGAAAAACTAAGTCGATGTCCCTCCTCCCACGCGAACCTCGCCCACTTCTGCCGCTCCGGG CCAAGCTCACCTCGCCGTGGTCCGAAAGTCCCAAACCCA |
| mm4_exon_Peli2_chr14_48121053 |
GATAGCTCCGGGGAAGCCGGCGGGCGACGCGCACAGCCACGACGGAGCAGCCGCGGGACTGGCCGCCCAGCGCCCCGTTC GCCGCCGTGCCGTTCCCCGGCGCGCTCACCCCGTTTTCGGGATGGGAGTGTAGTGGCG |
| mm4_intron_Calm1_chr12_100199947 |
ACCTCCTCTGAGTTTTGGGCGCCTCTGGGGCTGGACTCTACAGTGGGCTGTGCGCGGGCTGGAGCCGCTGCCACAGCTGC ACCGGGGCCTTCCGCATCCACCCCCTCCGCCAGCCCCGCACCCACTGCATCCAACGC |
| mm4_exon_Akap8l_chr17_32332463 |
GGCTCAAATTCCAGGCAAGCAGCCCCGGGCCCAGCTCACCCTGCGGTTTCGGTTGTGATCCATCGTCTTGAGATGCTTTT GGATGATTCCAAACTGCATGGGGATGAAAAGGTCACAGGCTGCA |
| mm4_intron_Tprg_chr16_25388684 |
AGTGTGTTGTGATCTCTGGTCAAAGACAGAATACTTCTTTTGCTAAAGAATAACTATGTCTCTAGGATGGAGAGAGGGGT GAGGGCTGCCTGGTTGCAGGCATTTACTATTCTGTGT |
| mm4_intron_Lrp5_chr19_3628694 |
CCCTTGTCCCTGACCTGTTTGCTAGAGTCCAGAACAGCGGGAGGAGGGCGGCAGGGAGCCTTCTAGAAACAGAAGCAAAG CTCCCATATGCTCAGGATGGTGACCCCAGAAAAATTTGGAGGCAGAGGGCAGAAGTTT |
| mm4_intron_C4a_chr17_34810414 |
GCAAGACATGAGGGCCTCTTGGAGCCCAGGCCTCCCCCACCCCGCGGTGTCCCCGATGAGAGGGCTAACCCCCACAATCA TGCTTGCCAAAGCATCCCAAGTGCTCACCAGGGCTGTAGTAGTCATACAGGACAGCGCTG |
| mm4_intergenic_Gm11468|Gm14268_chr2_166307903 |
GCTCAAGGCCATTTTGTGATTAAATGAAAGGGGGAGGGGGTTGGGAGCTTCCCACAGCGGAGTGAGGACGGACAGGAGAG GAGAGACACACTCTGGGGAGCTCTCAT |
| mm4_intergenic_1700041M05Rik|Grik3_chr4_125425605 |
ATGCCTCTCATTTGCAGCCTCTGCAGTGGTATAAGAGAGGCTATGGGAGTTAAGGTGAGAATCAGATAGAGTTTGTGTCT CCTGGCAGACCTCACCCAGCTGTGGACGCTGGCACTGTCCTGAGACTATGCA |
| mm4_exon_Lipe_chr7_25388269 |
CTCCTGGTCGGTTGATGGTCAGCAGGCGCTGGGCATAGTAGGCCATAGCACGGAGCTGGGTGAGGGCGGCCAGGTAGGCC TCCAGCTCTGCTAGGTTG |